Multiple sequence alignment - TraesCS1D01G117400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G117400 | chr1D | 100.000 | 6962 | 0 | 0 | 1 | 6962 | 113877686 | 113870725 | 0.000000e+00 | 12857.0 |
1 | TraesCS1D01G117400 | chr1D | 100.000 | 65 | 0 | 0 | 7314 | 7378 | 113870373 | 113870309 | 3.620000e-23 | 121.0 |
2 | TraesCS1D01G117400 | chr1B | 96.541 | 5349 | 112 | 23 | 1648 | 6942 | 173977189 | 173971860 | 0.000000e+00 | 8785.0 |
3 | TraesCS1D01G117400 | chr1B | 92.450 | 1245 | 50 | 15 | 366 | 1581 | 173978415 | 173977186 | 0.000000e+00 | 1738.0 |
4 | TraesCS1D01G117400 | chr1B | 92.199 | 282 | 19 | 3 | 1 | 280 | 174087578 | 174087298 | 5.360000e-106 | 396.0 |
5 | TraesCS1D01G117400 | chr1B | 98.113 | 53 | 1 | 0 | 6910 | 6962 | 173971862 | 173971810 | 7.880000e-15 | 93.5 |
6 | TraesCS1D01G117400 | chr1A | 95.733 | 5226 | 144 | 27 | 1417 | 6591 | 121745447 | 121740250 | 0.000000e+00 | 8342.0 |
7 | TraesCS1D01G117400 | chr1A | 91.870 | 738 | 31 | 15 | 369 | 1092 | 121746511 | 121745789 | 0.000000e+00 | 1003.0 |
8 | TraesCS1D01G117400 | chr1A | 96.467 | 368 | 8 | 4 | 6593 | 6956 | 121740160 | 121739794 | 2.940000e-168 | 603.0 |
9 | TraesCS1D01G117400 | chr1A | 93.631 | 314 | 16 | 2 | 1126 | 1435 | 121745790 | 121745477 | 4.030000e-127 | 466.0 |
10 | TraesCS1D01G117400 | chr1A | 88.393 | 112 | 7 | 5 | 191 | 302 | 121746618 | 121746513 | 6.010000e-26 | 130.0 |
11 | TraesCS1D01G117400 | chr6B | 93.370 | 4148 | 194 | 37 | 1477 | 5578 | 84124817 | 84128929 | 0.000000e+00 | 6061.0 |
12 | TraesCS1D01G117400 | chr6B | 85.617 | 1175 | 83 | 41 | 5771 | 6880 | 84129027 | 84130180 | 0.000000e+00 | 1155.0 |
13 | TraesCS1D01G117400 | chr6B | 82.188 | 640 | 57 | 31 | 784 | 1393 | 84124213 | 84124825 | 1.430000e-136 | 497.0 |
14 | TraesCS1D01G117400 | chr6B | 85.629 | 167 | 7 | 5 | 559 | 708 | 84120029 | 84120195 | 7.660000e-35 | 159.0 |
15 | TraesCS1D01G117400 | chr6B | 86.466 | 133 | 11 | 3 | 450 | 576 | 84119864 | 84119995 | 9.980000e-29 | 139.0 |
16 | TraesCS1D01G117400 | chr6A | 92.974 | 4156 | 204 | 34 | 1482 | 5578 | 47898178 | 47902304 | 0.000000e+00 | 5976.0 |
17 | TraesCS1D01G117400 | chr6A | 88.530 | 837 | 62 | 16 | 5674 | 6495 | 47902322 | 47903139 | 0.000000e+00 | 983.0 |
18 | TraesCS1D01G117400 | chr6A | 81.818 | 583 | 47 | 25 | 843 | 1393 | 47897624 | 47898179 | 1.140000e-117 | 435.0 |
19 | TraesCS1D01G117400 | chr6A | 83.333 | 252 | 30 | 8 | 6654 | 6895 | 47903386 | 47903635 | 9.630000e-54 | 222.0 |
20 | TraesCS1D01G117400 | chr6A | 84.500 | 200 | 14 | 9 | 6505 | 6692 | 47903189 | 47903383 | 1.640000e-41 | 182.0 |
21 | TraesCS1D01G117400 | chr6A | 84.091 | 176 | 8 | 6 | 559 | 714 | 47893471 | 47893646 | 1.280000e-32 | 152.0 |
22 | TraesCS1D01G117400 | chr6A | 84.000 | 150 | 12 | 6 | 438 | 576 | 47893298 | 47893446 | 4.640000e-27 | 134.0 |
23 | TraesCS1D01G117400 | chrUn | 94.054 | 3330 | 159 | 13 | 1487 | 4800 | 143898862 | 143902168 | 0.000000e+00 | 5016.0 |
24 | TraesCS1D01G117400 | chrUn | 93.532 | 773 | 40 | 7 | 4816 | 5584 | 143902244 | 143903010 | 0.000000e+00 | 1142.0 |
25 | TraesCS1D01G117400 | chrUn | 90.848 | 743 | 46 | 12 | 5771 | 6494 | 143903082 | 143903821 | 0.000000e+00 | 976.0 |
26 | TraesCS1D01G117400 | chrUn | 82.175 | 662 | 55 | 31 | 784 | 1396 | 143898214 | 143898861 | 1.840000e-140 | 510.0 |
27 | TraesCS1D01G117400 | chrUn | 78.709 | 728 | 98 | 37 | 1687 | 2364 | 75223049 | 75223769 | 4.090000e-117 | 433.0 |
28 | TraesCS1D01G117400 | chrUn | 86.189 | 391 | 41 | 4 | 1487 | 1872 | 104961816 | 104962198 | 1.920000e-110 | 411.0 |
29 | TraesCS1D01G117400 | chrUn | 79.936 | 314 | 18 | 11 | 446 | 715 | 143894336 | 143894648 | 9.770000e-44 | 189.0 |
30 | TraesCS1D01G117400 | chr3D | 94.583 | 1403 | 63 | 7 | 1576 | 2975 | 7924966 | 7923574 | 0.000000e+00 | 2158.0 |
31 | TraesCS1D01G117400 | chr7D | 86.869 | 396 | 38 | 5 | 1485 | 1875 | 27866464 | 27866078 | 1.470000e-116 | 431.0 |
32 | TraesCS1D01G117400 | chr5B | 86.689 | 293 | 34 | 4 | 1585 | 1872 | 380782937 | 380783229 | 3.320000e-83 | 320.0 |
33 | TraesCS1D01G117400 | chr3B | 78.065 | 310 | 66 | 2 | 3395 | 3703 | 525608744 | 525609052 | 2.100000e-45 | 195.0 |
34 | TraesCS1D01G117400 | chr6D | 79.921 | 254 | 30 | 13 | 1687 | 1928 | 468945629 | 468945873 | 4.580000e-37 | 167.0 |
35 | TraesCS1D01G117400 | chr6D | 81.935 | 155 | 15 | 7 | 2104 | 2248 | 468585696 | 468585545 | 1.300000e-22 | 119.0 |
36 | TraesCS1D01G117400 | chr6D | 81.818 | 143 | 20 | 3 | 922 | 1064 | 468914781 | 468914917 | 1.680000e-21 | 115.0 |
37 | TraesCS1D01G117400 | chr6D | 88.372 | 86 | 7 | 2 | 2194 | 2276 | 468916504 | 468916589 | 4.710000e-17 | 100.0 |
38 | TraesCS1D01G117400 | chr5A | 81.250 | 96 | 16 | 1 | 209 | 304 | 36022238 | 36022331 | 7.940000e-10 | 76.8 |
39 | TraesCS1D01G117400 | chr5D | 86.441 | 59 | 8 | 0 | 209 | 267 | 45249435 | 45249493 | 1.720000e-06 | 65.8 |
40 | TraesCS1D01G117400 | chr5D | 94.444 | 36 | 2 | 0 | 234 | 269 | 473485294 | 473485259 | 1.000000e-03 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G117400 | chr1D | 113870309 | 113877686 | 7377 | True | 6489.000000 | 12857 | 100.000000 | 1 | 7378 | 2 | chr1D.!!$R1 | 7377 |
1 | TraesCS1D01G117400 | chr1B | 173971810 | 173978415 | 6605 | True | 3538.833333 | 8785 | 95.701333 | 366 | 6962 | 3 | chr1B.!!$R2 | 6596 |
2 | TraesCS1D01G117400 | chr1A | 121739794 | 121746618 | 6824 | True | 2108.800000 | 8342 | 93.218800 | 191 | 6956 | 5 | chr1A.!!$R1 | 6765 |
3 | TraesCS1D01G117400 | chr6B | 84124213 | 84130180 | 5967 | False | 2571.000000 | 6061 | 87.058333 | 784 | 6880 | 3 | chr6B.!!$F2 | 6096 |
4 | TraesCS1D01G117400 | chr6A | 47893298 | 47903635 | 10337 | False | 1154.857143 | 5976 | 85.606571 | 438 | 6895 | 7 | chr6A.!!$F1 | 6457 |
5 | TraesCS1D01G117400 | chrUn | 143894336 | 143903821 | 9485 | False | 1566.600000 | 5016 | 88.109000 | 446 | 6494 | 5 | chrUn.!!$F3 | 6048 |
6 | TraesCS1D01G117400 | chrUn | 75223049 | 75223769 | 720 | False | 433.000000 | 433 | 78.709000 | 1687 | 2364 | 1 | chrUn.!!$F1 | 677 |
