Multiple sequence alignment - TraesCS1D01G117000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G117000 chr1D 100.000 3028 0 0 1 3028 112772758 112769731 0.000000e+00 5592.0
1 TraesCS1D01G117000 chr1D 94.872 39 2 0 2262 2300 112770456 112770418 9.060000e-06 62.1
2 TraesCS1D01G117000 chr1D 94.872 39 2 0 2303 2341 112770497 112770459 9.060000e-06 62.1
3 TraesCS1D01G117000 chr1A 88.570 1531 108 27 1554 3028 120011971 120010452 0.000000e+00 1796.0
4 TraesCS1D01G117000 chr1A 88.852 1220 85 31 1 1205 120013534 120012351 0.000000e+00 1452.0
5 TraesCS1D01G117000 chr1A 96.552 145 5 0 1361 1505 120012360 120012216 1.080000e-59 241.0
6 TraesCS1D01G117000 chr1B 90.663 1146 65 11 1913 3028 172382089 172380956 0.000000e+00 1485.0
7 TraesCS1D01G117000 chr1B 93.945 545 26 4 661 1205 172388407 172387870 0.000000e+00 817.0
8 TraesCS1D01G117000 chr1B 94.631 149 8 0 1728 1876 172387337 172387189 6.530000e-57 231.0
9 TraesCS1D01G117000 chr1B 92.908 141 8 2 1364 1503 172387876 172387737 1.420000e-48 204.0
10 TraesCS1D01G117000 chr1B 92.800 125 9 0 1554 1678 172387473 172387349 6.670000e-42 182.0
11 TraesCS1D01G117000 chr7B 97.484 159 4 0 1205 1363 4920233 4920075 3.850000e-69 272.0
12 TraesCS1D01G117000 chr7B 96.154 156 6 0 1206 1361 680543718 680543563 3.870000e-64 255.0
13 TraesCS1D01G117000 chr7B 77.660 94 21 0 200 293 724959447 724959354 1.170000e-04 58.4
14 TraesCS1D01G117000 chr4D 98.077 156 3 0 1205 1360 455598038 455598193 3.850000e-69 272.0
15 TraesCS1D01G117000 chr4D 96.154 156 6 0 1205 1360 120833952 120834107 3.870000e-64 255.0
16 TraesCS1D01G117000 chr3B 96.178 157 6 0 1205 1361 736318071 736318227 1.080000e-64 257.0
17 TraesCS1D01G117000 chr5A 95.541 157 7 0 1205 1361 30666465 30666621 5.010000e-63 252.0
18 TraesCS1D01G117000 chr5A 92.357 157 12 0 1204 1360 407503661 407503505 1.090000e-54 224.0
19 TraesCS1D01G117000 chr5A 79.503 161 28 4 98 254 55154874 55155033 3.190000e-20 110.0
20 TraesCS1D01G117000 chr5A 100.000 28 0 0 200 227 2847697 2847724 5.000000e-03 52.8
21 TraesCS1D01G117000 chr7A 95.513 156 7 0 1205 1360 662667801 662667646 1.800000e-62 250.0
22 TraesCS1D01G117000 chr7A 81.651 109 18 2 551 658 730234998 730234891 4.160000e-14 89.8
23 TraesCS1D01G117000 chr6B 95.513 156 7 0 1205 1360 702214544 702214389 1.800000e-62 250.0
24 TraesCS1D01G117000 chr6B 73.726 628 124 32 28 632 628845041 628844432 1.100000e-49 207.0
25 TraesCS1D01G117000 chr6B 75.000 272 48 17 339 602 23113191 23113450 1.150000e-19 108.0
26 TraesCS1D01G117000 chr6B 85.870 92 11 2 1044 1135 276740025 276740114 2.480000e-16 97.1
27 TraesCS1D01G117000 chr2A 85.185 108 16 0 550 657 721607195 721607302 8.870000e-21 111.0
28 TraesCS1D01G117000 chr3D 89.655 87 8 1 1049 1135 90369660 90369745 3.190000e-20 110.0
29 TraesCS1D01G117000 chr3D 83.562 73 11 1 551 622 579566314 579566242 1.950000e-07 67.6
30 TraesCS1D01G117000 chr3A 79.618 157 25 3 113 263 620752975 620753130 4.130000e-19 106.0
31 TraesCS1D01G117000 chr3A 77.358 159 26 10 475 629 9891247 9891095 5.380000e-13 86.1
32 TraesCS1D01G117000 chr3A 79.070 129 21 6 476 601 63031885 63032010 1.930000e-12 84.2
33 TraesCS1D01G117000 chr7D 85.567 97 9 4 551 644 595330160 595330254 2.480000e-16 97.1
34 TraesCS1D01G117000 chr7D 71.082 536 97 40 76 577 86291341 86290830 9.000000e-11 78.7
35 TraesCS1D01G117000 chr6D 85.870 92 11 2 1044 1135 152263859 152263948 2.480000e-16 97.1
36 TraesCS1D01G117000 chr6D 100.000 28 0 0 200 227 435067745 435067718 5.000000e-03 52.8
37 TraesCS1D01G117000 chr6A 85.870 92 11 2 1044 1135 190599648 190599559 2.480000e-16 97.1
38 TraesCS1D01G117000 chr2D 77.059 170 31 7 411 578 570997844 570997681 1.160000e-14 91.6
39 TraesCS1D01G117000 chr5B 77.500 160 29 7 488 644 380310941 380310786 4.160000e-14 89.8
40 TraesCS1D01G117000 chr2B 79.787 94 18 1 549 642 24813647 24813739 1.950000e-07 67.6
41 TraesCS1D01G117000 chr5D 78.125 96 18 3 200 293 335757261 335757355 1.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G117000 chr1D 112769731 112772758 3027 True 1905.4 5592 96.581333 1 3028 3 chr1D.!!$R1 3027
1 TraesCS1D01G117000 chr1A 120010452 120013534 3082 True 1163.0 1796 91.324667 1 3028 3 chr1A.!!$R1 3027
2 TraesCS1D01G117000 chr1B 172380956 172382089 1133 True 1485.0 1485 90.663000 1913 3028 1 chr1B.!!$R1 1115
3 TraesCS1D01G117000 chr1B 172387189 172388407 1218 True 358.5 817 93.571000 661 1876 4 chr1B.!!$R2 1215
4 TraesCS1D01G117000 chr6B 628844432 628845041 609 True 207.0 207 73.726000 28 632 1 chr6B.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 947 0.672401 ATTAATATCGCCACGCCCCG 60.672 55.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2706 3036 0.10339 TGAAGCGTTCCTCGACAACA 59.897 50.0 3.93 0.0 42.86 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.068250 GAGGCACGGCTATGTCTCC 59.932 63.158 10.23 0.00 44.13 3.71
39 40 1.693627 GCTATGTCTCCCGAGGAAGA 58.306 55.000 0.00 0.00 0.00 2.87
43 44 2.833631 TGTCTCCCGAGGAAGAAAAC 57.166 50.000 0.00 0.00 0.00 2.43
68 69 5.796350 GTGCGTCCACAAGAACTAAATAT 57.204 39.130 0.00 0.00 41.67 1.28
71 72 5.350365 TGCGTCCACAAGAACTAAATATGTC 59.650 40.000 0.00 0.00 0.00 3.06
143 144 2.422276 GTGCCTTTCACGAAAGCAAT 57.578 45.000 13.03 0.00 44.76 3.56
175 176 1.287425 CGAGAAGTAAATCCGTGCCC 58.713 55.000 0.00 0.00 0.00 5.36
179 180 0.988832 AAGTAAATCCGTGCCCCTCA 59.011 50.000 0.00 0.00 0.00 3.86
195 199 5.779771 TGCCCCTCACAGAAAGAAAAATAAT 59.220 36.000 0.00 0.00 0.00 1.28
350 358 3.774766 TGCCTCTAGTAGAAGCAAATCCA 59.225 43.478 19.03 0.00 38.61 3.41
379 387 6.279513 TCATGAAAAATAAATCCGTGCCTT 57.720 33.333 0.00 0.00 0.00 4.35
