Multiple sequence alignment - TraesCS1D01G117300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G117300 chr1D 100.000 2983 0 0 1 2983 113846956 113849938 0.000000e+00 5509.0
1 TraesCS1D01G117300 chr1D 85.146 377 40 9 1619 1984 113571983 113572354 3.630000e-99 372.0
2 TraesCS1D01G117300 chr1D 93.991 233 14 0 1619 1851 113598160 113598392 1.320000e-93 353.0
3 TraesCS1D01G117300 chr1D 83.459 133 16 5 1280 1409 113571424 113571553 5.220000e-23 119.0
4 TraesCS1D01G117300 chr1D 79.851 134 21 5 1280 1410 113594844 113594974 3.170000e-15 93.5
5 TraesCS1D01G117300 chr1B 94.217 1781 57 16 573 2334 173596737 173598490 0.000000e+00 2676.0
6 TraesCS1D01G117300 chr1B 89.483 561 54 4 2425 2983 666836640 666836083 0.000000e+00 704.0
7 TraesCS1D01G117300 chr1B 89.184 564 59 2 2420 2983 667646126 667646687 0.000000e+00 702.0
8 TraesCS1D01G117300 chr1B 85.263 380 40 9 1617 1985 172946738 172947112 7.810000e-101 377.0
9 TraesCS1D01G117300 chr1B 88.430 121 10 4 1 118 614581135 614581254 3.100000e-30 143.0
10 TraesCS1D01G117300 chr1B 87.302 126 11 5 1 122 120393784 120393660 4.010000e-29 139.0
11 TraesCS1D01G117300 chr1B 88.793 116 10 3 1 114 348475309 348475195 4.010000e-29 139.0
12 TraesCS1D01G117300 chr1B 82.576 132 19 3 1280 1409 172944665 172944794 2.430000e-21 113.0
13 TraesCS1D01G117300 chr1A 94.306 1405 59 11 1579 2983 121568278 121569661 0.000000e+00 2132.0
14 TraesCS1D01G117300 chr1A 94.397 928 26 10 569 1484 121567361 121568274 0.000000e+00 1402.0
15 TraesCS1D01G117300 chr1A 85.000 380 41 9 1617 1985 120378648 120379022 3.630000e-99 372.0
16 TraesCS1D01G117300 chr1A 94.850 233 12 0 1619 1851 120364829 120365061 6.080000e-97 364.0
17 TraesCS1D01G117300 chr1A 84.091 132 17 3 1280 1409 120364246 120364375 1.120000e-24 124.0
18 TraesCS1D01G117300 chr1A 83.077 130 16 5 1283 1409 120376353 120376479 2.430000e-21 113.0
19 TraesCS1D01G117300 chr3D 90.357 560 50 2 2424 2983 581095638 581096193 0.000000e+00 732.0
20 TraesCS1D01G117300 chr3D 93.064 173 12 0 1618 1790 90255923 90255751 1.370000e-63 254.0
21 TraesCS1D01G117300 chr5D 89.894 564 51 5 2423 2983 457669365 457668805 0.000000e+00 721.0
22 TraesCS1D01G117300 chr5D 89.483 561 54 4 2425 2983 61485456 61484899 0.000000e+00 704.0
23 TraesCS1D01G117300 chr5D 89.184 564 55 6 2422 2983 535902202 535901643 0.000000e+00 699.0
24 TraesCS1D01G117300 chr5B 89.502 562 54 4 2424 2983 311547247 311547805 0.000000e+00 706.0
25 TraesCS1D01G117300 chr4A 89.502 562 54 4 2424 2983 598588954 598589512 0.000000e+00 706.0
26 TraesCS1D01G117300 chr5A 85.714 350 40 8 225 564 162361549 162361898 7.860000e-96 361.0
27 TraesCS1D01G117300 chr5A 85.429 350 39 9 225 564 162298975 162299322 1.320000e-93 353.0
28 TraesCS1D01G117300 chr4B 87.859 313 30 6 266 570 91996792 91997104 7.860000e-96 361.0
29 TraesCS1D01G117300 chr4B 91.304 115 7 3 1 114 639439082 639438970 1.430000e-33 154.0
30 TraesCS1D01G117300 chr3B 93.064 173 12 0 1618 1790 139505438 139505266 1.370000e-63 254.0
31 TraesCS1D01G117300 chr2A 92.174 115 9 0 1 115 418840242 418840128 2.380000e-36 163.0
32 TraesCS1D01G117300 chr2D 92.174 115 8 1 1 114 47005616 47005730 8.560000e-36 161.0
33 TraesCS1D01G117300 chr7A 88.430 121 10 4 1 118 84754859 84754740 3.100000e-30 143.0
34 TraesCS1D01G117300 chr7A 88.889 117 10 3 1 115 220122167 220122052 1.110000e-29 141.0
35 TraesCS1D01G117300 chrUn 88.793 116 10 3 1 114 286006291 286006177 4.010000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G117300 chr1D 113846956 113849938 2982 False 5509.00 5509 100.0000 1 2983 1 chr1D.!!$F1 2982
1 TraesCS1D01G117300 chr1D 113571424 113572354 930 False 245.50 372 84.3025 1280 1984 2 chr1D.!!$F2 704
2 TraesCS1D01G117300 chr1D 113594844 113598392 3548 False 223.25 353 86.9210 1280 1851 2 chr1D.!!$F3 571
3 TraesCS1D01G117300 chr1B 173596737 173598490 1753 False 2676.00 2676 94.2170 573 2334 1 chr1B.!!$F1 1761
4 TraesCS1D01G117300 chr1B 666836083 666836640 557 True 704.00 704 89.4830 2425 2983 1 chr1B.!!$R3 558
5 TraesCS1D01G117300 chr1B 667646126 667646687 561 False 702.00 702 89.1840 2420 2983 1 chr1B.!!$F3 563
6 TraesCS1D01G117300 chr1B 172944665 172947112 2447 False 245.00 377 83.9195 1280 1985 2 chr1B.!!$F4 705
7 TraesCS1D01G117300 chr1A 121567361 121569661 2300 False 1767.00 2132 94.3515 569 2983 2 chr1A.!!$F3 2414
8 TraesCS1D01G117300 chr1A 120364246 120365061 815 False 244.00 364 89.4705 1280 1851 2 chr1A.!!$F1 571
9 TraesCS1D01G117300 chr1A 120376353 120379022 2669 False 242.50 372 84.0385 1283 1985 2 chr1A.!!$F2 702
10 TraesCS1D01G117300 chr3D 581095638 581096193 555 False 732.00 732 90.3570 2424 2983 1 chr3D.!!$F1 559
11 TraesCS1D01G117300 chr5D 457668805 457669365 560 True 721.00 721 89.8940 2423 2983 1 chr5D.!!$R2 560
12 TraesCS1D01G117300 chr5D 61484899 61485456 557 True 704.00 704 89.4830 2425 2983 1 chr5D.!!$R1 558
13 TraesCS1D01G117300 chr5D 535901643 535902202 559 True 699.00 699 89.1840 2422 2983 1 chr5D.!!$R3 561
14 TraesCS1D01G117300 chr5B 311547247 311547805 558 False 706.00 706 89.5020 2424 2983 1 chr5B.!!$F1 559
15 TraesCS1D01G117300 chr4A 598588954 598589512 558 False 706.00 706 89.5020 2424 2983 1 chr4A.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 551 0.098025 TAGTTTAGCCGCGCAAATGC 59.902 50.0 8.75 3.9 37.78 3.56 F
1347 1360 0.592637 TTGCAATGTGAAGAGCCACG 59.407 50.0 0.00 0.0 39.80 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 5169 0.452585 CATCCATGCATGCGTGACAA 59.547 50.0 35.91 22.46 35.09 3.18 R
2621 6337 0.797249 CCTTAGCACGACGACTTCCG 60.797 60.0 0.00 0.00 45.44 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.658427 TGGTGGTGGGATGTGAGA 57.342 55.556 0.00 0.00 0.00 3.27
18 19 2.066340 TGGTGGTGGGATGTGAGAC 58.934 57.895 0.00 0.00 0.00 3.36
19 20 1.079127 GGTGGTGGGATGTGAGACG 60.079 63.158 0.00 0.00 0.00 4.18
20 21 1.541310 GGTGGTGGGATGTGAGACGA 61.541 60.000 0.00 0.00 0.00 4.20
21 22 0.320374 GTGGTGGGATGTGAGACGAA 59.680 55.000 0.00 0.00 0.00 3.85
22 23 0.608130 TGGTGGGATGTGAGACGAAG 59.392 55.000 0.00 0.00 0.00 3.79
23 24 0.895530 GGTGGGATGTGAGACGAAGA 59.104 55.000 0.00 0.00 0.00 2.87
24 25 1.482593 GGTGGGATGTGAGACGAAGAT 59.517 52.381 0.00 0.00 0.00 2.40
25 26 2.693591 GGTGGGATGTGAGACGAAGATA 59.306 50.000 0.00 0.00 0.00 1.98
26 27 3.132289 GGTGGGATGTGAGACGAAGATAA 59.868 47.826 0.00 0.00 0.00 1.75
27 28 4.382685 GGTGGGATGTGAGACGAAGATAAA 60.383 45.833 0.00 0.00 0.00 1.40
28 29 4.567159 GTGGGATGTGAGACGAAGATAAAC 59.433 45.833 0.00 0.00 0.00 2.01