7 | TraesCS1D01G117400 | chr3D | 7923574 | 7924966 | 1392 | True | 2158.000000 | 2158 | 94.583000 | 1576 | 2975 | 1 | chr3D.!!$R1 | 1399 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
79 | 80 | 1.000607 | CTCCCGTGAGAAGTTTCGTGA | 60.001 | 52.381 | 0.00 | 0.00 | 41.42 | 4.35 | F |
428 | 429 | 1.399440 | TCGCCGGCGATATACTATCAC | 59.601 | 52.381 | 45.37 | 0.97 | 44.01 | 3.06 | F |
1466 | 5756 | 1.187974 | TCCTTTCAATGCCATGCCAG | 58.812 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 | F |
2484 | 6873 | 1.051812 | CCCCTGATCGCCACTCTATT | 58.948 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 | F |
3002 | 7397 | 1.167851 | CAGGGTTGATGATGCACGTT | 58.832 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 | F |
3109 | 7504 | 3.614616 | GCTTCTTCTTCCAGTATCGTGTG | 59.385 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 | F |
4483 | 8894 | 3.928992 | GTCTGTGTTCATCATGACGACAT | 59.071 | 43.478 | 0.00 | 0.00 | 37.19 | 3.06 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1325 | 5559 | 0.035820 | GCCACCATTAACGGACAGGA | 60.036 | 55.000 | 0.00 | 0.0 | 0.00 | 3.86 | R |
1793 | 6121 | 0.387239 | GGCAACAAAGACATCACCGC | 60.387 | 55.000 | 0.00 | 0.0 | 0.00 | 5.68 | R |
3109 | 7504 | 1.284657 | CATCACGCACTGGATGAGTC | 58.715 | 55.000 | 0.00 | 0.0 | 42.73 | 3.36 | R |
3522 | 7922 | 3.367025 | GCGACTCAAACGTTAACATAGCT | 59.633 | 43.478 | 0.00 | 0.0 | 0.00 | 3.32 | R |
4917 | 9393 | 4.455606 | GACCTTTCATCCTCATAACCTGG | 58.544 | 47.826 | 0.00 | 0.0 | 0.00 | 4.45 | R |
5174 | 9651 | 7.645058 | AAAGAAAATCTCACTTCCAGTTTCA | 57.355 | 32.000 | 0.00 | 0.0 | 0.00 | 2.69 | R |
6503 | 11051 | 1.080093 | CGCTGCAGGTTTCGTAGGA | 60.080 | 57.895 | 17.12 | 0.0 | 0.00 | 2.94 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 7.552050 | AAAAATATGGAACTTGGGATGTCAA | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
41 | 42 | 7.552050 | AAAATATGGAACTTGGGATGTCAAA | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
42 | 43 | 6.530019 | AATATGGAACTTGGGATGTCAAAC | 57.470 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
43 | 44 | 3.593442 | TGGAACTTGGGATGTCAAACT | 57.407 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
44 | 45 | 3.909732 | TGGAACTTGGGATGTCAAACTT | 58.090 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
45 | 46 | 3.636300 | TGGAACTTGGGATGTCAAACTTG | 59.364 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
46 | 47 | 3.005791 | GGAACTTGGGATGTCAAACTTGG | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
47 | 48 | 2.597455 | ACTTGGGATGTCAAACTTGGG | 58.403 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
48 | 49 | 2.091333 | ACTTGGGATGTCAAACTTGGGT | 60.091 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
49 | 50 | 3.139397 | ACTTGGGATGTCAAACTTGGGTA | 59.861 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
50 | 51 | 3.149005 | TGGGATGTCAAACTTGGGTAC | 57.851 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
67 | 68 | 3.825328 | GGTACCTAATCTACTCCCGTGA | 58.175 | 50.000 | 4.06 | 0.00 | 0.00 | 4.35 |
68 | 69 | 3.819902 | GGTACCTAATCTACTCCCGTGAG | 59.180 | 52.174 | 4.06 | 0.00 | 44.62 | 3.51 |
69 | 70 | 3.947612 | ACCTAATCTACTCCCGTGAGA | 57.052 | 47.619 | 0.58 | 0.00 | 41.42 | 3.27 |
70 | 71 | 4.246712 | ACCTAATCTACTCCCGTGAGAA | 57.753 | 45.455 | 0.58 | 0.00 | 41.42 | 2.87 |
71 | 72 | 4.208746 | ACCTAATCTACTCCCGTGAGAAG | 58.791 | 47.826 | 0.58 | 0.00 | 41.42 | 2.85 |
72 | 73 | 4.208746 | CCTAATCTACTCCCGTGAGAAGT | 58.791 | 47.826 | 0.58 | 0.00 | 41.42 | 3.01 |
73 | 74 | 4.645588 | CCTAATCTACTCCCGTGAGAAGTT | 59.354 | 45.833 | 0.58 | 0.00 | 41.42 | 2.66 |
74 | 75 | 5.127356 | CCTAATCTACTCCCGTGAGAAGTTT | 59.873 | 44.000 | 0.58 | 0.00 | 41.42 | 2.66 |
75 | 76 | 4.722361 | ATCTACTCCCGTGAGAAGTTTC | 57.278 | 45.455 | 0.58 | 0.00 | 41.42 | 2.78 |
76 | 77 | 2.486982 | TCTACTCCCGTGAGAAGTTTCG | 59.513 | 50.000 | 0.58 | 0.00 | 41.42 | 3.46 |
77 | 78 | 1.038280 | ACTCCCGTGAGAAGTTTCGT | 58.962 | 50.000 | 0.58 | 0.00 | 41.42 | 3.85 |
78 | 79 | 1.269621 | ACTCCCGTGAGAAGTTTCGTG | 60.270 | 52.381 | 0.58 | 0.00 | 41.42 | 4.35 |
79 | 80 | 1.000607 | CTCCCGTGAGAAGTTTCGTGA | 60.001 | 52.381 | 0.00 | 0.00 | 41.42 | 4.35 |
80 | 81 | 1.409790 | TCCCGTGAGAAGTTTCGTGAA | 59.590 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
81 | 82 | 1.792949 | CCCGTGAGAAGTTTCGTGAAG | 59.207 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
82 | 83 | 2.545113 | CCCGTGAGAAGTTTCGTGAAGA | 60.545 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
83 | 84 | 3.120792 | CCGTGAGAAGTTTCGTGAAGAA | 58.879 | 45.455 | 0.00 | 0.00 | 37.01 | 2.52 |
84 | 85 | 3.741344 | CCGTGAGAAGTTTCGTGAAGAAT | 59.259 | 43.478 | 0.00 | 0.00 | 38.86 | 2.40 |
85 | 86 | 4.921515 | CCGTGAGAAGTTTCGTGAAGAATA | 59.078 | 41.667 | 0.00 | 0.00 | 38.86 | 1.75 |
86 | 87 | 5.577164 | CCGTGAGAAGTTTCGTGAAGAATAT | 59.423 | 40.000 | 0.00 | 0.00 | 38.86 | 1.28 |
87 | 88 | 6.237595 | CCGTGAGAAGTTTCGTGAAGAATATC | 60.238 | 42.308 | 0.00 | 0.00 | 38.86 | 1.63 |
88 | 89 | 6.237595 | CGTGAGAAGTTTCGTGAAGAATATCC | 60.238 | 42.308 | 0.00 | 0.00 | 38.86 | 2.59 |
89 | 90 | 6.590292 | GTGAGAAGTTTCGTGAAGAATATCCA | 59.410 | 38.462 | 0.00 | 0.00 | 38.86 | 3.41 |
90 | 91 | 7.278868 | GTGAGAAGTTTCGTGAAGAATATCCAT | 59.721 | 37.037 | 0.00 | 0.00 | 38.86 | 3.41 |
91 | 92 | 7.278646 | TGAGAAGTTTCGTGAAGAATATCCATG | 59.721 | 37.037 | 0.00 | 0.00 | 38.86 | 3.66 |
92 | 93 | 7.331026 | AGAAGTTTCGTGAAGAATATCCATGA | 58.669 | 34.615 | 0.00 | 0.00 | 38.86 | 3.07 |
93 | 94 | 7.989741 | AGAAGTTTCGTGAAGAATATCCATGAT | 59.010 | 33.333 | 0.00 | 0.00 | 38.86 | 2.45 |
94 | 95 | 9.261180 | GAAGTTTCGTGAAGAATATCCATGATA | 57.739 | 33.333 | 0.00 | 0.00 | 38.86 | 2.15 |
95 | 96 | 9.784531 | AAGTTTCGTGAAGAATATCCATGATAT | 57.215 | 29.630 | 0.00 | 0.00 | 38.86 | 1.63 |
96 | 97 | 9.784531 | AGTTTCGTGAAGAATATCCATGATATT | 57.215 | 29.630 | 8.65 | 8.65 | 44.72 | 1.28 |
