Multiple sequence alignment - TraesCS1D01G117800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G117800 chr1D 100.000 6123 0 0 1 6123 114009552 114003430 0.000000e+00 11308
1 TraesCS1D01G117800 chr1D 98.883 806 9 0 3224 4029 114009690 114010495 0.000000e+00 1439
2 TraesCS1D01G117800 chr1D 96.697 333 9 2 2542 2873 333497976 333498307 2.490000e-153 553
3 TraesCS1D01G117800 chr1B 92.581 2588 125 27 9 2550 174602716 174600150 0.000000e+00 3653
4 TraesCS1D01G117800 chr1B 95.946 814 20 5 3224 4029 216101691 216100883 0.000000e+00 1308
5 TraesCS1D01G117800 chr1B 93.750 672 27 2 4501 5162 174599242 174598576 0.000000e+00 994
6 TraesCS1D01G117800 chr1B 96.356 494 13 3 5433 5924 174598033 174597543 0.000000e+00 808
7 TraesCS1D01G117800 chr1B 93.958 480 21 6 4028 4501 174599824 174599347 0.000000e+00 719
8 TraesCS1D01G117800 chr1B 96.142 337 7 5 2538 2873 186798873 186799204 4.170000e-151 545
9 TraesCS1D01G117800 chr1B 93.611 360 16 4 2870 3229 174600155 174599803 1.170000e-146 531
10 TraesCS1D01G117800 chr1B 98.404 188 3 0 5244 5431 174598309 174598122 1.270000e-86 331
11 TraesCS1D01G117800 chr1A 94.745 2036 90 10 1 2024 123553537 123551507 0.000000e+00 3151
12 TraesCS1D01G117800 chr1A 94.715 1419 53 9 4030 5431 123550484 123549071 0.000000e+00 2185
13 TraesCS1D01G117800 chr1A 96.066 788 21 2 3224 4004 49248685 49249469 0.000000e+00 1275
14 TraesCS1D01G117800 chr1A 94.643 616 21 5 5433 6044 123548982 123548375 0.000000e+00 944
15 TraesCS1D01G117800 chr1A 89.199 537 30 8 2033 2551 123551341 123550815 0.000000e+00 645
16 TraesCS1D01G117800 chr1A 98.142 323 4 2 2551 2873 369510892 369511212 4.140000e-156 562
17 TraesCS1D01G117800 chr1A 93.889 360 19 3 2870 3229 123550821 123550465 1.940000e-149 540
18 TraesCS1D01G117800 chr1A 93.671 79 5 0 6045 6123 123546765 123546687 1.080000e-22 119
19 TraesCS1D01G117800 chr2D 96.902 807 22 3 3224 4029 536160342 536159538 0.000000e+00 1349
20 TraesCS1D01G117800 chr2D 96.687 332 9 2 2543 2873 159328630 159328300 8.970000e-153 551
21 TraesCS1D01G117800 chr5B 95.449 813 27 5 3224 4029 616647771 616646962 0.000000e+00 1288
22 TraesCS1D01G117800 chr5B 94.881 801 33 4 3234 4029 73988581 73987784 0.000000e+00 1245
23 TraesCS1D01G117800 chr5B 98.142 323 5 1 2551 2873 222365787 222365466 4.140000e-156 562
24 TraesCS1D01G117800 chr7B 95.332 814 30 5 3223 4029 529432345 529431533 0.000000e+00 1286
25 TraesCS1D01G117800 chr7A 95.415 807 31 4 3229 4029 200036535 200037341 0.000000e+00 1280
26 TraesCS1D01G117800 chr7A 98.746 319 3 1 2555 2873 465760863 465761180 3.200000e-157 566
27 TraesCS1D01G117800 chr3A 95.191 811 29 3 3229 4029 469411180 469411990 0.000000e+00 1273
28 TraesCS1D01G117800 chr3A 96.697 333 8 3 2542 2873 631289675 631290005 8.970000e-153 551
29 TraesCS1D01G117800 chr3B 98.142 323 5 1 2551 2873 39816298 39815977 4.140000e-156 562
30 TraesCS1D01G117800 chr2A 96.687 332 9 2 2543 2873 329693858 329693528 8.970000e-153 551


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G117800 chr1D 114003430 114009552 6122 True 11308.000000 11308 100.000000 1 6123 1 chr1D.!!$R1 6122
1 TraesCS1D01G117800 chr1D 114009690 114010495 805 False 1439.000000 1439 98.883000 3224 4029 1 chr1D.!!$F1 805
2 TraesCS1D01G117800 chr1B 216100883 216101691 808 True 1308.000000 1308 95.946000 3224 4029 1 chr1B.!!$R1 805
3 TraesCS1D01G117800 chr1B 174597543 174602716 5173 True 1172.666667 3653 94.776667 9 5924 6 chr1B.!!$R2 5915
4 TraesCS1D01G117800 chr1A 49248685 49249469 784 False 1275.000000 1275 96.066000 3224 4004 1 chr1A.!!$F1 780
5 TraesCS1D01G117800 chr1A 123546687 123553537 6850 True 1264.000000 3151 93.477000 1 6123 6 chr1A.!!$R1 6122
6 TraesCS1D01G117800 chr2D 536159538 536160342 804 True 1349.000000 1349 96.902000 3224 4029 1 chr2D.!!$R2 805
7 TraesCS1D01G117800 chr5B 616646962 616647771 809 True 1288.000000 1288 95.449000 3224 4029 1 chr5B.!!$R3 805
8 TraesCS1D01G117800 chr5B 73987784 73988581 797 True 1245.000000 1245 94.881000 3234 4029 1 chr5B.!!$R1 795
9 TraesCS1D01G117800 chr7B 529431533 529432345 812 True 1286.000000 1286 95.332000 3223 4029 1 chr7B.!!$R1 806
10 TraesCS1D01G117800 chr7A 200036535 200037341 806 False 1280.000000 1280 95.415000 3229 4029 1 chr7A.!!$F1 800
11 TraesCS1D01G117800 chr3A 469411180 469411990 810 False 1273.000000 1273 95.191000 3229 4029 1 chr3A.!!$F1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1009 0.249657 CTCACCAGCTTAGATCGGGC 60.250 60.0 0.00 0.0 0.00 6.13 F
2642 2855 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.0 4.27 0.0 36.69 2.94 F
2772 2985 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.0 4.27 0.0 36.69 2.94 F
2853 3066 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.0 0.00 0.0 0.00 4.34 F
2866 3079 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.0 0.00 0.0 0.00 5.28 F
4701 5050 0.540923 GAGCTTCTGATGGGCTGAGT 59.459 55.0 5.32 0.0 36.37 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2704 2917 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.00 0.00 0.00 0.00 4.52 R
4557 4896 0.721718 CGCATCCGACTCCAGAAAAC 59.278 55.00 0.00 0.00 36.29 2.43 R
4713 5062 1.516365 CTAGCAGCCTGGCATGATGC 61.516 60.00 22.69 22.69 44.08 3.91 R
4981 5330 4.203226 TGCAGTACCAGATTTGAACAACA 58.797 39.13 0.00 0.00 0.00 3.33 R
5018 5367 1.734655 ATCCTACCCAGGCGATCAAT 58.265 50.00 0.00 0.00 42.30 2.57 R
5992 6622 0.033504 GATCCTCGAAGCGGGCATAA 59.966 55.00 0.00 0.00 30.24 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 132 7.282901 CCATGTCATATCCTCACAACATTACAA 59.717 37.037 0.00 0.00 0.00 2.41
303 310 4.773323 AAAAATCACAGCTAGGACAAGC 57.227 40.909 0.00 0.00 43.11 4.01
430 437 1.134670 CCCGATCCTGACTGTTTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
462 469 5.003804 ACAGACAACCCTAGTTAGCAAATG 58.996 41.667 0.00 0.00 33.27 2.32
463 470 4.396166 CAGACAACCCTAGTTAGCAAATGG 59.604 45.833 0.00 0.00 33.27 3.16
465 472 3.023832 CAACCCTAGTTAGCAAATGGGG 58.976 50.000 13.43 13.43 38.94 4.96
472 482 1.743394 GTTAGCAAATGGGGTCCGAAG 59.257 52.381 0.00 0.00 0.00 3.79
646 656 2.097036 ACACGGGTACATGAGATCGAA 58.903 47.619 0.00 0.00 0.00 3.71
672 682 2.512515 GGCGCTGGACAGGTGATC 60.513 66.667 7.64 0.00 0.00 2.92
677 692 1.738365 CGCTGGACAGGTGATCAAGAG 60.738 57.143 0.00 0.00 0.00 2.85
690 705 4.022603 TGATCAAGAGAGAGACTGGGAAG 58.977 47.826 0.00 0.00 0.00 3.46
733 752 2.765807 AGGAGGAGGACGCCATGG 60.766 66.667 7.63 7.63 42.23 3.66
818 837 0.538287 GCTGCTGGTTTTGGGAGTCT 60.538 55.000 0.00 0.00 0.00 3.24
823 842 2.626780 GGTTTTGGGAGTCTGCGGC 61.627 63.158 0.00 0.00 0.00 6.53
863 882 5.399858 CGTGGCATAGAGCTATTACGTTAT 58.600 41.667 0.00 0.00 44.79 1.89
864 883 5.862323 CGTGGCATAGAGCTATTACGTTATT 59.138 40.000 0.00 0.00 44.79 1.40
