Multiple sequence alignment - TraesCS1D01G117900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G117900
chr1D
100.000
2989
0
0
1
2989
114019400
114022388
0.000000e+00
5520.0
1
TraesCS1D01G117900
chr1D
94.357
319
13
1
2419
2737
114046628
114046941
4.480000e-133
484.0
2
TraesCS1D01G117900
chr1B
94.966
1907
71
10
2
1892
174645732
174643835
0.000000e+00
2966.0
3
TraesCS1D01G117900
chr1B
95.960
198
4
2
1899
2096
174643736
174643543
4.810000e-83
318.0
4
TraesCS1D01G117900
chr1B
96.503
143
5
0
2203
2345
174642526
174642384
1.380000e-58
237.0
5
TraesCS1D01G117900
chr1B
92.174
115
6
3
2095
2206
174643461
174643347
3.080000e-35
159.0
6
TraesCS1D01G117900
chr1B
90.698
43
4
0
426
468
47154270
47154228
1.160000e-04
58.4
7
TraesCS1D01G117900
chr1A
87.576
1489
48
31
614
2030
124010612
124012035
0.000000e+00
1598.0
8
TraesCS1D01G117900
chr1A
90.283
566
46
7
54
616
124009663
124010222
0.000000e+00
732.0
9
TraesCS1D01G117900
chr1A
92.157
306
11
2
2042
2347
124016957
124017249
1.280000e-113
420.0
10
TraesCS1D01G117900
chr4B
89.971
1027
46
31
910
1899
496241917
496242923
0.000000e+00
1273.0
11
TraesCS1D01G117900
chr4B
90.448
335
14
6
1903
2224
496242960
496243289
2.750000e-115
425.0
12
TraesCS1D01G117900
chr4B
92.308
65
5
0
2233
2297
496246030
496246094
3.170000e-15
93.5
13
TraesCS1D01G117900
chr7B
87.979
574
60
6
2419
2989
481628118
481627551
0.000000e+00
669.0
14
TraesCS1D01G117900
chr7B
100.000
33
0
0
430
462
732628949
732628917
8.950000e-06
62.1
15
TraesCS1D01G117900
chr7D
82.087
575
91
8
2419
2989
21253669
21253103
5.790000e-132
481.0
16
TraesCS1D01G117900
chr7A
83.592
451
60
8
2540
2989
668000240
667999803
7.710000e-111
411.0
17
TraesCS1D01G117900
chr7A
70.953
451
123
8
211
657
520911088
520911534
1.900000e-17
100.0
18
TraesCS1D01G117900
chr7A
100.000
41
0
0
2109
2149
528226434
528226394
3.190000e-10
76.8
19
TraesCS1D01G117900
chr7A
100.000
41
0
0
2109
2149
576477046
576477086
3.190000e-10
76.8
20
TraesCS1D01G117900
chr6B
91.506
259
12
8
1222
1476
663678647
663678899
6.130000e-92
348.0
21
TraesCS1D01G117900
chr6B
81.579
418
39
16
777
1169
663678236
663678640
8.050000e-81
311.0
22
TraesCS1D01G117900
chr6B
87.037
270
17
5
2095
2347
663679434
663679702
3.770000e-74
289.0
23
TraesCS1D01G117900
chr6B
92.000
200
8
5
1901
2096
663679070
663679265
1.060000e-69
274.0
24
TraesCS1D01G117900
chr6B
82.060
301
41
8
2624
2923
29329136
29329424
8.280000e-61
244.0
25
TraesCS1D01G117900
chr6B
97.059
34
1
0
426
459
69544578
69544611
1.160000e-04
58.4
26
TraesCS1D01G117900
chr4A
75.542
507
88
29
2427