429 470 8.233190 TCACGCAAAATTTTCTTTGTCAAAAAT 58.767 25.926 0.00 0.00 38.35 1.82
460 522 1.897560 CGAAGGAAAACCAAGAGGCT 58.102 50.000 0.00 0.00 39.06 4.58
461 523 1.537202 CGAAGGAAAACCAAGAGGCTG 59.463 52.381 0.00 0.00 39.06 4.85
462 524 1.889170 GAAGGAAAACCAAGAGGCTGG 59.111 52.381 0.00 0.00 42.68 4.85
463 525 1.149101 AGGAAAACCAAGAGGCTGGA 58.851 50.000 0.00 0.00 38.96 3.86
464 526 1.499007 AGGAAAACCAAGAGGCTGGAA 59.501 47.619 0.00 0.00 38.96 3.53
465 527 2.091333 AGGAAAACCAAGAGGCTGGAAA 60.091 45.455 0.00 0.00 38.96 3.13
466 528 2.698274 GGAAAACCAAGAGGCTGGAAAA 59.302 45.455 0.00 0.00 38.96 2.29
467 529 3.133901 GGAAAACCAAGAGGCTGGAAAAA 59.866 43.478 0.00 0.00 38.96 1.94
492 554 6.901081 ACCCTGAAAAAGTCATCTAAAAGG 57.099 37.500 0.00 0.00 35.07 3.11
596 658 1.741401 TCAAATGACGCGCTCCCAG 60.741 57.895 5.73 0.00 0.00 4.45
606 668 2.045536 GCTCCCAGCCCACTCAAG 60.046 66.667 0.00 0.00 34.48 3.02
644 706 0.747283 TCCGGAGAAGTACTCGCTCC 60.747 60.000 24.64 24.64 45.76 4.70
650 712 3.695556 GGAGAAGTACTCGCTCCTTAGTT 59.304 47.826 26.12 0.00 45.76 2.24
689 751 6.655930 TGGTACAGAGGTGGTATATTTTTCC 58.344 40.000 0.00 0.00 0.00 3.13
707 770 2.898662 TCCTTTTTAGAGGTCCGGACT 58.101 47.619 32.52 19.24 38.04 3.85
882 947 0.672401 ATTAATATCGCCACGCCCCG 60.672 55.000 0.00 0.00 0.00 5.73
896 961 3.148279 CCCGTCTTCCTCCCTCCG 61.148 72.222 0.00 0.00 0.00 4.63
948 1013 1.297967 CACGATCGAGACGAGCAGG 60.298 63.158 24.34 0.00 42.67 4.85
954 1019 1.298713 CGAGACGAGCAGGGAATCG 60.299 63.158 0.00 0.00 44.36 3.34
1207 1275 3.668641 CGTTGTTACGCCATGGAAC 57.331 52.632 18.40 11.98 41.41 3.62
1208 1276 0.167251 CGTTGTTACGCCATGGAACC 59.833 55.000 18.40 0.00 41.41 3.62
1209 1277 1.530323 GTTGTTACGCCATGGAACCT 58.470 50.000 18.40 0.00 0.00 3.50
1210 1278 1.883926 GTTGTTACGCCATGGAACCTT 59.116 47.619 18.40 0.00 0.00 3.50
1211 1279 1.529226 TGTTACGCCATGGAACCTTG 58.471 50.000 18.40 0.00 0.00 3.61
1212 1280 0.170339 GTTACGCCATGGAACCTTGC 59.830 55.000 18.40 0.00 0.00 4.01
1213 1281 0.037590 TTACGCCATGGAACCTTGCT 59.962 50.000 18.40 0.00 0.00 3.91
1214 1282 0.906066 TACGCCATGGAACCTTGCTA 59.094 50.000 18.40 0.00 0.00 3.49
1215 1283 0.255890 ACGCCATGGAACCTTGCTAT 59.744 50.000 18.40 0.00 0.00 2.97
1216 1284 1.488812 ACGCCATGGAACCTTGCTATA 59.511 47.619 18.40 0.00 0.00 1.31
1217 1285 1.873591 CGCCATGGAACCTTGCTATAC 59.126 52.381 18.40 0.00 0.00 1.47
1218 1286 1.873591 GCCATGGAACCTTGCTATACG 59.126 52.381 18.40 0.00 0.00 3.06
1219 1287 2.745152 GCCATGGAACCTTGCTATACGT 60.745 50.000 18.40 0.00 0.00 3.57
1220 1288 3.493699 GCCATGGAACCTTGCTATACGTA 60.494 47.826 18.40 0.00 0.00 3.57
1221 1289 4.056050 CCATGGAACCTTGCTATACGTAC 58.944 47.826 5.56 0.00 0.00 3.67
1222 1290 3.425577 TGGAACCTTGCTATACGTACG 57.574 47.619 15.01 15.01 0.00 3.67
1223 1291 3.016031 TGGAACCTTGCTATACGTACGA 58.984 45.455 24.41 6.04 0.00 3.43
1224 1292 3.633525 TGGAACCTTGCTATACGTACGAT 59.366 43.478 24.41 13.27 0.00 3.73
1225 1293 4.821260 TGGAACCTTGCTATACGTACGATA 59.179 41.667 24.41 13.69 0.00 2.92
1226 1294 5.299028 TGGAACCTTGCTATACGTACGATAA 59.701 40.000 24.41 7.24 0.00 1.75
1227 1295 6.183360 TGGAACCTTGCTATACGTACGATAAA 60.183 38.462 24.41 4.52 0.00 1.40
1228 1296 6.865205 GGAACCTTGCTATACGTACGATAAAT 59.135 38.462 24.41 11.69 0.00 1.40
1229 1297 7.383300 GGAACCTTGCTATACGTACGATAAATT 59.617 37.037 24.41 0.00 0.00 1.82
1230 1298 7.864307 ACCTTGCTATACGTACGATAAATTC 57.136 36.000 24.41 5.14 0.00 2.17
1248 1316 2.624316 TCGTGTCGAACACTCCATAC 57.376 50.000 13.65 0.00 46.46 2.39
1249 1317 1.881324 TCGTGTCGAACACTCCATACA 59.119 47.619 13.65 0.00 46.46 2.29
1250 1318 2.293955 TCGTGTCGAACACTCCATACAA 59.706 45.455 13.65 0.00 46.46 2.41
1251 1319 3.057104 TCGTGTCGAACACTCCATACAAT 60.057 43.478 13.65 0.00 46.46 2.71
1252 1320 3.678072 CGTGTCGAACACTCCATACAATT 59.322 43.478 13.65 0.00 46.46 2.32
1253 1321 4.860352 CGTGTCGAACACTCCATACAATTA 59.140 41.667 13.65 0.00 46.46 1.40
1254 1322 5.004440 CGTGTCGAACACTCCATACAATTAG 59.996 44.000 13.65 0.00 46.46 1.73
1255 1323 6.097356 GTGTCGAACACTCCATACAATTAGA 58.903 40.000 9.86 0.00 45.27 2.10
1256 1324 6.253727 GTGTCGAACACTCCATACAATTAGAG 59.746 42.308 9.86 0.00 45.27 2.43
1257 1325 6.152154 TGTCGAACACTCCATACAATTAGAGA 59.848 38.462 0.00 0.00 0.00 3.10
1258 1326 6.472808 GTCGAACACTCCATACAATTAGAGAC 59.527 42.308 0.00 0.00 0.00 3.36
1259 1327 6.152154 TCGAACACTCCATACAATTAGAGACA 59.848 38.462 0.00 0.00 0.00 3.41
1260 1328 6.473778 CGAACACTCCATACAATTAGAGACAG 59.526 42.308 0.00 0.00 0.00 3.51
1261 1329 5.665459 ACACTCCATACAATTAGAGACAGC 58.335 41.667 0.00 0.00 0.00 4.40
1262 1330 5.053145 CACTCCATACAATTAGAGACAGCC 58.947 45.833 0.00 0.00 0.00 4.85
1263 1331 4.716784 ACTCCATACAATTAGAGACAGCCA 59.283 41.667 0.00 0.00 0.00 4.75
1264 1332 5.367937 ACTCCATACAATTAGAGACAGCCAT 59.632 40.000 0.00 0.00 0.00 4.40
1265 1333 6.554982 ACTCCATACAATTAGAGACAGCCATA 59.445 38.462 0.00 0.00 0.00 2.74
1266 1334 6.997655 TCCATACAATTAGAGACAGCCATAG 58.002 40.000 0.00 0.00 0.00 2.23
1267 1335 6.782494 TCCATACAATTAGAGACAGCCATAGA 59.218 38.462 0.00 0.00 0.00 1.98
1268 1336 7.455953 TCCATACAATTAGAGACAGCCATAGAT 59.544 37.037 0.00 0.00 0.00 1.98
1269 1337 7.548427 CCATACAATTAGAGACAGCCATAGATG 59.452 40.741 0.00 0.00 34.82 2.90
1270 1338 6.737720 ACAATTAGAGACAGCCATAGATGA 57.262 37.500 0.00 0.00 32.31 2.92
1271 1339 7.313740 ACAATTAGAGACAGCCATAGATGAT 57.686 36.000 0.00 0.00 32.31 2.45
1272 1340 7.743749 ACAATTAGAGACAGCCATAGATGATT 58.256 34.615 0.00 0.00 32.31 2.57
1273 1341 7.877097 ACAATTAGAGACAGCCATAGATGATTC 59.123 37.037 0.00 0.00 32.31 2.52
1274 1342 6.983906 TTAGAGACAGCCATAGATGATTCA 57.016 37.500 0.00 0.00 32.31 2.57
