Multiple sequence alignment - TraesCS1D01G116600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G116600 chr1D 100.000 6439 0 0 1 6439 112460917 112467355 0.000000e+00 11891.0
1 TraesCS1D01G116600 chr1D 86.111 72 7 2 3242 3312 349750713 349750644 2.490000e-09 75.0
2 TraesCS1D01G116600 chr1D 85.246 61 4 1 3252 3312 349748449 349748394 2.510000e-04 58.4
3 TraesCS1D01G116600 chr1A 95.577 2894 110 9 3080 5962 119705367 119708253 0.000000e+00 4619.0
4 TraesCS1D01G116600 chr1A 92.824 2160 75 24 482 2601 119703256 119705375 0.000000e+00 3057.0
5 TraesCS1D01G116600 chr1A 88.306 248 22 6 177 424 291238444 291238204 2.270000e-74 291.0
6 TraesCS1D01G116600 chr1A 94.180 189 10 1 2621 2808 15369548 15369360 2.940000e-73 287.0
7 TraesCS1D01G116600 chr1A 94.180 189 10 1 2621 2808 155072248 155072060 2.940000e-73 287.0
8 TraesCS1D01G116600 chr1A 79.369 412 65 14 3225 3636 566120259 566120650 8.230000e-69 272.0
9 TraesCS1D01G116600 chr1A 88.889 198 17 5 6246 6439 119708459 119708655 8.340000e-59 239.0
10 TraesCS1D01G116600 chr1A 82.686 283 22 5 482 745 119629396 119629670 6.500000e-55 226.0
11 TraesCS1D01G116600 chr1A 89.349 169 17 1 1 168 119629144 119629312 1.820000e-50 211.0
12 TraesCS1D01G116600 chr1A 95.161 62 3 0 106 167 119703112 119703173 1.480000e-16 99.0
13 TraesCS1D01G116600 chr1A 76.970 165 35 3 3766 3929 547319818 547319656 2.470000e-14 91.6
14 TraesCS1D01G116600 chr1A 95.833 48 0 2 427 472 119703174 119703221 6.920000e-10 76.8
15 TraesCS1D01G116600 chr1B 94.044 2955 116 36 3080 6019 172002896 172005805 0.000000e+00 4427.0
16 TraesCS1D01G116600 chr1B 92.314 1210 45 13 482 1659 172000972 172002165 0.000000e+00 1676.0
17 TraesCS1D01G116600 chr1B 95.270 740 28 7 1867 2601 172002167 172002904 0.000000e+00 1166.0
18 TraesCS1D01G116600 chr1B 84.656 378 32 11 6062 6439 172005809 172006160 2.860000e-93 353.0
19 TraesCS1D01G116600 chr1B 82.114 123 22 0 3220 3342 317842568 317842446 8.830000e-19 106.0
20 TraesCS1D01G116600 chr1B 95.238 42 2 0 3947 3988 82298999 82298958 4.170000e-07 67.6
21 TraesCS1D01G116600 chr1B 85.938 64 5 3 3253 3315 396845708 396845648 1.500000e-06 65.8
22 TraesCS1D01G116600 chr1B 92.857 42 3 0 3947 3988 32687729 32687688 1.940000e-05 62.1
23 TraesCS1D01G116600 chr1B 92.857 42 3 0 3947 3988 44017150 44017109 1.940000e-05 62.1
24 TraesCS1D01G116600 chr1B 92.857 42 3 0 3947 3988 52617362 52617321 1.940000e-05 62.1
25 TraesCS1D01G116600 chr1B 92.857 42 3 0 3947 3988 466781056 466781015 1.940000e-05 62.1
26 TraesCS1D01G116600 chr2D 81.654 665 99 12 4167 4828 57961719 57961075 1.230000e-146 531.0
27 TraesCS1D01G116600 chr2D 97.091 275 8 0 2812 3086 362257733 362258007 1.260000e-126 464.0