2923
631942247
631942727
1.800000e-52
217.0
27
TraesCS1D01G117900
chr6A
100.000
41
0
0
2109
2149
549488516
549488476
3.190000e-10
76.8
28
TraesCS1D01G117900
chr6A
96.970
33
1
0
430
462
77977515
77977483
4.160000e-04
56.5
29
TraesCS1D01G117900
chr3B
84.416
77
12
0
211
287
668078474
668078398
3.190000e-10
76.8
30
TraesCS1D01G117900
chr3B
100.000
41
0
0
2109
2149
712414713
712414673
3.190000e-10
76.8
31
TraesCS1D01G117900
chr3B
100.000
30
0
0
430
459
670307025
670307054
4.160000e-04
56.5
32
TraesCS1D01G117900
chr2B
100.000
41
0
0
2109
2149
98484056
98484016
3.190000e-10
76.8
33
TraesCS1D01G117900
chr2A
84.416
77
12
0
211
287
618995193
618995117
3.190000e-10
76.8
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G117900
chr1D
114019400
114022388
2988
False
5520.000000
5520
100.00000
1
2989
1
chr1D.!!$F1
2988
1
TraesCS1D01G117900
chr1B
174642384
174645732
3348
True
920.000000
2966
94.90075
2
2345
4
chr1B.!!$R2
2343
2
TraesCS1D01G117900
chr1A
124009663
124012035
2372
False
1165.000000
1598
88.92950
54
2030
2
chr1A.!!$F2
1976
3
TraesCS1D01G117900
chr4B
496241917
496246094
4177
False
597.166667
1273
90.90900
910
2297
3
chr4B.!!$F1
1387
4
TraesCS1D01G117900
chr7B
481627551
481628118
567
True
669.000000
669
87.97900
2419
2989
1
chr7B.!!$R1
570
5
TraesCS1D01G117900
chr7D
21253103
21253669
566
True
481.000000
481
82.08700
2419
2989
1
chr7D.!!$R1
570
6
TraesCS1D01G117900
chr6B
663678236
663679702
1466
False
305.500000
348
88.03050
777
2347
4
chr6B.!!$F3
1570
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
993
1426
0.538516
CCATCGTTCCCACCCACAAA
60.539
55.0
0.0
0.0
0.0
2.83
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2663
7102
0.107165
GGCGGCCCAAGAGAAGTAAT
60.107
55.0
8.12
0.0
0.0
1.89
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
35
36
3.286751
GCTTGTGCGCCCACTTCA
61.287
61.111
4.18
0.00
42.54
3.02
36
37
2.629656
GCTTGTGCGCCCACTTCAT
61.630
57.895
4.18
0.00
42.54
2.57
98
100
2.358247
GTTGACCACGTCGGCCAT
60.358
61.111
2.24
0.00
39.03
4.40
121
123
1.276705
GGAGGTTCTTCTGACTGGACC
59.723
57.143
0.35
0.35
0.00
4.46
184
187
2.713967
CCCCAAGCGATGCCCAAAG
61.714
63.158
0.00
0.00
0.00
2.77
200
204
2.488153
CCAAAGGAGACCCGTGAATTTC
59.512
50.000
0.00
0.00
37.58
2.17
243
247
3.147553
AGAAGAGCTGAAAAACCCTCC
57.852
47.619
0.00
0.00
0.00
4.30
272
276
7.724506
ACAGAAGAGGAATAGATACGGTGATAA
59.275
37.037
0.00
0.00
0.00
1.75
314
318
2.202932
CGATGGGAGGAAGCCGTG
60.203
66.667
0.00
0.00
0.00
4.94
378
382
1.315690
CACATCTCATGACCATGGCC
58.684
55.000
13.04
0.00
39.24
5.36
401
405
4.673580