1275 1343 5.471556 AGAGACAGCCATAGATGATTCAG 57.528 43.478 0.00 0.00 32.31 3.02
1276 1344 4.900652 AGAGACAGCCATAGATGATTCAGT 59.099 41.667 0.00 0.00 32.31 3.41
1277 1345 5.366186 AGAGACAGCCATAGATGATTCAGTT 59.634 40.000 0.00 0.00 32.31 3.16
1278 1346 5.609423 AGACAGCCATAGATGATTCAGTTC 58.391 41.667 0.00 0.00 32.31 3.01
1279 1347 4.375272 ACAGCCATAGATGATTCAGTTCG 58.625 43.478 0.00 0.00 32.31 3.95
1280 1348 4.141846 ACAGCCATAGATGATTCAGTTCGT 60.142 41.667 0.00 0.00 32.31 3.85
1281 1349 4.210746 CAGCCATAGATGATTCAGTTCGTG 59.789 45.833 0.00 0.00 0.00 4.35
1282 1350 3.496130 GCCATAGATGATTCAGTTCGTGG 59.504 47.826 8.92 8.92 0.00 4.94
1283 1351 4.060900 CCATAGATGATTCAGTTCGTGGG 58.939 47.826 0.00 0.00 0.00 4.61
1284 1352 2.029838 AGATGATTCAGTTCGTGGGC 57.970 50.000 0.00 0.00 0.00 5.36
1285 1353 1.017387 GATGATTCAGTTCGTGGGCC 58.983 55.000 0.00 0.00 0.00 5.80
1286 1354 0.394352 ATGATTCAGTTCGTGGGCCC 60.394 55.000 17.59 17.59 0.00 5.80
1287 1355 1.299976 GATTCAGTTCGTGGGCCCT 59.700 57.895 25.70 0.00 0.00 5.19
1288 1356 0.539986 GATTCAGTTCGTGGGCCCTA 59.460 55.000 25.70 6.58 0.00 3.53
1289 1357 0.541863 ATTCAGTTCGTGGGCCCTAG 59.458 55.000 25.70 17.14 0.00 3.02
1290 1358 0.834687 TTCAGTTCGTGGGCCCTAGT 60.835 55.000 25.70 5.80 0.00 2.57
1291 1359 0.040058 TCAGTTCGTGGGCCCTAGTA 59.960 55.000 25.70 7.87 0.00 1.82
1292 1360 1.120530 CAGTTCGTGGGCCCTAGTAT 58.879 55.000 25.70 1.19 0.00 2.12
1293 1361 1.485066 CAGTTCGTGGGCCCTAGTATT 59.515 52.381 25.70 4.60 0.00 1.89
1294 1362 2.093128 CAGTTCGTGGGCCCTAGTATTT 60.093 50.000 25.70 0.00 0.00 1.40
1295 1363 3.133362 CAGTTCGTGGGCCCTAGTATTTA 59.867 47.826 25.70 0.00 0.00 1.40
1296 1364 3.387050 AGTTCGTGGGCCCTAGTATTTAG 59.613 47.826 25.70 3.60 0.00 1.85
1297 1365 3.317455 TCGTGGGCCCTAGTATTTAGA 57.683 47.619 25.70 5.99 0.00 2.10
1298 1366 3.228453 TCGTGGGCCCTAGTATTTAGAG 58.772 50.000 25.70 0.00 0.00 2.43
1299 1367 3.117398 TCGTGGGCCCTAGTATTTAGAGA 60.117 47.826 25.70 0.00 0.00 3.10
1300 1368 3.833070 CGTGGGCCCTAGTATTTAGAGAT 59.167 47.826 25.70 0.00 0.00 2.75
1301 1369 4.322049 CGTGGGCCCTAGTATTTAGAGATG 60.322 50.000 25.70 0.00 0.00 2.90
1302 1370 4.838986 GTGGGCCCTAGTATTTAGAGATGA 59.161 45.833 25.70 0.00 0.00 2.92
1303 1371 5.485708 GTGGGCCCTAGTATTTAGAGATGAT 59.514 44.000 25.70 0.00 0.00 2.45
1304 1372 5.721960 TGGGCCCTAGTATTTAGAGATGATC 59.278 44.000 25.70 0.00 0.00 2.92
1305 1373 5.129650 GGGCCCTAGTATTTAGAGATGATCC 59.870 48.000 17.04 0.00 0.00 3.36
1306 1374 5.129650 GGCCCTAGTATTTAGAGATGATCCC 59.870 48.000 0.00 0.00 0.00 3.85
1307 1375 5.721960 GCCCTAGTATTTAGAGATGATCCCA 59.278 44.000 0.00 0.00 0.00 4.37
1308 1376 6.127196 GCCCTAGTATTTAGAGATGATCCCAG 60.127 46.154 0.00 0.00 0.00 4.45
1309 1377 6.957020 CCCTAGTATTTAGAGATGATCCCAGT 59.043 42.308 0.00 0.00 0.00 4.00
1310 1378 7.123547 CCCTAGTATTTAGAGATGATCCCAGTC 59.876 44.444 0.00 0.00 0.00 3.51
1311 1379 7.893302 CCTAGTATTTAGAGATGATCCCAGTCT 59.107 40.741 0.00 0.00 0.00 3.24
1312 1380 7.537596 AGTATTTAGAGATGATCCCAGTCTG 57.462 40.000 0.00 0.00 0.00 3.51
1313 1381 7.301420 AGTATTTAGAGATGATCCCAGTCTGA 58.699 38.462 0.00 0.00 0.00 3.27
1314 1382 7.955185 AGTATTTAGAGATGATCCCAGTCTGAT 59.045 37.037 0.00 0.00 0.00 2.90
1315 1383 6.662865 TTTAGAGATGATCCCAGTCTGATC 57.337 41.667 0.00 0.00 39.25 2.92
1316 1384 3.156293 AGAGATGATCCCAGTCTGATCG 58.844 50.000 0.00 0.00 41.22 3.69
1317 1385 2.890311 GAGATGATCCCAGTCTGATCGT 59.110 50.000 0.00 0.00 41.22 3.73
1318 1386 4.075682 GAGATGATCCCAGTCTGATCGTA 58.924 47.826 0.00 0.00 41.22 3.43
1319 1387 3.823873 AGATGATCCCAGTCTGATCGTAC 59.176 47.826 0.00 0.00 41.22 3.67
1320 1388 3.298686 TGATCCCAGTCTGATCGTACT 57.701 47.619 0.00 0.00 41.22 2.73
1321 1389 2.952310 TGATCCCAGTCTGATCGTACTG 59.048 50.000 16.53 16.53 41.22 2.74
1322 1390 2.509166 TCCCAGTCTGATCGTACTGT 57.491 50.000 19.98 0.00 41.25 3.55
1323 1391 2.803956 TCCCAGTCTGATCGTACTGTT 58.196 47.619 19.98 0.00 41.25 3.16
1324 1392 2.492088 TCCCAGTCTGATCGTACTGTTG 59.508 50.000 19.98 13.41 41.25 3.33
1325 1393 2.231478 CCCAGTCTGATCGTACTGTTGT 59.769 50.000 19.98 0.00 41.25 3.32
1326 1394 3.502920 CCAGTCTGATCGTACTGTTGTC 58.497 50.000 19.98 0.00 41.25 3.18
1327 1395 3.502920 CAGTCTGATCGTACTGTTGTCC 58.497 50.000 15.64 0.00 38.62 4.02
1328 1396 3.057526 CAGTCTGATCGTACTGTTGTCCA 60.058 47.826 15.64 0.00 38.62 4.02
1329 1397 3.572682 AGTCTGATCGTACTGTTGTCCAA 59.427 43.478 0.00 0.00 0.00 3.53
1330 1398 3.673809 GTCTGATCGTACTGTTGTCCAAC 59.326 47.826 3.21 3.21 41.50 3.77
1331 1399 2.661675 CTGATCGTACTGTTGTCCAACG 59.338 50.000 5.75 3.73 43.94 4.10
1332 1400 2.293955 TGATCGTACTGTTGTCCAACGA 59.706 45.455 4.02 4.02 45.44 3.85
1333 1401 2.410785 TCGTACTGTTGTCCAACGAG 57.589 50.000 5.75 6.81 43.94 4.18
1334 1402 1.948834 TCGTACTGTTGTCCAACGAGA 59.051 47.619 13.06 3.93 43.94 4.04
1335 1403 2.358582 TCGTACTGTTGTCCAACGAGAA 59.641 45.455 13.06 0.00 43.94 2.87
1336 1404 2.724690 CGTACTGTTGTCCAACGAGAAG 59.275 50.000 13.06 5.57 43.94 2.85
1337 1405 2.240493 ACTGTTGTCCAACGAGAAGG 57.760 50.000 13.06 0.00 43.94 3.46
1338 1406 0.868406 CTGTTGTCCAACGAGAAGGC 59.132 55.000 5.75 0.00 43.94 4.35
1339 1407 0.179234 TGTTGTCCAACGAGAAGGCA 59.821 50.000 5.75 0.00 43.94 4.75
1340 1408 1.202758 TGTTGTCCAACGAGAAGGCAT 60.203 47.619 5.75 0.00 43.94 4.40
1341 1409 1.464997 GTTGTCCAACGAGAAGGCATC 59.535 52.381 0.00 0.00 0.00 3.91
1342 1410 0.389817 TGTCCAACGAGAAGGCATCG 60.390 55.000 5.42 5.42 45.54 3.84
1347 1415 3.601981 CGAGAAGGCATCGTACGC 58.398 61.111 11.24 0.00 35.48 4.42
1348 1416 1.226575 CGAGAAGGCATCGTACGCA 60.227 57.895 11.24 0.00 35.48 5.24
1349 1417 1.202973 CGAGAAGGCATCGTACGCAG 61.203 60.000 11.24 6.40 35.48 5.18
1350 1418 0.100682 GAGAAGGCATCGTACGCAGA 59.899 55.000 11.24 0.00 0.00 4.26