867 886 5.063564 GGCATAGAGCTATTACGTTATTGCC 59.936 44.000 15.48 11.65 44.79 4.52
874 893 1.923899 TTACGTTATTGCCGCATCGA 58.076 45.000 0.00 0.00 0.00 3.59
884 903 0.859232 GCCGCATCGATCACGTAAAT 59.141 50.000 14.33 0.00 40.69 1.40
889 908 4.493382 CCGCATCGATCACGTAAATGAAAA 60.493 41.667 14.33 0.00 40.69 2.29
890 909 4.661776 CGCATCGATCACGTAAATGAAAAG 59.338 41.667 8.78 0.00 40.69 2.27
891 910 5.560148 GCATCGATCACGTAAATGAAAAGT 58.440 37.500 0.00 0.00 40.69 2.66
892 911 6.507299 CGCATCGATCACGTAAATGAAAAGTA 60.507 38.462 8.78 0.00 40.69 2.24
937 956 1.112916 TCAAGAGGTCGTGCACAGGA 61.113 55.000 18.64 3.73 0.00 3.86
960 979 4.025401 CGGCGCTTCGGTTTTGCT 62.025 61.111 7.64 0.00 0.00 3.91
990 1009 0.249657 CTCACCAGCTTAGATCGGGC 60.250 60.000 0.00 0.00 0.00 6.13
1239 1268 2.967599 TCTCGTGATGTTGGGATGAG 57.032 50.000 0.00 0.00 0.00 2.90
1373 1402 4.436332 CTCTGCTGTATGAGTGCATTGTA 58.564 43.478 0.00 0.00 36.07 2.41
1376 1405 4.768583 TGCTGTATGAGTGCATTGTATGA 58.231 39.130 0.00 0.00 35.94 2.15
1391 1420 8.791675 TGCATTGTATGATTGTTTAGTTCTGAA 58.208 29.630 0.00 0.00 0.00 3.02
1486 1515 0.756903 AGAACGCCGGCAAGGTATAT 59.243 50.000 28.98 0.76 43.70 0.86
1495 1524 3.370421 CCGGCAAGGTATATATGGCATCA 60.370 47.826 1.65 0.00 39.38 3.07
1500 1529 7.467267 CGGCAAGGTATATATGGCATCAATAAC 60.467 40.741 1.65 6.10 39.38 1.89
1504 1533 8.511604 AGGTATATATGGCATCAATAACTTGC 57.488 34.615 1.65 0.00 35.64 4.01
1510 1539 4.842574 TGGCATCAATAACTTGCTACTCA 58.157 39.130 0.00 0.00 36.62 3.41
1554 1586 3.317993 GCAATAACTGTTGGTGAGGTTGT 59.682 43.478 2.69 0.00 0.00 3.32
1596 1628 4.083110 CCTCACATTGTGACTGAAATGGTC 60.083 45.833 15.41 0.00 37.67 4.02
1933 1966 5.607119 AACCGTATTAACTGCTTCAACTG 57.393 39.130 0.00 0.00 0.00 3.16
1942 1975 2.023673 CTGCTTCAACTGTTTCCCACA 58.976 47.619 0.00 0.00 0.00 4.17
1983 2016 4.023707 AGTGACTTCAAAGTTAGCACATGC 60.024 41.667 12.81 0.00 39.88 4.06
2014 2047 2.161211 GCAGTCAAGCATCTCCAAAGAC 59.839 50.000 0.00 0.00 33.32 3.01
2019 2052 4.456911 GTCAAGCATCTCCAAAGACAATGA 59.543 41.667 0.00 0.00 33.32 2.57
2024 2057 7.001099 AGCATCTCCAAAGACAATGAAAAAT 57.999 32.000 0.00 0.00 33.32 1.82
2026 2059 8.755977 AGCATCTCCAAAGACAATGAAAAATAT 58.244 29.630 0.00 0.00 33.32 1.28
2093 2291 9.674824 GTCAGATGCAAATTAGAAGGATAAATG 57.325 33.333 0.00 0.00 0.00 2.32
2117 2315 6.878389 TGCTGTCAGATGTTATACATTCAACA 59.122 34.615 3.32 0.00 39.27 3.33
2152 2354 5.835113 ATAGCCAATTAAGCGATGTTGTT 57.165 34.783 0.00 0.00 34.64 2.83
2180 2382 4.819630 TCTGCTTATGGTTTGACGAGTTTT 59.180 37.500 0.00 0.00 0.00 2.43
2286 2488 6.180472 CCAGGTTTAAGCTTATCCAGAAAGA 58.820 40.000 22.02 0.00 0.00 2.52
2334 2536 6.367695 ACTGCCAAACTAAAACAAGTTGAAAC 59.632 34.615 10.54 0.00 39.62 2.78
2369 2571 5.047802 ACGTTTCCCTTTTCTACGACTATGA 60.048 40.000 0.00 0.00 36.21 2.15
2376 2578 7.504574 TCCCTTTTCTACGACTATGATCATGTA 59.495 37.037 18.72 10.41 0.00 2.29
2421 2623 4.766891 ACTAATCCACACAAGGTTCATTGG 59.233 41.667 2.50 0.00 34.36 3.16
2430 2632 5.104569 ACACAAGGTTCATTGGTCCAAAATT 60.105 36.000 8.75 0.00 34.36 1.82
2464 2666 9.712305 TGTTTCTTTTGAATAACCTTTGTTTCA 57.288 25.926 0.00 0.00 38.37 2.69
2503 2715 8.788325 ACTACTGGTAGTTCATTTTGTTATCC 57.212 34.615 7.51 0.00 43.35 2.59
2511 2724 7.989416 AGTTCATTTTGTTATCCGGAACTAA 57.011 32.000 9.01 3.31 40.98 2.24
2512 2725 7.813645 AGTTCATTTTGTTATCCGGAACTAAC 58.186 34.615 17.49 17.49 40.98 2.34
2525 2738 5.047802 TCCGGAACTAACAGTTTGTAGGTAG 60.048 44.000 0.00 0.00 38.80 3.18
2545 2758 8.398878 AGGTAGTAAGATAACTATGTCTGAGC 57.601 38.462 0.00 0.00 34.59 4.26
2546 2759 8.221944 AGGTAGTAAGATAACTATGTCTGAGCT 58.778 37.037 0.00 0.00 34.59 4.09
2547 2760 8.852135 GGTAGTAAGATAACTATGTCTGAGCTT 58.148 37.037 0.00 0.00 34.59 3.74
2566 2779 9.465985 CTGAGCTTAATACTTACTTACTAAGCC 57.534 37.037 7.76 2.14 41.25 4.35
2567 2780 9.198475 TGAGCTTAATACTTACTTACTAAGCCT 57.802 33.333 7.76 0.00 41.25 4.58
2574 2787 9.445878 AATACTTACTTACTAAGCCTTTTGTCC 57.554 33.333 0.00 0.00 36.04 4.02
2575 2788 6.236409 ACTTACTTACTAAGCCTTTTGTCCC 58.764 40.000 0.00 0.00 36.04 4.46
2576 2789 4.717279 ACTTACTAAGCCTTTTGTCCCA 57.283 40.909 0.00 0.00 0.00 4.37
2577 2790 5.056553 ACTTACTAAGCCTTTTGTCCCAA 57.943 39.130 0.00 0.00 0.00 4.12
2578 2791 5.451354 ACTTACTAAGCCTTTTGTCCCAAA 58.549 37.500 0.00 0.00 0.00 3.28
2579 2792 5.301045 ACTTACTAAGCCTTTTGTCCCAAAC 59.699 40.000 0.00 0.00 0.00 2.93
2580 2793 3.637769 ACTAAGCCTTTTGTCCCAAACA 58.362 40.909 0.00 0.00 35.59 2.83
2581 2794 4.027437 ACTAAGCCTTTTGTCCCAAACAA 58.973 39.130 0.00 0.00 46.11 2.83
2594 2807 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2595 2808 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2596 2809 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2597 2810 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2598 2811 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
2599 2812 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
2600 2813 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
2601 2814 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
2602 2815 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
2603 2816 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
2604 2817 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
2605 2818 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
2606 2819 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
2607 2820 3.908103 GGGGTAGGCTAGATATGAAACCA 59.092 47.826 0.00 0.00 0.00 3.67
2608 2821 4.536489 GGGGTAGGCTAGATATGAAACCAT 59.464 45.833 0.00 0.00 0.00 3.55
2609 2822 5.014228 GGGGTAGGCTAGATATGAAACCATT 59.986 44.000 0.00 0.00 0.00 3.16
2610 2823 6.467339 GGGGTAGGCTAGATATGAAACCATTT 60.467 42.308 0.00 0.00 0.00 2.32
2611 2824 6.655425 GGGTAGGCTAGATATGAAACCATTTC 59.345 42.308 0.00 0.00 40.08 2.17
2620 2833 3.485463 TGAAACCATTTCACGAGGACT 57.515 42.857 0.00 0.00 44.21 3.85
2621 2834 3.815809 TGAAACCATTTCACGAGGACTT 58.184 40.909 0.00 0.00 44.21 3.01
2622 2835 3.813166 TGAAACCATTTCACGAGGACTTC 59.187 43.478 0.00 0.00 44.21 3.01
2623 2836 2.474410 ACCATTTCACGAGGACTTCC 57.526 50.000 0.00 0.00 0.00 3.46
2624 2837 1.003233 ACCATTTCACGAGGACTTCCC 59.997 52.381 0.00 0.00 36.42 3.97
2625 2838 1.003118 CCATTTCACGAGGACTTCCCA 59.997 52.381 0.00 0.00 37.41 4.37
2626 2839 2.350522 CATTTCACGAGGACTTCCCAG 58.649 52.381 0.00 0.00 37.41 4.45
2627 2840 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
2628 2841 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
2629 2842 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
2630 2843 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
2631 2844 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
2632 2845 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