CGTTCATGCCTGAGAAAATCCAAG
60.674
45.833
0.00
0.00
31.68
3.61
449
453
1.200483
CACTCCACACGATCGTATGC
58.800
55.000
20.84
0.00
0.00
3.14
537
541
1.749063
CACTCATACGCCACTAGGACA
59.251
52.381
0.00
0.00
36.89
4.02
627
1024
2.083167
TTAACCGGTTAGCAAGGACG
57.917
50.000
25.25
0.00
0.00
4.79
642
1045
1.022451
GGACGTTGGCCGCAATCTTA
61.022
55.000
0.00
0.00
41.42
2.10
661
1064
9.445878
CAATCTTATATAGGACATTGCACAGAT
57.554
33.333
0.00
0.00
0.00
2.90
735
1138
5.066764
GCCCAAAATTTAAGCACGTCCTATA
59.933
40.000
0.00
0.00
0.00
1.31
736
1139
6.238925
GCCCAAAATTTAAGCACGTCCTATAT
60.239
38.462
0.00
0.00
0.00
0.86
737
1140
7.040961
GCCCAAAATTTAAGCACGTCCTATATA
60.041
37.037
0.00
0.00
0.00
0.86
738
1141
9.010029
CCCAAAATTTAAGCACGTCCTATATAT
57.990
33.333
0.00
0.00
0.00
0.86
853
1256
1.184431
TGGGGACGCGTGAGTATTTA
58.816
50.000
20.70
0.00
0.00
1.40
993
1426
0.538516
CCATCGTTCCCACCCACAAA
60.539
55.000
0.00
0.00
0.00
2.83
1017
1450
1.344087
ACCCGGTCCACTATCCAGATT
60.344
52.381
0.00
0.00
0.00
2.40
1104
1564
1.000506
GCACCAAGAACCGTCTCTGTA
59.999
52.381
0.00
0.00
30.70
2.74
1149
1610
1.711206
GAGAACCGCGCTCTAGTTTT
58.289
50.000
5.56
0.00
0.00
2.43
1360
1840
1.228894
TGGAGGACTTCTCACCGCT
60.229
57.895
0.00
0.00
44.19
5.52
1532
2066
2.170607
AGCGGCACTCAATATTGGTACT
59.829
45.455
15.36
5.75
0.00
2.73
1534
2068
3.377172
GCGGCACTCAATATTGGTACTTT
59.623
43.478
15.36
0.00
0.00
2.66
1535
2069
4.573201
GCGGCACTCAATATTGGTACTTTA
59.427
41.667
15.36
0.00
0.00
1.85
1852
2395
4.572389
GCTTCAAGAATCGAGCAAATCCTA
59.428
41.667
0.00
0.00
35.29
2.94
1856
2399
2.101582
AGAATCGAGCAAATCCTACGCT
59.898
45.455
0.00
0.00
39.12
5.07
1859
2402
2.268298
TCGAGCAAATCCTACGCTTTC
58.732
47.619
0.00
0.00
35.75
2.62
1921
2594
4.006319
AGTAGTAAGTAGTGGTGTCCGTC
58.994
47.826
0.00
0.00
0.00
4.79
2045
2726
4.072131
AGTGCGTTGGACAAGAATGTATT
58.928
39.130
0.00
0.00
40.74
1.89
2192
3053
3.119280
TGATTGATTGCTGCCATGTTCTG
60.119
43.478
0.00
0.00
0.00
3.02
2210
3904
4.842531
TCTGCATGGGAGTTTAGAATCA
57.157
40.909
0.00
0.00
0.00
2.57
2215
3909
4.455606
CATGGGAGTTTAGAATCAGGGTC
58.544
47.826
0.00
0.00
0.00
4.46
2278
6704
8.918202
TGGATTGGTTTATGATAAGTATGGTC
57.082
34.615
0.00
0.00
0.00
4.02
2353
6790
2.674033
GCCATGGCAGCAGTGTCA
60.674
61.111
32.08
0.00
44.18
3.58
2354
6791
2.270257
GCCATGGCAGCAGTGTCAA
61.270
57.895
32.08
0.00
43.00
3.18
2355
6792
1.808531
GCCATGGCAGCAGTGTCAAA
61.809
55.000
32.08
0.00
43.00
2.69
2356
6793
0.675083
CCATGGCAGCAGTGTCAAAA
59.325
50.000
0.00
0.00
43.00
2.44
2357
6794
1.068895
CCATGGCAGCAGTGTCAAAAA
59.931
47.619
0.00
0.00
43.00
1.94
2379
6816
3.788937