1351 1419 0.101399 AGAAGGCATCGTACGCAGAG 59.899 55.000 11.24 1.01 0.00 3.35
1352 1420 0.179134 GAAGGCATCGTACGCAGAGT 60.179 55.000 11.24 0.00 0.00 3.24
1353 1421 1.065102 GAAGGCATCGTACGCAGAGTA 59.935 52.381 11.24 0.00 0.00 2.59
1354 1422 0.663688 AGGCATCGTACGCAGAGTAG 59.336 55.000 11.24 0.00 35.72 2.57
1355 1423 0.381089 GGCATCGTACGCAGAGTAGT 59.619 55.000 11.24 0.00 35.72 2.73
1356 1424 1.202268 GGCATCGTACGCAGAGTAGTT 60.202 52.381 11.24 0.00 35.72 2.24
1357 1425 2.527100 GCATCGTACGCAGAGTAGTTT 58.473 47.619 11.24 0.00 35.72 2.66
1358 1426 2.530700 GCATCGTACGCAGAGTAGTTTC 59.469 50.000 11.24 0.00 35.72 2.78
1359 1427 2.515641 TCGTACGCAGAGTAGTTTCG 57.484 50.000 11.24 0.00 35.72 3.46
1360 1428 1.800586 TCGTACGCAGAGTAGTTTCGT 59.199 47.619 11.24 0.00 35.72 3.85
1361 1429 2.993220 TCGTACGCAGAGTAGTTTCGTA 59.007 45.455 11.24 0.00 35.72 3.43
1362 1430 3.087124 CGTACGCAGAGTAGTTTCGTAC 58.913 50.000 0.52 11.69 46.73 3.67
1470 1538 1.590792 GCATGGGTACGTCGCCTAC 60.591 63.158 0.00 0.00 0.00 3.18
1484 1552 0.249657 GCCTACTCCTCCTTGCATCG 60.250 60.000 0.00 0.00 0.00 3.84
1485 1553 0.249657 CCTACTCCTCCTTGCATCGC 60.250 60.000 0.00 0.00 0.00 4.58
1487 1555 1.320344 TACTCCTCCTTGCATCGCGT 61.320 55.000 5.77 0.00 0.00 6.01
1505 1579 3.181575 CGCGTCAAATATGTCTGCGATTA 59.818 43.478 0.00 0.00 38.60 1.75
1506 1580 4.317769 CGCGTCAAATATGTCTGCGATTAA 60.318 41.667 0.00 0.00 38.60 1.40
1507 1581 5.612492 CGCGTCAAATATGTCTGCGATTAAT 60.612 40.000 0.00 0.00 38.60 1.40
1508 1582 6.399564 CGCGTCAAATATGTCTGCGATTAATA 60.400 38.462 0.00 0.00 38.60 0.98
1509 1583 7.287950 GCGTCAAATATGTCTGCGATTAATAA 58.712 34.615 0.00 0.00 0.00 1.40
1510 1584 7.475565 GCGTCAAATATGTCTGCGATTAATAAG 59.524 37.037 0.00 0.00 0.00 1.73
1511 1585 7.952101 CGTCAAATATGTCTGCGATTAATAAGG 59.048 37.037 0.00 0.00 0.00 2.69
1512 1586 8.988934 GTCAAATATGTCTGCGATTAATAAGGA 58.011 33.333 0.00 0.00 0.00 3.36
1513 1587 9.725019 TCAAATATGTCTGCGATTAATAAGGAT 57.275 29.630 0.00 0.00 0.00 3.24
1544 1799 8.453320 TGTAGTGTTCTTGCATGAGATAATTTG 58.547 33.333 0.00 0.00 0.00 2.32
1552 1807 6.151663 TGCATGAGATAATTTGAACCATGG 57.848 37.500 11.19 11.19 32.84 3.66
1556 1811 7.470981 GCATGAGATAATTTGAACCATGGACAT 60.471 37.037 21.47 3.64 32.84 3.06
1557 1812 9.070179 CATGAGATAATTTGAACCATGGACATA 57.930 33.333 21.47 13.19 0.00 2.29
1564 1845 2.779430 TGAACCATGGACATATCTGCCT 59.221 45.455 21.47 0.00 0.00 4.75
1585 1866 1.162698 ATATGCTTGCAGCCATAGCG 58.837 50.000 12.15 0.00 46.67 4.26
1659 1940 6.432581 AGACAAGTAAGAACTTTTTCCCCTT 58.567 36.000 0.00 0.00 43.60 3.95
1680 1961 6.239008 CCCTTGCCCAACATTATACACTTATG 60.239 42.308 0.00 0.00 0.00 1.90
1682 1963 5.445069 TGCCCAACATTATACACTTATGCT 58.555 37.500 0.00 0.00 0.00 3.79
1683 1964 6.596621 TGCCCAACATTATACACTTATGCTA 58.403 36.000 0.00 0.00 0.00 3.49
1684 1965 7.057264 TGCCCAACATTATACACTTATGCTAA 58.943 34.615 0.00 0.00 0.00 3.09
1686 1967 9.226606 GCCCAACATTATACACTTATGCTAATA 57.773 33.333 0.00 0.00 0.00 0.98
1710 1991 7.805083 AGTGATAGCATTATATTGAGACCCT 57.195 36.000 0.00 0.00 0.00 4.34
1711 1992 7.619050 AGTGATAGCATTATATTGAGACCCTG 58.381 38.462 0.00 0.00 0.00 4.45
1712 1993 6.314896 GTGATAGCATTATATTGAGACCCTGC 59.685 42.308 0.00 0.00 0.00 4.85
1716 1997 6.131961 AGCATTATATTGAGACCCTGCTTTT 58.868 36.000 0.00 0.00 35.31 2.27
1717 1998 6.608808 AGCATTATATTGAGACCCTGCTTTTT 59.391 34.615 0.00 0.00 35.31 1.94
1749 2030 7.177216 TGGCACAAACATTCTCTAATCAAGAAT 59.823 33.333 0.00 0.00 38.64 2.40
1767 2048 8.621532 TCAAGAATAATATGTGCAGGGATTAC 57.378 34.615 0.00 0.00 0.00 1.89
1837 2118 5.394553 CCAAAAGGCCAAGGTCAGAATAATC 60.395 44.000 5.01 0.00 0.00 1.75
2249 2561 6.856895 GGCAAGAGCTGATAATTTAAGTGTT 58.143 36.000 0.00 0.00 41.70 3.32
2250 2562 7.315890 GGCAAGAGCTGATAATTTAAGTGTTT 58.684 34.615 0.00 0.00 41.70 2.83
2251 2563 7.274250 GGCAAGAGCTGATAATTTAAGTGTTTG 59.726 37.037 0.00 0.00 41.70 2.93
2260 2572 8.792633 TGATAATTTAAGTGTTTGTCTGGAAGG 58.207 33.333 0.00 0.00 0.00 3.46
2266 2578 0.315251 GTTTGTCTGGAAGGCTTGCC 59.685 55.000 16.49 11.84 41.06 4.52
2268 2580 0.112995 TTGTCTGGAAGGCTTGCCAT 59.887 50.000 16.49 0.98 41.06 4.40
2292 2604 7.048629 TGAGTTGGCATCAAAATCAAAAGTA 57.951 32.000 0.00 0.00 34.28 2.24
2345 2657 9.474920 TCAAAATCAAAAGTCCATAACACAATC 57.525 29.630 0.00 0.00 0.00 2.67
2353 2665 6.560253 AGTCCATAACACAATCAACTGAAC 57.440 37.500 0.00 0.00 0.00 3.18
2359 2671 7.752239 CCATAACACAATCAACTGAACAAGATC 59.248 37.037 0.00 0.00 0.00 2.75
2363 2675 7.719483 ACACAATCAACTGAACAAGATCAATT 58.281 30.769 0.00 0.00 0.00 2.32
2365 2677 8.697067 CACAATCAACTGAACAAGATCAATTTC 58.303 33.333 0.00 0.00 0.00 2.17
2381 2693 4.571984 TCAATTTCGATGCCACTCATGTAG 59.428 41.667 0.00 0.00 35.05 2.74
2395 2707 6.820152 CCACTCATGTAGAATTTGATGTCTCA 59.180 38.462 0.00 0.00 0.00 3.27
2396 2708 7.201591 CCACTCATGTAGAATTTGATGTCTCAC 60.202 40.741 0.00 0.00 0.00 3.51
2421 2735 6.953743 CGAGTTAATTTCACTGGTTTCATACG 59.046 38.462 0.00 0.00 0.00 3.06
2425 2739 0.687920 TCACTGGTTTCATACGCCCA 59.312 50.000 0.00 0.00 0.00 5.36
2437 2751 3.886505 TCATACGCCCAAACAAAGACTTT 59.113 39.130 0.00 0.00 0.00 2.66
2438 2752 5.064558 TCATACGCCCAAACAAAGACTTTA 58.935 37.500 0.00 0.00 0.00 1.85
2439 2753 3.703286 ACGCCCAAACAAAGACTTTAC 57.297 42.857 0.00 0.00 0.00 2.01
2440 2754 2.032426 ACGCCCAAACAAAGACTTTACG 59.968 45.455 0.00 0.00 0.00 3.18
2442 2756 3.624900 GCCCAAACAAAGACTTTACGAC 58.375 45.455 0.00 0.00 0.00 4.34
2560 2878 8.621532 AAATCTTGTAGCAACAGTTATTGAGA 57.378 30.769 0.00 0.00 36.83 3.27
2574 2892 8.812972 ACAGTTATTGAGATTAGTCAGGTAACA 58.187 33.333 10.92 0.00 34.75 2.41