150 | 151 | 9.747898 | ATGTATAGTAAAAACTGTTTGGATGGA | 57.252 | 29.630 | 6.53 | 0.00 | 0.00 | 3.41 |
151 | 152 | 9.005777 | TGTATAGTAAAAACTGTTTGGATGGAC | 57.994 | 33.333 | 6.53 | 1.81 | 0.00 | 4.02 |
152 | 153 | 5.784578 | AGTAAAAACTGTTTGGATGGACC | 57.215 | 39.130 | 6.53 | 0.00 | 39.54 | 4.46 |
153 | 154 | 3.726291 | AAAAACTGTTTGGATGGACCG | 57.274 | 42.857 | 6.53 | 0.00 | 42.61 | 4.79 |
154 | 155 | 2.358322 | AAACTGTTTGGATGGACCGT | 57.642 | 45.000 | 4.73 | 0.00 | 42.61 | 4.83 |
155 | 156 | 3.495434 | AAACTGTTTGGATGGACCGTA | 57.505 | 42.857 | 4.73 | 0.00 | 42.61 | 4.02 |
156 | 157 | 2.762535 | ACTGTTTGGATGGACCGTAG | 57.237 | 50.000 | 0.00 | 0.00 | 42.61 | 3.51 |
157 | 158 | 2.253610 | ACTGTTTGGATGGACCGTAGA | 58.746 | 47.619 | 0.00 | 0.00 | 42.61 | 2.59 |
158 | 159 | 2.838202 | ACTGTTTGGATGGACCGTAGAT | 59.162 | 45.455 | 0.00 | 0.00 | 42.61 | 1.98 |
159 | 160 | 3.263425 | ACTGTTTGGATGGACCGTAGATT | 59.737 | 43.478 | 0.00 | 0.00 | 42.61 | 2.40 |
160 | 161 | 3.605634 | TGTTTGGATGGACCGTAGATTG | 58.394 | 45.455 | 0.00 | 0.00 | 42.61 | 2.67 |
161 | 162 | 2.943033 | GTTTGGATGGACCGTAGATTGG | 59.057 | 50.000 | 0.00 | 0.00 | 42.61 | 3.16 |
162 | 163 | 2.168458 | TGGATGGACCGTAGATTGGA | 57.832 | 50.000 | 0.00 | 0.00 | 42.61 | 3.53 |
163 | 164 | 2.473070 | TGGATGGACCGTAGATTGGAA | 58.527 | 47.619 | 0.00 | 0.00 | 42.61 | 3.53 |
164 | 165 | 3.045634 | TGGATGGACCGTAGATTGGAAT | 58.954 | 45.455 | 0.00 | 0.00 | 42.61 | 3.01 |
165 | 166 | 3.181455 | TGGATGGACCGTAGATTGGAATG | 60.181 | 47.826 | 0.00 | 0.00 | 42.61 | 2.67 |
166 | 167 | 2.325583 | TGGACCGTAGATTGGAATGC | 57.674 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
167 | 168 | 1.557371 | TGGACCGTAGATTGGAATGCA | 59.443 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
168 | 169 | 2.172505 | TGGACCGTAGATTGGAATGCAT | 59.827 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
169 | 170 | 3.214328 | GGACCGTAGATTGGAATGCATT | 58.786 | 45.455 | 12.83 | 12.83 | 0.00 | 3.56 |
170 | 171 | 3.632145 | GGACCGTAGATTGGAATGCATTT | 59.368 | 43.478 | 14.33 | 0.00 | 0.00 | 2.32 |
171 | 172 | 4.097892 | GGACCGTAGATTGGAATGCATTTT | 59.902 | 41.667 | 14.33 | 0.00 | 0.00 | 1.82 |
172 | 173 | 5.248870 | ACCGTAGATTGGAATGCATTTTC | 57.751 | 39.130 | 14.33 | 9.81 | 0.00 | 2.29 |
173 | 174 | 4.949856 | ACCGTAGATTGGAATGCATTTTCT | 59.050 | 37.500 | 14.33 | 14.83 | 0.00 | 2.52 |
174 | 175 | 5.418840 | ACCGTAGATTGGAATGCATTTTCTT | 59.581 | 36.000 | 14.33 | 0.00 | 0.00 | 2.52 |
175 | 176 | 6.071391 | ACCGTAGATTGGAATGCATTTTCTTT | 60.071 | 34.615 | 14.33 | 1.35 | 0.00 | 2.52 |
176 | 177 | 7.122055 | ACCGTAGATTGGAATGCATTTTCTTTA | 59.878 | 33.333 | 14.33 | 0.42 | 0.00 | 1.85 |
177 | 178 | 8.137437 | CCGTAGATTGGAATGCATTTTCTTTAT | 58.863 | 33.333 | 14.33 | 2.17 | 0.00 | 1.40 |
178 | 179 | 9.173939 | CGTAGATTGGAATGCATTTTCTTTATC | 57.826 | 33.333 | 14.33 | 10.58 | 0.00 | 1.75 |
180 | 181 | 8.937634 | AGATTGGAATGCATTTTCTTTATCAC | 57.062 | 30.769 | 14.33 | 0.00 | 0.00 | 3.06 |
181 | 182 | 7.703621 | AGATTGGAATGCATTTTCTTTATCACG | 59.296 | 33.333 | 14.33 | 0.00 | 0.00 | 4.35 |
182 | 183 | 5.649557 | TGGAATGCATTTTCTTTATCACGG | 58.350 | 37.500 | 14.33 | 0.00 | 0.00 | 4.94 |
183 | 184 | 5.417266 | TGGAATGCATTTTCTTTATCACGGA | 59.583 | 36.000 | 14.33 | 0.00 | 0.00 | 4.69 |
184 | 185 | 6.096705 | TGGAATGCATTTTCTTTATCACGGAT | 59.903 | 34.615 | 14.33 | 0.00 | 0.00 | 4.18 |
185 | 186 | 6.418819 | GGAATGCATTTTCTTTATCACGGATG | 59.581 | 38.462 | 14.33 | 0.00 | 0.00 | 3.51 |
186 | 187 | 4.671377 | TGCATTTTCTTTATCACGGATGC | 58.329 | 39.130 | 0.00 | 0.00 | 39.15 | 3.91 |
187 | 188 | 4.044426 | GCATTTTCTTTATCACGGATGCC | 58.956 | 43.478 | 0.00 | 0.00 | 34.21 | 4.40 |
188 | 189 | 4.439974 | GCATTTTCTTTATCACGGATGCCA | 60.440 | 41.667 | 0.00 | 0.00 | 34.21 | 4.92 |
189 | 190 | 4.695217 | TTTTCTTTATCACGGATGCCAC | 57.305 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
196 | 197 | 1.647346 | TCACGGATGCCACGTATTTC | 58.353 | 50.000 | 0.00 | 0.00 | 43.58 | 2.17 |
207 | 208 | 4.517075 | TGCCACGTATTTCATTTCTTCACA | 59.483 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
251 | 252 | 3.138283 | TGGACACCCAGATTTGATATCCC | 59.862 | 47.826 | 0.00 | 0.00 | 37.58 | 3.85 |
255 | 256 | 5.588845 | ACACCCAGATTTGATATCCCAAAA | 58.411 | 37.500 | 0.00 | 0.00 | 39.20 | 2.44 |
259 | 260 | 7.712205 | CACCCAGATTTGATATCCCAAAATTTC | 59.288 | 37.037 | 0.00 | 0.00 | 39.20 | 2.17 |
260 | 261 | 7.402650 | ACCCAGATTTGATATCCCAAAATTTCA | 59.597 | 33.333 | 0.00 | 0.00 | 39.20 | 2.69 |
261 | 262 | 7.929785 | CCCAGATTTGATATCCCAAAATTTCAG | 59.070 | 37.037 | 0.00 | 0.00 | 39.20 | 3.02 |
329 | 330 | 9.628500 | AAGTACTTCCTCTGTTTTGAAATAAGT | 57.372 | 29.630 | 1.12 | 0.00 | 0.00 | 2.24 |
330 | 331 | 9.057089 | AGTACTTCCTCTGTTTTGAAATAAGTG | 57.943 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
331 | 332 | 7.881775 | ACTTCCTCTGTTTTGAAATAAGTGT | 57.118 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
332 | 333 | 7.931275 | ACTTCCTCTGTTTTGAAATAAGTGTC | 58.069 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
333 | 334 | 7.775561 | ACTTCCTCTGTTTTGAAATAAGTGTCT | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
334 | 335 | 8.519799 | TTCCTCTGTTTTGAAATAAGTGTCTT | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
335 | 336 | 8.519799 | TCCTCTGTTTTGAAATAAGTGTCTTT | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
336 | 337 | 9.621629 | TCCTCTGTTTTGAAATAAGTGTCTTTA | 57.378 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
428 | 429 | 1.399440 | TCGCCGGCGATATACTATCAC | 59.601 | 52.381 | 45.37 | 0.97 | 44.01 | 3.06 |
644 | 706 | 1.843368 | AGAACGGATTACCAGACGGA | 58.157 | 50.000 | 0.00 | 0.00 | 35.59 | 4.69 |
1105 | 5297 | 2.556144 | GGTACGTTTGTCTTTCCCCT | 57.444 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1325 | 5559 | 2.627945 | TCGTAGATTTGCCGCATTTCT | 58.372 | 42.857 | 9.72 | 9.72 | 0.00 | 2.52 |
