Multiple sequence alignment - TraesCS1D01G117700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G117700 chr1D 100.000 3109 0 0 1 3109 113995860 113992752 0.000000e+00 5742.0
1 TraesCS1D01G117700 chr1D 93.694 222 12 1 2890 3109 131440393 131440172 6.430000e-87 331.0
2 TraesCS1D01G117700 chr1B 90.806 1762 105 14 597 2345 174252791 174251074 0.000000e+00 2303.0
3 TraesCS1D01G117700 chr1B 87.629 485 46 7 2342 2825 174249690 174249219 4.530000e-153 551.0
4 TraesCS1D01G117700 chr1B 96.452 310 11 0 230 539 174253110 174252801 2.140000e-141 512.0
5 TraesCS1D01G117700 chr1B 90.000 180 18 0 2677 2856 174340709 174340530 1.860000e-57 233.0
6 TraesCS1D01G117700 chr1B 96.429 84 2 1 1 84 174253184 174253102 1.500000e-28 137.0
7 TraesCS1D01G117700 chr1B 82.781 151 21 4 241 389 169021629 169021482 2.520000e-26 130.0
8 TraesCS1D01G117700 chr1B 95.238 63 3 0 2825 2887 174226315 174226253 1.970000e-17 100.0
9 TraesCS1D01G117700 chr2D 86.556 1681 140 19 875 2536 393215285 393216898 0.000000e+00 1773.0
10 TraesCS1D01G117700 chr2D 90.383 1331 95 23 805 2122 393204665 393205975 0.000000e+00 1718.0
11 TraesCS1D01G117700 chr2D 89.721 1148 85 23 987 2122 393069612 393070738 0.000000e+00 1435.0
12 TraesCS1D01G117700 chr2D 87.531 401 40 4 2166 2557 393205967 393206366 3.650000e-124 455.0
13 TraesCS1D01G117700 chr2D 86.967 399 36 8 2166 2557 393070730 393071119 4.760000e-118 435.0
14 TraesCS1D01G117700 chr2D 93.665 221 13 1 805 1025 393069398 393069617 2.310000e-86 329.0
15 TraesCS1D01G117700 chr2D 88.764 178 19 1 2690 2866 393206354 393206531 1.880000e-52 217.0
16 TraesCS1D01G117700 chr2D 91.667 84 7 0 799 882 393213804 393213887 1.960000e-22 117.0
17 TraesCS1D01G117700 chr2D 89.011 91 9 1 712 801 393211363 393211453 9.110000e-21 111.0
18 TraesCS1D01G117700 chr2D 92.105 76 3 2 2688 2761 393071105 393071179 1.530000e-18 104.0
19 TraesCS1D01G117700 chr2D 100.000 45 0 0 2843 2887 393216915 393216959 1.990000e-12 84.2
20 TraesCS1D01G117700 chr2B 89.851 1143 85 22 986 2117 464878512 464879634 0.000000e+00 1439.0
21 TraesCS1D01G117700 chr2B 93.201 956 62 3 986 1940 464898102 464899055 0.000000e+00 1402.0
22 TraesCS1D01G117700 chr2B 87.023 393 43 4 2172 2557 464880646 464881037 1.320000e-118 436.0
23 TraesCS1D01G117700 chr2B 89.385 179 19 0 2688 2866 464881023 464881201 3.120000e-55 226.0
24 TraesCS1D01G117700 chr2B 91.057 123 11 0 109 231 489852024 489852146 1.920000e-37 167.0
25 TraesCS1D01G117700 chr2B 88.550 131 14 1 2740 2869 464901330 464901460 1.150000e-34 158.0
26 TraesCS1D01G117700 chr2B 91.954 87 7 0 714 800 464872304 464872390 4.210000e-24 122.0
27 TraesCS1D01G117700 chr2B 89.888 89 9 0 712 800 464893560 464893648 7.050000e-22 115.0
28 TraesCS1D01G117700 chr2B 88.764 89 10 0 712 800 464956613 464956701 3.280000e-20 110.0
29 TraesCS1D01G117700 chr2B 92.424 66 5 0 2688 2753 464899603 464899668 9.180000e-16 95.3
30 TraesCS1D01G117700 chr3A 91.219 968 67 6 920 1880 102435908 102436864 0.000000e+00 1301.0
31 TraesCS1D01G117700 chr3A 90.501 958 70 7 929 1880 102388646 102389588 0.000000e+00 1245.0
32 TraesCS1D01G117700 chr3A 81.086 571 61 24 1941 2484 102441053 102441603 2.230000e-111 412.0
33 TraesCS1D01G117700 chr3A 81.086 571 61 25 1941 2484 102500277 102500827 2.230000e-111 412.0
34 TraesCS1D01G117700 chr3A 80.427 562 70 24 1941 2479 102393595 102394139 2.910000e-105 392.0
35 TraesCS1D01G117700 chr3A 97.183 71 2 0 2477 2547 102454333 102454403 1.510000e-23 121.0
36 TraesCS1D01G117700 chr3A 97.183 71 2 0 2477 2547 102471521 102471591 1.510000e-23 121.0
37 TraesCS1D01G117700 chr3A 97.183 71 2 0 2477 2547 102489525 102489595 1.510000e-23 121.0
38 TraesCS1D01G117700 chr3A 97.183 71 2 0 2477 2547 102522356 102522426 1.510000e-23 121.0
39 TraesCS1D01G117700 chr2A 91.336 958 53 13 986 1940 531151380 531152310 0.000000e+00 1282.0
40 TraesCS1D01G117700 chr2A 87.500 400 42 4 2166 2557 531152476 531152875 3.650000e-124 455.0
41 TraesCS1D01G117700 chr2A 91.928 223 16 1 2889 3109 66798703 66798481 8.370000e-81 311.0
42 TraesCS1D01G117700 chr2A 88.235 68 6 1 2057 2122 531152417 531152484 2.570000e-11 80.5
43 TraesCS1D01G117700 chr3B 92.727 825 57 1 921 1742 135711360 135712184 0.000000e+00 1188.0
44 TraesCS1D01G117700 chr3B 91.576 831 61 3 921 1742 135768776 135769606 0.000000e+00 1138.0
45 TraesCS1D01G117700 chr3B 83.858 508 40 22 246 711 602233774 602234281 2.200000e-121 446.0
46 TraesCS1D01G117700 chr3B 93.421 228 11 3 2884 3109 444111104 444110879 4.970000e-88 335.0
47 TraesCS1D01G117700 chr3B 93.392 227 12 2 2885 3109 655617946 655618171 1.790000e-87 333.0
48 TraesCS1D01G117700 chr3B 87.603 121 15 0 921 1041 135808300 135808420 1.160000e-29 141.0
49 TraesCS1D01G117700 chr3D 82.540 630 74 23 1941 2550 85838183 85838796 3.550000e-144 521.0
50 TraesCS1D01G117700 chr3D 92.800 125 8 1 109 232 315463426 315463550 2.460000e-41 180.0
51 TraesCS1D01G117700 chrUn 86.094 489 46 13 230 711 95404241 95403768 9.950000e-140 507.0
52 TraesCS1D01G117700 chrUn 92.361 144 11 0 88 231 127007104 127006961 4.060000e-49 206.0
53 TraesCS1D01G117700 chr6A 84.917 484 50 8 230 712 605319241 605318780 4.690000e-128 468.0
54 TraesCS1D01G117700 chr6A 90.749 227 18 2 2886 3109 147909461 147909235 1.810000e-77 300.0
55 TraesCS1D01G117700 chr6B 94.595 222 9 2 2890 3109 560212746 560212966 1.070000e-89 340.0
56 TraesCS1D01G117700 chr6B 91.892 222 15 2 2890 3109 540567170 540566950 1.080000e-79 307.0
57 TraesCS1D01G117700 chr1A 91.928 223 16 1 2889 3109 397088646 397088868 8.370000e-81 311.0
58 TraesCS1D01G117700 chr1A 81.593 364 41 10 374 712 8118298 8117936 8.490000e-71 278.0
59 TraesCS1D01G117700 chr1A 88.785 107 12 0 241 347 8118473 8118367 7.000000e-27 132.0
60 TraesCS1D01G117700 chr5D 91.441 222 17 1 2890 3109 362308039 362308260 1.400000e-78 303.0
61 TraesCS1D01G117700 chr5D 94.118 119 7 0 585 703 514304587 514304705 6.850000e-42 182.0
62 TraesCS1D01G117700 chr5B 80.637 377 42 12 368 713 239009763 239009387 2.380000e-66 263.0
63 TraesCS1D01G117700 chr5B 82.781 151 20 5 241 389 655905542 655905396 2.520000e-26 130.0
64 TraesCS1D01G117700 chr5A 81.163 361 26 13 394 712 99014963 99014603 5.150000e-63 252.0
65 TraesCS1D01G117700 chr7D 79.683 379 38 23 368 712 115822457 115822084 1.440000e-58 237.0
66 TraesCS1D01G117700 chr4A 79.339 363 37 13 394 720 201599223 201599583 1.450000e-53 220.0
67 TraesCS1D01G117700 chr4A 86.022 93 10 3 448 539 238390508 238390598 2.550000e-16 97.1
68 TraesCS1D01G117700 chr6D 93.750 144 9 0 88 231 207943707 207943850 1.880000e-52 217.0
69 TraesCS1D01G117700 chr4B 91.870 123 10 0 109 231 657499242 657499364 4.120000e-39 172.0
70 TraesCS1D01G117700 chr4B 91.870 123 10 0 109 231 657516431 657516553 4.120000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G117700 chr1D 113992752 113995860 3108 True 5742.000000 5742 100.000000 1 3109 1 chr1D.!!$R1 3108
1 TraesCS1D01G117700 chr1B 174249219 174253184 3965 True 875.750000 2303 92.829000 1 2825 4 chr1B.!!$R4 2824
2 TraesCS1D01G117700 chr2D 393204665 393206531 1866 False 796.666667 1718 88.892667 805 2866 3 chr2D.!!$F2 2061
3 TraesCS1D01G117700 chr2D 393069398 393071179 1781 False 575.750000 1435 90.614500 805 2761 4 chr2D.!!$F1 1956
4 TraesCS1D01G117700 chr2D 393211363 393216959 5596 False 521.300000 1773 91.808500 712 2887 4 chr2D.!!$F3 2175
5 TraesCS1D01G117700 chr2B 464878512 464881201 2689 False 700.333333 1439 88.753000 986 2866 3 chr2B.!!$F5 1880
6 TraesCS1D01G117700 chr2B 464898102 464901460 3358 False 551.766667 1402 91.391667 986 2869 3 chr2B.!!$F6 1883
7 TraesCS1D01G117700 chr3A 102435908 102436864 956 False 1301.000000 1301 91.219000 920 1880 1 chr3A.!!$F3 960
8 TraesCS1D01G117700 chr3A 102388646 102389588 942 False 1245.000000 1245 90.501000 929 1880 1 chr3A.!!$F1 951
9 TraesCS1D01G117700 chr3A 102441053 102441603 550 False 412.000000 412 81.086000 1941 2484 1 chr3A.!!$F4 543
10 TraesCS1D01G117700 chr3A 102500277 102500827 550 False 412.000000 412 81.086000 1941 2484 1 chr3A.!!$F8 543
11 TraesCS1D01G117700 chr3A 102393595 102394139 544 False 392.000000 392 80.427000 1941 2479 1 chr3A.!!$F2 538
12 TraesCS1D01G117700 chr2A 531151380 531152875 1495 False 605.833333 1282 89.023667 986 2557 3 chr2A.!!$F1 1571