2585 2903 5.762179 AGTCAGGTAACATCATCCAAAGA 57.238 39.130 0.00 0.00 41.41 2.52
2588 2906 6.013379 AGTCAGGTAACATCATCCAAAGAAGA 60.013 38.462 0.00 0.00 41.41 2.87
2591 2909 5.014123 AGGTAACATCATCCAAAGAAGACCA 59.986 40.000 0.00 0.00 41.41 4.02
2592 2910 5.710099 GGTAACATCATCCAAAGAAGACCAA 59.290 40.000 0.00 0.00 0.00 3.67
2615 2933 4.497291 AAAGTTTACCCACTGTCTGTCA 57.503 40.909 0.00 0.00 0.00 3.58
2623 2941 1.202533 CCACTGTCTGTCACGAAACCT 60.203 52.381 0.00 0.00 0.00 3.50
2656 2980 1.905894 GGAAGGCCCTAGGATCAGATC 59.094 57.143 11.48 1.18 0.00 2.75
2680 3010 6.071616 TCCATAATAGGACCAGCAAACAAAAC 60.072 38.462 0.00 0.00 31.23 2.43
2695 3025 2.174854 ACAAAACTCAAGCCACTACCCT 59.825 45.455 0.00 0.00 0.00 4.34
2702 3032 3.947834 CTCAAGCCACTACCCTTTTATGG 59.052 47.826 0.00 0.00 0.00 2.74
2703 3033 3.589735 TCAAGCCACTACCCTTTTATGGA 59.410 43.478 0.00 0.00 31.69 3.41
2706 3036 2.092375 GCCACTACCCTTTTATGGAGCT 60.092 50.000 0.00 0.00 31.69 4.09
2708 3038 3.054361 CCACTACCCTTTTATGGAGCTGT 60.054 47.826 0.00 0.00 31.69 4.40
2726 3056 0.507358 GTTGTCGAGGAACGCTTCAC 59.493 55.000 0.00 0.00 42.26 3.18
2744 3074 3.165875 TCACTCGTCCTCTTCCTCAATT 58.834 45.455 0.00 0.00 0.00 2.32
2897 3227 6.128282 CGTGAAGCATGTTCTTGTATACCTTT 60.128 38.462 0.00 0.00 0.00 3.11
2927 3257 0.952497 CAGCTCCGACTTGCATGTGT 60.952 55.000 10.37 0.00 0.00 3.72
3010 3340 2.193536 GCAGGGTTGGAACGTTGCT 61.194 57.895 20.82 0.00 36.57 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.461961 GAGACATAGCCGTGCCTCTT 59.538 55.000 0.00 0.00 0.00 2.85
18 19 1.107538 TTCCTCGGGAGACATAGCCG 61.108 60.000 0.00 0.00 31.21 5.52
19 20 0.676736 CTTCCTCGGGAGACATAGCC 59.323 60.000 0.00 0.00 31.21 3.93
20 21 1.693627 TCTTCCTCGGGAGACATAGC 58.306 55.000 0.00 0.00 31.21 2.97
30 31 0.875059 GCACAGGTTTTCTTCCTCGG 59.125 55.000 0.00 0.00 32.37 4.63
39 40 0.738389 CTTGTGGACGCACAGGTTTT 59.262 50.000 0.00 0.00 36.35 2.43
43 44 0.532862 AGTTCTTGTGGACGCACAGG 60.533 55.000 0.00 0.00 36.35 4.00
68 69 2.084596 TCCTTCCGAGAGAGGGACA 58.915 57.895 0.00 0.00 45.46 4.02
106 107 2.935201 GCACAGTAATGCCTCTCTGAAG 59.065 50.000 0.00 0.00 39.86 3.02
132 133 0.729140 GGCACGGAATTGCTTTCGTG 60.729 55.000 13.65 13.65 42.56 4.35
133 134 0.889186 AGGCACGGAATTGCTTTCGT 60.889 50.000 0.00 0.00 42.56 3.85
135 136 1.168714 AGAGGCACGGAATTGCTTTC 58.831 50.000 0.00 0.00 42.56 2.62
140 141 3.733236 TCGTAGAGGCACGGAATTG 57.267 52.632 0.00 0.00 42.19 2.32
175 176 9.533253 AAACACATTATTTTTCTTTCTGTGAGG 57.467 29.630 6.76 0.00 36.79 3.86
195 199 3.211045 CCTCTCGGAAAGGAAAAACACA 58.789 45.455 0.00 0.00 35.83 3.72
233 239 3.244422 TGGAGGTACGAATTTGCTTCTGT 60.244 43.478 0.00 0.00 0.00 3.41
337 345 3.966979 TGAAGGCATGGATTTGCTTCTA 58.033 40.909 0.00 0.00 42.38 2.10
350 358 6.757947 CACGGATTTATTTTTCATGAAGGCAT 59.242 34.615 8.41 4.99 34.29 4.40
443 484 1.499007 TCCAGCCTCTTGGTTTTCCTT 59.501 47.619 0.00 0.00 41.38 3.36
465 527 9.599866 CTTTTAGATGACTTTTTCAGGGTTTTT 57.400 29.630 0.00 0.00 37.77 1.94
466 528 8.204160 CCTTTTAGATGACTTTTTCAGGGTTTT 58.796 33.333 0.00 0.00 37.77 2.43
467 529 7.686859 GCCTTTTAGATGACTTTTTCAGGGTTT 60.687 37.037 0.00 0.00 37.77 3.27
468 530 6.239317 GCCTTTTAGATGACTTTTTCAGGGTT 60.239 38.462 0.00 0.00 37.77 4.11
469 531 5.243954 GCCTTTTAGATGACTTTTTCAGGGT 59.756 40.000 0.00 0.00 37.77 4.34
470 532 5.243730 TGCCTTTTAGATGACTTTTTCAGGG 59.756 40.000 0.00 0.00 37.77 4.45
471 533 6.331369 TGCCTTTTAGATGACTTTTTCAGG 57.669 37.500 0.00 0.00 37.77 3.86
472 534 8.647143 TTTTGCCTTTTAGATGACTTTTTCAG 57.353 30.769 0.00 0.00 37.77 3.02
473 535 8.878769 GTTTTTGCCTTTTAGATGACTTTTTCA 58.121 29.630 0.00 0.00 39.11 2.69
474 536 8.055986 CGTTTTTGCCTTTTAGATGACTTTTTC 58.944 33.333 0.00 0.00 0.00 2.29
475 537 7.465379 GCGTTTTTGCCTTTTAGATGACTTTTT 60.465 33.333 0.00 0.00 0.00 1.94
476 538 6.019075 GCGTTTTTGCCTTTTAGATGACTTTT 60.019 34.615 0.00 0.00 0.00 2.27
492 554 7.942145 TTTATTTCTCTATACGCGTTTTTGC 57.058 32.000 20.78 0.00 0.00 3.68
525 587 8.431593 GCGCATTATGTGTTTTCTTTTGATTTA 58.568 29.630 0.30 0.00 0.00 1.40
531 593 4.381566 GTCGCGCATTATGTGTTTTCTTTT 59.618 37.500 8.75 0.00 0.00 2.27
532 594 3.911964 GTCGCGCATTATGTGTTTTCTTT 59.088 39.130 8.75 0.00 0.00 2.52
541 603 1.692148 CCACGTGTCGCGCATTATGT 61.692 55.000 15.65 0.50 46.11 2.29
542 604 1.012343 CCACGTGTCGCGCATTATG 60.012 57.895 15.65 0.00 46.11 1.90
578 640 1.741401 CTGGGAGCGCGTCATTTGA 60.741 57.895 8.43 0.00 0.00 2.69
632 694 4.523558 AGAACAACTAAGGAGCGAGTACTT 59.476 41.667 0.00 0.00 0.00 2.24
644 706 5.704053 ACCAAAATACGGGAGAACAACTAAG 59.296 40.000 0.00 0.00 0.00 2.18
650 712 4.283978 TCTGTACCAAAATACGGGAGAACA 59.716 41.667 0.00 0.00 33.01 3.18
689 751 3.261137 AGGAAGTCCGGACCTCTAAAAAG 59.739 47.826 30.82 0.00 42.08 2.27
743 808 9.490379 AATAGTTTACGAGTGTTTCTCTGAAAT 57.510 29.630 0.00 0.00 40.75 2.17
747 812 8.294341 TCAAATAGTTTACGAGTGTTTCTCTG 57.706 34.615 0.00 0.00 40.75 3.35
882 947 1.000612 AGGTCGGAGGGAGGAAGAC 59.999 63.158 0.00 0.00 0.00 3.01
896 961 2.435059 GGCTCGTGGCTTCAGGTC 60.435 66.667 3.50 0.00 41.46 3.85
993 1058 0.808453 CGTCGCCCGACATTGGTTAT 60.808 55.000 19.28 0.00 44.77 1.89
995 1060 2.740826 CGTCGCCCGACATTGGTT 60.741 61.111 19.28 0.00 44.77 3.67
1137 1205 8.822652 TCGACTCGTGAACAGATATAGTAATA 57.177 34.615 0.00 0.00 0.00 0.98
1139 1207 7.359014 CGATCGACTCGTGAACAGATATAGTAA 60.359 40.741 10.26 0.00 42.56 2.24
1140 1208 6.089150 CGATCGACTCGTGAACAGATATAGTA 59.911 42.308 10.26 0.00 42.56 1.82
1141 1209 5.107414 CGATCGACTCGTGAACAGATATAGT 60.107 44.000 10.26 0.00 42.56 2.12
1142 1210 5.309707 CGATCGACTCGTGAACAGATATAG 58.690 45.833 10.26 0.00 42.56 1.31
1171 1239 3.432051 GAGACCCACAGCCGATCGG 62.432 68.421 30.03 30.03 38.57 4.18