2635 2848 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
2636 2849 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
2637 2850 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
2638 2851 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
2639 2852 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
2640 2853 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
2641 2854 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
2642 2855 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
2643 2856 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
2644 2857 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
2645 2858 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
2646 2859 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
2647 2860 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
2648 2861 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
2649 2862 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
2650 2863 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
2651 2864 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
2652 2865 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
2653 2866 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
2654 2867 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
2655 2868 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
2656 2869 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
2657 2870 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
2658 2871 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
2659 2872 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
2660 2873 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
2661 2874 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
2662 2875 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
2663 2876 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
2684 2897 3.089284 GGTTTCATACCCAAAGGACTGG 58.911 50.000 0.00 0.00 41.43 4.00
2685 2898 2.492088 GTTTCATACCCAAAGGACTGGC 59.508 50.000 0.00 0.00 34.88 4.85
2686 2899 1.668826 TCATACCCAAAGGACTGGCT 58.331 50.000 0.00 0.00 34.88 4.75
2687 2900 2.840511 TCATACCCAAAGGACTGGCTA 58.159 47.619 0.00 0.00 34.88 3.93
2688 2901 2.771943 TCATACCCAAAGGACTGGCTAG 59.228 50.000 0.00 0.00 34.88 3.42
2689 2902 0.909623 TACCCAAAGGACTGGCTAGC 59.090 55.000 6.04 6.04 34.88 3.42
2690 2903 0.842467 ACCCAAAGGACTGGCTAGCT 60.842 55.000 15.72 0.00 34.88 3.32
2691 2904 0.329596 CCCAAAGGACTGGCTAGCTT 59.670 55.000 15.72 0.00 34.88 3.74
2692 2905 1.272147 CCCAAAGGACTGGCTAGCTTT 60.272 52.381 15.72 2.98 34.88 3.51
2693 2906 2.519013 CCAAAGGACTGGCTAGCTTTT 58.481 47.619 15.72 0.00 0.00 2.27
2694 2907 3.561313 CCCAAAGGACTGGCTAGCTTTTA 60.561 47.826 15.72 0.00 34.88 1.52
2695 2908 3.440522 CCAAAGGACTGGCTAGCTTTTAC 59.559 47.826 15.72 2.98 0.00 2.01
2696 2909 2.674796 AGGACTGGCTAGCTTTTACG 57.325 50.000 15.72 0.00 0.00 3.18
2697 2910 1.900486 AGGACTGGCTAGCTTTTACGT 59.100 47.619 15.72 0.00 0.00 3.57
2698 2911 2.302157 AGGACTGGCTAGCTTTTACGTT 59.698 45.455 15.72 0.00 0.00 3.99
2699 2912 2.415512 GGACTGGCTAGCTTTTACGTTG 59.584 50.000 15.72 0.00 0.00 4.10
2700 2913 2.415512 GACTGGCTAGCTTTTACGTTGG 59.584 50.000 15.72 0.00 0.00 3.77
2701 2914 1.130561 CTGGCTAGCTTTTACGTTGGC 59.869 52.381 15.72 0.00 0.00 4.52
2702 2915 1.271163 TGGCTAGCTTTTACGTTGGCT 60.271 47.619 15.72 1.12 38.62 4.75
2703 2916 1.397343 GGCTAGCTTTTACGTTGGCTC 59.603 52.381 15.72 0.00 36.40 4.70
2704 2917 1.060698 GCTAGCTTTTACGTTGGCTCG 59.939 52.381 7.70 0.00 36.40 5.03
2705 2918 1.060698 CTAGCTTTTACGTTGGCTCGC 59.939 52.381 0.00 0.00 36.40 5.03
2706 2919 1.154282 GCTTTTACGTTGGCTCGCC 60.154 57.895 0.00 0.00 0.00 5.54
2707 2920 1.847890 GCTTTTACGTTGGCTCGCCA 61.848 55.000 6.52 6.52 45.63 5.69
2717 2930 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2718 2931 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2719 2932 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2720 2933 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2721 2934 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2722 2935 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
2723 2936 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2724 2937 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
2725 2938 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
2726 2939 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
2727 2940 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
2728 2941 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
2729 2942 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
2730 2943 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
2731 2944 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
2732 2945 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
2733 2946 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
2734 2947 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
2735 2948 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
2736 2949 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
2737 2950 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
2738 2951 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
2739 2952 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
2740 2953 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
2741 2954 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
2749 2962 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
2750 2963 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
2751 2964 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
2752 2965 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
2753 2966 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
2754 2967 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
2755 2968 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
2756 2969 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
2757 2970 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
2758 2971 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
2759 2972 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
2760 2973 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
2761 2974 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
2762 2975 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
2765 2978 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
2766 2979 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
2767 2980 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
2768 2981 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
2769 2982 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
2770 2983 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