13 TraesCS1D01G117700 chr3B 135711360 135712184 824 False 1188.000000 1188 92.727000 921 1742 1 chr3B.!!$F1 821
14 TraesCS1D01G117700 chr3B 135768776 135769606 830 False 1138.000000 1138 91.576000 921 1742 1 chr3B.!!$F2 821
15 TraesCS1D01G117700 chr3B 602233774 602234281 507 False 446.000000 446 83.858000 246 711 1 chr3B.!!$F4 465
16 TraesCS1D01G117700 chr3D 85838183 85838796 613 False 521.000000 521 82.540000 1941 2550 1 chr3D.!!$F1 609
17 TraesCS1D01G117700 chr1A 8117936 8118473 537 True 205.000000 278 85.189000 241 712 2 chr1A.!!$R1 471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.035176 GGCCACACCATGCAACAATT 59.965 50.0 0.0 0.0 38.86 2.32 F
203 204 0.040157 CGTACAGGTGTCCGACGAAA 60.040 55.0 0.0 0.0 35.59 3.46 F
361 362 0.107214 CGCACCCATATCCACCAGTT 60.107 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 5452 0.179161 CCGTGTCATCTGTCGAGTCC 60.179 60.000 0.0 0.0 0.00 3.85 R
1779 5663 1.476833 GGCCGGTGGATTATGACATGT 60.477 52.381 1.9 0.0 0.00 3.21 R
2329 7257 2.419673 TGCAACCTTACGCATGAATCTG 59.580 45.455 0.0 0.0 31.95 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.142315 CCTCATGGCGTGATTTTCTCATTT 60.142 41.667 10.32 0.00 35.97 2.32
35 36 4.735985 TCATGGCGTGATTTTCTCATTTG 58.264 39.130 5.03 0.00 35.97 2.32
37 38 2.295629 TGGCGTGATTTTCTCATTTGCA 59.704 40.909 0.00 0.00 35.97 4.08
78 79 1.127951 CGTTTGGTCGCACAACTATCC 59.872 52.381 0.00 0.00 0.00 2.59
79 80 1.467342 GTTTGGTCGCACAACTATCCC 59.533 52.381 0.00 0.00 0.00 3.85
80 81 0.035820 TTGGTCGCACAACTATCCCC 60.036 55.000 0.00 0.00 0.00 4.81
81 82 1.195442 TGGTCGCACAACTATCCCCA 61.195 55.000 0.00 0.00 0.00 4.96
82 83 0.035820 GGTCGCACAACTATCCCCAA 60.036 55.000 0.00 0.00 0.00 4.12
83 84 1.612199 GGTCGCACAACTATCCCCAAA 60.612 52.381 0.00 0.00 0.00 3.28
84 85 1.737793 GTCGCACAACTATCCCCAAAG 59.262 52.381 0.00 0.00 0.00 2.77
85 86 1.626321 TCGCACAACTATCCCCAAAGA 59.374 47.619 0.00 0.00 0.00 2.52
86 87 2.009774 CGCACAACTATCCCCAAAGAG 58.990 52.381 0.00 0.00 0.00 2.85
87 88 2.615493 CGCACAACTATCCCCAAAGAGT 60.615 50.000 0.00 0.00 0.00 3.24
88 89 3.010420 GCACAACTATCCCCAAAGAGTC 58.990 50.000 0.00 0.00 0.00 3.36
89 90 3.610911 CACAACTATCCCCAAAGAGTCC 58.389 50.000 0.00 0.00 0.00 3.85
90 91 3.264450 CACAACTATCCCCAAAGAGTCCT 59.736 47.826 0.00 0.00 0.00 3.85
91 92 3.519913 ACAACTATCCCCAAAGAGTCCTC 59.480 47.826 0.00 0.00 0.00 3.71
92 93 2.765502 ACTATCCCCAAAGAGTCCTCC 58.234 52.381 0.00 0.00 0.00 4.30
93 94 2.319438 ACTATCCCCAAAGAGTCCTCCT 59.681 50.000 0.00 0.00 0.00 3.69
94 95 3.536434 ACTATCCCCAAAGAGTCCTCCTA 59.464 47.826 0.00 0.00 0.00 2.94
95 96 3.734344 ATCCCCAAAGAGTCCTCCTAT 57.266 47.619 0.00 0.00 0.00 2.57
96 97 4.852991 ATCCCCAAAGAGTCCTCCTATA 57.147 45.455 0.00 0.00 0.00 1.31
97 98 3.924922 TCCCCAAAGAGTCCTCCTATAC 58.075 50.000 0.00 0.00 0.00 1.47
98 99 2.628657 CCCCAAAGAGTCCTCCTATACG 59.371 54.545 0.00 0.00 0.00 3.06
99 100 2.036089 CCCAAAGAGTCCTCCTATACGC 59.964 54.545 0.00 0.00 0.00 4.42
100 101 2.693591 CCAAAGAGTCCTCCTATACGCA 59.306 50.000 0.00 0.00 0.00 5.24
101 102 3.491104 CCAAAGAGTCCTCCTATACGCAC 60.491 52.174 0.00 0.00 0.00 5.34
102 103 1.595466 AGAGTCCTCCTATACGCACG 58.405 55.000 0.00 0.00 0.00 5.34
103 104 1.140452 AGAGTCCTCCTATACGCACGA 59.860 52.381 0.00 0.00 0.00 4.35
104 105 2.152830 GAGTCCTCCTATACGCACGAT 58.847 52.381 0.00 0.00 0.00 3.73
105 106 2.152830 AGTCCTCCTATACGCACGATC 58.847 52.381 0.00 0.00 0.00 3.69
106 107 1.136029 GTCCTCCTATACGCACGATCG 60.136 57.143 14.88 14.88 0.00 3.69
107 108 1.154197 CCTCCTATACGCACGATCGA 58.846 55.000 24.34 0.00 0.00 3.59
108 109 1.534163 CCTCCTATACGCACGATCGAA 59.466 52.381 24.34 1.67 0.00 3.71
109 110 2.572243 CTCCTATACGCACGATCGAAC 58.428 52.381 24.34 12.02 0.00 3.95
110 111 1.070376 TCCTATACGCACGATCGAACG 60.070 52.381 24.34 24.77 39.31 3.95
111 112 0.695943 CTATACGCACGATCGAACGC 59.304 55.000 24.34 18.97 36.70 4.84
112 113 0.305617 TATACGCACGATCGAACGCT 59.694 50.000 24.34 16.39 36.70 5.07
113 114 0.928908 ATACGCACGATCGAACGCTC 60.929 55.000 24.34 6.08 36.70 5.03
114 115 2.243160 TACGCACGATCGAACGCTCA 62.243 55.000 24.34 10.41 36.70 4.26
115 116 2.224217 CGCACGATCGAACGCTCAT 61.224 57.895 24.34 0.00 36.70 2.90
116 117 0.928451 CGCACGATCGAACGCTCATA 60.928 55.000 24.34 0.00 36.70 2.15
117 118 0.498927 GCACGATCGAACGCTCATAC 59.501 55.000 24.34 0.00 36.70 2.39
118 119 0.764801 CACGATCGAACGCTCATACG 59.235 55.000 24.34 0.00 36.70 3.06
119 120 0.654160 ACGATCGAACGCTCATACGA 59.346 50.000 24.34 0.00 39.01 3.43
120 121 1.263484 ACGATCGAACGCTCATACGAT 59.737 47.619 24.34 0.00 45.77 3.73
121 122 2.286831 ACGATCGAACGCTCATACGATT 60.287 45.455 24.34 0.00 43.72 3.34
122 123 3.059393 ACGATCGAACGCTCATACGATTA 60.059 43.478 24.34 0.00 43.72 1.75
123 124 3.534902 CGATCGAACGCTCATACGATTAG 59.465 47.826 10.26 0.00 43.72 1.73
124 125 4.665897 CGATCGAACGCTCATACGATTAGA 60.666 45.833 10.26 0.00 43.72 2.10
125 126 4.129878 TCGAACGCTCATACGATTAGAG 57.870 45.455 0.00 0.00 36.70 2.43
126 127 3.805971 TCGAACGCTCATACGATTAGAGA 59.194 43.478 0.00 0.00 36.70 3.10
127 128 3.901290 CGAACGCTCATACGATTAGAGAC 59.099 47.826 0.00 0.00 36.70 3.36
128 129 4.552184 CGAACGCTCATACGATTAGAGACA 60.552 45.833 0.00 0.00 36.70 3.41
129 130 4.895224 ACGCTCATACGATTAGAGACAA 57.105 40.909 0.00 0.00 36.70 3.18
130 131 4.599047 ACGCTCATACGATTAGAGACAAC 58.401 43.478 0.00 0.00 36.70 3.32
131 132 3.975670 CGCTCATACGATTAGAGACAACC 59.024 47.826 0.00 0.00 34.06 3.77
132 133 4.299978 GCTCATACGATTAGAGACAACCC 58.700 47.826 0.00 0.00 0.00 4.11
133 134 4.202121 GCTCATACGATTAGAGACAACCCA 60.202 45.833 0.00 0.00 0.00 4.51
134 135 5.681437 GCTCATACGATTAGAGACAACCCAA 60.681 44.000 0.00 0.00 0.00 4.12
135 136 5.902681 TCATACGATTAGAGACAACCCAAG 58.097 41.667 0.00 0.00 0.00 3.61
136 137 5.655090 TCATACGATTAGAGACAACCCAAGA 59.345 40.000 0.00 0.00 0.00 3.02
137 138 6.323996 TCATACGATTAGAGACAACCCAAGAT 59.676 38.462 0.00 0.00 0.00 2.40
138 139 7.504574 TCATACGATTAGAGACAACCCAAGATA 59.495 37.037 0.00 0.00 0.00 1.98
139 140 6.540438 ACGATTAGAGACAACCCAAGATAA 57.460 37.500 0.00 0.00 0.00 1.75
140 141 7.125792 ACGATTAGAGACAACCCAAGATAAT 57.874 36.000 0.00 0.00 0.00 1.28
141 142 7.565680 ACGATTAGAGACAACCCAAGATAATT 58.434 34.615 0.00 0.00 0.00 1.40
142 143 8.047310 ACGATTAGAGACAACCCAAGATAATTT 58.953 33.333 0.00 0.00 0.00 1.82
143 144 9.542462 CGATTAGAGACAACCCAAGATAATTTA 57.458 33.333 0.00 0.00 0.00 1.40
148 149 9.014297 AGAGACAACCCAAGATAATTTAGTTTG 57.986 33.333 0.00 0.00 0.00 2.93
149 150 8.706322 AGACAACCCAAGATAATTTAGTTTGT 57.294 30.769 0.00 0.00 0.00 2.83
150 151 8.576442 AGACAACCCAAGATAATTTAGTTTGTG 58.424 33.333 0.00 0.00 0.00 3.33
151 152 7.666623 ACAACCCAAGATAATTTAGTTTGTGG 58.333 34.615 0.00 0.00 0.00 4.17
153 154 5.186992 ACCCAAGATAATTTAGTTTGTGGGC 59.813 40.000 4.81 0.00 45.93 5.36
154 155 5.395214 CCCAAGATAATTTAGTTTGTGGGCC 60.395 44.000 0.00 0.00 36.99 5.80
155 156 5.186797 CCAAGATAATTTAGTTTGTGGGCCA 59.813 40.000 0.00 0.00 0.00 5.36
156 157 5.914898 AGATAATTTAGTTTGTGGGCCAC 57.085 39.130 29.75 29.75 34.56 5.01
157 158 5.329399 AGATAATTTAGTTTGTGGGCCACA 58.671 37.500 34.67 34.67 43.02 4.17
158 159 3.744238 AATTTAGTTTGTGGGCCACAC 57.256 42.857 37.75 26.73 44.47 3.82
165 166 2.916703 GTGGGCCACACCATGCAA 60.917 61.111 31.26 0.00 44.49 4.08
166 167 2.916703 TGGGCCACACCATGCAAC 60.917 61.111 0.00 0.00 42.05 4.17
167 168 2.916703 GGGCCACACCATGCAACA 60.917 61.111 4.39 0.00 42.05 3.33
168 169 2.506061 GGGCCACACCATGCAACAA 61.506 57.895 4.39 0.00 42.05 2.83
169 170 1.672898 GGCCACACCATGCAACAAT 59.327 52.632 0.00 0.00 38.86 2.71
170 171 0.035176 GGCCACACCATGCAACAATT 59.965 50.000 0.00 0.00 38.86 2.32
171 172 1.542987 GGCCACACCATGCAACAATTT 60.543 47.619 0.00 0.00 38.86 1.82
172 173 2.220313 GCCACACCATGCAACAATTTT 58.780 42.857 0.00 0.00 0.00 1.82
173 174 2.617774 GCCACACCATGCAACAATTTTT 59.382 40.909 0.00 0.00 0.00 1.94
174 175 3.812053 GCCACACCATGCAACAATTTTTA 59.188 39.130 0.00 0.00 0.00 1.52
175 176 4.319405 GCCACACCATGCAACAATTTTTAC 60.319 41.667 0.00 0.00 0.00 2.01
176 177 4.813161 CCACACCATGCAACAATTTTTACA 59.187 37.500 0.00 0.00 0.00 2.41
177 178 5.050227 CCACACCATGCAACAATTTTTACAG 60.050 40.000 0.00 0.00 0.00 2.74
178 179 5.523188 CACACCATGCAACAATTTTTACAGT 59.477 36.000 0.00 0.00 0.00 3.55
179 180 5.752955 ACACCATGCAACAATTTTTACAGTC 59.247 36.000 0.00 0.00 0.00 3.51