1182 1250 1.005867 GGCGTAACAACGAGACCCA 60.006 57.895 1.51 0.00 34.64 4.51
1198 1266 1.873591 CGTATAGCAAGGTTCCATGGC 59.126 52.381 6.96 0.00 0.00 4.40
1199 1267 3.194005 ACGTATAGCAAGGTTCCATGG 57.806 47.619 4.97 4.97 0.00 3.66
1200 1268 3.734231 CGTACGTATAGCAAGGTTCCATG 59.266 47.826 7.22 0.00 0.00 3.66
1201 1269 3.633525 TCGTACGTATAGCAAGGTTCCAT 59.366 43.478 16.05 0.00 0.00 3.41
1202 1270 3.016031 TCGTACGTATAGCAAGGTTCCA 58.984 45.455 16.05 0.00 0.00 3.53
1203 1271 3.698029 TCGTACGTATAGCAAGGTTCC 57.302 47.619 16.05 0.00 0.00 3.62
1204 1272 7.864307 ATTTATCGTACGTATAGCAAGGTTC 57.136 36.000 16.05 0.00 0.00 3.62
1205 1273 7.113965 CGAATTTATCGTACGTATAGCAAGGTT 59.886 37.037 16.05 0.00 46.52 3.50
1206 1274 6.580041 CGAATTTATCGTACGTATAGCAAGGT 59.420 38.462 16.05 0.00 46.52 3.50
1207 1275 6.964246 CGAATTTATCGTACGTATAGCAAGG 58.036 40.000 16.05 0.00 46.52 3.61
1232 1300 6.152154 TCTCTAATTGTATGGAGTGTTCGACA 59.848 38.462 0.00 0.00 0.00 4.35
1233 1301 6.472808 GTCTCTAATTGTATGGAGTGTTCGAC 59.527 42.308 0.00 0.00 0.00 4.20
1234 1302 6.152154 TGTCTCTAATTGTATGGAGTGTTCGA 59.848 38.462 0.00 0.00 0.00 3.71
1235 1303 6.330278 TGTCTCTAATTGTATGGAGTGTTCG 58.670 40.000 0.00 0.00 0.00 3.95
1236 1304 6.256757 GCTGTCTCTAATTGTATGGAGTGTTC 59.743 42.308 0.00 0.00 0.00 3.18
1237 1305 6.109359 GCTGTCTCTAATTGTATGGAGTGTT 58.891 40.000 0.00 0.00 0.00 3.32
1238 1306 5.395768 GGCTGTCTCTAATTGTATGGAGTGT 60.396 44.000 0.00 0.00 0.00 3.55
1239 1307 5.053145 GGCTGTCTCTAATTGTATGGAGTG 58.947 45.833 0.00 0.00 0.00 3.51
1240 1308 4.716784 TGGCTGTCTCTAATTGTATGGAGT 59.283 41.667 0.00 0.00 0.00 3.85
1241 1309 5.282055 TGGCTGTCTCTAATTGTATGGAG 57.718 43.478 0.00 0.00 0.00 3.86
1242 1310 5.894298 ATGGCTGTCTCTAATTGTATGGA 57.106 39.130 0.00 0.00 0.00 3.41
1243 1311 6.997655 TCTATGGCTGTCTCTAATTGTATGG 58.002 40.000 0.00 0.00 0.00 2.74
1244 1312 8.309656 TCATCTATGGCTGTCTCTAATTGTATG 58.690 37.037 0.00 0.00 0.00 2.39
1245 1313 8.427902 TCATCTATGGCTGTCTCTAATTGTAT 57.572 34.615 0.00 0.00 0.00 2.29
1246 1314 7.839680 TCATCTATGGCTGTCTCTAATTGTA 57.160 36.000 0.00 0.00 0.00 2.41
1247 1315 6.737720 TCATCTATGGCTGTCTCTAATTGT 57.262 37.500 0.00 0.00 0.00 2.71
1248 1316 7.876582 TGAATCATCTATGGCTGTCTCTAATTG 59.123 37.037 0.00 0.00 0.00 2.32
1249 1317 7.971201 TGAATCATCTATGGCTGTCTCTAATT 58.029 34.615 0.00 0.00 0.00 1.40
1250 1318 7.235193 ACTGAATCATCTATGGCTGTCTCTAAT 59.765 37.037 0.00 0.00 0.00 1.73
1251 1319 6.552725 ACTGAATCATCTATGGCTGTCTCTAA 59.447 38.462 0.00 0.00 0.00 2.10
1252 1320 6.073981 ACTGAATCATCTATGGCTGTCTCTA 58.926 40.000 0.00 0.00 0.00 2.43
1253 1321 4.900652 ACTGAATCATCTATGGCTGTCTCT 59.099 41.667 0.00 0.00 0.00 3.10
1254 1322 5.212532 ACTGAATCATCTATGGCTGTCTC 57.787 43.478 0.00 0.00 0.00 3.36
1255 1323 5.609423 GAACTGAATCATCTATGGCTGTCT 58.391 41.667 0.00 0.00 0.00 3.41
1256 1324 4.447054 CGAACTGAATCATCTATGGCTGTC 59.553 45.833 0.00 0.00 0.00 3.51
1257 1325 4.141846 ACGAACTGAATCATCTATGGCTGT 60.142 41.667 0.00 0.00 0.00 4.40
1258 1326 4.210746 CACGAACTGAATCATCTATGGCTG 59.789 45.833 0.00 0.00 0.00 4.85
1259 1327 4.375272 CACGAACTGAATCATCTATGGCT 58.625 43.478 0.00 0.00 0.00 4.75
1260 1328 3.496130 CCACGAACTGAATCATCTATGGC 59.504 47.826 0.00 0.00 0.00 4.40
1261 1329 4.060900 CCCACGAACTGAATCATCTATGG 58.939 47.826 0.00 0.00 0.00 2.74
1262 1330 3.496130 GCCCACGAACTGAATCATCTATG 59.504 47.826 0.00 0.00 0.00 2.23
1263 1331 3.495100 GGCCCACGAACTGAATCATCTAT 60.495 47.826 0.00 0.00 0.00 1.98
1264 1332 2.158957 GGCCCACGAACTGAATCATCTA 60.159 50.000 0.00 0.00 0.00 1.98
1265 1333 1.407437 GGCCCACGAACTGAATCATCT 60.407 52.381 0.00 0.00 0.00 2.90
1266 1334 1.017387 GGCCCACGAACTGAATCATC 58.983 55.000 0.00 0.00 0.00 2.92
1267 1335 0.394352 GGGCCCACGAACTGAATCAT 60.394 55.000 19.95 0.00 0.00 2.45
1268 1336 1.002624 GGGCCCACGAACTGAATCA 60.003 57.895 19.95 0.00 0.00 2.57
1269 1337 0.539986 TAGGGCCCACGAACTGAATC 59.460 55.000 27.56 0.00 0.00 2.52
1270 1338 0.541863 CTAGGGCCCACGAACTGAAT 59.458 55.000 27.56 0.25 0.00 2.57
1271 1339 0.834687 ACTAGGGCCCACGAACTGAA 60.835 55.000 27.56 0.00 0.00 3.02
1272 1340 0.040058 TACTAGGGCCCACGAACTGA 59.960 55.000 27.56 0.00 0.00 3.41
1273 1341 1.120530 ATACTAGGGCCCACGAACTG 58.879 55.000 27.56 7.80 0.00 3.16
1274 1342 1.875488 AATACTAGGGCCCACGAACT 58.125 50.000 27.56 3.89 0.00 3.01
1275 1343 2.704464 AAATACTAGGGCCCACGAAC 57.296 50.000 27.56 0.00 0.00 3.95
1276 1344 3.640029 CTCTAAATACTAGGGCCCACGAA 59.360 47.826 27.56 7.01 0.00 3.85
1277 1345 3.117398 TCTCTAAATACTAGGGCCCACGA 60.117 47.826 27.56 7.85 0.00 4.35
1278 1346 3.228453 TCTCTAAATACTAGGGCCCACG 58.772 50.000 27.56 17.10 0.00 4.94
1279 1347 4.838986 TCATCTCTAAATACTAGGGCCCAC 59.161 45.833 27.56 0.00 0.00 4.61
1280 1348 5.087923 TCATCTCTAAATACTAGGGCCCA 57.912 43.478 27.56 9.36 0.00 5.36
1281 1349 5.129650 GGATCATCTCTAAATACTAGGGCCC 59.870 48.000 16.46 16.46 0.00 5.80
1282 1350 5.129650 GGGATCATCTCTAAATACTAGGGCC 59.870 48.000 0.00 0.00 0.00 5.80
1283 1351 5.721960 TGGGATCATCTCTAAATACTAGGGC 59.278 44.000 0.00 0.00 0.00 5.19
1284 1352 6.957020 ACTGGGATCATCTCTAAATACTAGGG 59.043 42.308 0.00 0.00 0.00 3.53
1285 1353 7.893302 AGACTGGGATCATCTCTAAATACTAGG 59.107 40.741 0.00 0.00 0.00 3.02
1286 1354 8.739039 CAGACTGGGATCATCTCTAAATACTAG 58.261 40.741 0.00 0.00 0.00 2.57
1287 1355 8.448816 TCAGACTGGGATCATCTCTAAATACTA 58.551 37.037 1.81 0.00 0.00 1.82
1288 1356 7.301420 TCAGACTGGGATCATCTCTAAATACT 58.699 38.462 1.81 0.00 0.00 2.12
1289 1357 7.531857 TCAGACTGGGATCATCTCTAAATAC 57.468 40.000 1.81 0.00 0.00 1.89
1290 1358 7.121907 CGATCAGACTGGGATCATCTCTAAATA 59.878 40.741 1.81 0.00 40.93 1.40
1291 1359 6.071447 CGATCAGACTGGGATCATCTCTAAAT 60.071 42.308 1.81 0.00 40.93 1.40