29 30 4.120589 GGGATGTGAGACGAAGATAAACC 58.879 47.826 0.00 0.00 0.00 3.27
30 31 3.797256 GGATGTGAGACGAAGATAAACCG 59.203 47.826 0.00 0.00 0.00 4.44
31 32 3.226346 TGTGAGACGAAGATAAACCGG 57.774 47.619 0.00 0.00 0.00 5.28
32 33 2.821378 TGTGAGACGAAGATAAACCGGA 59.179 45.455 9.46 0.00 0.00 5.14
33 34 3.177487 GTGAGACGAAGATAAACCGGAC 58.823 50.000 9.46 0.00 0.00 4.79
34 35 2.159476 TGAGACGAAGATAAACCGGACG 60.159 50.000 9.46 3.12 0.00 4.79
35 36 2.086869 AGACGAAGATAAACCGGACGA 58.913 47.619 9.46 0.00 0.00 4.20
36 37 2.489329 AGACGAAGATAAACCGGACGAA 59.511 45.455 9.46 0.00 0.00 3.85
37 38 3.057315 AGACGAAGATAAACCGGACGAAA 60.057 43.478 9.46 0.00 0.00 3.46
38 39 3.652274 ACGAAGATAAACCGGACGAAAA 58.348 40.909 9.46 0.00 0.00 2.29
39 40 4.248058 ACGAAGATAAACCGGACGAAAAT 58.752 39.130 9.46 0.00 0.00 1.82
40 41 5.410067 ACGAAGATAAACCGGACGAAAATA 58.590 37.500 9.46 0.00 0.00 1.40
41 42 5.868801 ACGAAGATAAACCGGACGAAAATAA 59.131 36.000 9.46 0.00 0.00 1.40
42 43 6.368516 ACGAAGATAAACCGGACGAAAATAAA 59.631 34.615 9.46 0.00 0.00 1.40
43 44 6.679919 CGAAGATAAACCGGACGAAAATAAAC 59.320 38.462 9.46 0.00 0.00 2.01
44 45 6.426980 AGATAAACCGGACGAAAATAAACC 57.573 37.500 9.46 0.00 0.00 3.27
45 46 5.939296 AGATAAACCGGACGAAAATAAACCA 59.061 36.000 9.46 0.00 0.00 3.67
46 47 4.492791 AAACCGGACGAAAATAAACCAG 57.507 40.909 9.46 0.00 0.00 4.00
47 48 3.405823 ACCGGACGAAAATAAACCAGA 57.594 42.857 9.46 0.00 0.00 3.86
48 49 3.069289 ACCGGACGAAAATAAACCAGAC 58.931 45.455 9.46 0.00 0.00 3.51
49 50 2.093152 CCGGACGAAAATAAACCAGACG 59.907 50.000 0.00 0.00 0.00 4.18
50 51 2.988493 CGGACGAAAATAAACCAGACGA 59.012 45.455 0.00 0.00 0.00 4.20
51 52 3.429543 CGGACGAAAATAAACCAGACGAA 59.570 43.478 0.00 0.00 0.00 3.85
52 53 4.084433 CGGACGAAAATAAACCAGACGAAA 60.084 41.667 0.00 0.00 0.00 3.46
53 54 5.390145 CGGACGAAAATAAACCAGACGAAAT 60.390 40.000 0.00 0.00 0.00 2.17
54 55 6.183360 CGGACGAAAATAAACCAGACGAAATA 60.183 38.462 0.00 0.00 0.00 1.40
55 56 7.464977 CGGACGAAAATAAACCAGACGAAATAT 60.465 37.037 0.00 0.00 0.00 1.28
56 57 8.819974 GGACGAAAATAAACCAGACGAAATATA 58.180 33.333 0.00 0.00 0.00 0.86
58 59 9.977762 ACGAAAATAAACCAGACGAAATATAAC 57.022 29.630 0.00 0.00 0.00 1.89
59 60 9.429600 CGAAAATAAACCAGACGAAATATAACC 57.570 33.333 0.00 0.00 0.00 2.85
60 61 9.429600 GAAAATAAACCAGACGAAATATAACCG 57.570 33.333 0.00 0.00 0.00 4.44
61 62 8.721019 AAATAAACCAGACGAAATATAACCGA 57.279 30.769 0.00 0.00 0.00 4.69
62 63 8.721019 AATAAACCAGACGAAATATAACCGAA 57.279 30.769 0.00 0.00 0.00 4.30
63 64 6.413018 AAACCAGACGAAATATAACCGAAC 57.587 37.500 0.00 0.00 0.00 3.95
64 65 4.107622 ACCAGACGAAATATAACCGAACG 58.892 43.478 0.00 0.00 0.00 3.95
65 66 4.142403 ACCAGACGAAATATAACCGAACGA 60.142 41.667 0.00 0.00 0.00 3.85
66 67 4.799949 CCAGACGAAATATAACCGAACGAA 59.200 41.667 0.00 0.00 0.00 3.85
67 68 5.289193 CCAGACGAAATATAACCGAACGAAA 59.711 40.000 0.00 0.00 0.00 3.46
68 69 6.183360 CCAGACGAAATATAACCGAACGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
69 70 7.396419 CAGACGAAATATAACCGAACGAAAAT 58.604 34.615 0.00 0.00 0.00 1.82
70 71 8.533965 CAGACGAAATATAACCGAACGAAAATA 58.466 33.333 0.00 0.00 0.00 1.40
71 72 9.086336 AGACGAAATATAACCGAACGAAAATAA 57.914 29.630 0.00 0.00 0.00 1.40
72 73 9.687717 GACGAAATATAACCGAACGAAAATAAA 57.312 29.630 0.00 0.00 0.00 1.40
73 74 9.476761 ACGAAATATAACCGAACGAAAATAAAC 57.523 29.630 0.00 0.00 0.00 2.01
74 75 8.936936 CGAAATATAACCGAACGAAAATAAACC 58.063 33.333 0.00 0.00 0.00 3.27
75 76 8.825064 AAATATAACCGAACGAAAATAAACCG 57.175 30.769 0.00 0.00 0.00 4.44
76 77 5.861222 ATAACCGAACGAAAATAAACCGT 57.139 34.783 0.00 0.00 38.24 4.83
77 78 3.524763 ACCGAACGAAAATAAACCGTG 57.475 42.857 0.00 0.00 36.58 4.94
78 79 2.223845 ACCGAACGAAAATAAACCGTGG 59.776 45.455 0.00 0.00 36.58 4.94
79 80 2.223845 CCGAACGAAAATAAACCGTGGT 59.776 45.455 0.00 0.00 36.58 4.16
80 81 3.431572 CCGAACGAAAATAAACCGTGGTA 59.568 43.478 0.00 0.00 36.58 3.25
81 82 4.385379 CGAACGAAAATAAACCGTGGTAC 58.615 43.478 0.00 0.00 36.58 3.34
82 83 4.150451 CGAACGAAAATAAACCGTGGTACT 59.850 41.667 0.00 0.00 36.58 2.73
83 84 5.344665 CGAACGAAAATAAACCGTGGTACTA 59.655 40.000 0.00 0.00 36.58 1.82
84 85 6.034898 CGAACGAAAATAAACCGTGGTACTAT 59.965 38.462 0.00 0.00 36.58 2.12
85 86 7.411804 CGAACGAAAATAAACCGTGGTACTATT 60.412 37.037 0.00 0.00 36.58 1.73
86 87 7.294676 ACGAAAATAAACCGTGGTACTATTC 57.705 36.000 0.00 0.00 35.02 1.75
87 88 6.873076 ACGAAAATAAACCGTGGTACTATTCA 59.127 34.615 0.00 0.00 35.02 2.57
88 89 7.387397 ACGAAAATAAACCGTGGTACTATTCAA 59.613 33.333 0.00 0.00 35.02 2.69
89 90 7.689400 CGAAAATAAACCGTGGTACTATTCAAC 59.311 37.037 0.00 0.00 0.00 3.18
90 91 6.990341 AATAAACCGTGGTACTATTCAACC 57.010 37.500 0.00 0.00 36.24 3.77
91 92 4.354893 AAACCGTGGTACTATTCAACCA 57.645 40.909 0.00 0.00 43.47 3.67
92 93 4.354893 AACCGTGGTACTATTCAACCAA 57.645 40.909 0.00 0.00 46.97 3.67
93 94 3.667360 ACCGTGGTACTATTCAACCAAC 58.333 45.455 0.00 0.00 46.97 3.77
94 95 3.325716 ACCGTGGTACTATTCAACCAACT 59.674 43.478 0.00 0.00 46.97 3.16
95 96 4.527816 ACCGTGGTACTATTCAACCAACTA 59.472 41.667 0.00 0.00 46.97 2.24
96 97 5.011943 ACCGTGGTACTATTCAACCAACTAA 59.988 40.000 0.00 0.00 46.97 2.24
97 98 6.110707 CCGTGGTACTATTCAACCAACTAAT 58.889 40.000 0.00 0.00 46.97 1.73
98 99 7.093377 ACCGTGGTACTATTCAACCAACTAATA 60.093 37.037 0.00 0.00 46.97 0.98
99 100 7.223387 CCGTGGTACTATTCAACCAACTAATAC 59.777 40.741 0.00 0.00 46.97 1.89
100 101 7.760794 CGTGGTACTATTCAACCAACTAATACA 59.239 37.037 0.00 0.00 46.97 2.29
101 102 9.609346 GTGGTACTATTCAACCAACTAATACAT 57.391 33.333 0.00 0.00 46.97 2.29
111 112 9.483489 TCAACCAACTAATACATTAGGAGTAGA 57.517 33.333 12.42 2.59 43.07 2.59
112 113 9.751542 CAACCAACTAATACATTAGGAGTAGAG 57.248 37.037 12.42 0.00 43.07 2.43
113 114 9.710818 AACCAACTAATACATTAGGAGTAGAGA 57.289 33.333 12.42 0.00 43.07 3.10
114 115 9.710818 ACCAACTAATACATTAGGAGTAGAGAA 57.289 33.333 12.42 0.00 43.07 2.87
127 128 7.881912 AGGAGTAGAGAAGATGATAGTAGGA 57.118 40.000 0.00 0.00 0.00 2.94
128 129 7.686434 AGGAGTAGAGAAGATGATAGTAGGAC 58.314 42.308 0.00 0.00 0.00 3.85
129 130 6.592607 GGAGTAGAGAAGATGATAGTAGGACG 59.407 46.154 0.00 0.00 0.00 4.79
130 131 7.069877 AGTAGAGAAGATGATAGTAGGACGT 57.930 40.000 0.00 0.00 0.00 4.34
131 132 6.932400 AGTAGAGAAGATGATAGTAGGACGTG 59.068 42.308 0.00 0.00 0.00 4.49
132 133 5.931294 AGAGAAGATGATAGTAGGACGTGA 58.069 41.667 0.00 0.00 0.00 4.35
133 134 6.358178 AGAGAAGATGATAGTAGGACGTGAA 58.642 40.000 0.00 0.00 0.00 3.18