180 181 5.984926 CACCATGCAACAATTTTTACAGTCT 59.015 36.000 0.00 0.00 0.00 3.24
181 182 5.984926 ACCATGCAACAATTTTTACAGTCTG 59.015 36.000 0.00 0.00 0.00 3.51
182 183 5.406175 CCATGCAACAATTTTTACAGTCTGG 59.594 40.000 4.53 0.00 0.00 3.86
183 184 5.590530 TGCAACAATTTTTACAGTCTGGT 57.409 34.783 4.53 0.00 0.00 4.00
184 185 5.587289 TGCAACAATTTTTACAGTCTGGTC 58.413 37.500 4.53 0.00 0.00 4.02
185 186 4.675114 GCAACAATTTTTACAGTCTGGTCG 59.325 41.667 4.53 0.00 0.00 4.79
186 187 5.732247 GCAACAATTTTTACAGTCTGGTCGT 60.732 40.000 4.53 0.00 0.00 4.34
187 188 6.512091 GCAACAATTTTTACAGTCTGGTCGTA 60.512 38.462 4.53 0.00 0.00 3.43
188 189 6.535274 ACAATTTTTACAGTCTGGTCGTAC 57.465 37.500 4.53 0.00 0.00 3.67
189 190 6.050432 ACAATTTTTACAGTCTGGTCGTACA 58.950 36.000 4.53 0.00 0.00 2.90
190 191 6.202188 ACAATTTTTACAGTCTGGTCGTACAG 59.798 38.462 4.53 3.27 39.84 2.74
191 192 3.928727 TTTACAGTCTGGTCGTACAGG 57.071 47.619 4.53 0.00 38.98 4.00
192 193 2.574006 TACAGTCTGGTCGTACAGGT 57.426 50.000 4.53 3.19 38.98 4.00
193 194 0.959553 ACAGTCTGGTCGTACAGGTG 59.040 55.000 4.53 8.99 38.98 4.00
194 195 0.959553 CAGTCTGGTCGTACAGGTGT 59.040 55.000 8.75 0.00 38.98 4.16
195 196 1.068472 CAGTCTGGTCGTACAGGTGTC 60.068 57.143 8.75 0.43 38.98 3.67
196 197 0.243095 GTCTGGTCGTACAGGTGTCC 59.757 60.000 8.75 0.00 38.98 4.02
197 198 1.211969 CTGGTCGTACAGGTGTCCG 59.788 63.158 0.00 0.00 34.84 4.79
198 199 1.228215 TGGTCGTACAGGTGTCCGA 60.228 57.895 0.00 0.00 34.05 4.55
199 200 4.855596 GTCGTACAGGTGTCCGAC 57.144 61.111 11.71 11.71 46.73 4.79
200 201 1.154338 GTCGTACAGGTGTCCGACG 60.154 63.158 11.71 5.22 44.80 5.12
201 202 1.301637 TCGTACAGGTGTCCGACGA 60.302 57.895 0.00 3.14 40.00 4.20
202 203 0.884259 TCGTACAGGTGTCCGACGAA 60.884 55.000 0.00 0.00 39.40 3.85
203 204 0.040157 CGTACAGGTGTCCGACGAAA 60.040 55.000 0.00 0.00 35.59 3.46
204 205 1.600164 CGTACAGGTGTCCGACGAAAA 60.600 52.381 0.00 0.00 35.59 2.29
205 206 2.472816 GTACAGGTGTCCGACGAAAAA 58.527 47.619 0.00 0.00 0.00 1.94
206 207 1.578583 ACAGGTGTCCGACGAAAAAG 58.421 50.000 0.00 0.00 0.00 2.27
207 208 1.134610 ACAGGTGTCCGACGAAAAAGT 60.135 47.619 0.00 0.00 0.00 2.66
208 209 2.101249 ACAGGTGTCCGACGAAAAAGTA 59.899 45.455 0.00 0.00 0.00 2.24
209 210 3.243975 ACAGGTGTCCGACGAAAAAGTAT 60.244 43.478 0.00 0.00 0.00 2.12
210 211 3.367025 CAGGTGTCCGACGAAAAAGTATC 59.633 47.826 0.00 0.00 0.00 2.24
211 212 2.343544 GGTGTCCGACGAAAAAGTATCG 59.656 50.000 0.00 0.00 45.47 2.92
222 223 6.210396 CGAAAAAGTATCGTATGCATAGCA 57.790 37.500 6.67 0.00 38.01 3.49
223 224 6.645705 CGAAAAAGTATCGTATGCATAGCAA 58.354 36.000 6.67 0.00 37.54 3.91
224 225 7.290842 CGAAAAAGTATCGTATGCATAGCAAT 58.709 34.615 6.67 3.85 37.54 3.56
225 226 7.798516 CGAAAAAGTATCGTATGCATAGCAATT 59.201 33.333 6.67 0.00 37.54 2.32
226 227 9.450807 GAAAAAGTATCGTATGCATAGCAATTT 57.549 29.630 6.67 2.06 43.62 1.82
227 228 9.450807 AAAAAGTATCGTATGCATAGCAATTTC 57.549 29.630 6.67 0.00 43.62 2.17
228 229 6.395089 AGTATCGTATGCATAGCAATTTCG 57.605 37.500 6.67 5.49 43.62 3.46
229 230 6.156519 AGTATCGTATGCATAGCAATTTCGA 58.843 36.000 6.67 10.93 43.62 3.71
230 231 6.813649 AGTATCGTATGCATAGCAATTTCGAT 59.186 34.615 21.95 21.95 43.62 3.59
231 232 5.515548 TCGTATGCATAGCAATTTCGATC 57.484 39.130 6.67 0.00 43.62 3.69
361 362 0.107214 CGCACCCATATCCACCAGTT 60.107 55.000 0.00 0.00 0.00 3.16
426 427 4.835927 CCTCATACGGCAGTGGAC 57.164 61.111 0.00 0.00 0.00 4.02
428 429 0.249120 CCTCATACGGCAGTGGACAA 59.751 55.000 0.00 0.00 0.00 3.18
437 438 2.034558 CGGCAGTGGACAACTTGAATTT 59.965 45.455 0.00 0.00 36.83 1.82
539 540 4.202151 GGTAAGCATCAATTCCCCATGAAC 60.202 45.833 0.00 0.00 35.31 3.18
540 541 3.393426 AGCATCAATTCCCCATGAACT 57.607 42.857 0.00 0.00 35.31 3.01
541 542 3.294214 AGCATCAATTCCCCATGAACTC 58.706 45.455 0.00 0.00 35.31 3.01
543 544 3.703052 GCATCAATTCCCCATGAACTCTT 59.297 43.478 0.00 0.00 35.31 2.85
544 545 4.889409 GCATCAATTCCCCATGAACTCTTA 59.111 41.667 0.00 0.00 35.31 2.10
546 547 5.512942 TCAATTCCCCATGAACTCTTACA 57.487 39.130 0.00 0.00 35.31 2.41
547 548 6.078456 TCAATTCCCCATGAACTCTTACAT 57.922 37.500 0.00 0.00 35.31 2.29
548 549 5.887598 TCAATTCCCCATGAACTCTTACATG 59.112 40.000 0.00 0.00 42.12 3.21
549 550 4.927267 TTCCCCATGAACTCTTACATGT 57.073 40.909 2.69 2.69 41.26 3.21
550 551 4.927267 TCCCCATGAACTCTTACATGTT 57.073 40.909 2.30 0.00 41.26 2.71
551 552 5.255397 TCCCCATGAACTCTTACATGTTT 57.745 39.130 2.30 0.00 41.26 2.83
552 553 5.009631 TCCCCATGAACTCTTACATGTTTG 58.990 41.667 2.30 0.00 41.26 2.93
553 554 4.766891 CCCCATGAACTCTTACATGTTTGT 59.233 41.667 2.30 0.00 41.26 2.83
554 555 5.335897 CCCCATGAACTCTTACATGTTTGTG 60.336 44.000 2.30 1.04 41.26 3.33
555 556 5.335897 CCCATGAACTCTTACATGTTTGTGG 60.336 44.000 2.30 2.83 41.26 4.17
556 557 4.829064 TGAACTCTTACATGTTTGTGGC 57.171 40.909 2.30 0.00 36.53 5.01
557 558 4.203226 TGAACTCTTACATGTTTGTGGCA 58.797 39.130 2.30 0.00 36.53 4.92
558 559 4.642437 TGAACTCTTACATGTTTGTGGCAA 59.358 37.500 2.30 0.00 36.53 4.52
559 560 5.301551 TGAACTCTTACATGTTTGTGGCAAT 59.698 36.000 2.30 0.00 36.53 3.56
560 561 5.376854 ACTCTTACATGTTTGTGGCAATC 57.623 39.130 2.30 0.00 36.53 2.67
561 562 4.218417 ACTCTTACATGTTTGTGGCAATCC 59.782 41.667 2.30 0.00 36.53 3.01
562 563 4.406456 TCTTACATGTTTGTGGCAATCCT 58.594 39.130 2.30 0.00 36.53 3.24
563 564 4.218200 TCTTACATGTTTGTGGCAATCCTG 59.782 41.667 2.30 0.00 36.53 3.86
564 565 2.230992 TACATGTTTGTGGCAATCCTGC 59.769 45.455 2.30 0.00 41.48 4.85
565 566 5.216262 TACATGTTTGTGGCAATCCTGCG 62.216 47.826 2.30 0.00 42.35 5.18
575 576 3.532892 GCAATCCTGCGTATCAATCTG 57.467 47.619 0.00 0.00 39.20 2.90
576 577 2.225019 GCAATCCTGCGTATCAATCTGG 59.775 50.000 0.00 0.00 39.20 3.86
577 578 2.810274 CAATCCTGCGTATCAATCTGGG 59.190 50.000 0.00 0.00 0.00 4.45
578 579 1.496060 TCCTGCGTATCAATCTGGGT 58.504 50.000 0.00 0.00 0.00 4.51
579 580 1.412710 TCCTGCGTATCAATCTGGGTC 59.587 52.381 0.00 0.00 0.00 4.46
580 581 1.138859 CCTGCGTATCAATCTGGGTCA 59.861 52.381 0.00 0.00 0.00 4.02
581 582 2.477825 CTGCGTATCAATCTGGGTCAG 58.522 52.381 0.00 0.00 0.00 3.51
582 583 1.221414 GCGTATCAATCTGGGTCAGC 58.779 55.000 0.00 0.00 0.00 4.26
583 584 1.473257 GCGTATCAATCTGGGTCAGCA 60.473 52.381 0.00 0.00 0.00 4.41
584 585 2.808202 GCGTATCAATCTGGGTCAGCAT 60.808 50.000 0.00 0.00 0.00 3.79
585 586 3.062763 CGTATCAATCTGGGTCAGCATC 58.937 50.000 0.00 0.00 0.00 3.91
586 587 3.244009 CGTATCAATCTGGGTCAGCATCT 60.244 47.826 0.00 0.00 0.00 2.90
587 588 4.021981 CGTATCAATCTGGGTCAGCATCTA 60.022 45.833 0.00 0.00 0.00 1.98
588 589 5.337089 CGTATCAATCTGGGTCAGCATCTAT 60.337 44.000 0.00 0.00 0.00 1.98
589 590 4.613925 TCAATCTGGGTCAGCATCTATC 57.386 45.455 0.00 0.00 0.00 2.08
590 591 3.006217 TCAATCTGGGTCAGCATCTATCG 59.994 47.826 0.00 0.00 0.00 2.92
591 592 2.364972 TCTGGGTCAGCATCTATCGA 57.635 50.000 0.00 0.00 0.00 3.59
592 593 2.881734 TCTGGGTCAGCATCTATCGAT 58.118 47.619 2.16 2.16 0.00 3.59
593 594 2.822561 TCTGGGTCAGCATCTATCGATC 59.177 50.000 0.00 0.00 0.00 3.69
594 595 1.541588 TGGGTCAGCATCTATCGATCG 59.458 52.381 9.36 9.36 0.00 3.69
595 596 1.135257 GGGTCAGCATCTATCGATCGG 60.135 57.143 16.41 0.00 0.00 4.18
691 692 2.280186 GGGATCGCACCATCGACC 60.280 66.667 4.64 0.00 41.62 4.79
707 708 4.832608 CCCGCGAACCAGGCTACC 62.833 72.222 8.23 0.00 0.00 3.18
709 710 2.186903 CGCGAACCAGGCTACCAT 59.813 61.111 0.00 0.00 0.00 3.55
766 767 2.125552 CTGAAGCATCGGACGGCA 60.126 61.111 0.00 0.00 33.44 5.69
770 771 0.179189 GAAGCATCGGACGGCAAAAG 60.179 55.000 0.00 0.00 0.00 2.27
801 803 1.027792 GCTTTGGCCGGTTCCGATTA 61.028 55.000 13.08 0.00 0.00 1.75
802 804 1.675552 CTTTGGCCGGTTCCGATTAT 58.324 50.000 13.08 0.00 0.00 1.28
815 3170 8.248945 CCGGTTCCGATTATAACATAGTATCTT 58.751 37.037 13.08 0.00 0.00 2.40
922 4682 1.669049 CCCCGTGCACCATACTACGA 61.669 60.000 12.15 0.00 38.72 3.43
936 4696 1.000019 TACGACCCCCTCCAGTCTG 60.000 63.158 0.00 0.00 0.00 3.51
1553 5385 2.125552 CTCGATGGCTGGCACGAA 60.126 61.111 21.63 11.30 34.50 3.85
1704 5536 0.689080 AACAAACACCACCCCATGCA 60.689 50.000 0.00 0.00 0.00 3.96
1706 5538 1.114722 CAAACACCACCCCATGCAGT 61.115 55.000 0.00 0.00 0.00 4.40
1775 5659 4.521256 TCCAGTATTTTTGGTGCCAGTAAC 59.479 41.667 0.00 0.00 37.02 2.50
1779 5663 0.752009 TTTTGGTGCCAGTAACGCCA 60.752 50.000 0.00 0.00 45.70 5.69
2124 7002 2.873472 TGTTAATCACCACACGTGTTCC 59.127 45.455 20.79 0.00 43.51 3.62