2771 2984 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
2772 2985 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
2773 2986 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
2774 2987 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
2775 2988 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
2776 2989 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
2777 2990 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
2778 2991 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
2779 2992 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
2780 2993 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
2781 2994 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
2782 2995 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
2783 2996 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
2784 2997 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
2785 2998 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
2786 2999 3.244630 CCCATCCTAGTACTACTCTCGCT 60.245 52.174 0.00 0.00 0.00 4.93
2787 3000 3.998341 CCATCCTAGTACTACTCTCGCTC 59.002 52.174 0.00 0.00 0.00 5.03
2788 3001 4.503469 CCATCCTAGTACTACTCTCGCTCA 60.503 50.000 0.00 0.00 0.00 4.26
2789 3002 4.750021 TCCTAGTACTACTCTCGCTCAA 57.250 45.455 0.00 0.00 0.00 3.02
2790 3003 5.095145 TCCTAGTACTACTCTCGCTCAAA 57.905 43.478 0.00 0.00 0.00 2.69
2791 3004 5.682659 TCCTAGTACTACTCTCGCTCAAAT 58.317 41.667 0.00 0.00 0.00 2.32
2792 3005 5.527951 TCCTAGTACTACTCTCGCTCAAATG 59.472 44.000 0.00 0.00 0.00 2.32
2793 3006 4.640789 AGTACTACTCTCGCTCAAATGG 57.359 45.455 0.00 0.00 0.00 3.16
2794 3007 2.969628 ACTACTCTCGCTCAAATGGG 57.030 50.000 0.00 0.00 0.00 4.00
2795 3008 2.180276 ACTACTCTCGCTCAAATGGGT 58.820 47.619 0.00 0.00 0.00 4.51
2796 3009 2.567615 ACTACTCTCGCTCAAATGGGTT 59.432 45.455 0.00 0.00 0.00 4.11
2797 3010 2.568623 ACTCTCGCTCAAATGGGTTT 57.431 45.000 0.00 0.00 0.00 3.27
2798 3011 2.427506 ACTCTCGCTCAAATGGGTTTC 58.572 47.619 0.00 0.00 0.00 2.78
2799 3012 2.224523 ACTCTCGCTCAAATGGGTTTCA 60.225 45.455 0.00 0.00 0.00 2.69
2800 3013 3.012518 CTCTCGCTCAAATGGGTTTCAT 58.987 45.455 0.00 0.00 37.79 2.57
2801 3014 4.191544 CTCTCGCTCAAATGGGTTTCATA 58.808 43.478 0.00 0.00 34.44 2.15
2802 3015 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
2803 3016 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
2813 3026 2.654863 GGTTTCATACCCATGGGACTG 58.345 52.381 38.07 29.36 41.43 3.51
2814 3027 2.654863 GTTTCATACCCATGGGACTGG 58.345 52.381 38.07 21.65 38.96 4.00
2815 3028 0.550914 TTCATACCCATGGGACTGGC 59.449 55.000 38.07 0.00 38.96 4.85
2816 3029 0.327480 TCATACCCATGGGACTGGCT 60.327 55.000 38.07 16.38 38.96 4.75
2817 3030 1.061735 TCATACCCATGGGACTGGCTA 60.062 52.381 38.07 18.16 38.96 3.93
2818 3031 1.349026 CATACCCATGGGACTGGCTAG 59.651 57.143 38.07 13.17 38.96 3.42
2819 3032 0.341961 TACCCATGGGACTGGCTAGT 59.658 55.000 38.07 13.98 40.66 2.57
2820 3033 0.550147 ACCCATGGGACTGGCTAGTT 60.550 55.000 38.07 7.69 37.25 2.24
2821 3034 0.625849 CCCATGGGACTGGCTAGTTT 59.374 55.000 28.27 0.00 37.25 2.66
2822 3035 1.005924 CCCATGGGACTGGCTAGTTTT 59.994 52.381 28.27 0.00 37.25 2.43
2823 3036 2.557452 CCCATGGGACTGGCTAGTTTTT 60.557 50.000 28.27 0.00 37.25 1.94
2824 3037 3.308832 CCCATGGGACTGGCTAGTTTTTA 60.309 47.826 28.27 0.00 37.25 1.52
2825 3038 3.694566 CCATGGGACTGGCTAGTTTTTAC 59.305 47.826 3.47 0.00 37.25 2.01
2826 3039 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
2827 3040 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
2828 3041 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
2829 3042 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
2830 3043 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
2831 3044 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
2832 3045 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
2833 3046 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
2834 3047 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
2835 3048 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
2836 3049 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
2837 3050 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
2847 3060 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2848 3061 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2849 3062 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2850 3063 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2851 3064 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2852 3065 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
2853 3066 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2854 3067 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
2855 3068 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
2856 3069 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
2857 3070 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
2858 3071 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
2859 3072 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
2860 3073 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
2861 3074 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
2862 3075 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
2863 3076 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
2864 3077 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
2865 3078 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
2866 3079 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
2867 3080 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
2868 3081 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
2900 3113 5.105797 GCAGTATGGAAATCACACCATTCAA 60.106 40.000 0.00 0.00 43.30 2.69
2972 3185 3.225940 TCATTACATGCACCACCAAACA 58.774 40.909 0.00 0.00 0.00 2.83
2979 3192 2.226330 TGCACCACCAAACAGATGTAC 58.774 47.619 0.00 0.00 0.00 2.90
3011 3224 4.021544 GGATGTGCCAACAAAAATCCACTA 60.022 41.667 0.00 0.00 40.46 2.74
3076 3289 3.614616 GCCTCACATTTCTCTCTGTTACG 59.385 47.826 0.00 0.00 0.00 3.18
3146 3359 6.614694 TGGCAACATTAAGTTACTCCTAGA 57.385 37.500 0.00 0.00 46.17 2.43
3188 3401 8.249638 TGCACAAAAACAAGTATATGTATGCAT 58.750 29.630 3.79 3.79 39.03 3.96
3213 3426 4.491234 ACGCAAATTCATCAACGGTTAA 57.509 36.364 0.00 0.00 0.00 2.01
3214 3427 4.472286 ACGCAAATTCATCAACGGTTAAG 58.528 39.130 0.00 0.00 0.00 1.85
3215 3428 4.023536 ACGCAAATTCATCAACGGTTAAGT 60.024 37.500 0.00 0.00 0.00 2.24
3216 3429 4.553429 CGCAAATTCATCAACGGTTAAGTC 59.447 41.667 0.00 0.00 0.00 3.01
3217 3430 5.457140 GCAAATTCATCAACGGTTAAGTCA 58.543 37.500 0.00 0.00 0.00 3.41
3218 3431 6.092748 GCAAATTCATCAACGGTTAAGTCAT 58.907 36.000 0.00 0.00 0.00 3.06
3219 3432 6.586082 GCAAATTCATCAACGGTTAAGTCATT 59.414 34.615 0.00 0.00 0.00 2.57