28 TraesCS1D01G116600 chr2D 79.915 473 70 16 4974 5440 58759222 58759675 2.240000e-84 324.0
29 TraesCS1D01G116600 chr2D 80.378 423 42 18 1240 1656 58755562 58755949 3.800000e-72 283.0
30 TraesCS1D01G116600 chr2D 79.703 404 40 16 1253 1656 57963732 57963371 2.980000e-63 254.0
31 TraesCS1D01G116600 chr2D 92.857 112 7 1 4345 4456 91801331 91801441 1.860000e-35 161.0
32 TraesCS1D01G116600 chr2D 91.964 112 8 1 4345 4456 105649187 105649077 8.640000e-34 156.0
33 TraesCS1D01G116600 chr2D 78.912 147 19 10 1721 1864 372185020 372185157 8.890000e-14 89.8
34 TraesCS1D01G116600 chr2B 81.686 617 97 10 4211 4825 91231670 91232272 3.470000e-137 499.0
35 TraesCS1D01G116600 chr2B 80.127 473 69 16 4974 5440 91233316 91233769 4.810000e-86 329.0
36 TraesCS1D01G116600 chr2B 86.667 270 29 4 164 432 339115886 339115623 6.310000e-75 292.0
37 TraesCS1D01G116600 chr2B 85.609 271 31 5 167 435 413085069 413084805 1.770000e-70 278.0
38 TraesCS1D01G116600 chr2B 85.621 153 20 2 1240 1392 91226497 91226647 6.680000e-35 159.0
39 TraesCS1D01G116600 chr2B 84.404 109 17 0 3234 3342 444507413 444507305 2.450000e-19 108.0
40 TraesCS1D01G116600 chr4D 97.445 274 7 0 2811 3084 349005328 349005055 9.780000e-128 468.0
41 TraesCS1D01G116600 chr4D 97.112 277 5 3 2810 3084 291949690 291949965 1.260000e-126 464.0
42 TraesCS1D01G116600 chr4D 94.149 188 10 1 2622 2808 472668628 472668815 1.060000e-72 285.0
43 TraesCS1D01G116600 chr4D 77.679 336 38 23 2044 2373 462629785 462630089 3.090000e-38 171.0
44 TraesCS1D01G116600 chr4D 79.537 259 36 12 2120 2373 461230278 461230524 1.110000e-37 169.0
45 TraesCS1D01G116600 chr4D 78.764 259 38 11 2120 2373 475143885 475144131 2.400000e-34 158.0
46 TraesCS1D01G116600 chr4D 97.222 36 1 0 3947 3982 461230521 461230556 1.940000e-05 62.1
47 TraesCS1D01G116600 chr4D 97.222 36 1 0 3947 3982 462630086 462630121 1.940000e-05 62.1
48 TraesCS1D01G116600 chr4D 97.222 36 1 0 3947 3982 475144128 475144163 1.940000e-05 62.1
49 TraesCS1D01G116600 chr3D 97.455 275 6 1 2811 3084 168497959 168498233 9.780000e-128 468.0
50 TraesCS1D01G116600 chr3D 77.679 336 36 25 2044 2373 459315140 459315442 1.110000e-37 169.0
51 TraesCS1D01G116600 chr3D 80.392 204 35 5 1664 1865 91675679 91675879 4.020000e-32 150.0
52 TraesCS1D01G116600 chr3D 82.558 172 25 4 1698 1866 231161572 231161403 5.200000e-31 147.0
53 TraesCS1D01G116600 chr3D 93.407 91 4 2 1285 1374 91225785 91225696 4.050000e-27 134.0
54 TraesCS1D01G116600 chr3D 95.000 40 2 0 3244 3283 590877140 590877101 5.390000e-06 63.9
55 TraesCS1D01G116600 chr3D 100.000 28 0 0 2601 2628 168496486 168496513 1.200000e-02 52.8
56 TraesCS1D01G116600 chr3B 97.091 275 6 2 2811 3084 424124919 424125192 4.550000e-126 462.0
57 TraesCS1D01G116600 chr3B 80.791 177 28 6 1690 1862 283599211 283599037 4.050000e-27 134.0