2125 7003 1.785768 TAATCACCACACGTGTTCCG 58.214 50.000 20.79 11.94 43.51 4.30
2137 7015 3.595709 CGTGTTCCGTTACATTTGTGT 57.404 42.857 0.00 0.00 0.00 3.72
2138 7016 3.942739 CGTGTTCCGTTACATTTGTGTT 58.057 40.909 0.00 0.00 0.00 3.32
2139 7017 3.963724 CGTGTTCCGTTACATTTGTGTTC 59.036 43.478 0.00 0.00 0.00 3.18
2140 7018 4.284485 GTGTTCCGTTACATTTGTGTTCC 58.716 43.478 0.00 0.00 0.00 3.62
2239 7157 6.971602 TCTTGTATAGTGCGATCTCTTTAGG 58.028 40.000 0.00 0.00 0.00 2.69
2241 7159 4.583073 TGTATAGTGCGATCTCTTTAGGCA 59.417 41.667 0.00 0.00 0.00 4.75
2248 7166 3.525537 CGATCTCTTTAGGCAAGCTTCA 58.474 45.455 0.00 0.00 31.70 3.02
2329 7257 1.953559 TGCGCAATCCATCTTCCTAC 58.046 50.000 8.16 0.00 0.00 3.18
2349 8664 2.420022 ACAGATTCATGCGTAAGGTTGC 59.580 45.455 0.00 0.00 38.28 4.17
2368 8683 8.353423 AGGTTGCATTCTTCTTTGTATTACAT 57.647 30.769 0.00 0.00 0.00 2.29
2426 8743 4.499188 CGCGTCTGGTCCTTATTAGATGAA 60.499 45.833 0.00 0.00 0.00 2.57
2453 8770 2.159128 TCCGTTTGTTAGTCGTTGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
2459 8776 2.358582 TGTTAGTCGTTGGTCAAGACGA 59.641 45.455 0.00 0.00 45.01 4.20
2472 8789 2.552743 TCAAGACGATGACGAGACACTT 59.447 45.455 0.00 0.00 42.66 3.16
2553 8870 1.815003 CTCTTTGATGGAGGTGTTGGC 59.185 52.381 0.00 0.00 0.00 4.52
2556 8873 2.307496 TTGATGGAGGTGTTGGCATT 57.693 45.000 0.00 0.00 0.00 3.56
2561 8878 1.686052 TGGAGGTGTTGGCATTTTGAC 59.314 47.619 0.00 0.00 0.00 3.18
2567 8884 3.389221 GTGTTGGCATTTTGACGGAAAT 58.611 40.909 0.00 0.00 0.00 2.17
2572 8889 3.119531 TGGCATTTTGACGGAAATAGCAG 60.120 43.478 0.00 0.00 31.07 4.24
2589 8906 2.871182 CAGGACTCTGCTGCGTATTA 57.129 50.000 0.00 0.00 33.86 0.98
2595 8912 7.090808 CAGGACTCTGCTGCGTATTATTATTA 58.909 38.462 0.00 0.00 33.86 0.98
2716 9035 5.600898 TGTCGGTATTGGAGGAATCAATAGA 59.399 40.000 0.00 0.00 37.64 1.98
2770 10765 4.809426 GTCCCTAGATGGAATAACACAACG 59.191 45.833 0.00 0.00 35.80 4.10
2781 10777 5.347907 GGAATAACACAACGTACCTTGAGAG 59.652 44.000 10.99 4.08 0.00 3.20
2796 10792 0.030908 GAGAGATACTGAACCGCCCG 59.969 60.000 0.00 0.00 0.00 6.13
2818 10814 4.020543 GAGAATCCTCTACTCACACCACT 58.979 47.826 0.00 0.00 36.50 4.00
2819 10815 5.194432 GAGAATCCTCTACTCACACCACTA 58.806 45.833 0.00 0.00 36.50 2.74
2831 10827 7.676683 ACTCACACCACTACCAATATTAGAT 57.323 36.000 0.00 0.00 0.00 1.98
2832 10828 7.500992 ACTCACACCACTACCAATATTAGATG 58.499 38.462 0.00 0.00 0.00 2.90
2914 10910 6.445357 TTTTTAGACAAACTCGGAAGCTTT 57.555 33.333 0.00 0.00 0.00 3.51
2915 10911 6.445357 TTTTAGACAAACTCGGAAGCTTTT 57.555 33.333 0.00 0.00 0.00 2.27
2916 10912 7.556733 TTTTAGACAAACTCGGAAGCTTTTA 57.443 32.000 0.00 0.00 0.00 1.52
2917 10913 7.739498 TTTAGACAAACTCGGAAGCTTTTAT 57.261 32.000 0.00 0.00 0.00 1.40
2918 10914 7.739498 TTAGACAAACTCGGAAGCTTTTATT 57.261 32.000 0.00 0.00 0.00 1.40
2919 10915 8.836268 TTAGACAAACTCGGAAGCTTTTATTA 57.164 30.769 0.00 0.00 0.00 0.98
2920 10916 7.739498 AGACAAACTCGGAAGCTTTTATTAA 57.261 32.000 0.00 0.00 0.00 1.40
2921 10917 8.161699 AGACAAACTCGGAAGCTTTTATTAAA 57.838 30.769 0.00 0.00 0.00 1.52
2922 10918 8.793592 AGACAAACTCGGAAGCTTTTATTAAAT 58.206 29.630 0.00 0.00 0.00 1.40
2923 10919 8.965986 ACAAACTCGGAAGCTTTTATTAAATC 57.034 30.769 0.00 0.00 0.00 2.17
2924 10920 8.573035 ACAAACTCGGAAGCTTTTATTAAATCA 58.427 29.630 0.00 0.00 0.00 2.57
2925 10921 9.573133 CAAACTCGGAAGCTTTTATTAAATCAT 57.427 29.630 0.00 0.00 0.00 2.45
2926 10922 9.788960 AAACTCGGAAGCTTTTATTAAATCATC 57.211 29.630 0.00 0.00 0.00 2.92
2927 10923 8.506168 ACTCGGAAGCTTTTATTAAATCATCA 57.494 30.769 0.00 0.00 0.00 3.07
2928 10924 8.398665 ACTCGGAAGCTTTTATTAAATCATCAC 58.601 33.333 0.00 0.00 0.00 3.06
2929 10925 8.275015 TCGGAAGCTTTTATTAAATCATCACA 57.725 30.769 0.00 0.00 0.00 3.58
2930 10926 8.735315 TCGGAAGCTTTTATTAAATCATCACAA 58.265 29.630 0.00 0.00 0.00 3.33
2931 10927 8.798153 CGGAAGCTTTTATTAAATCATCACAAC 58.202 33.333 0.00 0.00 0.00 3.32
2932 10928 8.798153 GGAAGCTTTTATTAAATCATCACAACG 58.202 33.333 0.00 0.00 0.00 4.10
2933 10929 9.341899 GAAGCTTTTATTAAATCATCACAACGT 57.658 29.630 0.00 0.00 0.00 3.99
2934 10930 9.691362 AAGCTTTTATTAAATCATCACAACGTT 57.309 25.926 0.00 0.00 0.00 3.99
2935 10931 9.691362 AGCTTTTATTAAATCATCACAACGTTT 57.309 25.926 0.00 0.00 0.00 3.60
2951 10947 3.839823 CGTTTACACGGACGAAAGAAA 57.160 42.857 0.00 0.00 43.16 2.52
2952 10948 3.780054 CGTTTACACGGACGAAAGAAAG 58.220 45.455 0.00 0.00 43.16 2.62
2953 10949 3.243643 CGTTTACACGGACGAAAGAAAGT 59.756 43.478 0.00 0.00 43.16 2.66
2954 10950 4.604697 CGTTTACACGGACGAAAGAAAGTC 60.605 45.833 0.00 0.00 43.16 3.01
2961 10957 2.000447 GACGAAAGAAAGTCCATCCGG 59.000 52.381 0.00 0.00 0.00 5.14
2962 10958 0.727398 CGAAAGAAAGTCCATCCGGC 59.273 55.000 0.00 0.00 0.00 6.13
2963 10959 1.676014 CGAAAGAAAGTCCATCCGGCT 60.676 52.381 0.00 0.00 0.00 5.52
2964 10960 1.740025 GAAAGAAAGTCCATCCGGCTG 59.260 52.381 0.00 0.00 0.00 4.85
2965 10961 0.035056 AAGAAAGTCCATCCGGCTGG 60.035 55.000 18.63 18.63 37.66 4.85
2966 10962 2.044946 AAAGTCCATCCGGCTGGC 60.045 61.111 19.87 14.18 36.16 4.85
2967 10963 3.645268 AAAGTCCATCCGGCTGGCC 62.645 63.158 19.87 8.60 36.16 5.36
2969 10965 3.161450 GTCCATCCGGCTGGCCTA 61.161 66.667 19.87 0.00 36.16 3.93
2970 10966 2.366301 TCCATCCGGCTGGCCTAA 60.366 61.111 19.87 0.00 36.16 2.69
2971 10967 2.203209 CCATCCGGCTGGCCTAAC 60.203 66.667 12.21 0.00 34.14 2.34
2972 10968 2.203209 CATCCGGCTGGCCTAACC 60.203 66.667 6.73 1.09 39.84 2.85
2974 10970 3.043999 ATCCGGCTGGCCTAACCAC 62.044 63.158 6.73 0.00 46.36 4.16
2975 10971 4.028490 CCGGCTGGCCTAACCACA 62.028 66.667 3.32 0.00 46.36 4.17
2976 10972 2.746277 CGGCTGGCCTAACCACAC 60.746 66.667 3.32 0.00 46.36 3.82
2977 10973 2.434331 GGCTGGCCTAACCACACA 59.566 61.111 3.32 0.00 46.36 3.72
2978 10974 1.000896 GGCTGGCCTAACCACACAT 60.001 57.895 3.32 0.00 46.36 3.21
2979 10975 1.315257 GGCTGGCCTAACCACACATG 61.315 60.000 3.32 0.00 46.36 3.21
2980 10976 0.609131 GCTGGCCTAACCACACATGT 60.609 55.000 3.32 0.00 46.36 3.21
2981 10977 1.453155 CTGGCCTAACCACACATGTC 58.547 55.000 3.32 0.00 46.36 3.06
2982 10978 0.321210 TGGCCTAACCACACATGTCG 60.321 55.000 3.32 0.00 46.36 4.35
2983 10979 1.024579 GGCCTAACCACACATGTCGG 61.025 60.000 8.95 8.95 38.86 4.79
2984 10980 1.644786 GCCTAACCACACATGTCGGC 61.645 60.000 10.22 4.09 0.00 5.54
2985 10981 1.024579 CCTAACCACACATGTCGGCC 61.025 60.000 10.22 0.00 0.00 6.13
2986 10982 0.321210 CTAACCACACATGTCGGCCA 60.321 55.000 2.24 0.00 0.00 5.36
2987 10983 0.108774 TAACCACACATGTCGGCCAA 59.891 50.000 2.24 0.00 0.00 4.52
2988 10984 1.452145 AACCACACATGTCGGCCAAC 61.452 55.000 2.24 0.00 0.00 3.77
2989 10985 2.625823 CCACACATGTCGGCCAACC 61.626 63.158 2.24 0.00 0.00 3.77
2999 10995 2.188469 GGCCAACCGGAAGCGATA 59.812 61.111 9.46 0.00 0.00 2.92
3000 10996 1.450669 GGCCAACCGGAAGCGATAA 60.451 57.895 9.46 0.00 0.00 1.75
3001 10997 1.027792 GGCCAACCGGAAGCGATAAA 61.028 55.000 9.46 0.00 0.00 1.40
3002 10998 0.377203 GCCAACCGGAAGCGATAAAG 59.623 55.000 9.46 0.00 0.00 1.85
3003 10999 0.377203 CCAACCGGAAGCGATAAAGC 59.623 55.000 9.46 0.00 37.41 3.51
3004 11000 1.083489 CAACCGGAAGCGATAAAGCA 58.917 50.000 9.46 0.00 40.15 3.91
3005 11001 1.670811 CAACCGGAAGCGATAAAGCAT 59.329 47.619 9.46 0.00 40.15 3.79
3006 11002 1.299541 ACCGGAAGCGATAAAGCATG 58.700 50.000 9.46 0.00 40.15 4.06
3007 11003 0.040958 CCGGAAGCGATAAAGCATGC 60.041 55.000 10.51 10.51 40.15 4.06
3008 11004 0.940126 CGGAAGCGATAAAGCATGCT 59.060 50.000 16.30 16.30 40.15 3.79
3011 11007 2.744787 AAGCGATAAAGCATGCTTCG 57.255 45.000 32.01 29.62 43.77 3.79
3012 11008 0.305922 AGCGATAAAGCATGCTTCGC 59.694 50.000 38.99 38.99 42.86 4.70
3013 11009 0.027979 GCGATAAAGCATGCTTCGCA 59.972 50.000 39.88 26.90 42.43 5.10
3014 11010 1.531677 GCGATAAAGCATGCTTCGCAA 60.532 47.619 39.88 25.17 43.62 4.85
3015 11011 2.369600 CGATAAAGCATGCTTCGCAAG 58.630 47.619 32.01 18.32 43.62 4.01
3016 11012 2.223112 CGATAAAGCATGCTTCGCAAGT 60.223 45.455 32.01 18.17 43.62 3.16
3017 11013 3.728864 CGATAAAGCATGCTTCGCAAGTT 60.729 43.478 32.01 17.45 43.62 2.66
3018 11014 2.514205 AAAGCATGCTTCGCAAGTTT 57.486 40.000 32.01 12.16 43.62 2.66
3019 11015 1.774639 AAGCATGCTTCGCAAGTTTG 58.225 45.000 27.21 0.00 43.62 2.93
3020 11016 0.670162 AGCATGCTTCGCAAGTTTGT 59.330 45.000 16.30 0.00 43.62 2.83
3021 11017 0.780002 GCATGCTTCGCAAGTTTGTG 59.220 50.000 11.37 0.00 43.62 3.33