ACGTCTTAACATTATGGGACGG
58.211
45.455
23.35
13.20
46.80
4.79
2380
6817
3.128349
CGTCTTAACATTATGGGACGGG
58.872
50.000
17.16
0.00
41.50
5.28
2381
6818
3.473625
GTCTTAACATTATGGGACGGGG
58.526
50.000
0.00
0.00
0.00
5.73
2382
6819
2.440253
TCTTAACATTATGGGACGGGGG
59.560
50.000
0.00
0.00
0.00
5.40
2383
6820
2.193566
TAACATTATGGGACGGGGGA
57.806
50.000
0.00
0.00
0.00
4.81
2384
6821
0.843984
AACATTATGGGACGGGGGAG
59.156
55.000
0.00
0.00
0.00
4.30
2385
6822
0.327191
ACATTATGGGACGGGGGAGT
60.327
55.000
0.00
0.00
0.00
3.85
2386
6823
1.061967
ACATTATGGGACGGGGGAGTA
60.062
52.381
0.00
0.00
0.00
2.59
2387
6824
1.623811
CATTATGGGACGGGGGAGTAG
59.376
57.143
0.00
0.00
0.00
2.57
2388
6825
0.638292
TTATGGGACGGGGGAGTAGT
59.362
55.000
0.00
0.00
0.00
2.73
2389
6826
0.638292
TATGGGACGGGGGAGTAGTT
59.362
55.000
0.00
0.00
0.00
2.24
2390
6827
0.253020
ATGGGACGGGGGAGTAGTTT
60.253
55.000
0.00
0.00
0.00
2.66
2391
6828
1.196104
TGGGACGGGGGAGTAGTTTG
61.196
60.000
0.00
0.00
0.00
2.93
2392
6829
1.078637
GGACGGGGGAGTAGTTTGC
60.079
63.158
0.00
0.00
0.00
3.68
2393
6830
1.551019
GGACGGGGGAGTAGTTTGCT
61.551
60.000
0.00
0.00
0.00
3.91
2394
6831
0.391263
GACGGGGGAGTAGTTTGCTG
60.391
60.000
0.00
0.00
0.00
4.41
2395
6832
1.745489
CGGGGGAGTAGTTTGCTGC
60.745
63.158
0.00
0.00
0.00
5.25
2396
6833
1.378646
GGGGGAGTAGTTTGCTGCC
60.379
63.158
0.00
0.00
42.73
4.85
2397
6834
1.378762
GGGGAGTAGTTTGCTGCCA
59.621
57.895
6.99
0.00
44.86
4.92
2398
6835
0.960861
GGGGAGTAGTTTGCTGCCAC
60.961
60.000
6.99
0.00
44.86
5.01
2399
6836
1.298859
GGGAGTAGTTTGCTGCCACG
61.299
60.000
0.00
0.00
42.94
4.94
2400
6837
0.602905
GGAGTAGTTTGCTGCCACGT
60.603
55.000
0.00
0.00
0.00
4.49
2401
6838
0.790814
GAGTAGTTTGCTGCCACGTC
59.209
55.000
0.00
0.00
0.00
4.34
2402
6839
0.393077
AGTAGTTTGCTGCCACGTCT
59.607
50.000
0.00
0.00
0.00
4.18
2403
6840
0.790814
GTAGTTTGCTGCCACGTCTC
59.209
55.000
0.00
0.00
0.00
3.36
2404
6841
0.666274
TAGTTTGCTGCCACGTCTCG
60.666
55.000
0.00
0.00
0.00
4.04
2405
6842
3.345808
TTTGCTGCCACGTCTCGC
61.346
61.111
0.00
0.00
0.00
5.03
2406
6843
4.600576
TTGCTGCCACGTCTCGCA
62.601
61.111
0.00
1.91
0.00
5.10
2448
6885
4.253685
CCCTCTTACTCGATTCAAGCAAA
58.746
43.478
0.00
0.00
0.00
3.68
2471
6908
0.249911
GGCGAATTACAGGCGGATCT
60.250
55.000
0.00
0.00
0.00
2.75
2472
6909
1.583054
GCGAATTACAGGCGGATCTT
58.417
50.000
0.00
0.00
0.00
2.40
2484
6921
1.679032
GCGGATCTTGCTAGGGTTTGT
60.679
52.381
0.00
0.00
0.00
2.83
2499
6937
0.777446
TTTGTGAGGGAGAAAGGGGG
59.223
55.000
0.00
0.00
0.00
5.40
2516
6954
1.309006
GGTCGGGAGGTAGGAGGAA
59.691
63.158
0.00
0.00
0.00
3.36
2517