1292 1360 5.242615 CGATCAGACTGGGATCATCTCTAAA 59.757 44.000 1.81 0.00 40.93 1.85
1293 1361 4.764308 CGATCAGACTGGGATCATCTCTAA 59.236 45.833 1.81 0.00 40.93 2.10
1294 1362 4.202514 ACGATCAGACTGGGATCATCTCTA 60.203 45.833 1.81 0.00 40.93 2.43
1295 1363 3.156293 CGATCAGACTGGGATCATCTCT 58.844 50.000 1.81 0.00 40.93 3.10
1296 1364 2.890311 ACGATCAGACTGGGATCATCTC 59.110 50.000 1.81 0.00 40.93 2.75
1297 1365 2.956132 ACGATCAGACTGGGATCATCT 58.044 47.619 1.81 0.00 40.93 2.90
1298 1366 3.823873 AGTACGATCAGACTGGGATCATC 59.176 47.826 1.81 0.00 40.93 2.92
1299 1367 3.571828 CAGTACGATCAGACTGGGATCAT 59.428 47.826 13.77 0.00 40.93 2.45
1300 1368 2.952310 CAGTACGATCAGACTGGGATCA 59.048 50.000 13.77 0.00 40.93 2.92
1301 1369 2.952978 ACAGTACGATCAGACTGGGATC 59.047 50.000 21.79 0.00 46.05 3.36
1302 1370 3.019799 ACAGTACGATCAGACTGGGAT 57.980 47.619 21.79 4.93 46.05 3.85
1303 1371 2.492088 CAACAGTACGATCAGACTGGGA 59.508 50.000 21.79 0.00 46.05 4.37
1304 1372 2.231478 ACAACAGTACGATCAGACTGGG 59.769 50.000 21.79 16.88 46.05 4.45
1305 1373 3.502920 GACAACAGTACGATCAGACTGG 58.497 50.000 21.79 11.53 46.05 4.00
1306 1374 3.057526 TGGACAACAGTACGATCAGACTG 60.058 47.826 18.12 18.12 46.95 3.51
1307 1375 3.154710 TGGACAACAGTACGATCAGACT 58.845 45.455 0.00 0.00 0.00 3.24
1308 1376 3.570926 TGGACAACAGTACGATCAGAC 57.429 47.619 0.00 0.00 0.00 3.51
1309 1377 3.610821 CGTTGGACAACAGTACGATCAGA 60.611 47.826 14.74 0.00 41.20 3.27
1310 1378 2.661675 CGTTGGACAACAGTACGATCAG 59.338 50.000 14.74 0.00 41.20 2.90
1311 1379 2.293955 TCGTTGGACAACAGTACGATCA 59.706 45.455 14.74 0.00 41.20 2.92
1312 1380 2.915463 CTCGTTGGACAACAGTACGATC 59.085 50.000 14.74 0.00 40.03 3.69
1313 1381 2.555325 TCTCGTTGGACAACAGTACGAT 59.445 45.455 14.74 0.00 40.03 3.73
1314 1382 1.948834 TCTCGTTGGACAACAGTACGA 59.051 47.619 14.74 6.09 41.20 3.43
1315 1383 2.410785 TCTCGTTGGACAACAGTACG 57.589 50.000 14.74 1.99 41.20 3.67
1316 1384 3.057734 CCTTCTCGTTGGACAACAGTAC 58.942 50.000 14.74 0.00 41.20 2.73
1317 1385 2.547218 GCCTTCTCGTTGGACAACAGTA 60.547 50.000 14.74 5.34 41.20 2.74
1318 1386 1.810412 GCCTTCTCGTTGGACAACAGT 60.810 52.381 14.74 0.00 41.20 3.55
1319 1387 0.868406 GCCTTCTCGTTGGACAACAG 59.132 55.000 14.74 10.79 41.20 3.16
1320 1388 0.179234 TGCCTTCTCGTTGGACAACA 59.821 50.000 14.74 2.46 41.20 3.33
1321 1389 1.464997 GATGCCTTCTCGTTGGACAAC 59.535 52.381 5.14 5.14 37.92 3.32
1322 1390 1.808411 GATGCCTTCTCGTTGGACAA 58.192 50.000 0.00 0.00 0.00 3.18
1323 1391 0.389817 CGATGCCTTCTCGTTGGACA 60.390 55.000 0.00 0.00 0.00 4.02
1324 1392 0.389948 ACGATGCCTTCTCGTTGGAC 60.390 55.000 0.00 0.00 46.49 4.02
1325 1393 1.135199 GTACGATGCCTTCTCGTTGGA 60.135 52.381 3.53 0.00 46.49 3.53
1326 1394 1.278238 GTACGATGCCTTCTCGTTGG 58.722 55.000 3.53 0.00 46.49 3.77
1327 1395 0.914551 CGTACGATGCCTTCTCGTTG 59.085 55.000 10.44 0.00 46.49 4.10
1328 1396 0.801067 GCGTACGATGCCTTCTCGTT 60.801 55.000 21.65 0.00 46.49 3.85
1330 1398 1.202973 CTGCGTACGATGCCTTCTCG 61.203 60.000 21.65 0.00 41.77 4.04
1331 1399 0.100682 TCTGCGTACGATGCCTTCTC 59.899 55.000 21.65 0.00 0.00 2.87
1332 1400 0.101399 CTCTGCGTACGATGCCTTCT 59.899 55.000 21.65 0.00 0.00 2.85
1333 1401 0.179134 ACTCTGCGTACGATGCCTTC 60.179 55.000 21.65 0.00 0.00 3.46
1334 1402 1.065701 CTACTCTGCGTACGATGCCTT 59.934 52.381 21.65 0.00 0.00 4.35
1335 1403 0.663688 CTACTCTGCGTACGATGCCT 59.336 55.000 21.65 0.00 0.00 4.75
1336 1404 0.381089 ACTACTCTGCGTACGATGCC 59.619 55.000 21.65 0.89 0.00 4.40
1337 1405 2.190325 AACTACTCTGCGTACGATGC 57.810 50.000 21.65 1.15 0.00 3.91
1338 1406 2.776765 CGAAACTACTCTGCGTACGATG 59.223 50.000 21.65 10.55 0.00 3.84
1339 1407 2.417933 ACGAAACTACTCTGCGTACGAT 59.582 45.455 21.65 0.40 32.94 3.73
1340 1408 1.800586 ACGAAACTACTCTGCGTACGA 59.199 47.619 21.65 3.19 32.94 3.43
1341 1409 2.238245 ACGAAACTACTCTGCGTACG 57.762 50.000 11.84 11.84 32.94 3.67
1343 1411 2.474526 GCGTACGAAACTACTCTGCGTA 60.475 50.000 21.65 0.00 36.51 4.42
1344 1412 1.727213 GCGTACGAAACTACTCTGCGT 60.727 52.381 21.65 0.00 38.81 5.24
1345 1413 0.905839 GCGTACGAAACTACTCTGCG 59.094 55.000 21.65 0.00 0.00 5.18
1346 1414 1.266466 GGCGTACGAAACTACTCTGC 58.734 55.000 21.65 0.00 0.00 4.26
1347 1415 2.624316 TGGCGTACGAAACTACTCTG 57.376 50.000 21.65 0.00 0.00 3.35
1348 1416 2.159282 CCATGGCGTACGAAACTACTCT 60.159 50.000 21.65 0.00 0.00 3.24
1349 1417 2.190981 CCATGGCGTACGAAACTACTC 58.809 52.381 21.65 0.00 0.00 2.59
1350 1418 1.738030 GCCATGGCGTACGAAACTACT 60.738 52.381 23.48 0.00 0.00 2.57
1351 1419 0.648958 GCCATGGCGTACGAAACTAC 59.351 55.000 23.48 0.00 0.00 2.73
1352 1420 0.460635 GGCCATGGCGTACGAAACTA 60.461 55.000 29.90 0.00 43.06 2.24
1353 1421 1.743995 GGCCATGGCGTACGAAACT 60.744 57.895 29.90 0.00 43.06 2.66
1354 1422 1.743995 AGGCCATGGCGTACGAAAC 60.744 57.895 29.79 13.48 43.06 2.78
1355 1423 1.743623 CAGGCCATGGCGTACGAAA 60.744 57.895 30.23 6.06 43.06 3.46
1356 1424 2.125310 CAGGCCATGGCGTACGAA 60.125 61.111 30.23 6.49 43.06 3.85
1357 1425 4.155733 CCAGGCCATGGCGTACGA 62.156 66.667 30.23 0.00 43.83 3.43
1470 1538 1.880340 GACGCGATGCAAGGAGGAG 60.880 63.158 15.93 0.00 0.00 3.69
1484 1552 3.592381 AATCGCAGACATATTTGACGC 57.408 42.857 0.00 0.00 42.51 5.19
1485 1553 7.952101 CCTTATTAATCGCAGACATATTTGACG 59.048 37.037 0.00 0.00 42.51 4.35
1487 1555 9.725019 ATCCTTATTAATCGCAGACATATTTGA 57.275 29.630 0.00 0.00 42.51 2.69
1508 1582 9.060347 CATGCAAGAACACTACATATAATCCTT 57.940 33.333 0.00 0.00 0.00 3.36
1509 1583 8.432013 TCATGCAAGAACACTACATATAATCCT 58.568 33.333 0.00 0.00 0.00 3.24
1510 1584 8.607441 TCATGCAAGAACACTACATATAATCC 57.393 34.615 0.00 0.00 0.00 3.01