134 135 6.485313 AGAGAAGATGATAGTAGGACGTGAAG 59.515 42.308 0.00 0.00 0.00 3.02
135 136 6.123651 AGAAGATGATAGTAGGACGTGAAGT 58.876 40.000 0.00 0.00 0.00 3.01
152 153 7.881142 ACGTGAAGTCATAATTTTCAAATGGA 58.119 30.769 0.00 0.00 33.10 3.41
153 154 8.522830 ACGTGAAGTCATAATTTTCAAATGGAT 58.477 29.630 0.00 0.00 33.10 3.41
154 155 9.013490 CGTGAAGTCATAATTTTCAAATGGATC 57.987 33.333 0.00 0.00 33.10 3.36
155 156 9.859427 GTGAAGTCATAATTTTCAAATGGATCA 57.141 29.630 0.00 0.00 33.10 2.92
169 170 9.850198 TTCAAATGGATCAAGTATGATATGTCA 57.150 29.630 0.00 0.00 46.30 3.58
170 171 9.850198 TCAAATGGATCAAGTATGATATGTCAA 57.150 29.630 0.00 0.00 46.30 3.18
191 192 9.897744 TGTCAATAATGAAGAAAACATGACTTC 57.102 29.630 0.00 9.31 37.30 3.01
196 197 5.811399 TGAAGAAAACATGACTTCAACGT 57.189 34.783 18.53 0.00 44.16 3.99
197 198 5.568482 TGAAGAAAACATGACTTCAACGTG 58.432 37.500 18.53 0.00 44.16 4.49
198 199 4.552166 AGAAAACATGACTTCAACGTGG 57.448 40.909 0.00 0.00 0.00 4.94
199 200 2.774439 AAACATGACTTCAACGTGGC 57.226 45.000 0.00 0.00 0.00 5.01
200 201 0.586319 AACATGACTTCAACGTGGCG 59.414 50.000 0.00 0.00 0.00 5.69
201 202 0.249699 ACATGACTTCAACGTGGCGA 60.250 50.000 0.00 0.00 0.00 5.54
202 203 0.865111 CATGACTTCAACGTGGCGAA 59.135 50.000 0.00 0.00 0.00 4.70
203 204 1.262950 CATGACTTCAACGTGGCGAAA 59.737 47.619 0.00 0.00 0.00 3.46
204 205 1.588674 TGACTTCAACGTGGCGAAAT 58.411 45.000 0.00 0.00 0.00 2.17
205 206 1.944024 TGACTTCAACGTGGCGAAATT 59.056 42.857 0.00 0.00 0.00 1.82
206 207 3.132160 TGACTTCAACGTGGCGAAATTA 58.868 40.909 0.00 0.00 0.00 1.40
207 208 3.560481 TGACTTCAACGTGGCGAAATTAA 59.440 39.130 0.00 0.00 0.00 1.40
208 209 4.035324 TGACTTCAACGTGGCGAAATTAAA 59.965 37.500 0.00 0.00 0.00 1.52
209 210 4.533222 ACTTCAACGTGGCGAAATTAAAG 58.467 39.130 0.00 0.00 0.00 1.85
210 211 3.546002 TCAACGTGGCGAAATTAAAGG 57.454 42.857 0.00 0.00 0.00 3.11
211 212 2.879646 TCAACGTGGCGAAATTAAAGGT 59.120 40.909 0.00 0.00 0.00 3.50
212 213 3.058777 TCAACGTGGCGAAATTAAAGGTC 60.059 43.478 0.00 0.00 0.00 3.85
213 214 1.808343 ACGTGGCGAAATTAAAGGTCC 59.192 47.619 0.00 0.00 0.00 4.46
214 215 1.807742 CGTGGCGAAATTAAAGGTCCA 59.192 47.619 0.00 0.00 0.00 4.02
215 216 2.226912 CGTGGCGAAATTAAAGGTCCAA 59.773 45.455 0.00 0.00 0.00 3.53
216 217 3.304794 CGTGGCGAAATTAAAGGTCCAAA 60.305 43.478 0.00 0.00 0.00 3.28
217 218 4.623002 GTGGCGAAATTAAAGGTCCAAAA 58.377 39.130 0.00 0.00 0.00 2.44
218 219 5.234752 GTGGCGAAATTAAAGGTCCAAAAT 58.765 37.500 0.00 0.00 0.00 1.82
219 220 5.699001 GTGGCGAAATTAAAGGTCCAAAATT 59.301 36.000 0.00 0.00 0.00 1.82
220 221 6.203915 GTGGCGAAATTAAAGGTCCAAAATTT 59.796 34.615 7.98 7.98 34.98 1.82
221 222 6.425417 TGGCGAAATTAAAGGTCCAAAATTTC 59.575 34.615 17.86 17.86 41.57 2.17
222 223 6.649141 GGCGAAATTAAAGGTCCAAAATTTCT 59.351 34.615 21.63 3.02 42.26 2.52
223 224 7.360017 GGCGAAATTAAAGGTCCAAAATTTCTG 60.360 37.037 21.63 17.99 42.26 3.02
224 225 7.383843 GCGAAATTAAAGGTCCAAAATTTCTGA 59.616 33.333 21.63 0.00 42.26 3.27
225 226 9.255304 CGAAATTAAAGGTCCAAAATTTCTGAA 57.745 29.630 21.63 0.00 42.26 3.02
229 230 9.725019 ATTAAAGGTCCAAAATTTCTGAAATCC 57.275 29.630 15.43 11.12 0.00 3.01
230 231 5.745312 AGGTCCAAAATTTCTGAAATCCC 57.255 39.130 15.43 9.07 0.00 3.85
231 232 5.406163 AGGTCCAAAATTTCTGAAATCCCT 58.594 37.500 15.43 10.79 0.00 4.20
232 233 6.561294 AGGTCCAAAATTTCTGAAATCCCTA 58.439 36.000 15.43 0.00 0.00 3.53
233 234 7.016296 AGGTCCAAAATTTCTGAAATCCCTAA 58.984 34.615 15.43 0.75 0.00 2.69
234 235 7.512402 AGGTCCAAAATTTCTGAAATCCCTAAA 59.488 33.333 15.43 0.00 0.00 1.85
235 236 8.154203 GGTCCAAAATTTCTGAAATCCCTAAAA 58.846 33.333 15.43 0.00 0.00 1.52
236 237 9.725019 GTCCAAAATTTCTGAAATCCCTAAAAT 57.275 29.630 15.43 0.00 0.00 1.82
267 268 6.940739 ACTGAATAAATATCGAGGGATGAGG 58.059 40.000 0.00 0.00 34.00 3.86
268 269 6.726299 ACTGAATAAATATCGAGGGATGAGGA 59.274 38.462 0.00 0.00 34.00 3.71
269 270 7.093552 ACTGAATAAATATCGAGGGATGAGGAG 60.094 40.741 0.00 0.00 34.00 3.69
270 271 6.726299 TGAATAAATATCGAGGGATGAGGAGT 59.274 38.462 0.00 0.00 34.00 3.85
271 272 4.881019 AAATATCGAGGGATGAGGAGTG 57.119 45.455 0.00 0.00 34.00 3.51
272 273 2.294449 TATCGAGGGATGAGGAGTGG 57.706 55.000 0.00 0.00 34.00 4.00
273 274 0.558220 ATCGAGGGATGAGGAGTGGA 59.442 55.000 0.00 0.00 0.00 4.02
274 275 0.335019 TCGAGGGATGAGGAGTGGAA 59.665 55.000 0.00 0.00 0.00 3.53
275 276 1.062886 TCGAGGGATGAGGAGTGGAAT 60.063 52.381 0.00 0.00 0.00 3.01
276 277 2.177016 TCGAGGGATGAGGAGTGGAATA 59.823 50.000 0.00 0.00 0.00 1.75
277 278 2.560542 CGAGGGATGAGGAGTGGAATAG 59.439 54.545 0.00 0.00 0.00 1.73
278 279 2.903135 GAGGGATGAGGAGTGGAATAGG 59.097 54.545 0.00 0.00 0.00 2.57
279 280 2.524440 AGGGATGAGGAGTGGAATAGGA 59.476 50.000 0.00 0.00 0.00 2.94
280 281 3.051032 AGGGATGAGGAGTGGAATAGGAA 60.051 47.826 0.00 0.00 0.00 3.36
281 282 3.716872 GGGATGAGGAGTGGAATAGGAAA 59.283 47.826 0.00 0.00 0.00 3.13
282 283 4.166144 GGGATGAGGAGTGGAATAGGAAAA 59.834 45.833 0.00 0.00 0.00 2.29
283 284 5.163045 GGGATGAGGAGTGGAATAGGAAAAT 60.163 44.000 0.00 0.00 0.00 1.82
284 285 6.044404 GGGATGAGGAGTGGAATAGGAAAATA 59.956 42.308 0.00 0.00 0.00 1.40
285 286 7.257199 GGGATGAGGAGTGGAATAGGAAAATAT 60.257 40.741 0.00 0.00 0.00 1.28
286 287 8.826765 GGATGAGGAGTGGAATAGGAAAATATA 58.173 37.037 0.00 0.00 0.00 0.86
287 288 9.883142 GATGAGGAGTGGAATAGGAAAATATAG 57.117 37.037 0.00 0.00 0.00 1.31
288 289 9.621239 ATGAGGAGTGGAATAGGAAAATATAGA 57.379 33.333 0.00 0.00 0.00 1.98
289 290 9.447279 TGAGGAGTGGAATAGGAAAATATAGAA 57.553 33.333 0.00 0.00 0.00 2.10
322 323 9.935241 ATGAGAGCTAATGGTGTTACATTATAG 57.065 33.333 0.00 0.00 41.14 1.31
323 324 8.367911 TGAGAGCTAATGGTGTTACATTATAGG 58.632 37.037 0.00 0.00 41.14 2.57
324 325 8.492415 AGAGCTAATGGTGTTACATTATAGGA 57.508 34.615 0.00 0.00 41.14 2.94
325 326 8.368668 AGAGCTAATGGTGTTACATTATAGGAC 58.631 37.037 0.00 0.00 41.14 3.85
326 327 8.029782 AGCTAATGGTGTTACATTATAGGACA 57.970 34.615 0.00 0.00 41.14 4.02
327 328 8.660435 AGCTAATGGTGTTACATTATAGGACAT 58.340 33.333 0.00 0.00 41.14 3.06
328 329 9.938280 GCTAATGGTGTTACATTATAGGACATA 57.062 33.333 0.00 0.00 41.14 2.29
331 332 9.555727 AATGGTGTTACATTATAGGACATACAC 57.444 33.333 0.00 0.00 39.18 2.90
332 333 7.958053 GGTGTTACATTATAGGACATACACC 57.042 40.000 0.00 0.00 44.06 4.16
334 335 8.361592 GTGTTACATTATAGGACATACACCAC 57.638 38.462 0.00 0.00 0.00 4.16
335 336 7.168637 GTGTTACATTATAGGACATACACCACG 59.831 40.741 0.00 0.00 0.00 4.94
336 337 5.209818 ACATTATAGGACATACACCACGG 57.790 43.478 0.00 0.00 0.00 4.94