3022 11018 1.600164 GCATGCTTCGCAAGTTTGTGA 60.600 47.619 11.37 4.11 43.62 3.58
3023 11019 2.313234 CATGCTTCGCAAGTTTGTGAG 58.687 47.619 8.00 4.92 46.93 3.51
3024 11020 0.029300 TGCTTCGCAAGTTTGTGAGC 59.971 50.000 16.09 16.09 46.93 4.26
3025 11021 0.661483 GCTTCGCAAGTTTGTGAGCC 60.661 55.000 8.00 1.30 46.93 4.70
3026 11022 0.947244 CTTCGCAAGTTTGTGAGCCT 59.053 50.000 8.00 0.00 46.93 4.58
3027 11023 0.944386 TTCGCAAGTTTGTGAGCCTC 59.056 50.000 8.00 0.00 46.93 4.70
3028 11024 0.179059 TCGCAAGTTTGTGAGCCTCA 60.179 50.000 4.11 0.00 42.25 3.86
3029 11025 0.662619 CGCAAGTTTGTGAGCCTCAA 59.337 50.000 0.00 0.00 41.01 3.02
3030 11026 1.597937 CGCAAGTTTGTGAGCCTCAAC 60.598 52.381 0.00 0.00 41.01 3.18
3031 11027 1.405105 GCAAGTTTGTGAGCCTCAACA 59.595 47.619 0.00 0.00 0.00 3.33
3032 11028 2.035066 GCAAGTTTGTGAGCCTCAACAT 59.965 45.455 0.00 0.00 0.00 2.71
3033 11029 3.491447 GCAAGTTTGTGAGCCTCAACATT 60.491 43.478 0.00 0.00 0.00 2.71
3034 11030 4.293415 CAAGTTTGTGAGCCTCAACATTC 58.707 43.478 0.00 0.00 0.00 2.67
3035 11031 2.549754 AGTTTGTGAGCCTCAACATTCG 59.450 45.455 0.00 0.00 0.00 3.34
3036 11032 2.542020 TTGTGAGCCTCAACATTCGA 57.458 45.000 0.00 0.00 0.00 3.71
3037 11033 2.084610 TGTGAGCCTCAACATTCGAG 57.915 50.000 0.00 0.00 0.00 4.04
3038 11034 0.723981 GTGAGCCTCAACATTCGAGC 59.276 55.000 0.00 0.00 0.00 5.03
3039 11035 0.610174 TGAGCCTCAACATTCGAGCT 59.390 50.000 0.00 0.00 0.00 4.09
3040 11036 1.285578 GAGCCTCAACATTCGAGCTC 58.714 55.000 2.73 2.73 31.39 4.09
3041 11037 0.107945 AGCCTCAACATTCGAGCTCC 60.108 55.000 8.47 0.00 0.00 4.70
3042 11038 0.107945 GCCTCAACATTCGAGCTCCT 60.108 55.000 8.47 0.00 0.00 3.69
3043 11039 1.137086 GCCTCAACATTCGAGCTCCTA 59.863 52.381 8.47 0.00 0.00 2.94
3044 11040 2.418746 GCCTCAACATTCGAGCTCCTAA 60.419 50.000 8.47 3.18 0.00 2.69
3045 11041 3.861840 CCTCAACATTCGAGCTCCTAAA 58.138 45.455 8.47 0.44 0.00 1.85
3046 11042 4.446371 CCTCAACATTCGAGCTCCTAAAT 58.554 43.478 8.47 3.02 0.00 1.40
3047 11043 4.878397 CCTCAACATTCGAGCTCCTAAATT 59.122 41.667 8.47 0.02 0.00 1.82
3048 11044 5.007136 CCTCAACATTCGAGCTCCTAAATTC 59.993 44.000 8.47 0.00 0.00 2.17
3049 11045 5.487433 TCAACATTCGAGCTCCTAAATTCA 58.513 37.500 8.47 0.00 0.00 2.57
3050 11046 6.115446 TCAACATTCGAGCTCCTAAATTCAT 58.885 36.000 8.47 0.00 0.00 2.57
3051 11047 5.998454 ACATTCGAGCTCCTAAATTCATG 57.002 39.130 8.47 0.87 0.00 3.07
3052 11048 5.674525 ACATTCGAGCTCCTAAATTCATGA 58.325 37.500 8.47 0.00 0.00 3.07
3053 11049 5.525378 ACATTCGAGCTCCTAAATTCATGAC 59.475 40.000 8.47 0.00 0.00 3.06
3054 11050 5.344743 TTCGAGCTCCTAAATTCATGACT 57.655 39.130 8.47 0.00 0.00 3.41
3055 11051 6.465439 TTCGAGCTCCTAAATTCATGACTA 57.535 37.500 8.47 0.00 0.00 2.59
3056 11052 6.465439 TCGAGCTCCTAAATTCATGACTAA 57.535 37.500 8.47 0.00 0.00 2.24
3057 11053 7.055667 TCGAGCTCCTAAATTCATGACTAAT 57.944 36.000 8.47 0.00 0.00 1.73
3058 11054 8.178313 TCGAGCTCCTAAATTCATGACTAATA 57.822 34.615 8.47 0.00 0.00 0.98
3059 11055 8.082852 TCGAGCTCCTAAATTCATGACTAATAC 58.917 37.037 8.47 0.00 0.00 1.89
3060 11056 8.085296 CGAGCTCCTAAATTCATGACTAATACT 58.915 37.037 8.47 0.00 0.00 2.12
3063 11059 9.982651 GCTCCTAAATTCATGACTAATACTACA 57.017 33.333 0.00 0.00 0.00 2.74
3069 11065 8.668510 AATTCATGACTAATACTACAAGCCTG 57.331 34.615 0.00 0.00 0.00 4.85
3070 11066 7.418337 TTCATGACTAATACTACAAGCCTGA 57.582 36.000 0.00 0.00 0.00 3.86
3071 11067 7.418337 TCATGACTAATACTACAAGCCTGAA 57.582 36.000 0.00 0.00 0.00 3.02
3072 11068 7.847096 TCATGACTAATACTACAAGCCTGAAA 58.153 34.615 0.00 0.00 0.00 2.69
3073 11069 8.318412 TCATGACTAATACTACAAGCCTGAAAA 58.682 33.333 0.00 0.00 0.00 2.29
3074 11070 8.607459 CATGACTAATACTACAAGCCTGAAAAG 58.393 37.037 0.00 0.00 0.00 2.27
3075 11071 7.676947 TGACTAATACTACAAGCCTGAAAAGT 58.323 34.615 0.00 0.00 0.00 2.66
3076 11072 8.809066 TGACTAATACTACAAGCCTGAAAAGTA 58.191 33.333 0.00 0.00 0.00 2.24
3077 11073 9.303537 GACTAATACTACAAGCCTGAAAAGTAG 57.696 37.037 0.00 0.00 38.43 2.57
3078 11074 9.032624 ACTAATACTACAAGCCTGAAAAGTAGA 57.967 33.333 0.00 0.00 36.54 2.59
3079 11075 9.303537 CTAATACTACAAGCCTGAAAAGTAGAC 57.696 37.037 0.00 0.00 36.54 2.59
3080 11076 5.546621 ACTACAAGCCTGAAAAGTAGACA 57.453 39.130 0.00 0.00 36.54 3.41
3081 11077 6.115448 ACTACAAGCCTGAAAAGTAGACAT 57.885 37.500 0.00 0.00 36.54 3.06
3082 11078 7.241042 ACTACAAGCCTGAAAAGTAGACATA 57.759 36.000 0.00 0.00 36.54 2.29
3083 11079 7.097834 ACTACAAGCCTGAAAAGTAGACATAC 58.902 38.462 0.00 0.00 36.54 2.39
3084 11080 4.929808 ACAAGCCTGAAAAGTAGACATACG 59.070 41.667 0.00 0.00 36.97 3.06
3085 11081 5.168569 CAAGCCTGAAAAGTAGACATACGA 58.831 41.667 0.00 0.00 36.97 3.43
3086 11082 5.599999 AGCCTGAAAAGTAGACATACGAT 57.400 39.130 0.00 0.00 36.97 3.73
3087 11083 5.593010 AGCCTGAAAAGTAGACATACGATC 58.407 41.667 0.00 0.00 36.97 3.69
3088 11084 5.361285 AGCCTGAAAAGTAGACATACGATCT 59.639 40.000 0.00 0.00 36.97 2.75
3089 11085 6.546403 AGCCTGAAAAGTAGACATACGATCTA 59.454 38.462 0.00 0.00 36.97 1.98
3090 11086 7.068348 AGCCTGAAAAGTAGACATACGATCTAA 59.932 37.037 0.00 0.00 36.97 2.10
3091 11087 7.868415 GCCTGAAAAGTAGACATACGATCTAAT 59.132 37.037 0.00 0.00 36.97 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.176527 AAATCACGCCATGAGGGTTG 58.823 50.000 0.00 0.00 41.91 3.77
34 35 5.392595 GCTTCGTGGGAAAGTAATAATTGCA 60.393 40.000 0.00 0.00 0.00 4.08
35 36 5.034797 GCTTCGTGGGAAAGTAATAATTGC 58.965 41.667 0.00 0.00 0.00 3.56
37 38 4.939439 ACGCTTCGTGGGAAAGTAATAATT 59.061 37.500 0.00 0.00 39.18 1.40
78 79 2.036089 GCGTATAGGAGGACTCTTTGGG 59.964 54.545 0.00 0.00 0.00 4.12
79 80 2.693591 TGCGTATAGGAGGACTCTTTGG 59.306 50.000 0.00 0.00 0.00 3.28
80 81 3.707793 GTGCGTATAGGAGGACTCTTTG 58.292 50.000 0.00 0.00 0.00 2.77
81 82 2.358267 CGTGCGTATAGGAGGACTCTTT 59.642 50.000 0.00 0.00 0.00 2.52
82 83 1.948145 CGTGCGTATAGGAGGACTCTT 59.052 52.381 0.00 0.00 0.00 2.85
83 84 1.140452 TCGTGCGTATAGGAGGACTCT 59.860 52.381 0.00 0.00 30.19 3.24
84 85 1.590932 TCGTGCGTATAGGAGGACTC 58.409 55.000 0.00 0.00 30.19 3.36
85 86 2.152830 GATCGTGCGTATAGGAGGACT 58.847 52.381 0.00 0.00 37.88 3.85
86 87 1.136029 CGATCGTGCGTATAGGAGGAC 60.136 57.143 7.03 0.00 37.88 3.85
87 88 1.154197 CGATCGTGCGTATAGGAGGA 58.846 55.000 7.03 0.00 39.31 3.71
88 89 1.154197 TCGATCGTGCGTATAGGAGG 58.846 55.000 15.94 0.00 0.00 4.30
89 90 2.572243 GTTCGATCGTGCGTATAGGAG 58.428 52.381 15.94 0.00 0.00 3.69
90 91 1.070376 CGTTCGATCGTGCGTATAGGA 60.070 52.381 15.94 0.00 0.00 2.94
91 92 1.315497 CGTTCGATCGTGCGTATAGG 58.685 55.000 15.94 0.00 0.00 2.57
92 93 0.695943 GCGTTCGATCGTGCGTATAG 59.304 55.000 25.15 9.52 0.00 1.31
93 94 0.305617 AGCGTTCGATCGTGCGTATA 59.694 50.000 25.15 1.78 0.00 1.47
94 95 0.928908 GAGCGTTCGATCGTGCGTAT 60.929 55.000 25.15 18.05 0.00 3.06
95 96 1.581912 GAGCGTTCGATCGTGCGTA 60.582 57.895 25.15 3.10 0.00 4.42
96 97 2.867333 ATGAGCGTTCGATCGTGCGT 62.867 55.000 25.15 16.50 0.00 5.24
97 98 0.928451 TATGAGCGTTCGATCGTGCG 60.928 55.000 22.31 22.31 0.00 5.34
98 99 0.498927 GTATGAGCGTTCGATCGTGC 59.501 55.000 15.94 16.93 0.00 5.34
99 100 0.764801 CGTATGAGCGTTCGATCGTG 59.235 55.000 15.94 7.65 0.00 4.35
100 101 0.654160 TCGTATGAGCGTTCGATCGT 59.346 50.000 15.94 9.90 0.00 3.73
101 102 1.951792 ATCGTATGAGCGTTCGATCG 58.048 50.000 9.36 9.36 38.38 3.69
102 103 4.709640 TCTAATCGTATGAGCGTTCGATC 58.290 43.478 3.48 3.48 41.17 3.69
103 104 4.451435 TCTCTAATCGTATGAGCGTTCGAT 59.549 41.667 0.00 0.00 43.30 3.59
104 105 3.805971 TCTCTAATCGTATGAGCGTTCGA 59.194 43.478 0.00 0.00 36.77 3.71
105 106 3.901290 GTCTCTAATCGTATGAGCGTTCG 59.099 47.826 0.00 0.00 0.00 3.95
106 107 4.845387 TGTCTCTAATCGTATGAGCGTTC 58.155 43.478 0.00 0.00 0.00 3.95
107 108 4.895224 TGTCTCTAATCGTATGAGCGTT 57.105 40.909 0.00 0.00 0.00 4.84
108 109 4.497674 GGTTGTCTCTAATCGTATGAGCGT 60.498 45.833 0.00 0.00 0.00 5.07
109 110 3.975670 GGTTGTCTCTAATCGTATGAGCG 59.024 47.826 0.00 0.00 0.00 5.03
110 111 4.202121 TGGGTTGTCTCTAATCGTATGAGC 60.202 45.833 0.00 0.00 0.00 4.26
111 112 5.515797 TGGGTTGTCTCTAATCGTATGAG 57.484 43.478 0.00 0.00 0.00 2.90
112 113 5.655090 TCTTGGGTTGTCTCTAATCGTATGA 59.345 40.000 0.00 0.00 0.00 2.15
113 114 5.902681 TCTTGGGTTGTCTCTAATCGTATG 58.097 41.667 0.00 0.00 0.00 2.39
114 115 6.732896 ATCTTGGGTTGTCTCTAATCGTAT 57.267 37.500 0.00 0.00 0.00 3.06
115 116 7.649533 TTATCTTGGGTTGTCTCTAATCGTA 57.350 36.000 0.00 0.00 0.00 3.43