58 TraesCS1D01G116600 chr3B 92.308 91 5 2 1285 1374 140857530 140857441 1.880000e-25 128.0
59 TraesCS1D01G116600 chr3B 100.000 30 0 0 2599 2628 367840080 367840109 1.000000e-03 56.5
60 TraesCS1D01G116600 chr6D 96.751 277 8 1 2811 3087 146555027 146554752 1.640000e-125 460.0
61 TraesCS1D01G116600 chr6D 75.568 352 56 17 3225 3574 420940126 420939803 5.200000e-31 147.0
62 TraesCS1D01G116600 chr6D 82.424 165 25 4 3766 3929 315357484 315357323 2.420000e-29 141.0
63 TraesCS1D01G116600 chr6D 79.825 114 23 0 3737 3850 463218378 463218491 4.140000e-12 84.2
64 TraesCS1D01G116600 chr7B 96.364 275 10 0 2811 3085 356735505 356735779 2.740000e-123 453.0
65 TraesCS1D01G116600 chr7B 78.416 505 91 6 3226 3720 316477927 316477431 4.850000e-81 313.0
66 TraesCS1D01G116600 chr7B 78.624 407 72 12 4205 4605 502787776 502787379 8.280000e-64 255.0
67 TraesCS1D01G116600 chr7B 79.923 259 35 13 2120 2373 102778980 102778734 2.390000e-39 174.0
68 TraesCS1D01G116600 chr7B 92.857 112 7 1 4345 4456 610324922 610325032 1.860000e-35 161.0
69 TraesCS1D01G116600 chr7B 91.071 112 9 1 4345 4456 146977985 146978095 4.020000e-32 150.0
70 TraesCS1D01G116600 chr7B 88.506 87 8 2 3949 4034 317794518 317794433 3.180000e-18 104.0
71 TraesCS1D01G116600 chr7B 93.548 62 4 0 3252 3313 495023623 495023684 6.870000e-15 93.5
72 TraesCS1D01G116600 chr7B 77.143 140 29 3 3757 3894 637353390 637353528 1.920000e-10 78.7
73 TraesCS1D01G116600 chr7B 96.875 32 0 1 2597 2628 585509172 585509202 1.200000e-02 52.8
74 TraesCS1D01G116600 chr5A 95.439 285 11 2 2811 3095 643336599 643336317 2.740000e-123 453.0
75 TraesCS1D01G116600 chr5A 94.180 189 10 1 2621 2808 13520068 13519880 2.940000e-73 287.0
76 TraesCS1D01G116600 chr5A 75.269 372 58 22 3226 3593 308541015 308541356 5.200000e-31 147.0
77 TraesCS1D01G116600 chr3A 95.439 285 11 2 2811 3095 128573628 128573346 2.740000e-123 453.0
78 TraesCS1D01G116600 chr3A 86.194 268 30 6 167 433 723470695 723470434 3.800000e-72 283.0
79 TraesCS1D01G116600 chr3A 82.609 207 32 4 1662 1866 298154810 298155014 5.130000e-41 180.0
80 TraesCS1D01G116600 chr3A 80.392 204 35 5 1664 1865 107741165 107741365 4.020000e-32 150.0
81 TraesCS1D01G116600 chr3A 92.222 90 5 2 1286 1374 107404844 107404756 6.780000e-25 126.0
82 TraesCS1D01G116600 chr3A 100.000 28 0 0 2601 2628 663591000 663591027 1.200000e-02 52.8
83 TraesCS1D01G116600 chr7D 96.296 189 6 1 2621 2808 91048008 91048196 6.270000e-80 309.0
84 TraesCS1D01G116600 chr7D 79.661 236 37 7 4345 4575 22857702 22857473 6.680000e-35 159.0
85 TraesCS1D01G116600 chr7D 86.364 66 6 3 3252 3315 419407740 419407676 1.160000e-07 69.4
86 TraesCS1D01G116600 chr7D 100.000 28 0 0 2601 2628 599046472 599046499 1.200000e-02 52.8