6955
0.756070
GGTCGGGAGGTAGGAGGAAG
60.756
65.000
0.00
0.00
0.00
3.46
2518
6956
0.756070
GTCGGGAGGTAGGAGGAAGG
60.756
65.000
0.00
0.00
0.00
3.46
2519
6957
1.457831
CGGGAGGTAGGAGGAAGGG
60.458
68.421
0.00
0.00
0.00
3.95
2551
6990
1.064825
GGAAACAGAGGAAGGGGACA
58.935
55.000
0.00
0.00
0.00
4.02
2554
6993
1.068121
AACAGAGGAAGGGGACAAGG
58.932
55.000
0.00
0.00
0.00
3.61
2560
6999
0.840722
GGAAGGGGACAAGGAGTGGA
60.841
60.000
0.00
0.00
0.00
4.02
2573
7012
7.202047
GGACAAGGAGTGGATTCAGTCTATTAT
60.202
40.741
8.77
0.00
41.76
1.28
2586
7025
9.939802
ATTCAGTCTATTATAATTTCGTACCCC
57.060
33.333
2.68
0.00
0.00
4.95
2587
7026
7.596494
TCAGTCTATTATAATTTCGTACCCCG
58.404
38.462
2.68
0.00
38.13
5.73
2614
7053
0.322322
CCACCGTGGGCTACTTAACA
59.678
55.000
9.99
0.00
32.67
2.41
2636
7075
1.296715
CGCTTACAGCTCCCAGGTT
59.703
57.895
0.00
0.00
39.60
3.50
2648
7087
3.642938
CCAGGTTGATGGGTCGAAA
57.357
52.632
0.00
0.00
36.64
3.46
2707
7146
3.386237
GCTCGTGGGCTCTGGACT
61.386
66.667
0.00
0.00
0.00
3.85
2711
7150
2.985456
GTGGGCTCTGGACTGGAG
59.015
66.667
0.00
0.00
0.00
3.86
2721
7160
2.431683
GACTGGAGGCTGGTGCAA
59.568
61.111
0.00
0.00
41.91
4.08
2815
7255
0.827368
GCTCGAAGAAGTCCTCCCAT
59.173
55.000
0.00
0.00
34.09
4.00
2820
7260
0.905357
AAGAAGTCCTCCCATGACGG
59.095
55.000
0.00
0.00
37.80
4.79
2850
7290
2.658707
GCTGCGACGACCACTTGAC
61.659
63.158
0.00
0.00
0.00
3.18
2859
7299
1.230324
GACCACTTGACCAGCACTTC
58.770
55.000
0.00
0.00
0.00
3.01
2876
7316
4.256920
CACTTCAGGGATCTTCGATTTGT
58.743
43.478
0.00
0.00
0.00
2.83
2973
7413
3.729356
CTGATACTGTGTCAGCGCT
57.271
52.632
19.37
2.64
36.95
5.92
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
35
36
0.987294
CTCCAACTCCAGGACACCAT
59.013
55.000
0.00
0.00
0.00
3.55
36
37
0.399949
ACTCCAACTCCAGGACACCA
60.400
55.000
0.00
0.00
0.00
4.17
98
100
2.158310
TCCAGTCAGAAGAACCTCCAGA
60.158
50.000
0.00
0.00
0.00
3.86
130
133
1.646189
GAGGCGTTGATCAAGAGGAC
58.354
55.000
8.80
3.53
0.00
3.85
143
146
3.374402
CAGACGAGGTGGAGGCGT
61.374
66.667
0.00
0.00
41.45
5.68
184
187
2.491675
AAGGAAATTCACGGGTCTCC
57.508
50.000
0.00
0.00
0.00
3.71
200
204
3.722728
AGCAAGCTCAACAAGAAAAGG
57.277
42.857
0.00
0.00
0.00
3.11
243
247
5.067936
ACCGTATCTATTCCTCTTCTGTGTG
59.932
44.000
0.00
0.00
0.00
3.82
272
276
0.250513
GCTTCGACAGGGTGATCCTT
59.749
55.000
0.00
0.00
45.47
3.36
309
313
3.788766
GGCGATGTGTCACACGGC
61.789
66.667
26.01
26.01
39.37
5.68
314
318
1.442769
ACTGAATGGCGATGTGTCAC
58.557
50.000
0.00
0.00
32.94
3.67
378
382
2.749076
TGGATTTTCTCAGGCATGAACG
59.251
45.455
1.37
0.00
34.23
3.95
449
453
5.006746