116 117 6.540438 TTATCTTGGGTTGTCTCTAATCGT 57.460 37.500 0.00 0.00 0.00 3.73
117 118 8.438676 AAATTATCTTGGGTTGTCTCTAATCG 57.561 34.615 0.00 0.00 0.00 3.34
122 123 9.014297 CAAACTAAATTATCTTGGGTTGTCTCT 57.986 33.333 0.00 0.00 31.74 3.10
123 124 8.793592 ACAAACTAAATTATCTTGGGTTGTCTC 58.206 33.333 0.00 0.00 42.10 3.36
124 125 8.576442 CACAAACTAAATTATCTTGGGTTGTCT 58.424 33.333 0.75 0.00 42.10 3.41
125 126 7.812669 CCACAAACTAAATTATCTTGGGTTGTC 59.187 37.037 0.75 0.00 42.10 3.18
126 127 7.256154 CCCACAAACTAAATTATCTTGGGTTGT 60.256 37.037 0.00 0.00 45.36 3.32
127 128 7.096551 CCCACAAACTAAATTATCTTGGGTTG 58.903 38.462 0.00 0.00 39.59 3.77
128 129 6.295632 GCCCACAAACTAAATTATCTTGGGTT 60.296 38.462 4.80 0.00 42.80 4.11
129 130 5.186992 GCCCACAAACTAAATTATCTTGGGT 59.813 40.000 4.80 0.00 42.80 4.51
130 131 5.395214 GGCCCACAAACTAAATTATCTTGGG 60.395 44.000 0.00 0.00 43.56 4.12
131 132 5.186797 TGGCCCACAAACTAAATTATCTTGG 59.813 40.000 0.00 0.00 0.00 3.61
132 133 6.099341 GTGGCCCACAAACTAAATTATCTTG 58.901 40.000 9.55 0.00 34.08 3.02
133 134 5.777732 TGTGGCCCACAAACTAAATTATCTT 59.222 36.000 15.73 0.00 41.69 2.40
134 135 5.185056 GTGTGGCCCACAAACTAAATTATCT 59.815 40.000 20.19 0.00 46.28 1.98
135 136 5.407502 GTGTGGCCCACAAACTAAATTATC 58.592 41.667 20.19 0.00 46.28 1.75
136 137 4.221924 GGTGTGGCCCACAAACTAAATTAT 59.778 41.667 20.19 0.00 46.28 1.28
137 138 3.574826 GGTGTGGCCCACAAACTAAATTA 59.425 43.478 20.19 0.00 46.28 1.40
138 139 2.367241 GGTGTGGCCCACAAACTAAATT 59.633 45.455 20.19 0.00 46.28 1.82
139 140 1.967779 GGTGTGGCCCACAAACTAAAT 59.032 47.619 20.19 0.00 46.28 1.40
140 141 1.342076 TGGTGTGGCCCACAAACTAAA 60.342 47.619 20.19 0.00 46.28 1.85
141 142 0.259065 TGGTGTGGCCCACAAACTAA 59.741 50.000 20.19 0.00 46.28 2.24
142 143 0.480690 ATGGTGTGGCCCACAAACTA 59.519 50.000 20.19 5.48 46.28 2.24
143 144 1.114722 CATGGTGTGGCCCACAAACT 61.115 55.000 20.19 2.57 46.28 2.66
144 145 1.367102 CATGGTGTGGCCCACAAAC 59.633 57.895 20.19 15.20 46.28 2.93
145 146 2.506061 GCATGGTGTGGCCCACAAA 61.506 57.895 20.19 10.73 46.28 2.83
146 147 2.916703 GCATGGTGTGGCCCACAA 60.917 61.111 20.19 4.03 46.28 3.33
147 148 3.745761 TTGCATGGTGTGGCCCACA 62.746 57.895 13.83 13.83 46.44 4.17
148 149 2.916703 TTGCATGGTGTGGCCCAC 60.917 61.111 7.01 7.01 43.74 4.61
149 150 2.916703 GTTGCATGGTGTGGCCCA 60.917 61.111 0.00 0.00 39.27 5.36
150 151 1.829523 ATTGTTGCATGGTGTGGCCC 61.830 55.000 0.00 0.00 36.04 5.80
151 152 0.035176 AATTGTTGCATGGTGTGGCC 59.965 50.000 0.00 0.00 37.90 5.36
152 153 1.881591 AAATTGTTGCATGGTGTGGC 58.118 45.000 0.00 0.00 0.00 5.01
153 154 4.813161 TGTAAAAATTGTTGCATGGTGTGG 59.187 37.500 0.00 0.00 0.00 4.17
154 155 5.523188 ACTGTAAAAATTGTTGCATGGTGTG 59.477 36.000 0.00 0.00 0.00 3.82
155 156 5.669477 ACTGTAAAAATTGTTGCATGGTGT 58.331 33.333 0.00 0.00 0.00 4.16
156 157 5.984926 AGACTGTAAAAATTGTTGCATGGTG 59.015 36.000 0.00 0.00 0.00 4.17
157 158 5.984926 CAGACTGTAAAAATTGTTGCATGGT 59.015 36.000 0.00 0.00 0.00 3.55
158 159 5.406175 CCAGACTGTAAAAATTGTTGCATGG 59.594 40.000 0.00 1.90 0.00 3.66
159 160 5.984926 ACCAGACTGTAAAAATTGTTGCATG 59.015 36.000 0.00 0.00 0.00 4.06
160 161 6.160576 ACCAGACTGTAAAAATTGTTGCAT 57.839 33.333 0.00 0.00 0.00 3.96
161 162 5.587289 GACCAGACTGTAAAAATTGTTGCA 58.413 37.500 0.93 0.00 0.00 4.08
162 163 4.675114 CGACCAGACTGTAAAAATTGTTGC 59.325 41.667 0.93 0.00 0.00 4.17
163 164 5.816919 ACGACCAGACTGTAAAAATTGTTG 58.183 37.500 0.93 0.00 0.00 3.33
164 165 6.539464 TGTACGACCAGACTGTAAAAATTGTT 59.461 34.615 0.93 0.00 0.00 2.83
165 166 6.050432 TGTACGACCAGACTGTAAAAATTGT 58.950 36.000 0.93 0.00 0.00 2.71
166 167 6.347402 CCTGTACGACCAGACTGTAAAAATTG 60.347 42.308 0.93 0.00 34.23 2.32
167 168 5.699458 CCTGTACGACCAGACTGTAAAAATT 59.301 40.000 0.93 0.00 34.23 1.82
168 169 5.221581 ACCTGTACGACCAGACTGTAAAAAT 60.222 40.000 0.93 0.00 34.23 1.82
169 170 4.099881 ACCTGTACGACCAGACTGTAAAAA 59.900 41.667 0.93 0.00 34.23 1.94
170 171 3.638160 ACCTGTACGACCAGACTGTAAAA 59.362 43.478 0.93 0.00 34.23 1.52
171 172 3.005050 CACCTGTACGACCAGACTGTAAA 59.995 47.826 0.93 0.00 34.23 2.01
172 173 2.555325 CACCTGTACGACCAGACTGTAA 59.445 50.000 0.93 0.00 34.23 2.41
173 174 2.156917 CACCTGTACGACCAGACTGTA 58.843 52.381 0.93 0.00 34.23 2.74
174 175 0.959553 CACCTGTACGACCAGACTGT 59.040 55.000 0.93 0.00 34.23 3.55
175 176 0.959553 ACACCTGTACGACCAGACTG 59.040 55.000 7.50 0.00 34.23 3.51
176 177 1.245732 GACACCTGTACGACCAGACT 58.754 55.000 7.50 0.00 34.23 3.24
177 178 0.243095 GGACACCTGTACGACCAGAC 59.757 60.000 7.50 0.00 34.23 3.51
178 179 2.649831 GGACACCTGTACGACCAGA 58.350 57.895 7.50 0.00 34.23 3.86
185 186 2.138596 TTTTCGTCGGACACCTGTAC 57.861 50.000 9.10 0.00 0.00 2.90
186 187 2.101249 ACTTTTTCGTCGGACACCTGTA 59.899 45.455 9.10 0.00 0.00 2.74
187 188 1.134610 ACTTTTTCGTCGGACACCTGT 60.135 47.619 9.10 0.00 0.00 4.00
188 189 1.578583 ACTTTTTCGTCGGACACCTG 58.421 50.000 9.10 0.00 0.00 4.00
189 190 3.582780 GATACTTTTTCGTCGGACACCT 58.417 45.455 9.10 0.00 0.00 4.00
190 191 2.343544 CGATACTTTTTCGTCGGACACC 59.656 50.000 9.10 0.00 32.08 4.16
191 192 2.982470 ACGATACTTTTTCGTCGGACAC 59.018 45.455 9.10 0.00 46.13 3.67
192 193 3.287312 ACGATACTTTTTCGTCGGACA 57.713 42.857 9.10 0.00 46.13 4.02
193 194 4.316930 GCATACGATACTTTTTCGTCGGAC 60.317 45.833 1.59 0.00 46.13 4.79
194 195 3.792956 GCATACGATACTTTTTCGTCGGA 59.207 43.478 1.59 0.00 46.13 4.55
195 196 3.548668 TGCATACGATACTTTTTCGTCGG 59.451 43.478 1.59 0.00 46.13 4.79
196 197 4.748503 TGCATACGATACTTTTTCGTCG 57.251 40.909 1.59 0.00 46.13 5.12
197 198 6.074516 TGCTATGCATACGATACTTTTTCGTC 60.075 38.462 1.16 0.00 40.39 4.20
198 199 5.751509 TGCTATGCATACGATACTTTTTCGT 59.248 36.000 1.16 4.07 42.35 3.85
199 200 6.210396 TGCTATGCATACGATACTTTTTCG 57.790 37.500 1.16 0.00 36.77 3.46
200 201 9.450807 AAATTGCTATGCATACGATACTTTTTC 57.549 29.630 1.16 0.00 38.76 2.29
201 202 9.450807 GAAATTGCTATGCATACGATACTTTTT 57.549 29.630 1.16 0.00 38.76 1.94
202 203 7.798516 CGAAATTGCTATGCATACGATACTTTT 59.201 33.333 1.16 0.00 38.76 2.27
203 204 7.170828 TCGAAATTGCTATGCATACGATACTTT 59.829 33.333 1.16 0.00 38.76 2.66
204 205 6.645003 TCGAAATTGCTATGCATACGATACTT 59.355 34.615 1.16 0.00 38.76 2.24
205 206 6.156519 TCGAAATTGCTATGCATACGATACT 58.843 36.000 1.16 0.00 38.76 2.12
206 207 6.389622 TCGAAATTGCTATGCATACGATAC 57.610 37.500 1.16 3.91 38.76 2.24
207 208 6.255670 GGATCGAAATTGCTATGCATACGATA 59.744 38.462 19.75 0.00 38.76 2.92
208 209 5.063944 GGATCGAAATTGCTATGCATACGAT 59.936 40.000 19.80 19.80 38.76 3.73
209 210 4.388773 GGATCGAAATTGCTATGCATACGA 59.611 41.667 13.51 13.51 38.76 3.43
210 211 4.436050 GGGATCGAAATTGCTATGCATACG 60.436 45.833 1.16 3.32 38.76 3.06
211 212 4.142600 GGGGATCGAAATTGCTATGCATAC 60.143 45.833 1.16 0.99 38.76 2.39
212 213 4.009675 GGGGATCGAAATTGCTATGCATA 58.990 43.478 6.20 6.20 38.76 3.14
213 214 2.821969 GGGGATCGAAATTGCTATGCAT 59.178 45.455 3.79 3.79 38.76 3.96
214 215 2.229792 GGGGATCGAAATTGCTATGCA 58.770 47.619 0.00 0.00 36.47 3.96
215 216 2.229792 TGGGGATCGAAATTGCTATGC 58.770 47.619 0.00 0.00 0.00 3.14
216 217 4.916983 TTTGGGGATCGAAATTGCTATG 57.083 40.909 0.00 0.00 0.00 2.23
217 218 5.388654 AGATTTGGGGATCGAAATTGCTAT 58.611 37.500 0.00 0.00 32.66 2.97
218 219 4.792068 AGATTTGGGGATCGAAATTGCTA 58.208 39.130 0.00 0.00 32.66 3.49
219 220 3.633986 GAGATTTGGGGATCGAAATTGCT 59.366 43.478 0.00 0.00 32.66 3.91
220 221 3.243535 GGAGATTTGGGGATCGAAATTGC 60.244 47.826 0.00 0.00 32.66 3.56
221 222 4.210331 AGGAGATTTGGGGATCGAAATTG 58.790 43.478 0.00 0.00 32.66 2.32
222 223 4.166919 AGAGGAGATTTGGGGATCGAAATT 59.833 41.667 0.00 0.00 32.66 1.82
223 224 3.718956 AGAGGAGATTTGGGGATCGAAAT 59.281 43.478 0.00 0.00 34.69 2.17
224 225 3.115390 AGAGGAGATTTGGGGATCGAAA 58.885 45.455 0.00 0.00 0.00 3.46
225 226 2.764269 AGAGGAGATTTGGGGATCGAA 58.236 47.619 0.00 0.00 0.00 3.71
226 227 2.478872 AGAGGAGATTTGGGGATCGA 57.521 50.000 0.00 0.00 0.00 3.59
227 228 3.567478 AAAGAGGAGATTTGGGGATCG 57.433 47.619 0.00 0.00 0.00 3.69
228 229 5.241662 CGATAAAGAGGAGATTTGGGGATC 58.758 45.833 0.00 0.00 0.00 3.36
229 230 4.042187 CCGATAAAGAGGAGATTTGGGGAT 59.958 45.833 0.00 0.00 0.00 3.85
230 231 3.391296 CCGATAAAGAGGAGATTTGGGGA 59.609 47.826 0.00 0.00 0.00 4.81
231 232 3.136626 ACCGATAAAGAGGAGATTTGGGG 59.863 47.826 0.00 0.00 0.00 4.96
361 362 2.672651 TTGGTACGACCTCGCCGA 60.673 61.111 0.00 0.00 44.43 5.54