3220 3433 7.753132 GCAAATTCATCAACGGTTAAGTCATTA 59.247 33.333 0.00 0.00 0.00 1.90
3221 3434 9.061610 CAAATTCATCAACGGTTAAGTCATTAC 57.938 33.333 0.00 0.00 0.00 1.89
4029 4254 9.680315 CTCCATAACTCTAACTTCCTATTTACG 57.320 37.037 0.00 0.00 0.00 3.18
4030 4255 8.636213 TCCATAACTCTAACTTCCTATTTACGG 58.364 37.037 0.00 0.00 0.00 4.02
4031 4256 8.419442 CCATAACTCTAACTTCCTATTTACGGT 58.581 37.037 0.00 0.00 0.00 4.83
4032 4257 9.813446 CATAACTCTAACTTCCTATTTACGGTT 57.187 33.333 0.00 0.00 0.00 4.44
4089 4315 4.443457 GCCATACTGAGCTCTGGTTTCATA 60.443 45.833 22.75 7.11 0.00 2.15
4094 4320 8.680903 CATACTGAGCTCTGGTTTCATATTTTT 58.319 33.333 22.75 1.84 0.00 1.94
4095 4321 9.905713 ATACTGAGCTCTGGTTTCATATTTTTA 57.094 29.630 22.75 3.88 0.00 1.52
4338 4566 6.374053 GCCATGCAAATTACCATTTACCTTTT 59.626 34.615 0.00 0.00 30.90 2.27
4366 4599 6.179756 TCAATCTACATGGTGCTGTATTTGT 58.820 36.000 0.00 0.00 32.26 2.83
4480 4714 8.416329 AGCAAGTATGTCATTTCTCTTTTTGTT 58.584 29.630 0.00 0.00 0.00 2.83
4489 4723 6.910433 TCATTTCTCTTTTTGTTCGTGTAAGC 59.090 34.615 0.00 0.00 0.00 3.09
4512 4851 6.365247 AGCGTGTGGAAATATGTTATATCGTC 59.635 38.462 0.00 0.00 0.00 4.20
4557 4896 9.442047 ACTTCCTTTATTGTGATTTAGTCTCTG 57.558 33.333 0.00 0.00 0.00 3.35
4570 4909 3.651803 AGTCTCTGTTTTCTGGAGTCG 57.348 47.619 0.00 0.00 0.00 4.18
4701 5050 0.540923 GAGCTTCTGATGGGCTGAGT 59.459 55.000 5.32 0.00 36.37 3.41
4713 5062 2.562298 TGGGCTGAGTAAAAATGCCTTG 59.438 45.455 0.00 0.00 42.84 3.61
4981 5330 4.265073 GCAGAGGTTCTGGTTATGACAAT 58.735 43.478 8.06 0.00 44.43 2.71
4991 5340 7.340122 TCTGGTTATGACAATGTTGTTCAAA 57.660 32.000 0.00 0.00 42.43 2.69
5175 5524 8.498358 CATTTTAGGCTGGAGAAATTTTGTTTC 58.502 33.333 0.00 0.00 0.00 2.78
5178 5527 4.099419 AGGCTGGAGAAATTTTGTTTCGTT 59.901 37.500 0.00 0.00 33.86 3.85
5232 5581 0.250727 TTTCTTTCCTGCACGAGGGG 60.251 55.000 0.00 0.00 43.06 4.79
5272 5806 9.935241 GACAGATGACACATACTATATGGATTT 57.065 33.333 0.00 0.00 0.00 2.17
5431 5965 3.583054 CATGACCTGCATTGAGGGT 57.417 52.632 0.00 0.00 37.45 4.34
5439 6060 4.677182 ACCTGCATTGAGGGTAAAAGAAT 58.323 39.130 0.00 0.00 37.45 2.40
5589 6214 5.623824 GCAGGATAGTTTTCTACTCGTTGGA 60.624 44.000 0.00 0.00 38.33 3.53
5694 6320 4.227134 CCCCATGGCGACGAGGAG 62.227 72.222 6.09 0.00 0.00 3.69
5695 6321 4.899239 CCCATGGCGACGAGGAGC 62.899 72.222 6.09 0.00 0.00 4.70
5696 6322 4.147449 CCATGGCGACGAGGAGCA 62.147 66.667 0.00 0.00 34.54 4.26
5907 6537 3.367630 CGCTTTTGTTGTATCATTTGGGC 59.632 43.478 0.00 0.00 0.00 5.36
5938 6568 4.953579 GCATAAAGGGAGGACCATGTTAAA 59.046 41.667 0.00 0.00 43.89 1.52
5939 6569 5.420739 GCATAAAGGGAGGACCATGTTAAAA 59.579 40.000 0.00 0.00 43.89 1.52
5940 6570 6.071051 GCATAAAGGGAGGACCATGTTAAAAA 60.071 38.462 0.00 0.00 43.89 1.94
5983 6613 5.049680 CCGTTGTGCAGTATTGTAACTCTTT 60.050 40.000 0.00 0.00 0.00 2.52
5984 6614 6.427150 CGTTGTGCAGTATTGTAACTCTTTT 58.573 36.000 0.00 0.00 0.00 2.27
5985 6615 6.356977 CGTTGTGCAGTATTGTAACTCTTTTG 59.643 38.462 0.00 0.00 0.00 2.44
5988 6618 8.840833 TGTGCAGTATTGTAACTCTTTTGATA 57.159 30.769 0.00 0.00 0.00 2.15
6080 8318 2.168326 TGTTGCGAATTGAGAGCTCA 57.832 45.000 17.77 0.00 37.91 4.26
6082 8320 1.800586 GTTGCGAATTGAGAGCTCACA 59.199 47.619 17.77 13.81 39.66 3.58
6083 8321 2.391616 TGCGAATTGAGAGCTCACAT 57.608 45.000 17.77 1.16 39.66 3.21
6090 8328 4.669206 ATTGAGAGCTCACATGTCTAGG 57.331 45.455 17.77 0.00 39.66 3.02
6107 8345 5.130477 TGTCTAGGTTCTTTGAGGTGAACTT 59.870 40.000 0.00 0.00 41.42 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 5.919755 TGTTAGTGTTCAACCACATGTAGA 58.080 37.500 0.00 0.00 37.82 2.59
129 132 1.006162 GGTGAGACCACTAGGAGAGGT 59.994 57.143 0.00 0.00 41.99 3.85
284 291 2.028112 TCGCTTGTCCTAGCTGTGATTT 60.028 45.455 0.00 0.00 39.03 2.17
303 310 4.288531 GTCCTCTGTCCGTGTATTATTCG 58.711 47.826 0.00 0.00 0.00 3.34
371 378 0.470268 GGAGGGACCGCCTCTTCTAT 60.470 60.000 3.66 0.00 34.95 1.98
430 437 2.358737 GTTGTCTGTCCCCTGCGG 60.359 66.667 0.00 0.00 0.00 5.69
439 446 4.699925 TTTGCTAACTAGGGTTGTCTGT 57.300 40.909 0.00 0.00 36.92 3.41
462 469 2.740904 CGTAATTCTTCCTTCGGACCCC 60.741 54.545 0.00 0.00 0.00 4.95
463 470 2.547826 CGTAATTCTTCCTTCGGACCC 58.452 52.381 0.00 0.00 0.00 4.46
465 472 1.931841 GCCGTAATTCTTCCTTCGGAC 59.068 52.381 5.60 0.00 40.29 4.79
472 482 0.108041 TCCCGTGCCGTAATTCTTCC 60.108 55.000 0.00 0.00 0.00 3.46
475 485 1.663695 CATTCCCGTGCCGTAATTCT 58.336 50.000 0.00 0.00 0.00 2.40
509 519 2.808206 CCCCTCAGTACGCATCCCC 61.808 68.421 0.00 0.00 0.00 4.81
665 675 3.364549 CCAGTCTCTCTCTTGATCACCT 58.635 50.000 0.00 0.00 0.00 4.00
672 682 1.206849 GCCTTCCCAGTCTCTCTCTTG 59.793 57.143 0.00 0.00 0.00 3.02
677 692 2.726351 CCCGCCTTCCCAGTCTCTC 61.726 68.421 0.00 0.00 0.00 3.20
690 705 2.199236 CAATTCGAGTAAGTACCCGCC 58.801 52.381 0.00 0.00 0.00 6.13
739 758 1.000052 GATTCGATCCTTCTCCGTCCC 60.000 57.143 0.00 0.00 0.00 4.46
818 837 3.202001 GCGCCATTAGAAGCCGCA 61.202 61.111 0.00 0.00 0.00 5.69
852 871 3.671459 TCGATGCGGCAATAACGTAATAG 59.329 43.478 6.82 0.00 0.00 1.73
863 882 0.458716 TTACGTGATCGATGCGGCAA 60.459 50.000 18.94 11.65 40.62 4.52
864 883 0.458716 TTTACGTGATCGATGCGGCA 60.459 50.000 18.94 4.58 40.62 5.69
867 886 3.834435 TTCATTTACGTGATCGATGCG 57.166 42.857 0.54 10.10 40.62 4.73
884 903 5.334569 GCAGCTGGAAAACGTATACTTTTCA 60.335 40.000 25.22 15.32 38.75 2.69
889 908 2.268298 CGCAGCTGGAAAACGTATACT 58.732 47.619 17.12 0.00 0.00 2.12
890 909 1.997606 ACGCAGCTGGAAAACGTATAC 59.002 47.619 17.12 0.00 34.79 1.47
891 910 2.373540 ACGCAGCTGGAAAACGTATA 57.626 45.000 17.12 0.00 34.79 1.47
892 911 1.519408 AACGCAGCTGGAAAACGTAT 58.481 45.000 17.12 4.58 35.64 3.06
960 979 0.972983 GCTGGTGAGGAGGACTAGCA 60.973 60.000 0.00 0.00 44.82 3.49
1061 1080 1.745115 CCGCAAATCCTCTCGCCAA 60.745 57.895 0.00 0.00 0.00 4.52
1214 1243 2.105821 TCCCAACATCACGAGAAAACCT 59.894 45.455 0.00 0.00 0.00 3.50
1239 1268 0.596083 CTCCACGTCTGATCATCCGC 60.596 60.000 12.51 0.00 0.00 5.54
1373 1402 7.453393 TCAGAGGTTCAGAACTAAACAATCAT 58.547 34.615 13.13 0.00 0.00 2.45
1376 1405 7.939039 TCAATCAGAGGTTCAGAACTAAACAAT 59.061 33.333 13.13 0.00 0.00 2.71
1391 1420 4.383552 GCACTAGACCAATCAATCAGAGGT 60.384 45.833 0.00 0.00 34.76 3.85
1486 1515 6.591001 TGAGTAGCAAGTTATTGATGCCATA 58.409 36.000 0.00 0.00 38.06 2.74
1524 1553 7.011482 CCTCACCAACAGTTATTGCTTACTATC 59.989 40.741 0.00 0.00 0.00 2.08
1535 1567 6.121776 TCATACAACCTCACCAACAGTTAT 57.878 37.500 0.00 0.00 0.00 1.89
1554 1586 2.644299 AGGATCCAAATCGCCCATCATA 59.356 45.455 15.82 0.00 32.24 2.15
1596 1628 0.384309 TACTCGCCACCGCAATCTAG 59.616 55.000 0.00 0.00 34.03 2.43
1880 1912 4.202430 ACGGTGTCCTAACTTCCAAAGAAT 60.202 41.667 0.00 0.00 0.00 2.40
1960 1993 4.023707 GCATGTGCTAACTTTGAAGTCACT 60.024 41.667 12.49 0.00 36.76 3.41