337 338 4.652421 ACATTATAGGACATACACCACGGT 59.348 41.667 0.00 0.00 0.00 4.83
346 347 2.111043 CACCACGGTGCTTCTGGT 59.889 61.111 2.68 0.00 38.95 4.00
347 348 1.961277 CACCACGGTGCTTCTGGTC 60.961 63.158 2.68 0.00 36.06 4.02
348 349 2.140792 ACCACGGTGCTTCTGGTCT 61.141 57.895 1.68 0.00 32.51 3.85
349 350 1.071471 CCACGGTGCTTCTGGTCTT 59.929 57.895 1.68 0.00 0.00 3.01
350 351 0.535102 CCACGGTGCTTCTGGTCTTT 60.535 55.000 1.68 0.00 0.00 2.52
351 352 0.868406 CACGGTGCTTCTGGTCTTTC 59.132 55.000 0.00 0.00 0.00 2.62
352 353 0.468226 ACGGTGCTTCTGGTCTTTCA 59.532 50.000 0.00 0.00 0.00 2.69
353 354 1.151668 CGGTGCTTCTGGTCTTTCAG 58.848 55.000 0.00 0.00 36.17 3.02
354 355 0.877743 GGTGCTTCTGGTCTTTCAGC 59.122 55.000 0.00 0.00 34.91 4.26
355 356 0.514691 GTGCTTCTGGTCTTTCAGCG 59.485 55.000 0.00 0.00 34.91 5.18
356 357 0.106708 TGCTTCTGGTCTTTCAGCGT 59.893 50.000 0.00 0.00 34.91 5.07
357 358 0.793250 GCTTCTGGTCTTTCAGCGTC 59.207 55.000 0.00 0.00 34.91 5.19
358 359 1.873903 GCTTCTGGTCTTTCAGCGTCA 60.874 52.381 0.00 0.00 34.91 4.35
359 360 1.795286 CTTCTGGTCTTTCAGCGTCAC 59.205 52.381 0.00 0.00 34.91 3.67
360 361 0.750249 TCTGGTCTTTCAGCGTCACA 59.250 50.000 0.00 0.00 34.91 3.58
361 362 0.861837 CTGGTCTTTCAGCGTCACAC 59.138 55.000 0.00 0.00 0.00 3.82
362 363 0.176910 TGGTCTTTCAGCGTCACACA 59.823 50.000 0.00 0.00 0.00 3.72
363 364 1.202639 TGGTCTTTCAGCGTCACACAT 60.203 47.619 0.00 0.00 0.00 3.21
364 365 1.195448 GGTCTTTCAGCGTCACACATG 59.805 52.381 0.00 0.00 0.00 3.21
365 366 2.135139 GTCTTTCAGCGTCACACATGA 58.865 47.619 0.00 0.00 0.00 3.07
366 367 2.543848 GTCTTTCAGCGTCACACATGAA 59.456 45.455 0.00 0.00 36.31 2.57
367 368 2.802247 TCTTTCAGCGTCACACATGAAG 59.198 45.455 0.00 0.00 36.31 3.02
368 369 1.511850 TTCAGCGTCACACATGAAGG 58.488 50.000 0.00 0.00 36.31 3.46
369 370 0.392706 TCAGCGTCACACATGAAGGT 59.607 50.000 0.00 0.00 44.42 3.50
370 371 0.792640 CAGCGTCACACATGAAGGTC 59.207 55.000 0.00 0.00 42.16 3.85
371 372 0.681733 AGCGTCACACATGAAGGTCT 59.318 50.000 0.00 0.00 40.41 3.85
372 373 1.070758 AGCGTCACACATGAAGGTCTT 59.929 47.619 0.00 0.00 40.41 3.01
373 374 1.873591 GCGTCACACATGAAGGTCTTT 59.126 47.619 0.00 0.00 36.31 2.52
374 375 2.349817 GCGTCACACATGAAGGTCTTTG 60.350 50.000 0.00 0.00 36.31 2.77
375 376 2.349817 CGTCACACATGAAGGTCTTTGC 60.350 50.000 0.00 0.00 36.31 3.68
376 377 2.618241 GTCACACATGAAGGTCTTTGCA 59.382 45.455 0.00 0.00 36.31 4.08
377 378 3.066621 GTCACACATGAAGGTCTTTGCAA 59.933 43.478 0.00 0.00 36.31 4.08
378 379 3.890756 TCACACATGAAGGTCTTTGCAAT 59.109 39.130 0.00 0.00 0.00 3.56
379 380 5.048782 GTCACACATGAAGGTCTTTGCAATA 60.049 40.000 0.00 0.00 36.31 1.90
380 381 5.534278 TCACACATGAAGGTCTTTGCAATAA 59.466 36.000 0.00 0.00 0.00 1.40
381 382 5.630680 CACACATGAAGGTCTTTGCAATAAC 59.369 40.000 0.00 1.17 0.00 1.89
382 383 5.536161 ACACATGAAGGTCTTTGCAATAACT 59.464 36.000 0.00 0.00 0.00 2.24
383 384 6.040842 ACACATGAAGGTCTTTGCAATAACTT 59.959 34.615 11.30 11.30 0.00 2.66
384 385 7.230510 ACACATGAAGGTCTTTGCAATAACTTA 59.769 33.333 11.42 3.43 0.00 2.24
385 386 8.081633 CACATGAAGGTCTTTGCAATAACTTAA 58.918 33.333 11.42 6.19 0.00 1.85
386 387 8.806146 ACATGAAGGTCTTTGCAATAACTTAAT 58.194 29.630 11.42 7.97 0.00 1.40
387 388 9.643693 CATGAAGGTCTTTGCAATAACTTAATT 57.356 29.630 11.42 3.46 0.00 1.40
388 389 9.860898 ATGAAGGTCTTTGCAATAACTTAATTC 57.139 29.630 11.42 10.36 0.00 2.17
389 390 8.855110 TGAAGGTCTTTGCAATAACTTAATTCA 58.145 29.630 11.42 12.06 0.00 2.57
390 391 9.691362 GAAGGTCTTTGCAATAACTTAATTCAA 57.309 29.630 11.42 0.00 0.00 2.69
434 435 7.602517 CCAAAGTTTGGTAATGTTTTTGTGA 57.397 32.000 24.17 0.00 45.93 3.58
435 436 7.683746 CCAAAGTTTGGTAATGTTTTTGTGAG 58.316 34.615 24.17 0.00 45.93 3.51
436 437 7.547370 CCAAAGTTTGGTAATGTTTTTGTGAGA 59.453 33.333 24.17 0.00 45.93 3.27
437 438 9.097257 CAAAGTTTGGTAATGTTTTTGTGAGAT 57.903 29.630 7.78 0.00 0.00 2.75
438 439 8.647143 AAGTTTGGTAATGTTTTTGTGAGATG 57.353 30.769 0.00 0.00 0.00 2.90
439 440 7.781056 AGTTTGGTAATGTTTTTGTGAGATGT 58.219 30.769 0.00 0.00 0.00 3.06
440 441 8.908903 AGTTTGGTAATGTTTTTGTGAGATGTA 58.091 29.630 0.00 0.00 0.00 2.29
441 442 9.522804 GTTTGGTAATGTTTTTGTGAGATGTAA 57.477 29.630 0.00 0.00 0.00 2.41
444 445 9.689976 TGGTAATGTTTTTGTGAGATGTAAATG 57.310 29.630 0.00 0.00 0.00 2.32
445 446 9.691362 GGTAATGTTTTTGTGAGATGTAAATGT 57.309 29.630 0.00 0.00 0.00 2.71
449 450 9.677567 ATGTTTTTGTGAGATGTAAATGTGTAC 57.322 29.630 0.00 0.00 0.00 2.90
450 451 8.898761 TGTTTTTGTGAGATGTAAATGTGTACT 58.101 29.630 0.00 0.00 0.00 2.73
451 452 9.730420 GTTTTTGTGAGATGTAAATGTGTACTT 57.270 29.630 0.00 0.00 0.00 2.24
544 545 7.847166 ATAAAAATATTTAGTTTAGCCGCGC 57.153 32.000 0.00 0.00 34.62 6.86
545 546 4.886247 AAATATTTAGTTTAGCCGCGCA 57.114 36.364 8.75 0.00 0.00 6.09
546 547 4.886247 AATATTTAGTTTAGCCGCGCAA 57.114 36.364 8.75 0.00 0.00 4.85
547 548 4.886247 ATATTTAGTTTAGCCGCGCAAA 57.114 36.364 8.75 0.00 0.00 3.68
548 549 3.775661 ATTTAGTTTAGCCGCGCAAAT 57.224 38.095 8.75 0.00 0.00 2.32
549 550 2.535934 TTAGTTTAGCCGCGCAAATG 57.464 45.000 8.75 0.00 0.00 2.32
550 551 0.098025 TAGTTTAGCCGCGCAAATGC 59.902 50.000 8.75 3.90 37.78 3.56
663 664 2.063266 GTCGCTCGTGTTACATTTCCA 58.937 47.619 0.00 0.00 0.00 3.53
738 740 1.684049 CTTGTCCTCTCCGGCCTCT 60.684 63.158 0.00 0.00 0.00 3.69
923 925 3.093057 GGGCATAGATGGTAGATCGTCT 58.907 50.000 0.00 0.00 36.94 4.18
974 976 4.809193 AGTTCAGTGATAGCCTGATAGGA 58.191 43.478 0.00 0.00 37.67 2.94
977 987 2.896044 CAGTGATAGCCTGATAGGAGCA 59.104 50.000 0.00 0.00 37.67 4.26
1347 1360 0.592637 TTGCAATGTGAAGAGCCACG 59.407 50.000 0.00 0.00 39.80 4.94
1421 1702 4.641989 TCCAGGTACGTACTACTCCAATTC 59.358 45.833 24.07 4.60 0.00 2.17
1471 1753 4.336889 TGACGAGACAGGAATGAACTTT 57.663 40.909 0.00 0.00 0.00 2.66
1474 1756 3.815401 ACGAGACAGGAATGAACTTTTGG 59.185 43.478 0.00 0.00 0.00 3.28
1537 5169 3.450817 TGTATGGAGAATCACGTCCACAT 59.549 43.478 0.00 0.00 45.72 3.21
1555 5187 1.066454 CATTGTCACGCATGCATGGAT 59.934 47.619 27.34 5.49 0.00 3.41
1575 5278 1.349627 CCGCGCTATTTGCTCTGTG 59.650 57.895 5.56 0.00 40.11 3.66
1577 5280 1.297158 GCGCTATTTGCTCTGTGCG 60.297 57.895 0.00 0.00 46.63 5.34
1946 5661 2.100031 CAAGGCGATGCAGCGTGTA 61.100 57.895 26.61 0.00 38.18 2.90
2261 5976 1.134280 CAATTCTCCGACTCCAGCCAT 60.134 52.381 0.00 0.00 0.00 4.40
2262 5977 0.755686 ATTCTCCGACTCCAGCCATC 59.244 55.000 0.00 0.00 0.00 3.51
2334 6049 9.243637 TCTAGCATGTTCAAAATTTTAACACAC 57.756 29.630 19.22 15.79 36.06 3.82
2336 6051 8.436046 AGCATGTTCAAAATTTTAACACACAT 57.564 26.923 19.22 13.21 36.06 3.21