1511 1585 9.481340 TCTCATGCAAGAACACTACATATAATC 57.519 33.333 0.00 0.00 0.00 1.75
1519 1748 8.668353 TCAAATTATCTCATGCAAGAACACTAC 58.332 33.333 0.00 0.00 0.00 2.73
1527 1756 6.700081 CCATGGTTCAAATTATCTCATGCAAG 59.300 38.462 2.57 0.00 31.91 4.01
1538 1793 6.265196 GGCAGATATGTCCATGGTTCAAATTA 59.735 38.462 12.58 3.30 0.00 1.40
1544 1799 3.498774 AGGCAGATATGTCCATGGTTC 57.501 47.619 12.58 7.17 0.00 3.62
1552 1807 5.645067 TGCAAGCATATTAGGCAGATATGTC 59.355 40.000 16.45 11.22 38.90 3.06
1597 1878 3.250762 TGTTTTTCAGAATCTCTGCCACG 59.749 43.478 0.00 0.00 43.95 4.94
1624 1905 8.935144 AAGTTCTTACTTGTCTCGAATGCGAAG 61.935 40.741 0.00 0.00 43.55 3.79
1659 1940 5.445069 AGCATAAGTGTATAATGTTGGGCA 58.555 37.500 0.00 0.00 0.00 5.36
1684 1965 9.499369 AGGGTCTCAATATAATGCTATCACTAT 57.501 33.333 0.00 0.00 0.00 2.12
1686 1967 7.619050 CAGGGTCTCAATATAATGCTATCACT 58.381 38.462 0.00 0.00 0.00 3.41
1688 1969 6.214208 AGCAGGGTCTCAATATAATGCTATCA 59.786 38.462 0.00 0.00 40.74 2.15
1689 1970 6.648192 AGCAGGGTCTCAATATAATGCTATC 58.352 40.000 0.00 0.00 40.74 2.08
1690 1971 6.633325 AGCAGGGTCTCAATATAATGCTAT 57.367 37.500 0.00 0.00 40.74 2.97
1692 1973 4.989875 AGCAGGGTCTCAATATAATGCT 57.010 40.909 0.00 0.00 37.91 3.79
1693 1974 6.396829 AAAAGCAGGGTCTCAATATAATGC 57.603 37.500 0.00 0.00 0.00 3.56
1718 1999 9.625747 TGATTAGAGAATGTTTGTGCCATATTA 57.374 29.630 0.00 0.00 0.00 0.98
1719 2000 8.523915 TGATTAGAGAATGTTTGTGCCATATT 57.476 30.769 0.00 0.00 0.00 1.28
1720 2001 8.523915 TTGATTAGAGAATGTTTGTGCCATAT 57.476 30.769 0.00 0.00 0.00 1.78
1721 2002 7.828717 TCTTGATTAGAGAATGTTTGTGCCATA 59.171 33.333 0.00 0.00 0.00 2.74
1722 2003 6.660521 TCTTGATTAGAGAATGTTTGTGCCAT 59.339 34.615 0.00 0.00 0.00 4.40
1724 2005 6.500684 TCTTGATTAGAGAATGTTTGTGCC 57.499 37.500 0.00 0.00 0.00 5.01
1742 2023 7.387673 CGTAATCCCTGCACATATTATTCTTGA 59.612 37.037 0.00 0.00 0.00 3.02
1749 2030 5.538849 TGTCGTAATCCCTGCACATATTA 57.461 39.130 0.00 0.00 0.00 0.98
1860 2141 9.241919 TCTGAATGATATCCTGCTAAAAACAAA 57.758 29.630 0.00 0.00 0.00 2.83
2049 2347 5.596836 ACAAAAGAAAACAGAAGCCATCA 57.403 34.783 0.00 0.00 0.00 3.07
2224 2536 5.065218 ACACTTAAATTATCAGCTCTTGCCG 59.935 40.000 0.00 0.00 40.80 5.69
2237 2549 6.775629 AGCCTTCCAGACAAACACTTAAATTA 59.224 34.615 0.00 0.00 0.00 1.40
2249 2561 0.112995 ATGGCAAGCCTTCCAGACAA 59.887 50.000 12.96 0.00 35.57 3.18
2250 2562 0.609957 CATGGCAAGCCTTCCAGACA 60.610 55.000 12.96 0.00 35.57 3.41
2251 2563 0.322816 TCATGGCAAGCCTTCCAGAC 60.323 55.000 12.96 0.00 35.57 3.51
2266 2578 6.425721 ACTTTTGATTTTGATGCCAACTCATG 59.574 34.615 0.00 0.00 30.88 3.07
2268 2580 5.916318 ACTTTTGATTTTGATGCCAACTCA 58.084 33.333 0.00 0.00 30.88 3.41
2280 2592 8.082242 GCAAGTCTGGTATGTACTTTTGATTTT 58.918 33.333 0.00 0.00 31.21 1.82
2292 2604 2.573462 ACTCATGGCAAGTCTGGTATGT 59.427 45.455 0.00 0.00 0.00 2.29
2345 2657 6.033196 GCATCGAAATTGATCTTGTTCAGTTG 59.967 38.462 0.00 0.07 0.00 3.16
2353 2665 4.095334 TGAGTGGCATCGAAATTGATCTTG 59.905 41.667 0.00 0.00 0.00 3.02
2359 2671 3.770263 ACATGAGTGGCATCGAAATTG 57.230 42.857 0.00 0.00 34.15 2.32
2363 2675 3.885724 TTCTACATGAGTGGCATCGAA 57.114 42.857 0.00 0.00 34.15 3.71
2365 2677 4.571984 TCAAATTCTACATGAGTGGCATCG 59.428 41.667 0.00 0.00 34.15 3.84
2381 2693 9.267096 GAAATTAACTCGTGAGACATCAAATTC 57.733 33.333 3.44 0.00 37.14 2.17
2395 2707 6.877611 ATGAAACCAGTGAAATTAACTCGT 57.122 33.333 0.00 0.00 0.00 4.18
2396 2708 6.953743 CGTATGAAACCAGTGAAATTAACTCG 59.046 38.462 0.00 0.00 0.00 4.18
2421 2735 3.065648 TGTCGTAAAGTCTTTGTTTGGGC 59.934 43.478 8.14 0.00 0.00 5.36
2425 2739 6.579666 GTGTGTTTGTCGTAAAGTCTTTGTTT 59.420 34.615 8.14 0.00 0.00 2.83
2437 2751 1.923899 TGAAGCGTGTGTTTGTCGTA 58.076 45.000 0.00 0.00 0.00 3.43
2438 2752 1.295792 ATGAAGCGTGTGTTTGTCGT 58.704 45.000 0.00 0.00 0.00 4.34
2439 2753 2.286125 TGAATGAAGCGTGTGTTTGTCG 60.286 45.455 0.00 0.00 0.00 4.35
2440 2754 3.332761 TGAATGAAGCGTGTGTTTGTC 57.667 42.857 0.00 0.00 0.00 3.18
2442 2756 2.406024 GCATGAATGAAGCGTGTGTTTG 59.594 45.455 0.00 0.00 0.00 2.93
2502 2820 3.435275 TGTAGTCTCAGCTTGACCTGAT 58.565 45.455 11.69 0.00 40.77 2.90
2508 2826 4.830046 ACTCTTTCTGTAGTCTCAGCTTGA 59.170 41.667 0.00 0.00 35.63 3.02
2560 2878 7.861629 TCTTTGGATGATGTTACCTGACTAAT 58.138 34.615 0.00 0.00 0.00 1.73
2592 2910 5.124936 GTGACAGACAGTGGGTAAACTTTTT 59.875 40.000 0.00 0.00 0.00 1.94
2601 2919 0.828022 TTTCGTGACAGACAGTGGGT 59.172 50.000 0.00 0.00 0.00 4.51
2605 2923 2.957006 ACTAGGTTTCGTGACAGACAGT 59.043 45.455 0.00 0.00 0.00 3.55
2611 2929 4.081862 CCCAAGATACTAGGTTTCGTGACA 60.082 45.833 0.00 0.00 28.76 3.58
2615 2933 3.705072 CCTCCCAAGATACTAGGTTTCGT 59.295 47.826 0.00 0.00 0.00 3.85
2623 2941 2.690840 GGCCTTCCTCCCAAGATACTA 58.309 52.381 0.00 0.00 0.00 1.82
2656 2980 5.913137 TTTGTTTGCTGGTCCTATTATGG 57.087 39.130 0.00 0.00 0.00 2.74
2667 2997 2.204237 GGCTTGAGTTTTGTTTGCTGG 58.796 47.619 0.00 0.00 0.00 4.85
2680 3010 3.947834 CCATAAAAGGGTAGTGGCTTGAG 59.052 47.826 0.00 0.00 0.00 3.02
2695 3025 3.007506 TCCTCGACAACAGCTCCATAAAA 59.992 43.478 0.00 0.00 0.00 1.52
2702 3032 1.618640 GCGTTCCTCGACAACAGCTC 61.619 60.000 3.93 0.00 42.86 4.09
2703 3033 1.664965 GCGTTCCTCGACAACAGCT 60.665 57.895 3.93 0.00 42.86 4.24
2706 3036 0.103390 TGAAGCGTTCCTCGACAACA 59.897 50.000 3.93 0.00 42.86 3.33
2708 3038 0.387929 AGTGAAGCGTTCCTCGACAA 59.612 50.000 0.00 0.00 42.86 3.18
2726 3056 4.993029 ACTAATTGAGGAAGAGGACGAG 57.007 45.455 0.00 0.00 0.00 4.18
2744 3074 5.073311 ACGAAGCTTGCAAGAAGATACTA 57.927 39.130 30.39 0.00 0.00 1.82
2957 3287 0.747283 CAGGAGCCATCTCAAGCACC 60.747 60.000 0.00 0.00 41.13 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.