87 TraesCS1D01G116600 chr2A 79.565 460 72 13 4974 5429 58863630 58863189 6.270000e-80 309.0
88 TraesCS1D01G116600 chr2A 87.121 264 27 6 163 425 500536463 500536206 6.310000e-75 292.0
89 TraesCS1D01G116600 chr2A 94.180 189 10 1 2621 2808 485761621 485761809 2.940000e-73 287.0
90 TraesCS1D01G116600 chr2A 88.764 178 18 2 1479 1656 58905669 58905494 3.910000e-52 217.0
91 TraesCS1D01G116600 chr2A 84.277 159 23 2 1240 1398 58905863 58905707 3.110000e-33 154.0
92 TraesCS1D01G116600 chr2A 79.439 107 9 6 1760 1865 753205070 753205164 5.390000e-06 63.9
93 TraesCS1D01G116600 chr7A 88.327 257 24 4 171 427 206757207 206757457 2.920000e-78 303.0
94 TraesCS1D01G116600 chr7A 88.031 259 25 4 166 424 595822967 595822715 1.050000e-77 302.0
95 TraesCS1D01G116600 chr7A 81.188 202 30 7 1667 1865 651655202 651655006 8.640000e-34 156.0
96 TraesCS1D01G116600 chr7A 85.321 109 13 1 3098 3203 92475665 92475773 6.830000e-20 110.0
97 TraesCS1D01G116600 chr6A 86.891 267 29 4 166 432 599623053 599623313 1.760000e-75 294.0
98 TraesCS1D01G116600 chr6A 93.651 189 11 1 2621 2808 364066743 364066931 1.370000e-71 281.0
99 TraesCS1D01G116600 chr5D 87.405 262 25 6 166 426 135656957 135656703 1.760000e-75 294.0
100 TraesCS1D01G116600 chr5D 93.651 189 11 1 2621 2808 173093014 173092826 1.370000e-71 281.0
101 TraesCS1D01G116600 chr5D 74.599 374 65 17 3225 3593 243077951 243077603 3.130000e-28 137.0
102 TraesCS1D01G116600 chr5D 77.128 188 33 8 3225 3404 505805981 505805796 4.110000e-17 100.0
103 TraesCS1D01G116600 chr5D 80.000 130 14 7 3236 3365 225586053 225585936 1.150000e-12 86.1
104 TraesCS1D01G116600 chr4A 94.180 189 10 1 2621 2808 89421052 89420864 2.940000e-73 287.0
105 TraesCS1D01G116600 chr4A 85.484 124 14 3 3080 3203 707867923 707868042 6.780000e-25 126.0
106 TraesCS1D01G116600 chr4A 83.051 118 20 0 3225 3342 641847010 641846893 2.450000e-19 108.0
107 TraesCS1D01G116600 chr4A 78.400 125 22 5 3080 3203 485716854 485716734 6.920000e-10 76.8
108 TraesCS1D01G116600 chr4B 79.167 336 35 19 2043 2373 617870910 617870605 3.940000e-47 200.0
109 TraesCS1D01G116600 chr4B 95.238 42 2 0 3947 3988 1075542 1075583 4.170000e-07 67.6
110 TraesCS1D01G116600 chr4B 95.238 42 2 0 3947 3988 97565195 97565154 4.170000e-07 67.6
111 TraesCS1D01G116600 chr4B 94.872 39 2 0 3944 3982 135231627 135231665 1.940000e-05 62.1
112 TraesCS1D01G116600 chr6B 80.695 259 33 6 2120 2373 33647222 33646976 1.100000e-42 185.0
113 TraesCS1D01G116600 chr6B 82.212 208 17 14 1662 1864 650926293 650926101 1.860000e-35 161.0
114 TraesCS1D01G116600 chr6B 100.000 36 0 0 3947 3982 372578922 372578957 4.170000e-07 67.6
115 TraesCS1D01G116600 chr6B 95.238 42 2 0 3947 3988 448372444 448372485 4.170000e-07 67.6