392 393 4.467084 GCATCTCCCGTCCCGCAA 62.467 66.667 0.00 0.00 0.00 4.85
426 427 1.701704 GCCTGCCGAAATTCAAGTTG 58.298 50.000 0.00 0.00 0.00 3.16
428 429 0.605319 TCGCCTGCCGAAATTCAAGT 60.605 50.000 0.00 0.00 44.21 3.16
487 488 7.044706 GCAATCGCAATACAAAATACTGAACTC 60.045 37.037 0.00 0.00 38.36 3.01
539 540 4.460382 AGGATTGCCACAAACATGTAAGAG 59.540 41.667 0.00 0.00 36.29 2.85
540 541 4.218200 CAGGATTGCCACAAACATGTAAGA 59.782 41.667 0.00 0.00 36.29 2.10
541 542 4.487948 CAGGATTGCCACAAACATGTAAG 58.512 43.478 0.00 0.00 36.29 2.34
543 544 2.230992 GCAGGATTGCCACAAACATGTA 59.769 45.455 0.00 0.00 44.74 2.29
544 545 1.001181 GCAGGATTGCCACAAACATGT 59.999 47.619 0.00 0.00 44.74 3.21
556 557 2.810274 CCCAGATTGATACGCAGGATTG 59.190 50.000 0.00 0.00 0.00 2.67
557 558 2.439507 ACCCAGATTGATACGCAGGATT 59.560 45.455 0.00 0.00 0.00 3.01
558 559 2.037772 GACCCAGATTGATACGCAGGAT 59.962 50.000 0.00 0.00 0.00 3.24
559 560 1.412710 GACCCAGATTGATACGCAGGA 59.587 52.381 0.00 0.00 0.00 3.86
560 561 1.138859 TGACCCAGATTGATACGCAGG 59.861 52.381 0.00 0.00 0.00 4.85
561 562 2.477825 CTGACCCAGATTGATACGCAG 58.522 52.381 0.00 0.00 32.44 5.18
562 563 1.473257 GCTGACCCAGATTGATACGCA 60.473 52.381 0.00 0.00 32.44 5.24
563 564 1.221414 GCTGACCCAGATTGATACGC 58.779 55.000 0.00 0.00 32.44 4.42
564 565 2.602257 TGCTGACCCAGATTGATACG 57.398 50.000 0.00 0.00 32.44 3.06
565 566 4.348863 AGATGCTGACCCAGATTGATAC 57.651 45.455 0.00 0.00 32.44 2.24
566 567 5.105595 CGATAGATGCTGACCCAGATTGATA 60.106 44.000 0.00 0.00 39.76 2.15
567 568 4.322574 CGATAGATGCTGACCCAGATTGAT 60.323 45.833 0.00 0.00 39.76 2.57
568 569 3.006217 CGATAGATGCTGACCCAGATTGA 59.994 47.826 0.00 0.00 39.76 2.57
569 570 3.006217 TCGATAGATGCTGACCCAGATTG 59.994 47.826 0.00 0.00 42.67 2.67
570 571 3.234353 TCGATAGATGCTGACCCAGATT 58.766 45.455 0.00 0.00 42.67 2.40
571 572 2.881734 TCGATAGATGCTGACCCAGAT 58.118 47.619 0.00 0.00 42.67 2.90
572 573 2.364972 TCGATAGATGCTGACCCAGA 57.635 50.000 0.00 0.00 42.67 3.86
584 585 0.107268 TCACGACCCCGATCGATAGA 59.893 55.000 18.66 1.59 45.13 1.98
585 586 1.130749 GATCACGACCCCGATCGATAG 59.869 57.143 18.66 7.07 45.13 2.08
586 587 1.162698 GATCACGACCCCGATCGATA 58.837 55.000 18.66 0.00 45.13 2.92
587 588 1.524863 GGATCACGACCCCGATCGAT 61.525 60.000 18.66 0.00 45.13 3.59
588 589 2.191513 GGATCACGACCCCGATCGA 61.192 63.158 18.66 0.00 45.13 3.59
637 638 3.861797 CCCAATCGAGGGTCGGGG 61.862 72.222 1.45 0.00 44.24 5.73
677 678 4.891727 GCGGGTCGATGGTGCGAT 62.892 66.667 0.00 0.00 42.82 4.58
691 692 3.385749 ATGGTAGCCTGGTTCGCGG 62.386 63.158 6.13 0.00 0.00 6.46
707 708 2.993471 GCCAGCGTTTCCACCCATG 61.993 63.158 0.00 0.00 0.00 3.66
709 710 4.196778 TGCCAGCGTTTCCACCCA 62.197 61.111 0.00 0.00 0.00 4.51
720 721 1.154150 GAGCAAATCGTGTGCCAGC 60.154 57.895 4.51 0.00 43.27 4.85
801 803 8.638873 TCATGACCGAACAAGATACTATGTTAT 58.361 33.333 0.00 0.00 39.73 1.89
802 804 8.002984 TCATGACCGAACAAGATACTATGTTA 57.997 34.615 0.00 0.00 39.73 2.41
846 3201 1.303317 GAGCTTTGCCCCCTTCGAA 60.303 57.895 0.00 0.00 0.00 3.71
922 4682 3.933542 GAGGCAGACTGGAGGGGGT 62.934 68.421 4.26 0.00 0.00 4.95
970 4730 2.409651 GCGTCGCCGATCTTCTCT 59.590 61.111 5.75 0.00 35.63 3.10
1374 5189 2.975799 GCTGGTTTTCGGACGGCA 60.976 61.111 0.00 0.00 0.00 5.69
1511 5343 2.024868 CACAACGGATTCGGCGACA 61.025 57.895 10.16 0.97 41.39 4.35
1610 5442 4.394078 TCGAGTCCGCCGTCAACG 62.394 66.667 0.00 0.00 35.37 4.10
1620 5452 0.179161 CCGTGTCATCTGTCGAGTCC 60.179 60.000 0.00 0.00 0.00 3.85
1689 5521 1.531365 CACTGCATGGGGTGGTGTT 60.531 57.895 0.00 0.00 0.00 3.32
1721 5553 3.014304 ACACCGGATTACTCTGCTCTA 57.986 47.619 9.46 0.00 0.00 2.43
1775 5659 1.603802 GGTGGATTATGACATGTGGCG 59.396 52.381 1.15 0.00 0.00 5.69
1779 5663 1.476833 GGCCGGTGGATTATGACATGT 60.477 52.381 1.90 0.00 0.00 3.21
1810 5694 3.109044 TGAATTGAACACGGGTACGAA 57.891 42.857 0.00 0.00 44.60 3.85
2124 7002 5.080642 TGTAACGGAACACAAATGTAACG 57.919 39.130 0.00 0.00 38.45 3.18
2125 7003 7.432838 ACAAATGTAACGGAACACAAATGTAAC 59.567 33.333 0.00 0.00 38.45 2.50
2126 7004 7.481642 ACAAATGTAACGGAACACAAATGTAA 58.518 30.769 0.00 0.00 38.45 2.41
2127 7005 7.028926 ACAAATGTAACGGAACACAAATGTA 57.971 32.000 0.00 0.00 38.45 2.29
2128 7006 5.897050 ACAAATGTAACGGAACACAAATGT 58.103 33.333 0.00 0.00 42.46 2.71
2129 7007 7.916128 TTACAAATGTAACGGAACACAAATG 57.084 32.000 1.96 0.00 35.75 2.32
2130 7008 8.192110 AGTTTACAAATGTAACGGAACACAAAT 58.808 29.630 5.53 0.00 39.92 2.32
2131 7009 7.536855 AGTTTACAAATGTAACGGAACACAAA 58.463 30.769 5.53 0.00 39.92 2.83
2132 7010 7.086230 AGTTTACAAATGTAACGGAACACAA 57.914 32.000 5.53 0.00 39.92 3.33
2133 7011 6.680874 AGTTTACAAATGTAACGGAACACA 57.319 33.333 5.53 0.00 39.92 3.72
2134 7012 9.667989 AATAAGTTTACAAATGTAACGGAACAC 57.332 29.630 5.53 1.41 39.92 3.32
2239 7157 5.928264 ACAAAATATTGGAAGTGAAGCTTGC 59.072 36.000 2.10 0.00 44.52 4.01
2241 7159 7.054491 ACACAAAATATTGGAAGTGAAGCTT 57.946 32.000 0.00 0.00 41.01 3.74
2329 7257 2.419673 TGCAACCTTACGCATGAATCTG 59.580 45.455 0.00 0.00 31.95 2.90
2355 8670 9.639601 CGGAGAGCATATTATGTAATACAAAGA 57.360 33.333 0.00 0.00 31.57 2.52
2426 8743 1.494824 GACTAACAAACGGACTGCGT 58.505 50.000 0.00 0.00 0.00 5.24
2453 8770 4.156190 ACATAAGTGTCTCGTCATCGTCTT 59.844 41.667 0.00 0.00 34.25 3.01
2472 8789 5.106475 GCAAAACATTAAGACGTGGGACATA 60.106 40.000 0.00 0.00 44.52 2.29
2553 8870 4.396166 AGTCCTGCTATTTCCGTCAAAATG 59.604 41.667 0.00 0.00 31.50 2.32
2556 8873 3.260884 AGAGTCCTGCTATTTCCGTCAAA 59.739 43.478 0.00 0.00 0.00 2.69
2572 8889 7.884816 TTAATAATAATACGCAGCAGAGTCC 57.115 36.000 0.00 0.00 0.00 3.85
2670 8987 8.573885 CGACACCTCCTAGTATTCATGTTATTA 58.426 37.037 0.00 0.00 0.00 0.98
2673 8990 5.301045 CCGACACCTCCTAGTATTCATGTTA 59.699 44.000 0.00 0.00 0.00 2.41
2684 9001 2.623889 CTCCAATACCGACACCTCCTAG 59.376 54.545 0.00 0.00 0.00 3.02
2730 9049 1.826720 GGACACCACGGTACCATAGAA 59.173 52.381 13.54 0.00 0.00 2.10
2731 9050 1.477553 GGACACCACGGTACCATAGA 58.522 55.000 13.54 0.00 0.00 1.98
2770 10765 4.734108 GCGGTTCAGTATCTCTCAAGGTAC 60.734 50.000 0.00 0.00 39.09 3.34
2781 10777 0.458669 TTCTCGGGCGGTTCAGTATC 59.541 55.000 0.00 0.00 0.00 2.24
2796 10792 4.020543 AGTGGTGTGAGTAGAGGATTCTC 58.979 47.826 0.00 0.00 40.25 2.87
2831 10827 9.889128 TCATTGAAATCACATATCTTCTGTACA 57.111 29.630 0.00 0.00 0.00 2.90
2891 10887 6.445357 AAAGCTTCCGAGTTTGTCTAAAAA 57.555 33.333 0.00 0.00 0.00 1.94
2892 10888 6.445357 AAAAGCTTCCGAGTTTGTCTAAAA 57.555 33.333 0.00 0.00 0.00 1.52
2893 10889 7.739498 ATAAAAGCTTCCGAGTTTGTCTAAA 57.261 32.000 0.00 0.00 0.00 1.85
2894 10890 7.739498 AATAAAAGCTTCCGAGTTTGTCTAA 57.261 32.000 0.00 0.00 0.00 2.10
2895 10891 8.836268 TTAATAAAAGCTTCCGAGTTTGTCTA 57.164 30.769 0.00 0.00 0.00 2.59
2896 10892 7.739498 TTAATAAAAGCTTCCGAGTTTGTCT 57.261 32.000 0.00 0.00 0.00 3.41
2897 10893 8.965986 ATTTAATAAAAGCTTCCGAGTTTGTC 57.034 30.769 0.00 0.00 0.00 3.18
2898 10894 8.573035 TGATTTAATAAAAGCTTCCGAGTTTGT 58.427 29.630 0.00 0.00 32.16 2.83
2899 10895 8.964420 TGATTTAATAAAAGCTTCCGAGTTTG 57.036 30.769 0.00 0.00 32.16 2.93
2900 10896 9.788960 GATGATTTAATAAAAGCTTCCGAGTTT 57.211 29.630 0.00 0.00 32.12 2.66
2901 10897 8.956426 TGATGATTTAATAAAAGCTTCCGAGTT 58.044 29.630 0.00 0.00 35.44 3.01
2902 10898 8.398665 GTGATGATTTAATAAAAGCTTCCGAGT 58.601 33.333 0.00 0.00 35.44 4.18
2903 10899 8.397906 TGTGATGATTTAATAAAAGCTTCCGAG 58.602 33.333 0.00 0.00 35.44 4.63
2904 10900 8.275015 TGTGATGATTTAATAAAAGCTTCCGA 57.725 30.769 0.00 0.00 35.44 4.55
2905 10901 8.798153 GTTGTGATGATTTAATAAAAGCTTCCG 58.202 33.333 0.00 0.00 35.44 4.30
2906 10902 8.798153 CGTTGTGATGATTTAATAAAAGCTTCC 58.202 33.333 0.00 0.00 35.44 3.46
2907 10903 9.341899 ACGTTGTGATGATTTAATAAAAGCTTC 57.658 29.630 0.00 0.00 36.33 3.86
2908 10904 9.691362 AACGTTGTGATGATTTAATAAAAGCTT 57.309 25.926 0.00 0.00 32.16 3.74
2909 10905 9.691362 AAACGTTGTGATGATTTAATAAAAGCT 57.309 25.926 0.00 0.00 32.16 3.74
2914 10910 9.531412 CGTGTAAACGTTGTGATGATTTAATAA 57.469 29.630 0.00 0.00 0.00 1.40
2915 10911 8.169910 CCGTGTAAACGTTGTGATGATTTAATA 58.830 33.333 0.00 0.00 0.00 0.98
2916 10912 7.018826 CCGTGTAAACGTTGTGATGATTTAAT 58.981 34.615 0.00 0.00 0.00 1.40
2917 10913 6.202379 TCCGTGTAAACGTTGTGATGATTTAA 59.798 34.615 0.00 0.00 0.00 1.52
2918 10914 5.695363 TCCGTGTAAACGTTGTGATGATTTA 59.305 36.000 0.00 0.00 0.00 1.40