GCGGTTAAGTTAGACATGATGAAGG
59.993
44.000
0.00
0.00
0.00
3.46
537
541
6.846505
TCAAGGGGAGACTTATCACTGATAAT
59.153
38.462
11.20
3.56
34.57
1.28
581
585
9.784531
AATGTGTTCTACCCATTATTATCTCTG
57.215
33.333
0.00
0.00
0.00
3.35
627
1024
4.392138
GTCCTATATAAGATTGCGGCCAAC
59.608
45.833
2.24
0.00
32.95
3.77
642
1045
9.017509
CCAATTAATCTGTGCAATGTCCTATAT
57.982
33.333
0.00
0.00
0.00
0.86
661
1064
4.142556
GCGTGCTTAGTTTAGGCCAATTAA
60.143
41.667
5.01
0.00
0.00
1.40
735
1138
1.299165
GCGACGGTCGTGCTCATAT
60.299
57.895
28.75
0.00
42.81
1.78
736
1139
2.101575
GCGACGGTCGTGCTCATA
59.898
61.111
28.75
0.00
42.81
2.15
853
1256
2.119029
TCGTGCCAGATCGGACGAT
61.119
57.895
12.05
6.95
40.25
3.73
1104
1564
3.502237
CTACAAACGGTAGCACGGT
57.498
52.632
0.00
0.00
42.81
4.83
1149
1610
5.305128
AGATGAAAAAGGGTTGCAGATCAAA
59.695
36.000
0.00
0.00
36.26
2.69
1360
1840
1.754380
CTTGACGAGGTCCCACCACA
61.754
60.000
0.00
0.00
41.95
4.17
1532
2066
4.764823
GTGGACAGTGAATTGGGTGATAAA
59.235
41.667
0.00
0.00
0.00
1.40
1534
2068
3.618752
CGTGGACAGTGAATTGGGTGATA
60.619
47.826
0.00
0.00
0.00
2.15
1535
2069
2.795329
GTGGACAGTGAATTGGGTGAT
58.205
47.619
0.00
0.00
0.00
3.06
1852
2395
1.670406
CTGCAGGCAGAGAAAGCGT
60.670
57.895
16.02
0.00
46.30
5.07
1856
2399
1.817357
CATCACTGCAGGCAGAGAAA
58.183
50.000
26.63
9.62
44.28
2.52
2045
2726
5.588648
GCAATAACAAGGGTGCATTCTACTA
59.411
40.000
0.00
0.00
36.97
1.82
2103
2961
7.321745
ACGCATCTTTATCTTTAGAAAAGGG
57.678
36.000
0.00
0.00
32.33
3.95
2192
3053
3.217626
CCCTGATTCTAAACTCCCATGC
58.782
50.000
0.00
0.00
0.00
4.06
2278
6704
6.641169
TCAGTGTATATAGCTGAGGTGAAG
57.359
41.667
11.04
0.00
34.72
3.02
2354
6791
6.348704
CCGTCCCATAATGTTAAGACGTTTTT
60.349
38.462
9.20
0.00
44.06
1.94
2355
6792
5.122711
CCGTCCCATAATGTTAAGACGTTTT
59.877
40.000
9.20
0.00
44.06
2.43
2356
6793
4.632688
CCGTCCCATAATGTTAAGACGTTT
59.367
41.667
9.20
0.00
44.06
3.60
2357
6794
4.186159
CCGTCCCATAATGTTAAGACGTT
58.814
43.478
9.20
0.00
44.06
3.99
2358
6795
3.431207
CCCGTCCCATAATGTTAAGACGT
60.431
47.826
9.20
0.00
44.06
4.34
2359
6796
3.128349
CCCGTCCCATAATGTTAAGACG
58.872
50.000
3.52
3.52
44.88
4.18
2360
6797
3.473625
CCCCGTCCCATAATGTTAAGAC
58.526
50.000
0.00
0.00
0.00
3.01
2361
6798
2.440253
CCCCCGTCCCATAATGTTAAGA
59.560
50.000
0.00
0.00
0.00
2.10
2362
6799
2.440253
TCCCCCGTCCCATAATGTTAAG
59.560
50.000
0.00
0.00
0.00
1.85
2363
6800
2.440253
CTCCCCCGTCCCATAATGTTAA
59.560
50.000
0.00
0.00
0.00
2.01
2364
6801
2.051692
CTCCCCCGTCCCATAATGTTA
58.948
52.381
0.00
0.00
0.00
2.41
2365
6802
0.843984
CTCCCCCGTCCCATAATGTT
59.156
55.000
0.00
0.00