116 TraesCS1D01G116600 chr5B 78.042 337 37 24 2043 2373 703101406 703101101 1.840000e-40 178.0
117 TraesCS1D01G116600 chr5B 81.308 214 24 11 1662 1863 382897394 382897185 6.680000e-35 159.0
118 TraesCS1D01G116600 chr5B 76.415 212 46 3 3726 3936 410301150 410301358 1.900000e-20 111.0
119 TraesCS1D01G116600 chr5B 88.889 72 8 0 3234 3305 598981337 598981408 8.890000e-14 89.8
120 TraesCS1D01G116600 chr5B 95.238 42 2 0 3947 3988 31419937 31419896 4.170000e-07 67.6
121 TraesCS1D01G116600 chrUn 81.208 149 25 3 3747 3894 99836524 99836378 4.080000e-22 117.0
122 TraesCS1D01G116600 chrUn 97.222 36 1 0 3947 3982 47474853 47474888 1.940000e-05 62.1
123 TraesCS1D01G116600 chrUn 97.222 36 1 0 3947 3982 60643018 60642983 1.940000e-05 62.1
124 TraesCS1D01G116600 chrUn 92.857 42 3 0 3947 3988 431647064 431647023 1.940000e-05 62.1
125 TraesCS1D01G116600 chrUn 92.857 42 3 0 3947 3988 465884580 465884539 1.940000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G116600 chr1D 112460917 112467355 6438 False 11891.00 11891 100.0000 1 6439 1 chr1D.!!$F1 6438
1 TraesCS1D01G116600 chr1A 119703112 119708655 5543 False 1618.16 4619 93.6568 106 6439 5 chr1A.!!$F3 6333
2 TraesCS1D01G116600 chr1A 119629144 119629670 526 False 218.50 226 86.0175 1 745 2 chr1A.!!$F2 744
3 TraesCS1D01G116600 chr1B 172000972 172006160 5188 False 1905.50 4427 91.5710 482 6439 4 chr1B.!!$F1 5957
4 TraesCS1D01G116600 chr2D 57961075 57963732 2657 True 392.50 531 80.6785 1253 4828 2 chr2D.!!$R2 3575
5 TraesCS1D01G116600 chr2D 58755562 58759675 4113 False 303.50 324 80.1465 1240 5440 2 chr2D.!!$F4 4200
6 TraesCS1D01G116600 chr2B 91231670 91233769 2099 False 414.00 499 80.9065 4211 5440 2 chr2B.!!$F2 1229
7 TraesCS1D01G116600 chr3D 168496486 168498233 1747 False 260.40 468 98.7275 2601 3084 2 chr3D.!!$F3 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 230 0.178981 ATCCCGGCCATCAAATCAGG 60.179 55.000 2.24 0.00 0.00 3.86 F
231 233 0.394216 CCGGCCATCAAATCAGGTCA 60.394 55.000 2.24 0.00 0.00 4.02 F
498 525 0.459585 GCTCACGAACGGCCAGATTA 60.460 55.000 2.24 0.00 0.00 1.75 F
2463 3387 0.179145 CTCATAGGTTCGCGGACGTT 60.179 55.000 19.10 8.27 41.18 3.99 F
2658 4424 1.746239 CATGCATCTCCCGCACACA 60.746 57.895 0.00 0.00 43.35 3.72 F
3372 5563 0.462759 CCGGATCTGCCTTGTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46 F
4504 6716 1.396996 CACTTCCCCTTACGCATTTCG 59.603 52.381 0.00 0.00 45.38 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1608 1.628340 TGGAAGGTGGTGATGGTGTAG 59.372 52.381 0.00 0.0 0.00 2.74 R
1891 2807 5.066246 ACGTGTTACCGAAAAGGAAAATTCA 59.934 36.000 0.00 0.0 45.00 2.57 R
2478 3402 2.607750 GTGACCAGGCCCTCTCCA 60.608 66.667 0.00 0.0 0.00 3.86 R
3367 5558 0.032615 GAGCCAGAGGAGGAGGAAGA 60.033 60.000 0.00 0.0 0.00 2.87 R