1968 2001 5.772521 ACTAAAAGGCATGTGCTAACTTTG 58.227 37.500 4.84 0.00 41.70 2.77
1983 2016 3.988379 TGCTTGACTGCAACTAAAAGG 57.012 42.857 0.00 0.00 40.29 3.11
2019 2052 8.076178 GCACCTCGCATCATTTACTATATTTTT 58.924 33.333 0.00 0.00 41.79 1.94
2093 2291 7.307493 TGTTGAATGTATAACATCTGACAGC 57.693 36.000 0.00 0.00 37.97 4.40
2128 2327 5.581605 ACAACATCGCTTAATTGGCTATTG 58.418 37.500 4.39 0.00 0.00 1.90
2133 2332 3.987220 ACAAACAACATCGCTTAATTGGC 59.013 39.130 0.00 0.00 0.00 4.52
2152 2354 3.745975 CGTCAAACCATAAGCAGAGACAA 59.254 43.478 0.00 0.00 0.00 3.18
2180 2382 5.984695 GGTATATGAGCTCATCTACCACA 57.015 43.478 40.11 23.90 46.70 4.17
2286 2488 0.473886 AGGTGGGCTGGAGTTACACT 60.474 55.000 0.00 0.00 32.88 3.55
2334 2536 1.068474 GGGAAACGTGTCACTCATCG 58.932 55.000 8.27 0.00 0.00 3.84
2369 2571 4.785346 AACAGAGCCCAAGATACATGAT 57.215 40.909 0.00 0.00 0.00 2.45
2376 2578 2.664402 ACACAAACAGAGCCCAAGAT 57.336 45.000 0.00 0.00 0.00 2.40
2479 2681 7.011109 CCGGATAACAAAATGAACTACCAGTAG 59.989 40.741 0.00 3.25 39.04 2.57
2503 2715 5.776744 ACTACCTACAAACTGTTAGTTCCG 58.223 41.667 0.00 0.00 37.47 4.30
2548 2761 9.445878 GGACAAAAGGCTTAGTAAGTAAGTATT 57.554 33.333 11.51 0.00 40.47 1.89
2549 2762 8.045507 GGGACAAAAGGCTTAGTAAGTAAGTAT 58.954 37.037 11.51 0.00 40.47 2.12
2550 2763 7.016465 TGGGACAAAAGGCTTAGTAAGTAAGTA 59.984 37.037 11.51 0.00 36.83 2.24
2551 2764 6.183361 TGGGACAAAAGGCTTAGTAAGTAAGT 60.183 38.462 11.51 2.81 36.83 2.24
2552 2765 6.235664 TGGGACAAAAGGCTTAGTAAGTAAG 58.764 40.000 11.51 0.00 37.30 2.34
2553 2766 6.190346 TGGGACAAAAGGCTTAGTAAGTAA 57.810 37.500 11.51 0.00 31.92 2.24
2554 2767 5.829062 TGGGACAAAAGGCTTAGTAAGTA 57.171 39.130 11.51 0.00 31.92 2.24
2555 2768 4.717279 TGGGACAAAAGGCTTAGTAAGT 57.283 40.909 11.51 0.00 31.92 2.24
2575 2788 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2576 2789 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2577 2790 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
2578 2791 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
2579 2792 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
2580 2793 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
2581 2794 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
2582 2795 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
2583 2796 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
2584 2797 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
2585 2798 3.908103 TGGTTTCATATCTAGCCTACCCC 59.092 47.826 0.00 0.00 0.00 4.95
2586 2799 5.763876 ATGGTTTCATATCTAGCCTACCC 57.236 43.478 0.00 0.00 0.00 3.69
2587 2800 7.224297 TGAAATGGTTTCATATCTAGCCTACC 58.776 38.462 1.24 0.00 44.21 3.18
2600 2813 3.485463 AGTCCTCGTGAAATGGTTTCA 57.515 42.857 1.24 1.24 46.68 2.69
2601 2814 3.188667 GGAAGTCCTCGTGAAATGGTTTC 59.811 47.826 0.00 0.00 40.08 2.78
2602 2815 3.146847 GGAAGTCCTCGTGAAATGGTTT 58.853 45.455 0.00 0.00 0.00 3.27
2603 2816 2.552373 GGGAAGTCCTCGTGAAATGGTT 60.552 50.000 0.00 0.00 35.95 3.67
2604 2817 1.003233 GGGAAGTCCTCGTGAAATGGT 59.997 52.381 0.00 0.00 35.95 3.55
2605 2818 1.003118 TGGGAAGTCCTCGTGAAATGG 59.997 52.381 0.00 0.00 36.20 3.16
2606 2819 2.350522 CTGGGAAGTCCTCGTGAAATG 58.649 52.381 0.00 0.00 36.20 2.32
2607 2820 1.279271 CCTGGGAAGTCCTCGTGAAAT 59.721 52.381 0.00 0.00 36.20 2.17
2608 2821 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
2609 2822 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
2610 2823 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
2611 2824 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
2612 2825 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
2613 2826 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
2614 2827 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
2615 2828 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
2616 2829 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
2617 2830 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
2618 2831 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
2630 2843 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
2631 2844 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
2632 2845 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
2633 2846 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
2634 2847 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
2635 2848 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
2636 2849 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
2637 2850 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
2638 2851 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
2639 2852 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
2640 2853 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
2641 2854 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
2642 2855 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
2643 2856 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
2663 2876 6.882412 AGCCAGTCCTTTGGGTATGAAACC 62.882 50.000 0.00 0.00 46.57 3.27
2664 2877 2.492088 GCCAGTCCTTTGGGTATGAAAC 59.508 50.000 0.00 0.00 38.72 2.78
2665 2878 2.378547 AGCCAGTCCTTTGGGTATGAAA 59.621 45.455 0.00 0.00 46.57 2.69
2666 2879 1.992557 AGCCAGTCCTTTGGGTATGAA 59.007 47.619 0.00 0.00 46.57 2.57
2667 2880 1.668826 AGCCAGTCCTTTGGGTATGA 58.331 50.000 0.00 0.00 46.57 2.15
2668 2881 2.746472 GCTAGCCAGTCCTTTGGGTATG 60.746 54.545 2.29 1.85 46.74 2.39
2669 2882 1.490910 GCTAGCCAGTCCTTTGGGTAT 59.509 52.381 2.29 0.00 46.74 2.73
2670 2883 0.909623 GCTAGCCAGTCCTTTGGGTA 59.090 55.000 2.29 4.17 46.57 3.69
2672 2885 0.329596 AAGCTAGCCAGTCCTTTGGG 59.670 55.000 12.13 0.00 38.72 4.12
2673 2886 2.206576 AAAGCTAGCCAGTCCTTTGG 57.793 50.000 12.13 0.00 41.35 3.28
2674 2887 3.125316 CGTAAAAGCTAGCCAGTCCTTTG 59.875 47.826 12.13 0.00 0.00 2.77
2675 2888 3.244457 ACGTAAAAGCTAGCCAGTCCTTT 60.244 43.478 12.13 0.91 0.00 3.11
2676 2889 2.302157 ACGTAAAAGCTAGCCAGTCCTT 59.698 45.455 12.13 0.00 0.00 3.36
2677 2890 1.900486 ACGTAAAAGCTAGCCAGTCCT 59.100 47.619 12.13 0.00 0.00 3.85
2678 2891 2.381725 ACGTAAAAGCTAGCCAGTCC 57.618 50.000 12.13 0.00 0.00 3.85
2679 2892 2.415512 CCAACGTAAAAGCTAGCCAGTC 59.584 50.000 12.13 0.00 0.00 3.51
2680 2893 2.423577 CCAACGTAAAAGCTAGCCAGT 58.576 47.619 12.13 0.00 0.00 4.00
2681 2894 1.130561 GCCAACGTAAAAGCTAGCCAG 59.869 52.381 12.13 0.00 0.00 4.85
2682 2895 1.161843 GCCAACGTAAAAGCTAGCCA 58.838 50.000 12.13 0.00 0.00 4.75
2683 2896 1.397343 GAGCCAACGTAAAAGCTAGCC 59.603 52.381 12.13 0.00 35.23 3.93
2684 2897 1.060698 CGAGCCAACGTAAAAGCTAGC 59.939 52.381 6.62 6.62 35.23 3.42
2685 2898 1.060698 GCGAGCCAACGTAAAAGCTAG 59.939 52.381 0.00 0.00 35.23 3.42
2686 2899 1.073177 GCGAGCCAACGTAAAAGCTA 58.927 50.000 0.00 0.00 35.23 3.32