2337 6052 9.539825 AGCATGTTCAAAATTTTAACACACATA 57.460 25.926 19.22 5.41 36.06 2.29
2338 6053 9.796062 GCATGTTCAAAATTTTAACACACATAG 57.204 29.630 19.22 11.94 36.06 2.23
2340 6055 8.879342 TGTTCAAAATTTTAACACACATAGGG 57.121 30.769 15.73 0.00 0.00 3.53
2362 6077 6.663523 AGGGAGTACATTAACAAATTTCAGGG 59.336 38.462 0.00 0.00 0.00 4.45
2369 6084 8.415950 ACATTAACAAATTTCAGGGTGTGATA 57.584 30.769 0.00 0.00 34.17 2.15
2421 6136 1.777878 ACCCCACAACTTACACATGGA 59.222 47.619 0.00 0.00 31.69 3.41
2422 6137 2.378547 ACCCCACAACTTACACATGGAT 59.621 45.455 0.00 0.00 31.69 3.41
2605 6321 2.070399 TTGGAGCCCGGCAAACCTTA 62.070 55.000 13.15 2.54 0.00 2.69
2621 6337 6.313164 GCAAACCTTATTGTAGTAGACAGTCC 59.687 42.308 0.00 0.00 39.88 3.85
2642 6358 1.336609 GGAAGTCGTCGTGCTAAGGTT 60.337 52.381 0.00 0.00 0.00 3.50
2760 6476 1.556911 ACAGATCCGAGCAAATCCACT 59.443 47.619 0.00 0.00 0.00 4.00
2864 6580 6.653989 GGAGACCTTTTATTCCATCTTCAGA 58.346 40.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.895530 TCTTCGTCTCACATCCCACC 59.104 55.000 0.00 0.00 0.00 4.61
7 8 4.120589 GGTTTATCTTCGTCTCACATCCC 58.879 47.826 0.00 0.00 0.00 3.85
8 9 3.797256 CGGTTTATCTTCGTCTCACATCC 59.203 47.826 0.00 0.00 0.00 3.51
9 10 3.797256 CCGGTTTATCTTCGTCTCACATC 59.203 47.826 0.00 0.00 0.00 3.06
10 11 3.446161 TCCGGTTTATCTTCGTCTCACAT 59.554 43.478 0.00 0.00 0.00 3.21
11 12 2.821378 TCCGGTTTATCTTCGTCTCACA 59.179 45.455 0.00 0.00 0.00 3.58
12 13 3.177487 GTCCGGTTTATCTTCGTCTCAC 58.823 50.000 0.00 0.00 0.00 3.51
13 14 2.159476 CGTCCGGTTTATCTTCGTCTCA 60.159 50.000 0.00 0.00 0.00 3.27
14 15 2.096496 TCGTCCGGTTTATCTTCGTCTC 59.904 50.000 0.00 0.00 0.00 3.36
15 16 2.086869 TCGTCCGGTTTATCTTCGTCT 58.913 47.619 0.00 0.00 0.00 4.18
16 17 2.549633 TCGTCCGGTTTATCTTCGTC 57.450 50.000 0.00 0.00 0.00 4.20
17 18 3.302365 TTTCGTCCGGTTTATCTTCGT 57.698 42.857 0.00 0.00 0.00 3.85
18 19 4.852609 ATTTTCGTCCGGTTTATCTTCG 57.147 40.909 0.00 0.00 0.00 3.79
19 20 6.963242 GGTTTATTTTCGTCCGGTTTATCTTC 59.037 38.462 0.00 0.00 0.00 2.87
20 21 6.430616 TGGTTTATTTTCGTCCGGTTTATCTT 59.569 34.615 0.00 0.00 0.00 2.40
21 22 5.939296 TGGTTTATTTTCGTCCGGTTTATCT 59.061 36.000 0.00 0.00 0.00 1.98
22 23 6.092533 TCTGGTTTATTTTCGTCCGGTTTATC 59.907 38.462 0.00 0.00 0.00 1.75
23 24 5.939296 TCTGGTTTATTTTCGTCCGGTTTAT 59.061 36.000 0.00 0.00 0.00 1.40
24 25 5.179182 GTCTGGTTTATTTTCGTCCGGTTTA 59.821 40.000 0.00 0.00 0.00 2.01
25 26 4.023792 GTCTGGTTTATTTTCGTCCGGTTT 60.024 41.667 0.00 0.00 0.00 3.27
26 27 3.499537 GTCTGGTTTATTTTCGTCCGGTT 59.500 43.478 0.00 0.00 0.00 4.44
27 28 3.069289 GTCTGGTTTATTTTCGTCCGGT 58.931 45.455 0.00 0.00 0.00 5.28
28 29 2.093152 CGTCTGGTTTATTTTCGTCCGG 59.907 50.000 0.00 0.00 0.00 5.14
29 30 2.988493 TCGTCTGGTTTATTTTCGTCCG 59.012 45.455 0.00 0.00 0.00 4.79
30 31 4.996062 TTCGTCTGGTTTATTTTCGTCC 57.004 40.909 0.00 0.00 0.00 4.79
32 33 9.977762 GTTATATTTCGTCTGGTTTATTTTCGT 57.022 29.630 0.00 0.00 0.00 3.85
33 34 9.429600 GGTTATATTTCGTCTGGTTTATTTTCG 57.570 33.333 0.00 0.00 0.00 3.46
34 35 9.429600 CGGTTATATTTCGTCTGGTTTATTTTC 57.570 33.333 0.00 0.00 0.00 2.29
35 36 9.165035 TCGGTTATATTTCGTCTGGTTTATTTT 57.835 29.630 0.00 0.00 0.00 1.82
36 37 8.721019 TCGGTTATATTTCGTCTGGTTTATTT 57.279 30.769 0.00 0.00 0.00 1.40
37 38 8.606602 GTTCGGTTATATTTCGTCTGGTTTATT 58.393 33.333 0.00 0.00 0.00 1.40
38 39 7.043192 CGTTCGGTTATATTTCGTCTGGTTTAT 60.043 37.037 0.00 0.00 0.00 1.40
39 40 6.253298 CGTTCGGTTATATTTCGTCTGGTTTA 59.747 38.462 0.00 0.00 0.00 2.01
40 41 5.062558 CGTTCGGTTATATTTCGTCTGGTTT 59.937 40.000 0.00 0.00 0.00 3.27
41 42 4.563976 CGTTCGGTTATATTTCGTCTGGTT 59.436 41.667 0.00 0.00 0.00 3.67
42 43 4.107622 CGTTCGGTTATATTTCGTCTGGT 58.892 43.478 0.00 0.00 0.00 4.00
43 44 4.353737 TCGTTCGGTTATATTTCGTCTGG 58.646 43.478 0.00 0.00 0.00 3.86
44 45 5.937165 TTCGTTCGGTTATATTTCGTCTG 57.063 39.130 0.00 0.00 0.00 3.51
45 46 6.949578 TTTTCGTTCGGTTATATTTCGTCT 57.050 33.333 0.00 0.00 0.00 4.18
46 47 9.687717 TTTATTTTCGTTCGGTTATATTTCGTC 57.312 29.630 0.00 0.00 0.00 4.20
47 48 9.476761 GTTTATTTTCGTTCGGTTATATTTCGT 57.523 29.630 0.00 0.00 0.00 3.85
48 49 8.936936 GGTTTATTTTCGTTCGGTTATATTTCG 58.063 33.333 0.00 0.00 0.00 3.46
49 50 8.936936 CGGTTTATTTTCGTTCGGTTATATTTC 58.063 33.333 0.00 0.00 0.00 2.17
50 51 8.450180 ACGGTTTATTTTCGTTCGGTTATATTT 58.550 29.630 0.00 0.00 32.95 1.40
51 52 7.904461 CACGGTTTATTTTCGTTCGGTTATATT 59.096 33.333 0.00 0.00 34.73 1.28
52 53 7.401080 CACGGTTTATTTTCGTTCGGTTATAT 58.599 34.615 0.00 0.00 34.73 0.86
53 54 6.183360 CCACGGTTTATTTTCGTTCGGTTATA 60.183 38.462 0.00 0.00 34.73 0.98
54 55 5.390779 CCACGGTTTATTTTCGTTCGGTTAT 60.391 40.000 0.00 0.00 34.73 1.89
55 56 4.084118 CCACGGTTTATTTTCGTTCGGTTA 60.084 41.667 0.00 0.00 34.73 2.85
56 57 3.303924 CCACGGTTTATTTTCGTTCGGTT 60.304 43.478 0.00 0.00 34.73 4.44
57 58 2.223845 CCACGGTTTATTTTCGTTCGGT 59.776 45.455 0.00 0.00 34.73 4.69
58 59 2.223845 ACCACGGTTTATTTTCGTTCGG 59.776 45.455 0.00 0.00 34.73 4.30
59 60 3.524763 ACCACGGTTTATTTTCGTTCG 57.475 42.857 0.00 0.00 34.73 3.95
60 61 5.596268 AGTACCACGGTTTATTTTCGTTC 57.404 39.130 0.00 0.00 34.73 3.95
61 62 7.387397 TGAATAGTACCACGGTTTATTTTCGTT 59.613 33.333 0.00 0.00 34.73 3.85
62 63 6.873076 TGAATAGTACCACGGTTTATTTTCGT 59.127 34.615 0.00 0.00 37.64 3.85
63 64 7.293402 TGAATAGTACCACGGTTTATTTTCG 57.707 36.000 0.00 0.00 0.00 3.46
64 65 7.964559 GGTTGAATAGTACCACGGTTTATTTTC 59.035 37.037 0.00 0.00 34.48 2.29
65 66 7.447853 TGGTTGAATAGTACCACGGTTTATTTT 59.552 33.333 0.00 0.00 39.44 1.82
66 67 6.941436 TGGTTGAATAGTACCACGGTTTATTT 59.059 34.615 0.00 0.00 39.44 1.40
67 68 6.474630 TGGTTGAATAGTACCACGGTTTATT 58.525 36.000 0.00 0.00 39.44 1.40
68 69 6.052405 TGGTTGAATAGTACCACGGTTTAT 57.948 37.500 0.00 0.00 39.44 1.40
69 70 5.480642 TGGTTGAATAGTACCACGGTTTA 57.519 39.130 0.00 0.00 39.44 2.01
70 71 4.354893 TGGTTGAATAGTACCACGGTTT 57.645 40.909 0.00 0.00 39.44 3.27
71 72 4.067192 GTTGGTTGAATAGTACCACGGTT 58.933 43.478 0.00 0.00 43.80 4.44
72 73 3.325716 AGTTGGTTGAATAGTACCACGGT 59.674 43.478 0.00 0.00 43.80 4.83
73 74 3.934068 AGTTGGTTGAATAGTACCACGG 58.066 45.455 0.00 0.00 43.80 4.94
74 75 7.760794 TGTATTAGTTGGTTGAATAGTACCACG 59.239 37.037 0.00 0.00 43.80 4.94
75 76 9.609346 ATGTATTAGTTGGTTGAATAGTACCAC 57.391 33.333 0.00 0.00 43.80 4.16
85 86 9.483489 TCTACTCCTAATGTATTAGTTGGTTGA 57.517 33.333 9.96 8.69 38.41 3.18
86 87 9.751542 CTCTACTCCTAATGTATTAGTTGGTTG 57.248 37.037 9.96 7.14 38.41 3.77