3551 5742 1.281577 TCACCACCTATGCAATGCTCA 59.718 47.619 6.82 0.0 0.00 4.26 R
4898 8077 1.077429 GGCAAAGTCCAGCCCCTAG 60.077 63.158 0.00 0.0 45.18 3.02 R
6323 9510 1.064758 GGCCACCTGTCAATACCATCA 60.065 52.381 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.872388 GTTAGTTTCGGGGTGTGCAG 59.128 55.000 0.00 0.00 0.00 4.41
37 38 1.071385 GGTGTGCAGGGATCTCTATGG 59.929 57.143 0.00 0.00 0.00 2.74
43 44 2.708325 GCAGGGATCTCTATGGACCTTT 59.292 50.000 0.00 0.00 0.00 3.11
48 49 5.492524 AGGGATCTCTATGGACCTTTTTGAA 59.507 40.000 0.00 0.00 0.00 2.69
81 83 6.650120 TCCCTCTGTTCCATAACATAAGAAC 58.350 40.000 0.00 0.00 44.43 3.01
93 95 5.767816 AACATAAGAACGGTTTTCAAGCT 57.232 34.783 0.00 0.00 0.00 3.74
94 96 5.108385 ACATAAGAACGGTTTTCAAGCTG 57.892 39.130 0.00 0.00 0.00 4.24
103 105 3.487372 GGTTTTCAAGCTGTCTTAGGGT 58.513 45.455 0.00 0.00 0.00 4.34
124 126 5.187967 GGGTCCTCTCTTCATAGTTTTCAGA 59.812 44.000 0.00 0.00 0.00 3.27
163 165 4.185394 TGTTGATTAATGATACACGCGGT 58.815 39.130 12.47 8.38 0.00 5.68
168 170 7.112528 TGATTAATGATACACGCGGTTTATC 57.887 36.000 12.47 13.36 0.00 1.75
169 171 5.910637 TTAATGATACACGCGGTTTATCC 57.089 39.130 12.47 0.00 27.75 2.59
171 173 3.462483 TGATACACGCGGTTTATCCAT 57.538 42.857 12.47 0.00 35.57 3.41
173 175 4.300803 TGATACACGCGGTTTATCCATAC 58.699 43.478 12.47 0.00 35.57 2.39
174 176 1.944032 ACACGCGGTTTATCCATACC 58.056 50.000 12.47 0.00 35.57 2.73
175 177 1.207570 ACACGCGGTTTATCCATACCA 59.792 47.619 12.47 0.00 33.94 3.25
176 178 2.281517 CACGCGGTTTATCCATACCAA 58.718 47.619 12.47 0.00 33.94 3.67
177 179 2.875933 CACGCGGTTTATCCATACCAAT 59.124 45.455 12.47 0.00 33.94 3.16
178 180 4.059511 CACGCGGTTTATCCATACCAATA 58.940 43.478 12.47 0.00 33.94 1.90
179 181 4.693566 CACGCGGTTTATCCATACCAATAT 59.306 41.667 12.47 0.00 33.94 1.28
180 182 5.870433 CACGCGGTTTATCCATACCAATATA 59.130 40.000 12.47 0.00 33.94 0.86
181 183 6.369340 CACGCGGTTTATCCATACCAATATAA 59.631 38.462 12.47 0.00 33.94 0.98
182 184 6.935771 ACGCGGTTTATCCATACCAATATAAA 59.064 34.615 12.47 0.00 33.94 1.40
183 185 7.444792 ACGCGGTTTATCCATACCAATATAAAA 59.555 33.333 12.47 0.00 33.94 1.52
184 186 8.291032 CGCGGTTTATCCATACCAATATAAAAA 58.709 33.333 0.00 0.00 33.94 1.94
185 187 9.620660 GCGGTTTATCCATACCAATATAAAAAG 57.379 33.333 0.00 0.00 33.94 2.27
198 200 9.052365 ACCAATATAAAAAGATTTAAAGGGGCA 57.948 29.630 0.00 0.00 34.80 5.36
199 201 9.546428 CCAATATAAAAAGATTTAAAGGGGCAG 57.454 33.333 0.00 0.00 34.80 4.85
203 205 6.933514 AAAAAGATTTAAAGGGGCAGATCA 57.066 33.333 0.00 0.00 0.00 2.92
204 206 6.933514 AAAAGATTTAAAGGGGCAGATCAA 57.066 33.333 0.00 0.00 0.00 2.57
205 207 6.933514 AAAGATTTAAAGGGGCAGATCAAA 57.066 33.333 0.00 0.00 0.00 2.69