2687 2900 1.574702 GGCGAGCCAACGTAAAAGCT 61.575 55.000 9.58 0.00 38.56 3.74
2688 2901 1.154282 GGCGAGCCAACGTAAAAGC 60.154 57.895 9.58 0.00 35.81 3.51
2689 2902 2.240230 TGGCGAGCCAACGTAAAAG 58.760 52.632 15.24 0.00 44.12 2.27
2690 2903 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
2701 2914 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2702 2915 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2703 2916 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2704 2917 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
2705 2918 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
2706 2919 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
2707 2920 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
2708 2921 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
2709 2922 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
2710 2923 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
2711 2924 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
2712 2925 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
2713 2926 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
2714 2927 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
2715 2928 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
2716 2929 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
2717 2930 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
2718 2931 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
2719 2932 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
2730 2943 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
2731 2944 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
2732 2945 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
2733 2946 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
2734 2947 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
2735 2948 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
2736 2949 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
2737 2950 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
2738 2951 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
2739 2952 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
2740 2953 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
2741 2954 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
2742 2955 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
2743 2956 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
2744 2957 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
2745 2958 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
2746 2959 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
2747 2960 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
2748 2961 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
2760 2973 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
2761 2974 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
2762 2975 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
2763 2976 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
2764 2977 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
2765 2978 3.998341 GAGCGAGAGTAGTACTAGGATGG 59.002 52.174 1.87 0.00 0.00 3.51
2766 2979 4.633175 TGAGCGAGAGTAGTACTAGGATG 58.367 47.826 1.87 0.00 0.00 3.51
2767 2980 4.959560 TGAGCGAGAGTAGTACTAGGAT 57.040 45.455 1.87 0.00 0.00 3.24
2768 2981 4.750021 TTGAGCGAGAGTAGTACTAGGA 57.250 45.455 1.87 0.00 0.00 2.94
2769 2982 5.278071 CCATTTGAGCGAGAGTAGTACTAGG 60.278 48.000 1.87 0.00 0.00 3.02
2770 2983 5.278071 CCCATTTGAGCGAGAGTAGTACTAG 60.278 48.000 1.87 0.00 0.00 2.57
2771 2984 4.579340 CCCATTTGAGCGAGAGTAGTACTA 59.421 45.833 1.88 0.00 0.00 1.82
2772 2985 3.381908 CCCATTTGAGCGAGAGTAGTACT 59.618 47.826 1.37 1.37 0.00 2.73
2773 2986 3.130693 ACCCATTTGAGCGAGAGTAGTAC 59.869 47.826 0.00 0.00 0.00 2.73
2774 2987 3.362706 ACCCATTTGAGCGAGAGTAGTA 58.637 45.455 0.00 0.00 0.00 1.82
2775 2988 2.180276 ACCCATTTGAGCGAGAGTAGT 58.820 47.619 0.00 0.00 0.00 2.73
2776 2989 2.969628 ACCCATTTGAGCGAGAGTAG 57.030 50.000 0.00 0.00 0.00 2.57
2777 2990 3.007506 TGAAACCCATTTGAGCGAGAGTA 59.992 43.478 0.00 0.00 0.00 2.59
2778 2991 2.224523 TGAAACCCATTTGAGCGAGAGT 60.225 45.455 0.00 0.00 0.00 3.24
2779 2992 2.426522 TGAAACCCATTTGAGCGAGAG 58.573 47.619 0.00 0.00 0.00 3.20
2780 2993 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
2781 2994 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
2782 2995 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
2783 2996 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
2794 3007 2.654863 CCAGTCCCATGGGTATGAAAC 58.345 52.381 30.28 19.33 36.36 2.78
2795 3008 1.064017 GCCAGTCCCATGGGTATGAAA 60.064 52.381 30.28 7.14 40.97 2.69
2796 3009 0.550914 GCCAGTCCCATGGGTATGAA 59.449 55.000 30.28 7.98 40.97 2.57
2797 3010 2.230664 GCCAGTCCCATGGGTATGA 58.769 57.895 30.28 8.41 40.97 2.15
2798 3011 4.907457 GCCAGTCCCATGGGTATG 57.093 61.111 30.28 26.25 40.97 2.39
2802 3015 0.625849 AAACTAGCCAGTCCCATGGG 59.374 55.000 26.30 26.30 40.97 4.00
2803 3016 2.514458 AAAACTAGCCAGTCCCATGG 57.486 50.000 4.14 4.14 43.72 3.66
2804 3017 3.374058 CGTAAAAACTAGCCAGTCCCATG 59.626 47.826 0.00 0.00 32.29 3.66
2805 3018 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
2806 3019 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
2807 3020 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
2808 3021 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
2809 3022 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
2810 3023 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
2811 3024 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
2812 3025 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
2813 3026 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
2814 3027 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
2815 3028 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
2816 3029 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
2817 3030 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
2818 3031 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
2819 3032 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
2820 3033 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
2831 3044 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2832 3045 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2833 3046 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2834 3047 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
2835 3048 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
2836 3049 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
2837 3050 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