1466 | 5756 | 1.187974 | TCCTTTCAATGCCATGCCAG | 58.812 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1656 | 5967 | 1.680338 | GTACATGGGGGATTGCTGTC | 58.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1793 | 6121 | 1.101049 | ACTGTTGGTGTTTCGGCCAG | 61.101 | 55.000 | 2.24 | 0.00 | 36.00 | 4.85 |
1809 | 6137 | 1.238439 | CCAGCGGTGATGTCTTTGTT | 58.762 | 50.000 | 17.83 | 0.00 | 0.00 | 2.83 |
2484 | 6873 | 1.051812 | CCCCTGATCGCCACTCTATT | 58.948 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3002 | 7397 | 1.167851 | CAGGGTTGATGATGCACGTT | 58.832 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
3109 | 7504 | 3.614616 | GCTTCTTCTTCCAGTATCGTGTG | 59.385 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
3281 | 7678 | 7.388437 | AGTTACGACAAATGGGTCTACATTTA | 58.612 | 34.615 | 4.10 | 0.00 | 46.27 | 1.40 |
3522 | 7922 | 5.499313 | TGCTATGTTTCTGATGATGGTTCA | 58.501 | 37.500 | 0.00 | 0.00 | 36.00 | 3.18 |
3531 | 7931 | 6.484364 | TCTGATGATGGTTCAGCTATGTTA | 57.516 | 37.500 | 0.00 | 0.00 | 40.35 | 2.41 |
3710 | 8110 | 4.122776 | CGAGCAATGAAGGTAAGCTACAT | 58.877 | 43.478 | 0.00 | 0.00 | 35.36 | 2.29 |
3789 | 8189 | 6.311690 | GGTATGCTTTGTTTCAGAGAGAGTAC | 59.688 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
4483 | 8894 | 3.928992 | GTCTGTGTTCATCATGACGACAT | 59.071 | 43.478 | 0.00 | 0.00 | 37.19 | 3.06 |
4917 | 9393 | 8.655092 | CAACTAATCACTCTTTCTGAATCTCAC | 58.345 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
5304 | 9781 | 0.659427 | CAATCTACTGCATGCCACCG | 59.341 | 55.000 | 16.68 | 3.50 | 0.00 | 4.94 |
5382 | 9859 | 2.370445 | CCGATGGGCTCTTGGGTCT | 61.370 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
5517 | 9994 | 4.523083 | TCCCACTTATTGCCTATTGTGTC | 58.477 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
5535 | 10012 | 2.762887 | TGTCCTTCCTGCTATCTGTCTG | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5661 | 10138 | 8.755977 | AGAGAAAAATGTTTTGGCTGATCATAT | 58.244 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
5707 | 10184 | 8.306313 | TGTCCTTCTAGTTAAATCTCTGCATA | 57.694 | 34.615 | 0.00 | 0.00 | 0.00 | 3.14 |
6167 | 10645 | 0.104409 | AGTCCTGGGGTCCACTCTTT | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6420 | 10915 | 1.068127 | CCCCTCGTGTAAATACCGGAG | 59.932 | 57.143 | 9.46 | 0.00 | 0.00 | 4.63 |
6503 | 11051 | 4.263639 | GCCCCTTTGTTAGTAGTACCCTTT | 60.264 | 45.833 | 0.00 | 0.00 | 0.00 | 3.11 |
6537 | 11088 | 4.225984 | TGCAGCGTACATTGTGATTTTTC | 58.774 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
6540 | 11091 | 4.853196 | CAGCGTACATTGTGATTTTTCCTG | 59.147 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
6546 | 11102 | 5.776744 | ACATTGTGATTTTTCCTGCTCTTC | 58.223 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
6558 | 11117 | 3.072915 | TCCTGCTCTTCTTCCATTTGTGA | 59.927 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
6619 | 11269 | 6.809689 | TGTCAGAACGTATTTACACACTATGG | 59.190 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
6622 | 11272 | 6.257849 | CAGAACGTATTTACACACTATGGCAT | 59.742 | 38.462 | 4.88 | 4.88 | 0.00 | 4.40 |
6759 | 11476 | 2.965572 | AATTTGGCATGAACCGATGG | 57.034 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7334 | 12084 | 3.110139 | CGCAAGGTGTGTGCAACT | 58.890 | 55.556 | 0.00 | 0.00 | 46.21 | 3.16 |
7341 | 12091 | 2.446435 | AGGTGTGTGCAACTTTTCAGT | 58.554 | 42.857 | 0.00 | 0.00 | 40.28 | 3.41 |
7342 | 12092 | 2.164219 | AGGTGTGTGCAACTTTTCAGTG | 59.836 | 45.455 | 0.00 | 0.00 | 40.28 | 3.66 |
7343 | 12093 | 2.094752 | GGTGTGTGCAACTTTTCAGTGT | 60.095 | 45.455 | 0.00 | 0.00 | 38.04 | 3.55 |
7344 | 12094 | 3.574614 | GTGTGTGCAACTTTTCAGTGTT | 58.425 | 40.909 | 0.00 | 0.00 | 38.04 | 3.32 |
7345 | 12095 | 4.380023 | GGTGTGTGCAACTTTTCAGTGTTA | 60.380 | 41.667 | 0.00 | 0.00 | 38.04 | 2.41 |
7346 | 12096 | 4.793216 | GTGTGTGCAACTTTTCAGTGTTAG | 59.207 | 41.667 | 0.00 | 0.00 | 38.04 | 2.34 |
7347 | 12097 | 4.142491 | TGTGTGCAACTTTTCAGTGTTAGG | 60.142 | 41.667 | 0.00 | 0.00 | 38.04 | 2.69 |
7348 | 12098 | 4.095782 | GTGTGCAACTTTTCAGTGTTAGGA | 59.904 | 41.667 | 0.00 | 0.00 | 38.04 | 2.94 |
7349 | 12099 | 4.095782 | TGTGCAACTTTTCAGTGTTAGGAC | 59.904 | 41.667 | 0.00 | 0.00 | 38.04 | 3.85 |
7350 | 12100 | 4.095782 | GTGCAACTTTTCAGTGTTAGGACA | 59.904 | 41.667 | 0.00 | 0.00 | 31.60 | 4.02 |
7351 | 12101 | 4.887071 | TGCAACTTTTCAGTGTTAGGACAT | 59.113 | 37.500 | 0.00 | 0.00 | 38.23 | 3.06 |
7352 | 12102 | 5.359576 | TGCAACTTTTCAGTGTTAGGACATT | 59.640 | 36.000 | 0.00 | 0.00 | 38.23 | 2.71 |
7353 | 12103 | 6.127479 | TGCAACTTTTCAGTGTTAGGACATTT | 60.127 | 34.615 | 0.00 | 0.00 | 38.23 | 2.32 |
7354 | 12104 | 6.198966 | GCAACTTTTCAGTGTTAGGACATTTG | 59.801 | 38.462 | 0.00 | 0.00 | 38.23 | 2.32 |
7355 | 12105 | 7.479980 | CAACTTTTCAGTGTTAGGACATTTGA | 58.520 | 34.615 | 0.00 | 0.00 | 38.23 | 2.69 |
7356 | 12106 | 7.264373 | ACTTTTCAGTGTTAGGACATTTGAG | 57.736 | 36.000 | 0.00 | 0.00 | 38.23 | 3.02 |
7357 | 12107 | 6.263168 | ACTTTTCAGTGTTAGGACATTTGAGG | 59.737 | 38.462 | 0.00 | 0.00 | 38.23 | 3.86 |
7358 | 12108 | 5.560722 | TTCAGTGTTAGGACATTTGAGGA | 57.439 | 39.130 | 0.00 | 0.00 | 38.23 | 3.71 |
7359 | 12109 | 5.152623 | TCAGTGTTAGGACATTTGAGGAG | 57.847 | 43.478 | 0.00 | 0.00 | 38.23 | 3.69 |
7360 | 12110 | 3.686726 | CAGTGTTAGGACATTTGAGGAGC | 59.313 | 47.826 | 0.00 | 0.00 | 38.23 | 4.70 |
7361 | 12111 | 3.327757 | AGTGTTAGGACATTTGAGGAGCA | 59.672 | 43.478 | 0.00 | 0.00 | 38.23 | 4.26 |
7362 | 12112 | 3.437049 | GTGTTAGGACATTTGAGGAGCAC | 59.563 | 47.826 | 0.00 | 0.00 | 38.23 | 4.40 |
7363 | 12113 | 2.672961 | TAGGACATTTGAGGAGCACG | 57.327 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
7364 | 12114 | 0.687354 | AGGACATTTGAGGAGCACGT | 59.313 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
7365 | 12115 | 0.798776 | GGACATTTGAGGAGCACGTG | 59.201 | 55.000 | 12.28 | 12.28 | 0.00 | 4.49 |
7366 | 12116 | 1.608025 | GGACATTTGAGGAGCACGTGA | 60.608 | 52.381 | 22.23 | 0.00 | 0.00 | 4.35 |
7367 | 12117 | 2.143122 | GACATTTGAGGAGCACGTGAA | 58.857 | 47.619 | 22.23 | 2.43 | 0.00 | 3.18 |
7368 | 12118 | 2.548057 | GACATTTGAGGAGCACGTGAAA | 59.452 | 45.455 | 22.23 | 10.08 | 0.00 | 2.69 |