0.00
2.71
2366
6803
0.327191
ACTCCCCCGTCCCATAATGT
60.327
55.000
0.00
0.00
0.00
2.71
2367
6804
1.623811
CTACTCCCCCGTCCCATAATG
59.376
57.143
0.00
0.00
0.00
1.90
2368
6805
1.222298
ACTACTCCCCCGTCCCATAAT
59.778
52.381
0.00
0.00
0.00
1.28
2369
6806
0.638292
ACTACTCCCCCGTCCCATAA
59.362
55.000
0.00
0.00
0.00
1.90
2370
6807
0.638292
AACTACTCCCCCGTCCCATA
59.362
55.000
0.00
0.00
0.00
2.74
2371
6808
0.253020
AAACTACTCCCCCGTCCCAT
60.253
55.000
0.00
0.00
0.00
4.00
2372
6809
1.159184
AAACTACTCCCCCGTCCCA
59.841
57.895
0.00
0.00
0.00
4.37
2373
6810
1.600638
CAAACTACTCCCCCGTCCC
59.399
63.158
0.00
0.00
0.00
4.46
2374
6811
1.078637
GCAAACTACTCCCCCGTCC
60.079
63.158
0.00
0.00
0.00
4.79
2375
6812
0.391263
CAGCAAACTACTCCCCCGTC
60.391
60.000
0.00
0.00
0.00
4.79
2376
6813
1.677552
CAGCAAACTACTCCCCCGT
59.322
57.895
0.00
0.00
0.00
5.28
2377
6814
1.745489
GCAGCAAACTACTCCCCCG
60.745
63.158
0.00
0.00
0.00
5.73
2378
6815
1.378646
GGCAGCAAACTACTCCCCC
60.379
63.158
0.00
0.00
0.00
5.40
2379
6816
0.960861
GTGGCAGCAAACTACTCCCC
60.961
60.000
0.00
0.00
0.00
4.81
2380
6817
1.298859
CGTGGCAGCAAACTACTCCC
61.299
60.000
0.00
0.00
0.00
4.30
2381
6818
0.602905
ACGTGGCAGCAAACTACTCC
60.603
55.000
0.00
0.00
0.00
3.85
2382
6819
0.790814
GACGTGGCAGCAAACTACTC
59.209
55.000
0.00
0.00
0.00
2.59
2383
6820
0.393077
AGACGTGGCAGCAAACTACT
59.607
50.000
0.00
0.00
0.00
2.57
2384
6821
0.790814
GAGACGTGGCAGCAAACTAC
59.209
55.000
0.00
0.00
0.00
2.73
2385
6822
0.666274
CGAGACGTGGCAGCAAACTA
60.666
55.000
0.00
0.00
0.00
2.24
2386
6823
1.956170
CGAGACGTGGCAGCAAACT
60.956
57.895
0.00
0.00
0.00
2.66
2387
6824
2.551270
CGAGACGTGGCAGCAAAC
59.449
61.111
0.00
0.00
0.00
2.93
2388
6825
3.345808
GCGAGACGTGGCAGCAAA
61.346
61.111
0.00
0.00
0.00
3.68
2389
6826
4.600576
TGCGAGACGTGGCAGCAA
62.601
61.111
0.00
0.00
31.56
3.91
2393
6830
3.295273
ACTCTGCGAGACGTGGCA
61.295
61.111
11.64
0.00
35.85
4.92
2394
6831
2.807045
CACTCTGCGAGACGTGGC
60.807
66.667
11.64
0.00
33.32
5.01
2395
6832
2.807045
GCACTCTGCGAGACGTGG
60.807
66.667
11.64
0.00
31.71
4.94
2404
6841
0.795085
GTGACAGTGATGCACTCTGC
59.205
55.000
14.26
9.87
43.43
4.26
2405
6842
1.066136
CGTGACAGTGATGCACTCTG
58.934
55.000
0.00
13.31
43.43
3.35
2406
6843
0.961753
TCGTGACAGTGATGCACTCT
59.038
50.000
0.00
0.00
43.43
3.24
2407
6844
1.063806
GTCGTGACAGTGATGCACTC
58.936
55.000
0.00
0.00
43.43
3.51
2408
6845
0.319900
GGTCGTGACAGTGATGCACT
60.320
55.000
0.00
0.00
46.51
4.40
2409
6846
1.291877
GGGTCGTGACAGTGATGCAC
61.292
60.000
0.00
1.29
34.10
4.57
2410
6847
1.005037
GGGTCGTGACAGTGATGCA
60.005
57.895
0.00
0.00
0.00