87 88 9.710818 TCTCTACTCCTAATGTATTAGTTGGTT 57.289 33.333 9.96 0.00 38.41 3.67
88 89 9.710818 TTCTCTACTCCTAATGTATTAGTTGGT 57.289 33.333 9.96 8.04 38.41 3.67
101 102 9.395068 TCCTACTATCATCTTCTCTACTCCTAA 57.605 37.037 0.00 0.00 0.00 2.69
102 103 8.818860 GTCCTACTATCATCTTCTCTACTCCTA 58.181 40.741 0.00 0.00 0.00 2.94
103 104 7.526526 CGTCCTACTATCATCTTCTCTACTCCT 60.527 44.444 0.00 0.00 0.00 3.69
104 105 6.592607 CGTCCTACTATCATCTTCTCTACTCC 59.407 46.154 0.00 0.00 0.00 3.85
105 106 7.117236 CACGTCCTACTATCATCTTCTCTACTC 59.883 44.444 0.00 0.00 0.00 2.59
106 107 6.932400 CACGTCCTACTATCATCTTCTCTACT 59.068 42.308 0.00 0.00 0.00 2.57
107 108 6.930164 TCACGTCCTACTATCATCTTCTCTAC 59.070 42.308 0.00 0.00 0.00 2.59
108 109 7.063934 TCACGTCCTACTATCATCTTCTCTA 57.936 40.000 0.00 0.00 0.00 2.43
109 110 5.931294 TCACGTCCTACTATCATCTTCTCT 58.069 41.667 0.00 0.00 0.00 3.10
110 111 6.261381 ACTTCACGTCCTACTATCATCTTCTC 59.739 42.308 0.00 0.00 0.00 2.87
111 112 6.123651 ACTTCACGTCCTACTATCATCTTCT 58.876 40.000 0.00 0.00 0.00 2.85
112 113 6.038382 TGACTTCACGTCCTACTATCATCTTC 59.962 42.308 0.00 0.00 42.13 2.87
113 114 5.886474 TGACTTCACGTCCTACTATCATCTT 59.114 40.000 0.00 0.00 42.13 2.40
114 115 5.437946 TGACTTCACGTCCTACTATCATCT 58.562 41.667 0.00 0.00 42.13 2.90
115 116 5.752892 TGACTTCACGTCCTACTATCATC 57.247 43.478 0.00 0.00 42.13 2.92
116 117 7.818997 TTATGACTTCACGTCCTACTATCAT 57.181 36.000 0.00 0.00 42.13 2.45
117 118 7.818997 ATTATGACTTCACGTCCTACTATCA 57.181 36.000 0.00 0.00 42.13 2.15
118 119 9.530633 AAAATTATGACTTCACGTCCTACTATC 57.469 33.333 0.00 0.00 42.13 2.08
119 120 9.530633 GAAAATTATGACTTCACGTCCTACTAT 57.469 33.333 0.00 0.00 42.13 2.12
120 121 8.525316 TGAAAATTATGACTTCACGTCCTACTA 58.475 33.333 0.00 0.00 42.13 1.82
121 122 7.383687 TGAAAATTATGACTTCACGTCCTACT 58.616 34.615 0.00 0.00 42.13 2.57
122 123 7.591006 TGAAAATTATGACTTCACGTCCTAC 57.409 36.000 0.00 0.00 42.13 3.18
123 124 8.610248 TTTGAAAATTATGACTTCACGTCCTA 57.390 30.769 0.00 0.00 42.13 2.94
124 125 7.504924 TTTGAAAATTATGACTTCACGTCCT 57.495 32.000 0.00 0.00 42.13 3.85
125 126 7.273381 CCATTTGAAAATTATGACTTCACGTCC 59.727 37.037 0.00 0.00 42.13 4.79
126 127 8.020819 TCCATTTGAAAATTATGACTTCACGTC 58.979 33.333 0.00 0.00 43.14 4.34
127 128 7.881142 TCCATTTGAAAATTATGACTTCACGT 58.119 30.769 0.00 0.00 0.00 4.49
128 129 8.915871 ATCCATTTGAAAATTATGACTTCACG 57.084 30.769 0.00 0.00 0.00 4.35
129 130 9.859427 TGATCCATTTGAAAATTATGACTTCAC 57.141 29.630 0.00 0.00 0.00 3.18
143 144 9.850198 TGACATATCATACTTGATCCATTTGAA 57.150 29.630 0.00 0.00 41.73 2.69
144 145 9.850198 TTGACATATCATACTTGATCCATTTGA 57.150 29.630 0.00 0.00 41.73 2.69
165 166 9.897744 GAAGTCATGTTTTCTTCATTATTGACA 57.102 29.630 13.31 0.00 37.89 3.58
166 167 9.897744 TGAAGTCATGTTTTCTTCATTATTGAC 57.102 29.630 15.39 0.00 41.33 3.18
169 170 9.398170 CGTTGAAGTCATGTTTTCTTCATTATT 57.602 29.630 17.96 0.00 44.15 1.40
170 171 8.567948 ACGTTGAAGTCATGTTTTCTTCATTAT 58.432 29.630 17.96 9.45 44.15 1.28
171 172 7.855409 CACGTTGAAGTCATGTTTTCTTCATTA 59.145 33.333 17.96 8.39 44.15 1.90
172 173 6.692681 CACGTTGAAGTCATGTTTTCTTCATT 59.307 34.615 17.96 9.16 44.15 2.57
173 174 6.201517 CACGTTGAAGTCATGTTTTCTTCAT 58.798 36.000 17.96 7.94 44.15 2.57
174 175 5.448496 CCACGTTGAAGTCATGTTTTCTTCA 60.448 40.000 15.39 15.39 43.44 3.02
175 176 4.970003 CCACGTTGAAGTCATGTTTTCTTC 59.030 41.667 11.35 11.78 38.30 2.87
176 177 4.733523 GCCACGTTGAAGTCATGTTTTCTT 60.734 41.667 11.35 4.86 0.00 2.52
177 178 3.243068 GCCACGTTGAAGTCATGTTTTCT 60.243 43.478 11.35 0.00 0.00 2.52
178 179 3.042887 GCCACGTTGAAGTCATGTTTTC 58.957 45.455 0.00 0.00 0.00 2.29
179 180 2.540769 CGCCACGTTGAAGTCATGTTTT 60.541 45.455 0.00 0.00 0.00 2.43
180 181 1.002900 CGCCACGTTGAAGTCATGTTT 60.003 47.619 0.00 0.00 0.00 2.83
181 182 0.586319 CGCCACGTTGAAGTCATGTT 59.414 50.000 0.00 0.00 0.00 2.71
182 183 0.249699 TCGCCACGTTGAAGTCATGT 60.250 50.000 0.00 0.00 0.00 3.21
183 184 0.865111 TTCGCCACGTTGAAGTCATG 59.135 50.000 0.00 0.00 0.00 3.07
184 185 1.588674 TTTCGCCACGTTGAAGTCAT 58.411 45.000 0.00 0.00 0.00 3.06
185 186 1.588674 ATTTCGCCACGTTGAAGTCA 58.411 45.000 0.00 0.00 0.00 3.41
186 187 2.681152 AATTTCGCCACGTTGAAGTC 57.319 45.000 0.00 0.00 0.00 3.01
187 188 4.533222 CTTTAATTTCGCCACGTTGAAGT 58.467 39.130 0.00 0.00 0.00 3.01
188 189 3.911964 CCTTTAATTTCGCCACGTTGAAG 59.088 43.478 0.00 0.00 0.00 3.02
189 190 3.315749 ACCTTTAATTTCGCCACGTTGAA 59.684 39.130 0.00 0.00 0.00 2.69
190 191 2.879646 ACCTTTAATTTCGCCACGTTGA 59.120 40.909 0.00 0.00 0.00 3.18
191 192 3.231160 GACCTTTAATTTCGCCACGTTG 58.769 45.455 0.00 0.00 0.00 4.10
192 193 2.227149 GGACCTTTAATTTCGCCACGTT 59.773 45.455 0.00 0.00 0.00 3.99
193 194 1.808343 GGACCTTTAATTTCGCCACGT 59.192 47.619 0.00 0.00 0.00 4.49
194 195 1.807742 TGGACCTTTAATTTCGCCACG 59.192 47.619 0.00 0.00 0.00 4.94
195 196 3.926821 TTGGACCTTTAATTTCGCCAC 57.073 42.857 0.00 0.00 0.00 5.01
196 197 4.939052 TTTTGGACCTTTAATTTCGCCA 57.061 36.364 0.00 0.00 0.00 5.69
197 198 6.649141 AGAAATTTTGGACCTTTAATTTCGCC 59.351 34.615 20.78 9.06 45.12 5.54
198 199 7.383843 TCAGAAATTTTGGACCTTTAATTTCGC 59.616 33.333 20.78 9.49 45.12 4.70
199 200 8.810652 TCAGAAATTTTGGACCTTTAATTTCG 57.189 30.769 20.78 17.69 45.12 3.46
203 204 9.725019 GGATTTCAGAAATTTTGGACCTTTAAT 57.275 29.630 9.84 0.00 0.00 1.40
204 205 8.154203 GGGATTTCAGAAATTTTGGACCTTTAA 58.846 33.333 9.84 0.00 0.00 1.52
205 206 7.512402 AGGGATTTCAGAAATTTTGGACCTTTA 59.488 33.333 9.84 0.00 0.00 1.85
206 207 6.329986 AGGGATTTCAGAAATTTTGGACCTTT 59.670 34.615 9.84 0.00 0.00 3.11
207 208 5.846164 AGGGATTTCAGAAATTTTGGACCTT 59.154 36.000 9.84 0.00 0.00 3.50
208 209 5.406163 AGGGATTTCAGAAATTTTGGACCT 58.594 37.500 9.84 8.13 0.00 3.85
209 210 5.745312 AGGGATTTCAGAAATTTTGGACC 57.255 39.130 9.84 5.34 0.00 4.46
210 211 9.725019 ATTTTAGGGATTTCAGAAATTTTGGAC 57.275 29.630 9.84 0.00 0.00 4.02
241 242 8.531982 CCTCATCCCTCGATATTTATTCAGTAA 58.468 37.037 0.00 0.00 0.00 2.24
242 243 7.893833 TCCTCATCCCTCGATATTTATTCAGTA 59.106 37.037 0.00 0.00 0.00 2.74
243 244 6.726299 TCCTCATCCCTCGATATTTATTCAGT 59.274 38.462 0.00 0.00 0.00 3.41
244 245 7.093552 ACTCCTCATCCCTCGATATTTATTCAG 60.094 40.741 0.00 0.00 0.00 3.02
245 246 6.726299 ACTCCTCATCCCTCGATATTTATTCA 59.274 38.462 0.00 0.00 0.00 2.57
246 247 7.038659 CACTCCTCATCCCTCGATATTTATTC 58.961 42.308 0.00 0.00 0.00 1.75
247 248 6.070538 CCACTCCTCATCCCTCGATATTTATT 60.071 42.308 0.00 0.00 0.00 1.40
248 249 5.423610 CCACTCCTCATCCCTCGATATTTAT 59.576 44.000 0.00 0.00 0.00 1.40