7369 | 12119 | 2.948979 | ACATTTGAGGAGCACGTGAAAA | 59.051 | 40.909 | 22.23 | 9.26 | 0.00 | 2.29 |
7370 | 12120 | 3.380004 | ACATTTGAGGAGCACGTGAAAAA | 59.620 | 39.130 | 22.23 | 9.61 | 0.00 | 1.94 |
7371 | 12121 | 3.691049 | TTTGAGGAGCACGTGAAAAAG | 57.309 | 42.857 | 22.23 | 0.00 | 0.00 | 2.27 |
7372 | 12122 | 2.613026 | TGAGGAGCACGTGAAAAAGA | 57.387 | 45.000 | 22.23 | 0.00 | 0.00 | 2.52 |
7373 | 12123 | 2.912771 | TGAGGAGCACGTGAAAAAGAA | 58.087 | 42.857 | 22.23 | 0.00 | 0.00 | 2.52 |
7374 | 12124 | 3.275143 | TGAGGAGCACGTGAAAAAGAAA | 58.725 | 40.909 | 22.23 | 0.00 | 0.00 | 2.52 |
7375 | 12125 | 3.692101 | TGAGGAGCACGTGAAAAAGAAAA | 59.308 | 39.130 | 22.23 | 0.00 | 0.00 | 2.29 |
7376 | 12126 | 4.338118 | TGAGGAGCACGTGAAAAAGAAAAT | 59.662 | 37.500 | 22.23 | 0.00 | 0.00 | 1.82 |
7377 | 12127 | 5.163561 | TGAGGAGCACGTGAAAAAGAAAATT | 60.164 | 36.000 | 22.23 | 0.00 | 0.00 | 1.82 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
16 | 17 | 7.552050 | TTGACATCCCAAGTTCCATATTTTT | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
17 | 18 | 7.235399 | AGTTTGACATCCCAAGTTCCATATTTT | 59.765 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
18 | 19 | 6.725834 | AGTTTGACATCCCAAGTTCCATATTT | 59.274 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
19 | 20 | 6.256053 | AGTTTGACATCCCAAGTTCCATATT | 58.744 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
20 | 21 | 5.831103 | AGTTTGACATCCCAAGTTCCATAT | 58.169 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
21 | 22 | 5.255397 | AGTTTGACATCCCAAGTTCCATA | 57.745 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
22 | 23 | 4.118168 | AGTTTGACATCCCAAGTTCCAT | 57.882 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
23 | 24 | 3.593442 | AGTTTGACATCCCAAGTTCCA | 57.407 | 42.857 | 0.00 | 0.00 | 0.00 | 3.53 |
24 | 25 | 3.005791 | CCAAGTTTGACATCCCAAGTTCC | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
25 | 26 | 3.005791 | CCCAAGTTTGACATCCCAAGTTC | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
26 | 27 | 2.965147 | CCCAAGTTTGACATCCCAAGTT | 59.035 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
27 | 28 | 2.091333 | ACCCAAGTTTGACATCCCAAGT | 60.091 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
28 | 29 | 2.597455 | ACCCAAGTTTGACATCCCAAG | 58.403 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
29 | 30 | 2.765689 | ACCCAAGTTTGACATCCCAA | 57.234 | 45.000 | 0.00 | 0.00 | 0.00 | 4.12 |
30 | 31 | 2.224917 | GGTACCCAAGTTTGACATCCCA | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
31 | 32 | 2.041216 | AGGTACCCAAGTTTGACATCCC | 59.959 | 50.000 | 8.74 | 0.00 | 0.00 | 3.85 |
32 | 33 | 3.434940 | AGGTACCCAAGTTTGACATCC | 57.565 | 47.619 | 8.74 | 0.00 | 0.00 | 3.51 |
33 | 34 | 6.415573 | AGATTAGGTACCCAAGTTTGACATC | 58.584 | 40.000 | 8.74 | 0.00 | 0.00 | 3.06 |
34 | 35 | 6.388619 | AGATTAGGTACCCAAGTTTGACAT | 57.611 | 37.500 | 8.74 | 0.00 | 0.00 | 3.06 |
35 | 36 | 5.836024 | AGATTAGGTACCCAAGTTTGACA | 57.164 | 39.130 | 8.74 | 0.00 | 0.00 | 3.58 |
36 | 37 | 6.944096 | AGTAGATTAGGTACCCAAGTTTGAC | 58.056 | 40.000 | 8.74 | 0.00 | 0.00 | 3.18 |
37 | 38 | 6.155737 | GGAGTAGATTAGGTACCCAAGTTTGA | 59.844 | 42.308 | 8.74 | 0.00 | 0.00 | 2.69 |
38 | 39 | 6.346896 | GGAGTAGATTAGGTACCCAAGTTTG | 58.653 | 44.000 | 8.74 | 0.00 | 0.00 | 2.93 |
39 | 40 | 5.427806 | GGGAGTAGATTAGGTACCCAAGTTT | 59.572 | 44.000 | 8.74 | 0.00 | 36.27 | 2.66 |
40 | 41 | 4.967442 | GGGAGTAGATTAGGTACCCAAGTT | 59.033 | 45.833 | 8.74 | 0.00 | 36.27 | 2.66 |
41 | 42 | 4.554683 | GGGAGTAGATTAGGTACCCAAGT | 58.445 | 47.826 | 8.74 | 0.00 | 36.27 | 3.16 |
42 | 43 | 3.573110 | CGGGAGTAGATTAGGTACCCAAG | 59.427 | 52.174 | 8.74 | 0.00 | 36.04 | 3.61 |
43 | 44 | 3.052642 | ACGGGAGTAGATTAGGTACCCAA | 60.053 | 47.826 | 8.74 | 0.43 | 44.60 | 4.12 |
44 | 45 | 2.515429 | ACGGGAGTAGATTAGGTACCCA | 59.485 | 50.000 | 8.74 | 0.00 | 44.60 | 4.51 |
45 | 46 | 2.889678 | CACGGGAGTAGATTAGGTACCC | 59.110 | 54.545 | 8.74 | 0.00 | 44.67 | 3.69 |
46 | 47 | 3.819902 | CTCACGGGAGTAGATTAGGTACC | 59.180 | 52.174 | 6.49 | 2.73 | 44.67 | 3.34 |
47 | 48 | 4.712476 | TCTCACGGGAGTAGATTAGGTAC | 58.288 | 47.826 | 15.72 | 0.00 | 44.67 | 3.34 |
48 | 49 | 5.104193 | ACTTCTCACGGGAGTAGATTAGGTA | 60.104 | 44.000 | 25.96 | 0.00 | 44.67 | 3.08 |
49 | 50 | 3.947612 | TCTCACGGGAGTAGATTAGGT | 57.052 | 47.619 | 15.72 | 0.00 | 44.67 | 3.08 |
50 | 51 | 4.208746 | ACTTCTCACGGGAGTAGATTAGG | 58.791 | 47.826 | 25.96 | 3.91 | 44.67 | 2.69 |
51 | 52 | 5.838531 | AACTTCTCACGGGAGTAGATTAG | 57.161 | 43.478 | 25.96 | 11.80 | 44.67 | 1.73 |
52 | 53 | 5.163683 | CGAAACTTCTCACGGGAGTAGATTA | 60.164 | 44.000 | 25.96 | 0.00 | 44.67 | 1.75 |
53 | 54 | 4.380655 | CGAAACTTCTCACGGGAGTAGATT | 60.381 | 45.833 | 25.96 | 20.43 | 44.67 | 2.40 |
54 | 55 | 3.128938 | CGAAACTTCTCACGGGAGTAGAT | 59.871 | 47.826 | 25.96 | 13.03 | 44.67 | 1.98 |
55 | 56 | 2.486982 | CGAAACTTCTCACGGGAGTAGA | 59.513 | 50.000 | 25.96 | 8.00 | 44.67 | 2.59 |
56 | 57 | 2.228343 | ACGAAACTTCTCACGGGAGTAG | 59.772 | 50.000 | 18.70 | 18.70 | 44.67 | 2.57 |
57 | 58 | 2.030540 | CACGAAACTTCTCACGGGAGTA | 60.031 | 50.000 | 15.72 | 3.75 | 44.67 | 2.59 |
59 | 60 | 1.000607 | TCACGAAACTTCTCACGGGAG | 60.001 | 52.381 | 8.88 | 8.88 | 42.80 | 4.30 |
60 | 61 | 1.034356 | TCACGAAACTTCTCACGGGA | 58.966 | 50.000 | 0.00 | 0.00 | 35.84 | 5.14 |
61 | 62 | 1.792949 | CTTCACGAAACTTCTCACGGG | 59.207 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
62 | 63 | 2.739292 | TCTTCACGAAACTTCTCACGG | 58.261 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
63 | 64 | 4.974103 | ATTCTTCACGAAACTTCTCACG | 57.026 | 40.909 | 0.00 | 0.00 | 34.79 | 4.35 |
64 | 65 | 6.590292 | TGGATATTCTTCACGAAACTTCTCAC | 59.410 | 38.462 | 0.00 | 0.00 | 34.79 | 3.51 |
65 | 66 | 6.697395 | TGGATATTCTTCACGAAACTTCTCA | 58.303 | 36.000 | 0.00 | 0.00 | 34.79 | 3.27 |
66 | 67 | 7.492669 | TCATGGATATTCTTCACGAAACTTCTC | 59.507 | 37.037 | 0.00 | 0.00 | 34.79 | 2.87 |