3.96
2411
6848
0.737715
GAGGGTCGTGACAGTGATGC
60.738
60.000
0.00
0.00
0.00
3.91
2412
6849
0.891373
AGAGGGTCGTGACAGTGATG
59.109
55.000
0.00
0.00
0.00
3.07
2413
6850
1.633774
AAGAGGGTCGTGACAGTGAT
58.366
50.000
0.00
0.00
0.00
3.06
2414
6851
1.884579
GTAAGAGGGTCGTGACAGTGA
59.115
52.381
0.00
0.00
0.00
3.41
2415
6852
1.887198
AGTAAGAGGGTCGTGACAGTG
59.113
52.381
2.00
0.00
0.00
3.66
2416
6853
2.161030
GAGTAAGAGGGTCGTGACAGT
58.839
52.381
2.00
0.00
0.00
3.55
2417
6854
1.130749
CGAGTAAGAGGGTCGTGACAG
59.869
57.143
2.00
0.00
0.00
3.51
2448
6885
1.095228
CCGCCTGTAATTCGCCATGT
61.095
55.000
0.00
0.00
0.00
3.21
2471
6908
1.351017
CTCCCTCACAAACCCTAGCAA
59.649
52.381
0.00
0.00
0.00
3.91
2472
6909
0.984230
CTCCCTCACAAACCCTAGCA
59.016
55.000
0.00
0.00
0.00
3.49
2484
6921
1.612442
CGACCCCCTTTCTCCCTCA
60.612
63.158
0.00
0.00
0.00
3.86
2499
6937
0.756070
CCTTCCTCCTACCTCCCGAC
60.756
65.000
0.00
0.00
0.00
4.79
2516
6954
1.243230
TTCCCTGTATCCCCTCCCCT
61.243
60.000
0.00
0.00
0.00
4.79
2517
6955
0.328158
TTTCCCTGTATCCCCTCCCC
60.328
60.000
0.00
0.00
0.00
4.81
2518
6956
0.844660
GTTTCCCTGTATCCCCTCCC
59.155
60.000
0.00
0.00
0.00
4.30
2519
6957
1.490910
CTGTTTCCCTGTATCCCCTCC
59.509
57.143
0.00
0.00
0.00
4.30
2560
6999
9.939802
GGGGTACGAAATTATAATAGACTGAAT
57.060
33.333
0.00
0.00
0.00
2.57
2585
7024
4.742201
CACGGTGGAGTGGAGCGG
62.742
72.222
0.00
0.00
38.62
5.52
2636
7075
2.270352
ACAAGCTTTTCGACCCATCA
57.730
45.000
0.00
0.00
0.00
3.07
2663
7102
0.107165
GGCGGCCCAAGAGAAGTAAT
60.107
55.000
8.12
0.00
0.00
1.89
2666
7105
4.035102
GGGCGGCCCAAGAGAAGT
62.035
66.667
32.90
0.00
44.65
3.01
2690
7129
3.386237
AGTCCAGAGCCCACGAGC
61.386
66.667
0.00
0.00
0.00
5.03
2693
7132
2.997315
TCCAGTCCAGAGCCCACG
60.997
66.667
0.00
0.00
0.00
4.94
2707
7146
0.918258
TGATATTGCACCAGCCTCCA
59.082
50.000
0.00
0.00
41.13
3.86
2721
7160
1.696097
GGGGGTGTCACGGCTGATAT
61.696
60.000
0.00
0.00
0.00
1.63
2744
7184
2.738521
TCAAGCCGCGTCTGAAGC
60.739
61.111
4.92
5.46
0.00
3.86
2836
7276
2.022129
GCTGGTCAAGTGGTCGTCG
61.022
63.158
0.00
0.00
0.00
5.12
2850
7290
1.741732
CGAAGATCCCTGAAGTGCTGG
60.742
57.143
0.00
0.00
35.50
4.85
2859
7299
5.182001
ACAAAAGACAAATCGAAGATCCCTG
59.818
40.000
0.00
0.00
45.12
4.45
2876
7316
2.489938
AGGCGCCTGATTACAAAAGA
57.510
45.000
32.33
0.00
0.00
2.52
2955
7395
1.554392
GAGCGCTGACACAGTATCAG
58.446
55.000
18.48
4.29
45.40
2.90
2959
7399
2.265904
ACCGAGCGCTGACACAGTA
61.266
57.895
18.48
0.00
33.43
2.74
2962
7402
4.662961
CCACCGAGCGCTGACACA
62.663
66.667
18.48
0.00
0.00
3.72
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.