249 250 4.772624 CCACTCCTCATCCCTCGATATTTA 59.227 45.833 0.00 0.00 0.00 1.40
250 251 3.580458 CCACTCCTCATCCCTCGATATTT 59.420 47.826 0.00 0.00 0.00 1.40
251 252 3.169099 CCACTCCTCATCCCTCGATATT 58.831 50.000 0.00 0.00 0.00 1.28
252 253 2.380249 TCCACTCCTCATCCCTCGATAT 59.620 50.000 0.00 0.00 0.00 1.63
253 254 1.780919 TCCACTCCTCATCCCTCGATA 59.219 52.381 0.00 0.00 0.00 2.92
254 255 0.558220 TCCACTCCTCATCCCTCGAT 59.442 55.000 0.00 0.00 0.00 3.59
255 256 0.335019 TTCCACTCCTCATCCCTCGA 59.665 55.000 0.00 0.00 0.00 4.04
256 257 1.418334 ATTCCACTCCTCATCCCTCG 58.582 55.000 0.00 0.00 0.00 4.63
257 258 2.903135 CCTATTCCACTCCTCATCCCTC 59.097 54.545 0.00 0.00 0.00 4.30
258 259 2.524440 TCCTATTCCACTCCTCATCCCT 59.476 50.000 0.00 0.00 0.00 4.20
259 260 2.977808 TCCTATTCCACTCCTCATCCC 58.022 52.381 0.00 0.00 0.00 3.85
260 261 5.373812 TTTTCCTATTCCACTCCTCATCC 57.626 43.478 0.00 0.00 0.00 3.51
261 262 9.883142 CTATATTTTCCTATTCCACTCCTCATC 57.117 37.037 0.00 0.00 0.00 2.92
262 263 9.621239 TCTATATTTTCCTATTCCACTCCTCAT 57.379 33.333 0.00 0.00 0.00 2.90
263 264 9.447279 TTCTATATTTTCCTATTCCACTCCTCA 57.553 33.333 0.00 0.00 0.00 3.86
296 297 9.935241 CTATAATGTAACACCATTAGCTCTCAT 57.065 33.333 0.00 0.00 39.83 2.90
297 298 8.367911 CCTATAATGTAACACCATTAGCTCTCA 58.632 37.037 0.00 0.00 39.83 3.27
298 299 8.585881 TCCTATAATGTAACACCATTAGCTCTC 58.414 37.037 0.00 0.00 39.83 3.20
299 300 8.368668 GTCCTATAATGTAACACCATTAGCTCT 58.631 37.037 0.00 0.00 39.83 4.09
300 301 8.148351 TGTCCTATAATGTAACACCATTAGCTC 58.852 37.037 0.00 0.00 39.83 4.09
301 302 8.029782 TGTCCTATAATGTAACACCATTAGCT 57.970 34.615 0.00 0.00 39.83 3.32
302 303 8.848474 ATGTCCTATAATGTAACACCATTAGC 57.152 34.615 0.00 0.00 39.83 3.09
305 306 9.555727 GTGTATGTCCTATAATGTAACACCATT 57.444 33.333 0.00 0.00 38.54 3.16
308 309 7.958053 GGTGTATGTCCTATAATGTAACACC 57.042 40.000 5.18 5.18 45.17 4.16
309 310 7.168637 CGTGGTGTATGTCCTATAATGTAACAC 59.831 40.741 0.00 0.00 35.21 3.32
310 311 7.204604 CGTGGTGTATGTCCTATAATGTAACA 58.795 38.462 0.00 0.00 0.00 2.41
311 312 6.643770 CCGTGGTGTATGTCCTATAATGTAAC 59.356 42.308 0.00 0.00 0.00 2.50
312 313 6.324512 ACCGTGGTGTATGTCCTATAATGTAA 59.675 38.462 0.00 0.00 0.00 2.41
313 314 5.834742 ACCGTGGTGTATGTCCTATAATGTA 59.165 40.000 0.00 0.00 0.00 2.29
314 315 4.652421 ACCGTGGTGTATGTCCTATAATGT 59.348 41.667 0.00 0.00 0.00 2.71
315 316 4.988540 CACCGTGGTGTATGTCCTATAATG 59.011 45.833 10.94 0.00 40.91 1.90
316 317 4.502604 GCACCGTGGTGTATGTCCTATAAT 60.503 45.833 19.56 0.00 46.90 1.28
317 318 3.181473 GCACCGTGGTGTATGTCCTATAA 60.181 47.826 19.56 0.00 46.90 0.98
318 319 2.363038 GCACCGTGGTGTATGTCCTATA 59.637 50.000 19.56 0.00 46.90 1.31
319 320 1.138266 GCACCGTGGTGTATGTCCTAT 59.862 52.381 19.56 0.00 46.90 2.57
320 321 0.533491 GCACCGTGGTGTATGTCCTA 59.467 55.000 19.56 0.00 46.90 2.94
321 322 1.192146 AGCACCGTGGTGTATGTCCT 61.192 55.000 19.56 5.00 46.90 3.85
322 323 0.321298 AAGCACCGTGGTGTATGTCC 60.321 55.000 19.56 2.75 46.90 4.02
323 324 1.076332 GAAGCACCGTGGTGTATGTC 58.924 55.000 19.56 8.75 46.90 3.06
324 325 0.685097 AGAAGCACCGTGGTGTATGT 59.315 50.000 19.56 5.61 46.90 2.29
325 326 1.078709 CAGAAGCACCGTGGTGTATG 58.921 55.000 19.56 9.89 46.90 2.39
326 327 0.036388 CCAGAAGCACCGTGGTGTAT 60.036 55.000 19.56 9.33 46.90 2.29
327 328 1.369692 CCAGAAGCACCGTGGTGTA 59.630 57.895 19.56 0.00 46.90 2.90
328 329 2.111043 CCAGAAGCACCGTGGTGT 59.889 61.111 19.56 1.26 46.90 4.16
329 330 1.961277 GACCAGAAGCACCGTGGTG 60.961 63.158 14.73 14.73 44.87 4.17
331 332 0.535102 AAAGACCAGAAGCACCGTGG 60.535 55.000 0.00 0.00 37.38 4.94
332 333 0.868406 GAAAGACCAGAAGCACCGTG 59.132 55.000 0.00 0.00 0.00 4.94
333 334 0.468226 TGAAAGACCAGAAGCACCGT 59.532 50.000 0.00 0.00 0.00 4.83
334 335 1.151668 CTGAAAGACCAGAAGCACCG 58.848 55.000 0.00 0.00 36.29 4.94
335 336 0.877743 GCTGAAAGACCAGAAGCACC 59.122 55.000 0.00 0.00 36.29 5.01
336 337 0.514691 CGCTGAAAGACCAGAAGCAC 59.485 55.000 0.00 0.00 36.29 4.40
337 338 0.106708 ACGCTGAAAGACCAGAAGCA 59.893 50.000 0.00 0.00 36.29 3.91
338 339 0.793250 GACGCTGAAAGACCAGAAGC 59.207 55.000 0.00 0.00 36.29 3.86
339 340 1.795286 GTGACGCTGAAAGACCAGAAG 59.205 52.381 0.00 0.00 36.29 2.85
340 341 1.138069 TGTGACGCTGAAAGACCAGAA 59.862 47.619 0.00 0.00 36.29 3.02
341 342 0.750249 TGTGACGCTGAAAGACCAGA 59.250 50.000 0.00 0.00 36.29 3.86
342 343 0.861837 GTGTGACGCTGAAAGACCAG 59.138 55.000 0.00 0.00 34.07 4.00
343 344 0.176910 TGTGTGACGCTGAAAGACCA 59.823 50.000 0.00 0.00 34.07 4.02
344 345 1.195448 CATGTGTGACGCTGAAAGACC 59.805 52.381 0.00 0.00 34.07 3.85
345 346 2.135139 TCATGTGTGACGCTGAAAGAC 58.865 47.619 0.00 0.00 34.07 3.01
346 347 2.524569 TCATGTGTGACGCTGAAAGA 57.475 45.000 0.00 0.00 34.07 2.52
347 348 2.096069 CCTTCATGTGTGACGCTGAAAG 60.096 50.000 10.54 5.65 33.11 2.62
348 349 1.872952 CCTTCATGTGTGACGCTGAAA 59.127 47.619 10.54 0.00 33.11 2.69
349 350 1.202639 ACCTTCATGTGTGACGCTGAA 60.203 47.619 0.00 4.56 33.11 3.02
350 351 0.392706 ACCTTCATGTGTGACGCTGA 59.607 50.000 0.00 0.00 33.11 4.26
351 352 0.792640 GACCTTCATGTGTGACGCTG 59.207 55.000 0.00 0.00 33.11 5.18
352 353 0.681733 AGACCTTCATGTGTGACGCT 59.318 50.000 0.00 0.00 33.11 5.07
353 354 1.512926 AAGACCTTCATGTGTGACGC 58.487 50.000 0.00 0.00 33.11 5.19
354 355 2.349817 GCAAAGACCTTCATGTGTGACG 60.350 50.000 0.00 0.00 33.11 4.35
355 356 2.618241 TGCAAAGACCTTCATGTGTGAC 59.382 45.455 0.00 0.00 33.11 3.67
356 357 2.929641 TGCAAAGACCTTCATGTGTGA 58.070 42.857 0.00 0.00 0.00 3.58
357 358 3.713858 TTGCAAAGACCTTCATGTGTG 57.286 42.857 0.00 0.00 0.00 3.82
358 359 5.536161 AGTTATTGCAAAGACCTTCATGTGT 59.464 36.000 1.71 0.00 0.00 3.72
359 360 6.017400 AGTTATTGCAAAGACCTTCATGTG 57.983 37.500 1.71 0.00 0.00 3.21
360 361 6.655078 AAGTTATTGCAAAGACCTTCATGT 57.345 33.333 1.71 0.00 0.00 3.21
361 362 9.643693 AATTAAGTTATTGCAAAGACCTTCATG 57.356 29.630 1.71 0.00 0.00 3.07
362 363 9.860898 GAATTAAGTTATTGCAAAGACCTTCAT 57.139 29.630 1.71 0.00 0.00 2.57
363 364 8.855110 TGAATTAAGTTATTGCAAAGACCTTCA 58.145 29.630 1.71 9.07 0.00 3.02
364 365 9.691362 TTGAATTAAGTTATTGCAAAGACCTTC 57.309 29.630 1.71 6.93 0.00 3.46
411 412 8.472683 TCTCACAAAAACATTACCAAACTTTG 57.527 30.769 0.00 0.00 0.00 2.77
412 413 9.097257 CATCTCACAAAAACATTACCAAACTTT 57.903 29.630 0.00 0.00 0.00 2.66
413 414 8.257306 ACATCTCACAAAAACATTACCAAACTT 58.743 29.630 0.00 0.00 0.00 2.66
414 415 7.781056 ACATCTCACAAAAACATTACCAAACT 58.219 30.769 0.00 0.00 0.00 2.66