67 | 68 | 7.331026 | TCATGGATATTCTTCACGAAACTTCT | 58.669 | 34.615 | 0.00 | 0.00 | 34.79 | 2.85 |
68 | 69 | 7.539712 | TCATGGATATTCTTCACGAAACTTC | 57.460 | 36.000 | 0.00 | 0.00 | 34.79 | 3.01 |
69 | 70 | 9.784531 | ATATCATGGATATTCTTCACGAAACTT | 57.215 | 29.630 | 0.00 | 0.00 | 32.00 | 2.66 |
70 | 71 | 9.784531 | AATATCATGGATATTCTTCACGAAACT | 57.215 | 29.630 | 5.81 | 0.00 | 40.02 | 2.66 |
124 | 125 | 9.747898 | TCCATCCAAACAGTTTTTACTATACAT | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
125 | 126 | 9.005777 | GTCCATCCAAACAGTTTTTACTATACA | 57.994 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
126 | 127 | 8.456471 | GGTCCATCCAAACAGTTTTTACTATAC | 58.544 | 37.037 | 0.00 | 0.00 | 35.97 | 1.47 |
127 | 128 | 7.334921 | CGGTCCATCCAAACAGTTTTTACTATA | 59.665 | 37.037 | 0.00 | 0.00 | 35.57 | 1.31 |
128 | 129 | 6.150474 | CGGTCCATCCAAACAGTTTTTACTAT | 59.850 | 38.462 | 0.00 | 0.00 | 35.57 | 2.12 |
129 | 130 | 5.470777 | CGGTCCATCCAAACAGTTTTTACTA | 59.529 | 40.000 | 0.00 | 0.00 | 35.57 | 1.82 |
130 | 131 | 4.277423 | CGGTCCATCCAAACAGTTTTTACT | 59.723 | 41.667 | 0.00 | 0.00 | 35.57 | 2.24 |
131 | 132 | 4.037089 | ACGGTCCATCCAAACAGTTTTTAC | 59.963 | 41.667 | 0.00 | 0.00 | 35.57 | 2.01 |
132 | 133 | 4.208746 | ACGGTCCATCCAAACAGTTTTTA | 58.791 | 39.130 | 0.00 | 0.00 | 35.57 | 1.52 |
133 | 134 | 3.028130 | ACGGTCCATCCAAACAGTTTTT | 58.972 | 40.909 | 0.00 | 0.00 | 35.57 | 1.94 |
134 | 135 | 2.661718 | ACGGTCCATCCAAACAGTTTT | 58.338 | 42.857 | 0.00 | 0.00 | 35.57 | 2.43 |
135 | 136 | 2.358322 | ACGGTCCATCCAAACAGTTT | 57.642 | 45.000 | 0.00 | 0.00 | 35.57 | 2.66 |
136 | 137 | 2.635915 | TCTACGGTCCATCCAAACAGTT | 59.364 | 45.455 | 0.00 | 0.00 | 35.57 | 3.16 |
137 | 138 | 2.253610 | TCTACGGTCCATCCAAACAGT | 58.746 | 47.619 | 0.00 | 0.00 | 35.57 | 3.55 |
138 | 139 | 3.543680 | ATCTACGGTCCATCCAAACAG | 57.456 | 47.619 | 0.00 | 0.00 | 35.57 | 3.16 |
139 | 140 | 3.605634 | CAATCTACGGTCCATCCAAACA | 58.394 | 45.455 | 0.00 | 0.00 | 35.57 | 2.83 |
140 | 141 | 2.943033 | CCAATCTACGGTCCATCCAAAC | 59.057 | 50.000 | 0.00 | 0.00 | 35.57 | 2.93 |
141 | 142 | 2.841266 | TCCAATCTACGGTCCATCCAAA | 59.159 | 45.455 | 0.00 | 0.00 | 35.57 | 3.28 |
142 | 143 | 2.473070 | TCCAATCTACGGTCCATCCAA | 58.527 | 47.619 | 0.00 | 0.00 | 35.57 | 3.53 |
143 | 144 | 2.168458 | TCCAATCTACGGTCCATCCA | 57.832 | 50.000 | 0.00 | 0.00 | 35.57 | 3.41 |
144 | 145 | 3.403038 | CATTCCAATCTACGGTCCATCC | 58.597 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
145 | 146 | 2.808543 | GCATTCCAATCTACGGTCCATC | 59.191 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
146 | 147 | 2.172505 | TGCATTCCAATCTACGGTCCAT | 59.827 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
147 | 148 | 1.557371 | TGCATTCCAATCTACGGTCCA | 59.443 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
148 | 149 | 2.325583 | TGCATTCCAATCTACGGTCC | 57.674 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
149 | 150 | 4.900635 | AAATGCATTCCAATCTACGGTC | 57.099 | 40.909 | 13.38 | 0.00 | 0.00 | 4.79 |
150 | 151 | 4.949856 | AGAAAATGCATTCCAATCTACGGT | 59.050 | 37.500 | 13.38 | 0.00 | 0.00 | 4.83 |
151 | 152 | 5.505173 | AGAAAATGCATTCCAATCTACGG | 57.495 | 39.130 | 13.38 | 0.00 | 0.00 | 4.02 |
152 | 153 | 9.173939 | GATAAAGAAAATGCATTCCAATCTACG | 57.826 | 33.333 | 13.38 | 0.00 | 0.00 | 3.51 |
155 | 156 | 7.703621 | CGTGATAAAGAAAATGCATTCCAATCT | 59.296 | 33.333 | 13.38 | 11.13 | 0.00 | 2.40 |
156 | 157 | 7.043192 | CCGTGATAAAGAAAATGCATTCCAATC | 60.043 | 37.037 | 13.38 | 9.08 | 0.00 | 2.67 |
157 | 158 | 6.757947 | CCGTGATAAAGAAAATGCATTCCAAT | 59.242 | 34.615 | 13.38 | 0.00 | 0.00 | 3.16 |
158 | 159 | 6.071672 | TCCGTGATAAAGAAAATGCATTCCAA | 60.072 | 34.615 | 13.38 | 0.00 | 0.00 | 3.53 |
159 | 160 | 5.417266 | TCCGTGATAAAGAAAATGCATTCCA | 59.583 | 36.000 | 13.38 | 0.00 | 0.00 | 3.53 |
160 | 161 | 5.890334 | TCCGTGATAAAGAAAATGCATTCC | 58.110 | 37.500 | 13.38 | 7.99 | 0.00 | 3.01 |
161 | 162 | 6.074676 | GCATCCGTGATAAAGAAAATGCATTC | 60.075 | 38.462 | 13.38 | 1.61 | 38.44 | 2.67 |
162 | 163 | 5.750067 | GCATCCGTGATAAAGAAAATGCATT | 59.250 | 36.000 | 5.99 | 5.99 | 38.44 | 3.56 |
163 | 164 | 5.284079 | GCATCCGTGATAAAGAAAATGCAT | 58.716 | 37.500 | 0.00 | 0.00 | 38.44 | 3.96 |
164 | 165 | 4.439974 | GGCATCCGTGATAAAGAAAATGCA | 60.440 | 41.667 | 0.00 | 0.00 | 39.91 | 3.96 |
165 | 166 | 4.044426 | GGCATCCGTGATAAAGAAAATGC | 58.956 | 43.478 | 0.00 | 0.00 | 37.98 | 3.56 |
166 | 167 | 5.036737 | GTGGCATCCGTGATAAAGAAAATG | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
167 | 168 | 4.201910 | CGTGGCATCCGTGATAAAGAAAAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
168 | 169 | 3.126171 | CGTGGCATCCGTGATAAAGAAAA | 59.874 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
169 | 170 | 2.675844 | CGTGGCATCCGTGATAAAGAAA | 59.324 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
170 | 171 | 2.276201 | CGTGGCATCCGTGATAAAGAA | 58.724 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
171 | 172 | 1.206132 | ACGTGGCATCCGTGATAAAGA | 59.794 | 47.619 | 2.09 | 0.00 | 37.12 | 2.52 |
172 | 173 | 1.651987 | ACGTGGCATCCGTGATAAAG | 58.348 | 50.000 | 2.09 | 0.00 | 37.12 | 1.85 |
173 | 174 | 2.963548 | TACGTGGCATCCGTGATAAA | 57.036 | 45.000 | 12.72 | 0.00 | 39.22 | 1.40 |
174 | 175 | 3.462483 | AATACGTGGCATCCGTGATAA | 57.538 | 42.857 | 12.72 | 0.00 | 39.22 | 1.75 |
175 | 176 | 3.181474 | TGAAATACGTGGCATCCGTGATA | 60.181 | 43.478 | 12.72 | 0.00 | 39.22 | 2.15 |
176 | 177 | 2.210116 | GAAATACGTGGCATCCGTGAT | 58.790 | 47.619 | 12.72 | 0.00 | 39.22 | 3.06 |
177 | 178 | 1.066787 | TGAAATACGTGGCATCCGTGA | 60.067 | 47.619 | 12.72 | 0.00 | 39.22 | 4.35 |
178 | 179 | 1.364721 | TGAAATACGTGGCATCCGTG | 58.635 | 50.000 | 12.72 | 0.00 | 39.22 | 4.94 |
179 | 180 | 2.325583 | ATGAAATACGTGGCATCCGT | 57.674 | 45.000 | 8.25 | 8.25 | 42.06 | 4.69 |
180 | 181 | 3.312421 | AGAAATGAAATACGTGGCATCCG | 59.688 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
181 | 182 | 4.900635 | AGAAATGAAATACGTGGCATCC | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