2838 3051 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
2839 3052 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
2840 3053 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
2841 3054 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
2842 3055 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
2843 3056 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
2844 3057 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
2845 3058 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
2846 3059 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
2847 3060 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
2848 3061 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
2849 3062 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
2850 3063 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
2851 3064 2.070650 CCCCGGGTAAAGGAGGAGG 61.071 68.421 21.85 0.00 0.00 4.30
2852 3065 2.743179 GCCCCGGGTAAAGGAGGAG 61.743 68.421 21.85 0.00 0.00 3.69
2853 3066 2.689771 GCCCCGGGTAAAGGAGGA 60.690 66.667 21.85 0.00 0.00 3.71
2854 3067 0.984432 TAAGCCCCGGGTAAAGGAGG 60.984 60.000 21.85 1.58 0.00 4.30
2855 3068 0.913924 TTAAGCCCCGGGTAAAGGAG 59.086 55.000 21.85 2.46 0.00 3.69
2856 3069 1.213430 CATTAAGCCCCGGGTAAAGGA 59.787 52.381 21.85 0.36 0.00 3.36
2857 3070 1.687563 CATTAAGCCCCGGGTAAAGG 58.312 55.000 21.85 4.20 0.00 3.11
2858 3071 1.029681 GCATTAAGCCCCGGGTAAAG 58.970 55.000 21.85 9.87 37.23 1.85
2859 3072 0.331954 TGCATTAAGCCCCGGGTAAA 59.668 50.000 21.85 8.15 44.83 2.01
2860 3073 0.106918 CTGCATTAAGCCCCGGGTAA 60.107 55.000 21.85 12.34 44.83 2.85
2861 3074 1.276140 ACTGCATTAAGCCCCGGGTA 61.276 55.000 21.85 1.64 44.83 3.69
2862 3075 1.276140 TACTGCATTAAGCCCCGGGT 61.276 55.000 21.85 2.88 44.83 5.28
2863 3076 0.110486 ATACTGCATTAAGCCCCGGG 59.890 55.000 15.80 15.80 44.83 5.73
2864 3077 1.238439 CATACTGCATTAAGCCCCGG 58.762 55.000 0.00 0.00 44.83 5.73
2865 3078 1.202758 TCCATACTGCATTAAGCCCCG 60.203 52.381 0.00 0.00 44.83 5.73
2866 3079 2.656947 TCCATACTGCATTAAGCCCC 57.343 50.000 0.00 0.00 44.83 5.80
2867 3080 4.584325 TGATTTCCATACTGCATTAAGCCC 59.416 41.667 0.00 0.00 44.83 5.19
2868 3081 5.067674 TGTGATTTCCATACTGCATTAAGCC 59.932 40.000 0.00 0.00 44.83 4.35
2960 3173 1.196808 CGTACATCTGTTTGGTGGTGC 59.803 52.381 0.00 0.00 0.00 5.01
2972 3185 5.509840 GGCACATCCTCTTATTCGTACATCT 60.510 44.000 0.00 0.00 0.00 2.90
2979 3192 3.270027 TGTTGGCACATCCTCTTATTCG 58.730 45.455 0.00 0.00 39.30 3.34
3011 3224 3.282021 GAGTGGTGACCATGCACATAAT 58.718 45.455 7.94 0.00 40.52 1.28
3146 3359 2.034124 GTGCACCTGCCCATAATTCAT 58.966 47.619 5.22 0.00 41.18 2.57
3188 3401 4.861210 ACCGTTGATGAATTTGCGTTAAA 58.139 34.783 0.00 0.00 0.00 1.52
3213 3426 4.707448 TGTTGTTGTTGTTGGGTAATGACT 59.293 37.500 0.00 0.00 0.00 3.41
3214 3427 5.000012 TGTTGTTGTTGTTGGGTAATGAC 58.000 39.130 0.00 0.00 0.00 3.06
3215 3428 5.047306 TGTTGTTGTTGTTGTTGGGTAATGA 60.047 36.000 0.00 0.00 0.00 2.57
3216 3429 5.171476 TGTTGTTGTTGTTGTTGGGTAATG 58.829 37.500 0.00 0.00 0.00 1.90
3217 3430 5.407407 TGTTGTTGTTGTTGTTGGGTAAT 57.593 34.783 0.00 0.00 0.00 1.89
3218 3431 4.866508 TGTTGTTGTTGTTGTTGGGTAA 57.133 36.364 0.00 0.00 0.00 2.85
3219 3432 4.038763 TGTTGTTGTTGTTGTTGTTGGGTA 59.961 37.500 0.00 0.00 0.00 3.69
3220 3433 3.181465 TGTTGTTGTTGTTGTTGTTGGGT 60.181 39.130 0.00 0.00 0.00 4.51
3221 3434 3.393800 TGTTGTTGTTGTTGTTGTTGGG 58.606 40.909 0.00 0.00 0.00 4.12
4029 4254 8.480501 TCTATACTTGTGGGTAATGACTTAACC 58.519 37.037 0.00 0.00 43.92 2.85
4030 4255 9.880157 TTCTATACTTGTGGGTAATGACTTAAC 57.120 33.333 0.00 0.00 0.00 2.01
4033 4258 9.614792 GAATTCTATACTTGTGGGTAATGACTT 57.385 33.333 0.00 0.00 0.00 3.01
4099 4325 7.500227 CCTTGAAGAGCATATATCCAAGTTGAA 59.500 37.037 3.87 0.00 0.00 2.69
4280 4506 6.749578 CACAAACATACTTTGCACTGTGTAAA 59.250 34.615 20.20 20.20 32.17 2.01
4338 4566 7.701539 ATACAGCACCATGTAGATTGAAAAA 57.298 32.000 0.00 0.00 38.96 1.94
4480 4714 2.157834 ATTTCCACACGCTTACACGA 57.842 45.000 0.00 0.00 36.70 4.35
4489 4723 7.619366 GCAGACGATATAACATATTTCCACACG 60.619 40.741 0.00 0.00 0.00 4.49
4512 4851 7.820648 AGGAAGTAAAGTAATGAACATTGCAG 58.179 34.615 15.41 0.00 36.13 4.41
4550 4889 2.297597 CCGACTCCAGAAAACAGAGACT 59.702 50.000 0.00 0.00 0.00 3.24
4557 4896 0.721718 CGCATCCGACTCCAGAAAAC 59.278 55.000 0.00 0.00 36.29 2.43
4570 4909 2.160822 ATGACTACATGAGCGCATCC 57.839 50.000 11.47 0.00 35.21 3.51
4713 5062 1.516365 CTAGCAGCCTGGCATGATGC 61.516 60.000 22.69 22.69 44.08 3.91
4981 5330 4.203226 TGCAGTACCAGATTTGAACAACA 58.797 39.130 0.00 0.00 0.00 3.33
5018 5367 1.734655 ATCCTACCCAGGCGATCAAT 58.265 50.000 0.00 0.00 42.30 2.57
5062 5411 2.417719 GATGACAACTCTTCCTGCGTT 58.582 47.619 0.00 0.00 0.00 4.84
5123 5472 7.064609 GGCCAATGTTTAAGAAGCCTTTTAATC 59.935 37.037 0.00 0.00 36.00 1.75
5175 5524 1.878953 ACAGCCTAGAAACCACAACG 58.121 50.000 0.00 0.00 0.00 4.10
5178 5527 2.489971 CGAAACAGCCTAGAAACCACA 58.510 47.619 0.00 0.00 0.00 4.17
5253 5787 8.383318 ACAAGCAAATCCATATAGTATGTGTC 57.617 34.615 6.20 0.00 0.00 3.67
5272 5806 3.132646 ACTTGGATTGCAGAAAACAAGCA 59.867 39.130 14.47 0.00 38.99 3.91
5417 5951 3.806949 TCTTTTACCCTCAATGCAGGT 57.193 42.857 0.00 0.00 37.69 4.00
5499 6120 3.941483 AGGCCTTAATTGACACAATCTCG 59.059 43.478 0.00 0.00 0.00 4.04
5589 6214 2.356382 GAGTAGCTAGTGTGCTGACGAT 59.644 50.000 5.62 0.00 43.87 3.73
5694 6320 2.086869 AGATGTTACATGTGCTGGTGC 58.913 47.619 9.11 0.00 40.20 5.01
5695 6321 2.679837 GGAGATGTTACATGTGCTGGTG 59.320 50.000 9.11 0.00 0.00 4.17
5696 6322 2.573462 AGGAGATGTTACATGTGCTGGT 59.427 45.455 15.00 0.00 0.00 4.00
5907 6537 1.686115 CCTCCCTTTATGCAACCAGGG 60.686 57.143 17.71 17.71 46.85 4.45
5950 6580 1.379977 TGCACAACGGACCCCAAAA 60.380 52.632 0.00 0.00 0.00 2.44
5983 6613 4.576873 TCGAAGCGGGCATAAAAATATCAA 59.423 37.500 0.00 0.00 0.00 2.57
5984 6614 4.130857 TCGAAGCGGGCATAAAAATATCA 58.869 39.130 0.00 0.00 0.00 2.15
5985 6615 4.378459 CCTCGAAGCGGGCATAAAAATATC 60.378 45.833 0.00 0.00 0.00 1.63
5988 6618 1.676006 CCTCGAAGCGGGCATAAAAAT 59.324 47.619 0.00 0.00 0.00 1.82
5991 6621 0.468226 ATCCTCGAAGCGGGCATAAA 59.532 50.000 0.00 0.00 30.24 1.40
5992 6622 0.033504 GATCCTCGAAGCGGGCATAA 59.966 55.000 0.00 0.00 30.24 1.90
5993 6623 0.827925 AGATCCTCGAAGCGGGCATA 60.828 55.000 0.00 0.00 30.24 3.14
5994 6624 1.690219 AAGATCCTCGAAGCGGGCAT 61.690 55.000 0.00 0.00 30.24 4.40
6080 8318 4.593206 TCACCTCAAAGAACCTAGACATGT 59.407 41.667 0.00 0.00 0.00 3.21
6082 8320 5.308237 AGTTCACCTCAAAGAACCTAGACAT 59.692 40.000 0.00 0.00 43.89 3.06
6083 8321 4.654262 AGTTCACCTCAAAGAACCTAGACA 59.346 41.667 0.00 0.00 43.89 3.41
6090 8328 2.034685 GGGCAAGTTCACCTCAAAGAAC 59.965 50.000 0.00 0.00 43.33 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.