206 208 5.921962 AGATTTAAAGGGGCAGATCAAAC 57.078 39.130 0.00 0.00 0.00 2.93
207 209 5.332743 AGATTTAAAGGGGCAGATCAAACA 58.667 37.500 0.00 0.00 0.00 2.83
208 210 5.779771 AGATTTAAAGGGGCAGATCAAACAA 59.220 36.000 0.00 0.00 0.00 2.83
209 211 5.878406 TTTAAAGGGGCAGATCAAACAAA 57.122 34.783 0.00 0.00 0.00 2.83
210 212 6.432403 TTTAAAGGGGCAGATCAAACAAAT 57.568 33.333 0.00 0.00 0.00 2.32
211 213 4.541973 AAAGGGGCAGATCAAACAAATC 57.458 40.909 0.00 0.00 0.00 2.17
212 214 2.460669 AGGGGCAGATCAAACAAATCC 58.539 47.619 0.00 0.00 0.00 3.01
213 215 1.482182 GGGGCAGATCAAACAAATCCC 59.518 52.381 0.00 0.00 0.00 3.85
214 216 1.134946 GGGCAGATCAAACAAATCCCG 59.865 52.381 0.00 0.00 0.00 5.14
215 217 1.134946 GGCAGATCAAACAAATCCCGG 59.865 52.381 0.00 0.00 0.00 5.73
216 218 1.469767 GCAGATCAAACAAATCCCGGC 60.470 52.381 0.00 0.00 0.00 6.13
217 219 1.134946 CAGATCAAACAAATCCCGGCC 59.865 52.381 0.00 0.00 0.00 6.13
218 220 1.181786 GATCAAACAAATCCCGGCCA 58.818 50.000 2.24 0.00 0.00 5.36
219 221 1.756538 GATCAAACAAATCCCGGCCAT 59.243 47.619 2.24 0.00 0.00 4.40
220 222 1.181786 TCAAACAAATCCCGGCCATC 58.818 50.000 2.24 0.00 0.00 3.51
221 223 0.894141 CAAACAAATCCCGGCCATCA 59.106 50.000 2.24 0.00 0.00 3.07
222 224 1.274728 CAAACAAATCCCGGCCATCAA 59.725 47.619 2.24 0.00 0.00 2.57
223 225 1.638529 AACAAATCCCGGCCATCAAA 58.361 45.000 2.24 0.00 0.00 2.69
224 226 1.864669 ACAAATCCCGGCCATCAAAT 58.135 45.000 2.24 0.00 0.00 2.32
225 227 1.756538 ACAAATCCCGGCCATCAAATC 59.243 47.619 2.24 0.00 0.00 2.17
226 228 1.755959 CAAATCCCGGCCATCAAATCA 59.244 47.619 2.24 0.00 0.00 2.57
227 229 1.696063 AATCCCGGCCATCAAATCAG 58.304 50.000 2.24 0.00 0.00 2.90
228 230 0.178981 ATCCCGGCCATCAAATCAGG 60.179 55.000 2.24 0.00 0.00 3.86
229 231 1.076777 CCCGGCCATCAAATCAGGT 60.077 57.895 2.24 0.00 0.00 4.00
230 232 1.103398 CCCGGCCATCAAATCAGGTC 61.103 60.000 2.24 0.00 0.00 3.85
231 233 0.394216 CCGGCCATCAAATCAGGTCA 60.394 55.000 2.24 0.00 0.00 4.02
232 234 1.462616 CGGCCATCAAATCAGGTCAA 58.537 50.000 2.24 0.00 0.00 3.18
233 235 2.026641 CGGCCATCAAATCAGGTCAAT 58.973 47.619 2.24 0.00 0.00 2.57
234 236 2.033801 CGGCCATCAAATCAGGTCAATC 59.966 50.000 2.24 0.00 0.00 2.67
235 237 2.363359 GGCCATCAAATCAGGTCAATCC 59.637 50.000 0.00 0.00 0.00 3.01
236 238 2.033801 GCCATCAAATCAGGTCAATCCG 59.966 50.000 0.00 0.00 41.99 4.18
237 239 3.544684 CCATCAAATCAGGTCAATCCGA 58.455 45.455 0.00 0.00 41.99 4.55
238 240 3.313526 CCATCAAATCAGGTCAATCCGAC 59.686 47.826 0.00 0.00 44.57 4.79
239 241 2.616960 TCAAATCAGGTCAATCCGACG 58.383 47.619 0.00 0.00 46.42 5.12
240 242 2.232696 TCAAATCAGGTCAATCCGACGA 59.767 45.455 0.00 0.00 46.42 4.20
241 243 2.586258 AATCAGGTCAATCCGACGAG 57.414 50.000 0.00 0.00 46.42 4.18
242 244 1.475403 ATCAGGTCAATCCGACGAGT 58.525 50.000 0.00 0.00 46.42 4.18