182 | 183 | 5.739161 | GTGAAGAAATGAAATACGTGGCATC | 59.261 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
183 | 184 | 5.182950 | TGTGAAGAAATGAAATACGTGGCAT | 59.817 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
184 | 185 | 4.517075 | TGTGAAGAAATGAAATACGTGGCA | 59.483 | 37.500 | 0.00 | 0.00 | 0.00 | 4.92 |
185 | 186 | 5.041951 | TGTGAAGAAATGAAATACGTGGC | 57.958 | 39.130 | 0.00 | 0.00 | 0.00 | 5.01 |
186 | 187 | 7.647715 | AGTTTTGTGAAGAAATGAAATACGTGG | 59.352 | 33.333 | 0.00 | 0.00 | 0.00 | 4.94 |
187 | 188 | 8.560576 | AGTTTTGTGAAGAAATGAAATACGTG | 57.439 | 30.769 | 0.00 | 0.00 | 0.00 | 4.49 |
196 | 197 | 7.908082 | TCTCGTGTTTAGTTTTGTGAAGAAATG | 59.092 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
207 | 208 | 7.384387 | GTCCATTCTACTCTCGTGTTTAGTTTT | 59.616 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
218 | 219 | 2.099921 | CTGGGTGTCCATTCTACTCTCG | 59.900 | 54.545 | 0.00 | 0.00 | 43.11 | 4.04 |
303 | 304 | 9.628500 | ACTTATTTCAAAACAGAGGAAGTACTT | 57.372 | 29.630 | 8.13 | 8.13 | 0.00 | 2.24 |
304 | 305 | 9.057089 | CACTTATTTCAAAACAGAGGAAGTACT | 57.943 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
305 | 306 | 8.837389 | ACACTTATTTCAAAACAGAGGAAGTAC | 58.163 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
306 | 307 | 8.974060 | ACACTTATTTCAAAACAGAGGAAGTA | 57.026 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
307 | 308 | 7.775561 | AGACACTTATTTCAAAACAGAGGAAGT | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
308 | 309 | 8.159344 | AGACACTTATTTCAAAACAGAGGAAG | 57.841 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
309 | 310 | 8.519799 | AAGACACTTATTTCAAAACAGAGGAA | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
310 | 311 | 8.519799 | AAAGACACTTATTTCAAAACAGAGGA | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 3.71 |
360 | 361 | 8.765517 | GCCAAGGCCCTTATATAATACTACTAA | 58.234 | 37.037 | 0.00 | 0.00 | 34.56 | 2.24 |
361 | 362 | 7.902401 | TGCCAAGGCCCTTATATAATACTACTA | 59.098 | 37.037 | 8.89 | 0.00 | 41.09 | 1.82 |
362 | 363 | 6.733807 | TGCCAAGGCCCTTATATAATACTACT | 59.266 | 38.462 | 8.89 | 0.00 | 41.09 | 2.57 |
363 | 364 | 6.822170 | GTGCCAAGGCCCTTATATAATACTAC | 59.178 | 42.308 | 8.89 | 0.00 | 41.09 | 2.73 |
364 | 365 | 6.069847 | GGTGCCAAGGCCCTTATATAATACTA | 60.070 | 42.308 | 8.89 | 0.00 | 41.09 | 1.82 |
644 | 706 | 4.440112 | GCTCGGGCTTTGCATTAAACTAAT | 60.440 | 41.667 | 0.00 | 0.00 | 35.22 | 1.73 |
773 | 4440 | 2.435805 | TCCTCCTATCTTGTCATGGCAC | 59.564 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
924 | 5099 | 0.550914 | AGAGAGAGAGGCACGGAGAT | 59.449 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
935 | 5110 | 1.472552 | CGAAGGCGAGAGAGAGAGAGA | 60.473 | 57.143 | 0.00 | 0.00 | 40.82 | 3.10 |
936 | 5111 | 0.937304 | CGAAGGCGAGAGAGAGAGAG | 59.063 | 60.000 | 0.00 | 0.00 | 40.82 | 3.20 |
937 | 5112 | 0.250793 | ACGAAGGCGAGAGAGAGAGA | 59.749 | 55.000 | 0.00 | 0.00 | 41.64 | 3.10 |
1096 | 5285 | 2.180276 | CGGAAGAGAGAAGGGGAAAGA | 58.820 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
1099 | 5291 | 1.265454 | GCCGGAAGAGAGAAGGGGAA | 61.265 | 60.000 | 5.05 | 0.00 | 0.00 | 3.97 |
1105 | 5297 | 2.660064 | GGCAGGCCGGAAGAGAGAA | 61.660 | 63.158 | 5.05 | 0.00 | 0.00 | 2.87 |
1188 | 5382 | 2.573869 | CAGATCCACCGACACGCT | 59.426 | 61.111 | 0.00 | 0.00 | 0.00 | 5.07 |
1192 | 5386 | 2.662596 | GCACCAGATCCACCGACA | 59.337 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
1217 | 5418 | 1.227263 | CGCAACCTAGATCCACCGG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
1325 | 5559 | 0.035820 | GCCACCATTAACGGACAGGA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1420 | 5662 | 3.828023 | GGTTGTGGGTGTGGGGGT | 61.828 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
1421 | 5663 | 3.826822 | TGGTTGTGGGTGTGGGGG | 61.827 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
1422 | 5664 | 2.520741 | GTGGTTGTGGGTGTGGGG | 60.521 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
1466 | 5756 | 3.087031 | CAGATAATCCCCATGCCATGAC | 58.913 | 50.000 | 6.18 | 0.00 | 0.00 | 3.06 |
1472 | 5762 | 3.228188 | TGGAACAGATAATCCCCATGC | 57.772 | 47.619 | 0.00 | 0.00 | 34.68 | 4.06 |
1656 | 5967 | 3.876274 | TTACACAGCTTGCTAGGAGAG | 57.124 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
1793 | 6121 | 0.387239 | GGCAACAAAGACATCACCGC | 60.387 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2432 | 6821 | 4.464947 | GATTTCCCCCGAGATCTGAAAAT | 58.535 | 43.478 | 0.00 | 0.00 | 29.05 | 1.82 |
2457 | 6846 | 1.958205 | GCGATCAGGGGAAGCATCG | 60.958 | 63.158 | 0.00 | 0.00 | 40.89 | 3.84 |
2484 | 6873 | 2.334946 | GCTTGATGTTGGGCTGCGA | 61.335 | 57.895 | 0.00 | 0.00 | 0.00 | 5.10 |
2824 | 7213 | 8.200792 | AGAATAGTCACTGATTACAATGGAGAC | 58.799 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
3002 | 7397 | 2.621998 | GCACTATACGGCTCAGAGGTAA | 59.378 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3109 | 7504 | 1.284657 | CATCACGCACTGGATGAGTC | 58.715 | 55.000 | 0.00 | 0.00 | 42.73 | 3.36 |
3281 | 7678 | 6.709281 | TGTTATGGTGCCAAAAATCATGAAT | 58.291 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3522 | 7922 | 3.367025 | GCGACTCAAACGTTAACATAGCT | 59.633 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
3710 | 8110 | 4.760530 | AGAGCAATCTAAGCATGTGGTA | 57.239 | 40.909 | 0.00 | 0.00 | 0.00 | 3.25 |
4483 | 8894 | 5.858381 | AGCATGTAAGAGACAAGAAAGTGA | 58.142 | 37.500 | 0.00 | 0.00 | 42.78 | 3.41 |
4853 | 9325 | 5.072741 | TCAGAATCTCAAGAACCAAAAGGG | 58.927 | 41.667 | 0.00 | 0.00 | 44.81 | 3.95 |
4917 | 9393 | 4.455606 | GACCTTTCATCCTCATAACCTGG | 58.544 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
5174 | 9651 | 7.645058 | AAAGAAAATCTCACTTCCAGTTTCA | 57.355 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
5304 | 9781 | 1.744320 | AACCCTTGAAACAAGGCCGC | 61.744 | 55.000 | 20.90 | 0.00 | 36.10 | 6.53 |
5517 | 9994 | 1.761784 | AGCAGACAGATAGCAGGAAGG | 59.238 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