2919 10915 4.512198 TCCGTGTAAACGTTGTGATGATTT 59.488 37.500 0.00 0.00 0.00 2.17
2920 10916 4.059511 TCCGTGTAAACGTTGTGATGATT 58.940 39.130 0.00 0.00 0.00 2.57
2921 10917 3.430895 GTCCGTGTAAACGTTGTGATGAT 59.569 43.478 0.00 0.00 0.00 2.45
2922 10918 2.796031 GTCCGTGTAAACGTTGTGATGA 59.204 45.455 0.00 0.00 0.00 2.92
2923 10919 2.409244 CGTCCGTGTAAACGTTGTGATG 60.409 50.000 0.00 0.00 34.30 3.07
2924 10920 1.788308 CGTCCGTGTAAACGTTGTGAT 59.212 47.619 0.00 0.00 34.30 3.06
2925 10921 1.198767 CGTCCGTGTAAACGTTGTGA 58.801 50.000 0.00 0.00 34.30 3.58
2926 10922 1.198767 TCGTCCGTGTAAACGTTGTG 58.801 50.000 0.00 0.00 39.78 3.33
2927 10923 1.919918 TTCGTCCGTGTAAACGTTGT 58.080 45.000 0.00 0.00 39.78 3.32
2928 10924 2.535166 TCTTTCGTCCGTGTAAACGTTG 59.465 45.455 0.00 0.00 39.78 4.10
2929 10925 2.808244 TCTTTCGTCCGTGTAAACGTT 58.192 42.857 4.44 0.00 39.78 3.99
2930 10926 2.490328 TCTTTCGTCCGTGTAAACGT 57.510 45.000 4.44 0.00 39.78 3.99
2931 10927 3.243643 ACTTTCTTTCGTCCGTGTAAACG 59.756 43.478 0.00 0.00 40.17 3.60
2932 10928 4.318333 GGACTTTCTTTCGTCCGTGTAAAC 60.318 45.833 0.00 0.00 40.18 2.01
2933 10929 3.803778 GGACTTTCTTTCGTCCGTGTAAA 59.196 43.478 0.00 0.00 40.18 2.01
2934 10930 3.383761 GGACTTTCTTTCGTCCGTGTAA 58.616 45.455 0.00 0.00 40.18 2.41
2935 10931 3.017265 GGACTTTCTTTCGTCCGTGTA 57.983 47.619 0.00 0.00 40.18 2.90
2936 10932 1.861971 GGACTTTCTTTCGTCCGTGT 58.138 50.000 0.00 0.00 40.18 4.49
2941 10937 2.000447 CCGGATGGACTTTCTTTCGTC 59.000 52.381 0.00 0.00 37.49 4.20
2942 10938 1.944430 GCCGGATGGACTTTCTTTCGT 60.944 52.381 5.05 0.00 37.49 3.85
2943 10939 0.727398 GCCGGATGGACTTTCTTTCG 59.273 55.000 5.05 0.00 37.49 3.46
2944 10940 1.740025 CAGCCGGATGGACTTTCTTTC 59.260 52.381 13.14 0.00 37.49 2.62
2945 10941 1.614317 CCAGCCGGATGGACTTTCTTT 60.614 52.381 35.54 0.00 43.57 2.52
2946 10942 0.035056 CCAGCCGGATGGACTTTCTT 60.035 55.000 35.54 0.00 43.57 2.52
2947 10943 1.604378 CCAGCCGGATGGACTTTCT 59.396 57.895 35.54 0.00 43.57 2.52
2948 10944 2.115291 GCCAGCCGGATGGACTTTC 61.115 63.158 41.96 20.25 43.57 2.62
2949 10945 2.044946 GCCAGCCGGATGGACTTT 60.045 61.111 41.96 0.00 43.57 2.66
2950 10946 4.115199 GGCCAGCCGGATGGACTT 62.115 66.667 41.96 0.00 45.80 3.01
2953 10949 2.366301 TTAGGCCAGCCGGATGGA 60.366 61.111 41.96 19.52 43.57 3.41
2954 10950 2.203209 GTTAGGCCAGCCGGATGG 60.203 66.667 34.54 34.54 43.72 3.51
2955 10951 2.203209 GGTTAGGCCAGCCGGATG 60.203 66.667 14.18 14.18 41.95 3.51
2956 10952 2.690881 TGGTTAGGCCAGCCGGAT 60.691 61.111 5.05 0.00 43.61 4.18
2963 10959 0.321210 CGACATGTGTGGTTAGGCCA 60.321 55.000 1.15 0.00 46.95 5.36
2964 10960 1.024579 CCGACATGTGTGGTTAGGCC 61.025 60.000 1.15 0.00 37.90 5.19
2965 10961 1.644786 GCCGACATGTGTGGTTAGGC 61.645 60.000 1.15 2.84 36.01 3.93
2966 10962 1.024579 GGCCGACATGTGTGGTTAGG 61.025 60.000 1.15 0.00 0.00 2.69
2967 10963 0.321210 TGGCCGACATGTGTGGTTAG 60.321 55.000 1.15 0.00 0.00 2.34
2968 10964 0.108774 TTGGCCGACATGTGTGGTTA 59.891 50.000 1.15 0.00 0.00 2.85
2969 10965 1.152860 TTGGCCGACATGTGTGGTT 60.153 52.632 1.15 0.00 0.00 3.67
2970 10966 1.896660 GTTGGCCGACATGTGTGGT 60.897 57.895 18.96 0.00 0.00 4.16
2971 10967 2.625823 GGTTGGCCGACATGTGTGG 61.626 63.158 24.82 6.17 0.00 4.17
2972 10968 2.953821 GGTTGGCCGACATGTGTG 59.046 61.111 24.82 0.00 0.00 3.82
2982 10978 1.027792 TTTATCGCTTCCGGTTGGCC 61.028 55.000 0.00 0.00 34.14 5.36
2983 10979 0.377203 CTTTATCGCTTCCGGTTGGC 59.623 55.000 0.00 3.54 34.14 4.52
2984 10980 0.377203 GCTTTATCGCTTCCGGTTGG 59.623 55.000 0.00 0.00 34.56 3.77
2985 10981 1.083489 TGCTTTATCGCTTCCGGTTG 58.917 50.000 0.00 0.00 34.56 3.77
2986 10982 1.670811 CATGCTTTATCGCTTCCGGTT 59.329 47.619 0.00 0.00 34.56 4.44
2987 10983 1.299541 CATGCTTTATCGCTTCCGGT 58.700 50.000 0.00 0.00 34.56 5.28
2988 10984 0.040958 GCATGCTTTATCGCTTCCGG 60.041 55.000 11.37 0.00 34.56 5.14
2989 10985 0.940126 AGCATGCTTTATCGCTTCCG 59.060 50.000 16.30 0.00 0.00 4.30
2992 10988 2.744787 CGAAGCATGCTTTATCGCTT 57.255 45.000 32.36 9.33 46.90 4.68
3007 11003 0.947244 AGGCTCACAAACTTGCGAAG 59.053 50.000 0.00 0.00 0.00 3.79
3008 11004 0.944386 GAGGCTCACAAACTTGCGAA 59.056 50.000 10.25 0.00 0.00 4.70
3009 11005 0.179059 TGAGGCTCACAAACTTGCGA 60.179 50.000 14.43 0.00 0.00 5.10
3010 11006 0.662619 TTGAGGCTCACAAACTTGCG 59.337 50.000 18.55 0.00 0.00 4.85
3011 11007 1.405105 TGTTGAGGCTCACAAACTTGC 59.595 47.619 18.55 1.17 0.00 4.01
3012 11008 3.996150 ATGTTGAGGCTCACAAACTTG 57.004 42.857 18.55 0.00 0.00 3.16
3013 11009 3.003689 CGAATGTTGAGGCTCACAAACTT 59.996 43.478 18.55 8.47 0.00 2.66
3014 11010 2.549754 CGAATGTTGAGGCTCACAAACT 59.450 45.455 18.55 7.80 0.00 2.66
3015 11011 2.548057 TCGAATGTTGAGGCTCACAAAC 59.452 45.455 18.55 13.71 0.00 2.93
3016 11012 2.807967 CTCGAATGTTGAGGCTCACAAA 59.192 45.455 18.55 6.04 0.00 2.83
3017 11013 2.416747 CTCGAATGTTGAGGCTCACAA 58.583 47.619 18.55 8.84 0.00 3.33
3018 11014 1.941209 GCTCGAATGTTGAGGCTCACA 60.941 52.381 18.55 18.08 33.99 3.58
3019 11015 0.723981 GCTCGAATGTTGAGGCTCAC 59.276 55.000 18.55 12.93 33.99 3.51
3020 11016 0.610174 AGCTCGAATGTTGAGGCTCA 59.390 50.000 14.43 14.43 33.99 4.26
3021 11017 1.285578 GAGCTCGAATGTTGAGGCTC 58.714 55.000 7.79 7.79 33.99 4.70
3022 11018 0.107945 GGAGCTCGAATGTTGAGGCT 60.108 55.000 7.83 0.00 33.99 4.58
3023 11019 0.107945 AGGAGCTCGAATGTTGAGGC 60.108 55.000 7.83 0.00 33.99 4.70
3024 11020 3.526931 TTAGGAGCTCGAATGTTGAGG 57.473 47.619 7.83 0.00 33.99 3.86
3025 11021 5.582269 TGAATTTAGGAGCTCGAATGTTGAG 59.418 40.000 7.83 0.00 36.53 3.02
3026 11022 5.487433 TGAATTTAGGAGCTCGAATGTTGA 58.513 37.500 7.83 0.00 0.00 3.18
3027 11023 5.801350 TGAATTTAGGAGCTCGAATGTTG 57.199 39.130 7.83 0.00 0.00 3.33
3028 11024 6.037610 GTCATGAATTTAGGAGCTCGAATGTT 59.962 38.462 7.83 0.00 0.00 2.71
3029 11025 5.525378 GTCATGAATTTAGGAGCTCGAATGT 59.475 40.000 7.83 0.00 0.00 2.71
3030 11026 5.757320 AGTCATGAATTTAGGAGCTCGAATG 59.243 40.000 7.83 2.96 0.00 2.67
3031 11027 5.923204 AGTCATGAATTTAGGAGCTCGAAT 58.077 37.500 7.83 5.28 0.00 3.34
3032 11028 5.344743 AGTCATGAATTTAGGAGCTCGAA 57.655 39.130 7.83 1.24 0.00 3.71
3033 11029 6.465439 TTAGTCATGAATTTAGGAGCTCGA 57.535 37.500 7.83 0.00 0.00 4.04
3034 11030 8.085296 AGTATTAGTCATGAATTTAGGAGCTCG 58.915 37.037 7.83 0.00 0.00 5.03
3037 11033 9.982651 TGTAGTATTAGTCATGAATTTAGGAGC 57.017 33.333 0.00 0.00 0.00 4.70
3043 11039 9.113838 CAGGCTTGTAGTATTAGTCATGAATTT 57.886 33.333 0.00 0.00 0.00 1.82
3044 11040 8.486210 TCAGGCTTGTAGTATTAGTCATGAATT 58.514 33.333 0.00 0.00 0.00 2.17
3045 11041 8.023021 TCAGGCTTGTAGTATTAGTCATGAAT 57.977 34.615 0.00 0.00 0.00 2.57
3046 11042 7.418337 TCAGGCTTGTAGTATTAGTCATGAA 57.582 36.000 0.00 0.00 0.00 2.57
3047 11043 7.418337 TTCAGGCTTGTAGTATTAGTCATGA 57.582 36.000 0.00 0.00 0.00 3.07
3048 11044 8.492673 TTTTCAGGCTTGTAGTATTAGTCATG 57.507 34.615 0.00 0.00 0.00 3.07
3049 11045 8.322091 ACTTTTCAGGCTTGTAGTATTAGTCAT 58.678 33.333 0.00 0.00 0.00 3.06
3050 11046 7.676947 ACTTTTCAGGCTTGTAGTATTAGTCA 58.323 34.615 0.00 0.00 0.00 3.41
3051 11047 9.303537 CTACTTTTCAGGCTTGTAGTATTAGTC 57.696 37.037 0.00 0.00 0.00 2.59
3052 11048 9.032624 TCTACTTTTCAGGCTTGTAGTATTAGT 57.967 33.333 0.00 0.00 34.13 2.24
3053 11049 9.303537 GTCTACTTTTCAGGCTTGTAGTATTAG 57.696 37.037 0.00 0.00 34.13 1.73
3054 11050 8.809066 TGTCTACTTTTCAGGCTTGTAGTATTA 58.191 33.333 0.00 0.00 34.13 0.98
3055 11051 7.676947 TGTCTACTTTTCAGGCTTGTAGTATT 58.323 34.615 0.00 0.00 34.13 1.89
3056 11052 7.241042 TGTCTACTTTTCAGGCTTGTAGTAT 57.759 36.000 0.00 0.00 34.13 2.12
3057 11053 6.659745 TGTCTACTTTTCAGGCTTGTAGTA 57.340 37.500 0.00 2.48 34.13 1.82
3058 11054 5.546621 TGTCTACTTTTCAGGCTTGTAGT 57.453 39.130 0.00 1.41 34.13 2.73
3059 11055 6.253727 CGTATGTCTACTTTTCAGGCTTGTAG 59.746 42.308 0.00 0.00 33.85 2.74
3060 11056 6.071784 TCGTATGTCTACTTTTCAGGCTTGTA 60.072 38.462 0.00 0.00 0.00 2.41
3061 11057 4.929808 CGTATGTCTACTTTTCAGGCTTGT 59.070 41.667 0.00 0.00 0.00 3.16
3062 11058 5.168569 TCGTATGTCTACTTTTCAGGCTTG 58.831 41.667 0.00 0.00 0.00 4.01
3063 11059 5.401531 TCGTATGTCTACTTTTCAGGCTT 57.598 39.130 0.00 0.00 0.00 4.35
3064 11060 5.361285 AGATCGTATGTCTACTTTTCAGGCT 59.639 40.000 0.00 0.00 0.00 4.58
3065 11061 5.593010 AGATCGTATGTCTACTTTTCAGGC 58.407 41.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.