415 416 9.522804 TTACATCTCACAAAAACATTACCAAAC 57.477 29.630 0.00 0.00 0.00 2.93
418 419 9.689976 CATTTACATCTCACAAAAACATTACCA 57.310 29.630 0.00 0.00 0.00 3.25
419 420 9.691362 ACATTTACATCTCACAAAAACATTACC 57.309 29.630 0.00 0.00 0.00 2.85
423 424 9.677567 GTACACATTTACATCTCACAAAAACAT 57.322 29.630 0.00 0.00 0.00 2.71
424 425 8.898761 AGTACACATTTACATCTCACAAAAACA 58.101 29.630 0.00 0.00 0.00 2.83
425 426 9.730420 AAGTACACATTTACATCTCACAAAAAC 57.270 29.630 0.00 0.00 0.00 2.43
518 519 9.550811 GCGCGGCTAAACTAAATATTTTTATAT 57.449 29.630 8.83 0.00 0.00 0.86
519 520 8.557864 TGCGCGGCTAAACTAAATATTTTTATA 58.442 29.630 8.83 0.00 0.00 0.98
520 521 7.419204 TGCGCGGCTAAACTAAATATTTTTAT 58.581 30.769 8.83 0.00 0.00 1.40
521 522 6.783162 TGCGCGGCTAAACTAAATATTTTTA 58.217 32.000 8.83 0.00 0.00 1.52
522 523 5.642686 TGCGCGGCTAAACTAAATATTTTT 58.357 33.333 8.83 0.00 0.00 1.94
523 524 5.238006 TGCGCGGCTAAACTAAATATTTT 57.762 34.783 8.83 0.00 0.00 1.82
524 525 4.886247 TGCGCGGCTAAACTAAATATTT 57.114 36.364 8.83 5.89 0.00 1.40
525 526 4.886247 TTGCGCGGCTAAACTAAATATT 57.114 36.364 8.83 0.00 0.00 1.28
526 527 4.886247 TTTGCGCGGCTAAACTAAATAT 57.114 36.364 8.83 0.00 0.00 1.28
527 528 4.593157 CATTTGCGCGGCTAAACTAAATA 58.407 39.130 8.83 0.00 0.00 1.40
528 529 3.434637 CATTTGCGCGGCTAAACTAAAT 58.565 40.909 8.83 0.00 0.00 1.40
529 530 2.857618 CATTTGCGCGGCTAAACTAAA 58.142 42.857 8.83 0.00 0.00 1.85
530 531 1.466697 GCATTTGCGCGGCTAAACTAA 60.467 47.619 8.83 0.00 0.00 2.24
531 532 0.098025 GCATTTGCGCGGCTAAACTA 59.902 50.000 8.83 0.00 0.00 2.24
532 533 1.154035 GCATTTGCGCGGCTAAACT 60.154 52.632 8.83 0.00 0.00 2.66
533 534 3.373278 GCATTTGCGCGGCTAAAC 58.627 55.556 8.83 0.00 0.00 2.01
543 544 2.612219 ATTGCTACCCGCGCATTTGC 62.612 55.000 8.75 5.28 43.27 3.68
544 545 0.866906 CATTGCTACCCGCGCATTTG 60.867 55.000 8.75 0.00 43.27 2.32
545 546 1.433064 CATTGCTACCCGCGCATTT 59.567 52.632 8.75 0.00 43.27 2.32
546 547 3.110139 CATTGCTACCCGCGCATT 58.890 55.556 8.75 0.00 43.27 3.56
547 548 2.658679 TAGCATTGCTACCCGCGCAT 62.659 55.000 14.33 0.00 43.27 4.73
548 549 3.378399 TAGCATTGCTACCCGCGCA 62.378 57.895 14.33 0.00 43.27 6.09
549 550 2.587753 TAGCATTGCTACCCGCGC 60.588 61.111 14.33 0.00 43.27 6.86
550 551 0.810031 AACTAGCATTGCTACCCGCG 60.810 55.000 14.33 0.00 43.27 6.46
551 552 0.657840 CAACTAGCATTGCTACCCGC 59.342 55.000 14.33 0.00 40.44 6.13
552 553 1.299541 CCAACTAGCATTGCTACCCG 58.700 55.000 14.33 7.92 40.44 5.28
553 554 1.211949 TCCCAACTAGCATTGCTACCC 59.788 52.381 14.33 0.00 40.44 3.69
554 555 2.710096 TCCCAACTAGCATTGCTACC 57.290 50.000 14.33 0.00 40.44 3.18
555 556 3.873910 TCTTCCCAACTAGCATTGCTAC 58.126 45.455 14.33 0.00 40.44 3.58
556 557 4.568072 TTCTTCCCAACTAGCATTGCTA 57.432 40.909 17.11 17.11 40.44 3.49
557 558 3.439857 TTCTTCCCAACTAGCATTGCT 57.560 42.857 16.63 16.63 43.41 3.91
558 559 4.725790 AATTCTTCCCAACTAGCATTGC 57.274 40.909 0.00 0.00 0.00 3.56
559 560 6.183360 CCTGTAATTCTTCCCAACTAGCATTG 60.183 42.308 0.00 0.00 0.00 2.82
560 561 5.888161 CCTGTAATTCTTCCCAACTAGCATT 59.112 40.000 0.00 0.00 0.00 3.56
561 562 5.191722 TCCTGTAATTCTTCCCAACTAGCAT 59.808 40.000 0.00 0.00 0.00 3.79
562 563 4.534500 TCCTGTAATTCTTCCCAACTAGCA 59.466 41.667 0.00 0.00 0.00 3.49
563 564 5.099042 TCCTGTAATTCTTCCCAACTAGC 57.901 43.478 0.00 0.00 0.00 3.42
564 565 6.301169 ACTCCTGTAATTCTTCCCAACTAG 57.699 41.667 0.00 0.00 0.00 2.57
565 566 6.958192 AGTACTCCTGTAATTCTTCCCAACTA 59.042 38.462 0.00 0.00 0.00 2.24
566 567 5.785940 AGTACTCCTGTAATTCTTCCCAACT 59.214 40.000 0.00 0.00 0.00 3.16
567 568 6.051179 AGTACTCCTGTAATTCTTCCCAAC 57.949 41.667 0.00 0.00 0.00 3.77
663 664 1.718280 ACGAGGAGTCCCAGTTCTTT 58.282 50.000 5.25 0.00 33.88 2.52
738 740 8.988546 ACCTTGTTGTTATTATATATGTGGCA 57.011 30.769 0.00 0.00 0.00 4.92
768 770 9.236498 TGTGCCAATGAATATATATAGGGGTAT 57.764 33.333 0.00 0.00 0.00 2.73
769 771 8.631275 TGTGCCAATGAATATATATAGGGGTA 57.369 34.615 0.00 0.00 0.00 3.69
770 772 7.523703 TGTGCCAATGAATATATATAGGGGT 57.476 36.000 0.00 0.00 0.00 4.95
771 773 6.488006 GCTGTGCCAATGAATATATATAGGGG 59.512 42.308 0.00 0.00 0.00 4.79
772 774 7.285566 AGCTGTGCCAATGAATATATATAGGG 58.714 38.462 0.00 0.00 0.00 3.53
773 775 7.443575 GGAGCTGTGCCAATGAATATATATAGG 59.556 40.741 0.00 0.00 0.00 2.57
774 776 7.989170 TGGAGCTGTGCCAATGAATATATATAG 59.011 37.037 0.00 0.00 31.13 1.31
775 777 7.860584 TGGAGCTGTGCCAATGAATATATATA 58.139 34.615 0.00 0.00 31.13 0.86
788 790 1.068895 CAAAATGTTGGAGCTGTGCCA 59.931 47.619 0.00 0.00 0.00 4.92
923 925 2.486636 AAGCCGATCGTCGTTGCTGA 62.487 55.000 15.09 0.00 37.44 4.26
974 976 2.022129 GTCGTGCGTGCTTACTGCT 61.022 57.895 0.00 0.00 43.37 4.24
977 987 2.022129 GCTGTCGTGCGTGCTTACT 61.022 57.895 0.00 0.00 0.00 2.24
1347 1360 1.674651 GTCTTCCCGGGCAAACTCC 60.675 63.158 18.49 0.00 0.00 3.85
1430 1711 4.153117 GTCATCGAGCAATCAGTGTTTCTT 59.847 41.667 0.00 0.00 0.00 2.52
1471 1753 0.881159 CGGAACCAAGCGTACACCAA 60.881 55.000 0.00 0.00 0.00 3.67
1474 1756 2.858158 GCGGAACCAAGCGTACAC 59.142 61.111 0.00 0.00 0.00 2.90
1537 5169 0.452585 CATCCATGCATGCGTGACAA 59.547 50.000 35.91 22.46 35.09 3.18
1575 5278 1.334419 CCGCAAATCATTCATCTCCGC 60.334 52.381 0.00 0.00 0.00 5.54
1577 5280 2.542411 GCACCGCAAATCATTCATCTCC 60.542 50.000 0.00 0.00 0.00 3.71
2261 5976 3.685139 ATTTTCGCCACTGAAGAGAGA 57.315 42.857 0.00 0.00 0.00 3.10
2262 5977 4.208047 CGATATTTTCGCCACTGAAGAGAG 59.792 45.833 0.00 0.00 41.69 3.20
2336 6051 7.832187 CCCTGAAATTTGTTAATGTACTCCCTA 59.168 37.037 0.00 0.00 0.00 3.53
2337 6052 6.663523 CCCTGAAATTTGTTAATGTACTCCCT 59.336 38.462 0.00 0.00 0.00 4.20
2338 6053 6.436218 ACCCTGAAATTTGTTAATGTACTCCC 59.564 38.462 0.00 0.00 0.00 4.30
2339 6054 7.039993 ACACCCTGAAATTTGTTAATGTACTCC 60.040 37.037 0.00 0.00 0.00 3.85
2340 6055 7.807907 CACACCCTGAAATTTGTTAATGTACTC 59.192 37.037 0.00 0.00 0.00 2.59
2380 6095 4.082245 GGTATTCCATGTGAAAGTTGTGGG 60.082 45.833 0.00 0.00 36.33 4.61
2572 6288 1.306141 TCCAATGAGGGAGGAGCGT 60.306 57.895 0.00 0.00 38.24 5.07
2605 6321 4.342359 ACTTCCGGACTGTCTACTACAAT 58.658 43.478 1.83 0.00 37.74 2.71
2621 6337 0.797249 CCTTAGCACGACGACTTCCG 60.797 60.000 0.00 0.00 45.44 4.30
2642 6358 2.976185 TCTGGTGTGTTGGTTCTATGGA 59.024 45.455 0.00 0.00 0.00 3.41
2760 6476 2.681848 GTCTCCGACGGATCTGTCTTTA 59.318 50.000 27.81 14.41 36.71 1.85
2850 6566 3.206150 GCGGCTTTCTGAAGATGGAATA 58.794 45.455 0.00 0.00 34.71 1.75
2884 6600 1.145803 GTTTGTGTACCGCTCAGGAC 58.854 55.000 0.00 0.00 45.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.