5535 | 10012 | 5.812127 | GGGAATGATAAATTTGTTGGTGAGC | 59.188 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5661 | 10138 | 5.991328 | CAGAGCTCTGCCGAAATATAAAA | 57.009 | 39.130 | 29.79 | 0.00 | 37.15 | 1.52 |
5707 | 10184 | 5.013183 | ACACCTGATGGTAAGAGTTTTAGCT | 59.987 | 40.000 | 4.49 | 0.00 | 46.60 | 3.32 |
5716 | 10193 | 3.056821 | CACGAAGACACCTGATGGTAAGA | 60.057 | 47.826 | 0.00 | 0.00 | 46.60 | 2.10 |
6167 | 10645 | 5.243981 | CAGATTGAGAAGAAGAGCTTTCCA | 58.756 | 41.667 | 0.00 | 0.00 | 36.83 | 3.53 |
6459 | 10960 | 8.065007 | AGGGGCAATAATTTAGATAAAACTCCA | 58.935 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
6503 | 11051 | 1.080093 | CGCTGCAGGTTTCGTAGGA | 60.080 | 57.895 | 17.12 | 0.00 | 0.00 | 2.94 |
6537 | 11088 | 3.415212 | TCACAAATGGAAGAAGAGCAGG | 58.585 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
6540 | 11091 | 6.258947 | GGTAGTATCACAAATGGAAGAAGAGC | 59.741 | 42.308 | 0.00 | 0.00 | 0.00 | 4.09 |
6546 | 11102 | 6.655003 | ACAACAGGTAGTATCACAAATGGAAG | 59.345 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
6558 | 11117 | 7.996098 | ATAAGCAACAAACAACAGGTAGTAT | 57.004 | 32.000 | 0.00 | 0.00 | 0.00 | 2.12 |
6619 | 11269 | 6.016777 | ACAGCTGCCTTATAAATAGTTGATGC | 60.017 | 38.462 | 15.27 | 0.00 | 0.00 | 3.91 |
6622 | 11272 | 7.109501 | TGAACAGCTGCCTTATAAATAGTTGA | 58.890 | 34.615 | 15.27 | 0.00 | 0.00 | 3.18 |
6759 | 11476 | 7.871853 | ACATTATTAACTGAAATATCGCCACC | 58.128 | 34.615 | 0.00 | 0.00 | 0.00 | 4.61 |
7313 | 12063 | 3.585990 | GCACACACCTTGCGCACT | 61.586 | 61.111 | 11.12 | 0.00 | 33.12 | 4.40 |
7314 | 12064 | 3.408501 | TTGCACACACCTTGCGCAC | 62.409 | 57.895 | 11.12 | 0.00 | 43.03 | 5.34 |
7315 | 12065 | 3.136791 | TTGCACACACCTTGCGCA | 61.137 | 55.556 | 5.66 | 5.66 | 41.61 | 6.09 |
7316 | 12066 | 2.612219 | AAGTTGCACACACCTTGCGC | 62.612 | 55.000 | 0.00 | 0.00 | 43.34 | 6.09 |
7317 | 12067 | 0.179140 | AAAGTTGCACACACCTTGCG | 60.179 | 50.000 | 0.00 | 0.00 | 43.34 | 4.85 |
7318 | 12068 | 1.926510 | GAAAAGTTGCACACACCTTGC | 59.073 | 47.619 | 0.00 | 0.00 | 40.63 | 4.01 |
7319 | 12069 | 3.181397 | CTGAAAAGTTGCACACACCTTG | 58.819 | 45.455 | 0.00 | 0.00 | 27.64 | 3.61 |
7320 | 12070 | 2.825532 | ACTGAAAAGTTGCACACACCTT | 59.174 | 40.909 | 0.00 | 0.00 | 28.22 | 3.50 |
7321 | 12071 | 2.164219 | CACTGAAAAGTTGCACACACCT | 59.836 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
7322 | 12072 | 2.094752 | ACACTGAAAAGTTGCACACACC | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
7323 | 12073 | 3.216147 | ACACTGAAAAGTTGCACACAC | 57.784 | 42.857 | 0.00 | 0.00 | 0.00 | 3.82 |
7324 | 12074 | 3.932545 | AACACTGAAAAGTTGCACACA | 57.067 | 38.095 | 0.00 | 0.00 | 0.00 | 3.72 |
7325 | 12075 | 4.095782 | TCCTAACACTGAAAAGTTGCACAC | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
7326 | 12076 | 4.095782 | GTCCTAACACTGAAAAGTTGCACA | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
7327 | 12077 | 4.095782 | TGTCCTAACACTGAAAAGTTGCAC | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
7328 | 12078 | 4.265893 | TGTCCTAACACTGAAAAGTTGCA | 58.734 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
7329 | 12079 | 4.893424 | TGTCCTAACACTGAAAAGTTGC | 57.107 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
7330 | 12080 | 7.479980 | TCAAATGTCCTAACACTGAAAAGTTG | 58.520 | 34.615 | 0.00 | 0.00 | 38.48 | 3.16 |
7331 | 12081 | 7.201821 | CCTCAAATGTCCTAACACTGAAAAGTT | 60.202 | 37.037 | 0.00 | 0.00 | 38.48 | 2.66 |
7332 | 12082 | 6.263168 | CCTCAAATGTCCTAACACTGAAAAGT | 59.737 | 38.462 | 0.00 | 0.00 | 38.48 | 2.66 |
7333 | 12083 | 6.486657 | TCCTCAAATGTCCTAACACTGAAAAG | 59.513 | 38.462 | 0.00 | 0.00 | 38.48 | 2.27 |
7334 | 12084 | 6.361433 | TCCTCAAATGTCCTAACACTGAAAA | 58.639 | 36.000 | 0.00 | 0.00 | 38.48 | 2.29 |
7335 | 12085 | 5.935945 | TCCTCAAATGTCCTAACACTGAAA | 58.064 | 37.500 | 0.00 | 0.00 | 38.48 | 2.69 |
7336 | 12086 | 5.551233 | CTCCTCAAATGTCCTAACACTGAA | 58.449 | 41.667 | 0.00 | 0.00 | 38.48 | 3.02 |
7337 | 12087 | 4.563580 | GCTCCTCAAATGTCCTAACACTGA | 60.564 | 45.833 | 0.00 | 0.00 | 38.48 | 3.41 |
7338 | 12088 | 3.686726 | GCTCCTCAAATGTCCTAACACTG | 59.313 | 47.826 | 0.00 | 0.00 | 38.48 | 3.66 |
7339 | 12089 | 3.327757 | TGCTCCTCAAATGTCCTAACACT | 59.672 | 43.478 | 0.00 | 0.00 | 38.48 | 3.55 |
7340 | 12090 | 3.437049 | GTGCTCCTCAAATGTCCTAACAC | 59.563 | 47.826 | 0.00 | 0.00 | 38.48 | 3.32 |
7341 | 12091 | 3.674997 | GTGCTCCTCAAATGTCCTAACA | 58.325 | 45.455 | 0.00 | 0.00 | 40.38 | 2.41 |
7342 | 12092 | 2.673368 | CGTGCTCCTCAAATGTCCTAAC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
7343 | 12093 | 2.301870 | ACGTGCTCCTCAAATGTCCTAA | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
7344 | 12094 | 1.899814 | ACGTGCTCCTCAAATGTCCTA | 59.100 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
7345 | 12095 | 0.687354 | ACGTGCTCCTCAAATGTCCT | 59.313 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
7346 | 12096 | 0.798776 | CACGTGCTCCTCAAATGTCC | 59.201 | 55.000 | 0.82 | 0.00 | 0.00 | 4.02 |
7347 | 12097 | 1.795768 | TCACGTGCTCCTCAAATGTC | 58.204 | 50.000 | 11.67 | 0.00 | 0.00 | 3.06 |
7348 | 12098 | 2.254546 | TTCACGTGCTCCTCAAATGT | 57.745 | 45.000 | 11.67 | 0.00 | 0.00 | 2.71 |
7349 | 12099 | 3.624326 | TTTTCACGTGCTCCTCAAATG | 57.376 | 42.857 | 11.67 | 0.00 | 0.00 | 2.32 |
7350 | 12100 | 3.882888 | TCTTTTTCACGTGCTCCTCAAAT | 59.117 | 39.130 | 11.67 | 0.00 | 0.00 | 2.32 |
7351 | 12101 | 3.275143 | TCTTTTTCACGTGCTCCTCAAA | 58.725 | 40.909 | 11.67 | 1.89 | 0.00 | 2.69 |
7352 | 12102 | 2.912771 | TCTTTTTCACGTGCTCCTCAA | 58.087 | 42.857 | 11.67 | 0.00 | 0.00 | 3.02 |
7353 | 12103 | 2.613026 | TCTTTTTCACGTGCTCCTCA | 57.387 | 45.000 | 11.67 | 0.00 | 0.00 | 3.86 |
7354 | 12104 | 3.963383 | TTTCTTTTTCACGTGCTCCTC | 57.037 | 42.857 | 11.67 | 0.00 | 0.00 | 3.71 |
7355 | 12105 | 4.918810 | ATTTTCTTTTTCACGTGCTCCT | 57.081 | 36.364 | 11.67 | 0.00 | 0.00 | 3.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.