243 245 0.809385 TCAGGTCAATCCGACGAGTC 59.191 55.000 0.00 0.00 46.42 3.36
244 246 0.526211 CAGGTCAATCCGACGAGTCA 59.474 55.000 0.00 0.00 46.42 3.41
245 247 0.811915 AGGTCAATCCGACGAGTCAG 59.188 55.000 0.00 0.00 46.42 3.51
246 248 0.802607 GGTCAATCCGACGAGTCAGC 60.803 60.000 0.00 0.00 46.42 4.26
247 249 0.802607 GTCAATCCGACGAGTCAGCC 60.803 60.000 0.00 0.00 34.19 4.85
248 250 0.965866 TCAATCCGACGAGTCAGCCT 60.966 55.000 0.00 0.00 0.00 4.58
249 251 0.803768 CAATCCGACGAGTCAGCCTG 60.804 60.000 0.00 0.00 0.00 4.85
250 252 2.564553 AATCCGACGAGTCAGCCTGC 62.565 60.000 0.00 0.00 0.00 4.85
251 253 3.753434 CCGACGAGTCAGCCTGCT 61.753 66.667 0.00 0.00 0.00 4.24
252 254 2.202544 CGACGAGTCAGCCTGCTC 60.203 66.667 4.02 6.20 0.00 4.26
253 255 2.695759 CGACGAGTCAGCCTGCTCT 61.696 63.158 12.25 2.63 0.00 4.09
254 256 1.369839 CGACGAGTCAGCCTGCTCTA 61.370 60.000 12.25 0.00 0.00 2.43
255 257 0.811915 GACGAGTCAGCCTGCTCTAA 59.188 55.000 12.25 0.00 0.00 2.10
256 258 1.407258 GACGAGTCAGCCTGCTCTAAT 59.593 52.381 12.25 1.42 0.00 1.73
257 259 1.135915 ACGAGTCAGCCTGCTCTAATG 59.864 52.381 12.25 2.59 0.00 1.90
258 260 1.406898 CGAGTCAGCCTGCTCTAATGA 59.593 52.381 12.25 0.00 0.00 2.57
259 261 2.035704 CGAGTCAGCCTGCTCTAATGAT 59.964 50.000 12.25 0.00 0.00 2.45
260 262 3.391965 GAGTCAGCCTGCTCTAATGATG 58.608 50.000 8.35 0.00 0.00 3.07
261 263 3.036819 AGTCAGCCTGCTCTAATGATGA 58.963 45.455 0.00 0.00 0.00 2.92
262 264 3.069872 AGTCAGCCTGCTCTAATGATGAG 59.930 47.826 0.00 0.00 34.87 2.90
268 270 2.145958 GCTCTAATGATGAGCGCTCA 57.854 50.000 39.63 39.63 45.73 4.26
269 271 2.477825 GCTCTAATGATGAGCGCTCAA 58.522 47.619 40.83 27.59 45.73 3.02
270 272 2.220593 GCTCTAATGATGAGCGCTCAAC 59.779 50.000 40.83 36.83 45.73 3.18
271 273 3.451526 CTCTAATGATGAGCGCTCAACA 58.548 45.455 40.56 40.56 44.50 3.33
272 274 3.190079 TCTAATGATGAGCGCTCAACAC 58.810 45.455 41.15 32.40 43.48 3.32
273 275 0.723414 AATGATGAGCGCTCAACACG 59.277 50.000 41.15 0.00 43.48 4.49
288 290 4.742274 ACGCTTCGTGTGCAGTTA 57.258 50.000 0.00 0.00 39.18 2.24
289 291 2.980562 ACGCTTCGTGTGCAGTTAA 58.019 47.368 0.00 0.00 39.18 2.01
290 292 1.508632 ACGCTTCGTGTGCAGTTAAT 58.491 45.000 0.00 0.00 39.18 1.40
291 293 2.679450 ACGCTTCGTGTGCAGTTAATA 58.321 42.857 0.00 0.00 39.18 0.98
292 294 3.259064 ACGCTTCGTGTGCAGTTAATAT 58.741 40.909 0.00 0.00 39.18 1.28
293 295 4.426416 ACGCTTCGTGTGCAGTTAATATA 58.574 39.130 0.00 0.00 39.18 0.86
294 296 4.865925 ACGCTTCGTGTGCAGTTAATATAA 59.134 37.500 0.00 0.00 39.18 0.98
295 297 5.522460 ACGCTTCGTGTGCAGTTAATATAAT 59.478 36.000 0.00 0.00 39.18 1.28
296 298 6.698329 ACGCTTCGTGTGCAGTTAATATAATA 59.302 34.615 0.00 0.00 39.18 0.98
297 299 7.384115 ACGCTTCGTGTGCAGTTAATATAATAT 59.616 33.333 0.00 0.00 39.18 1.28
298 300 7.893236 CGCTTCGTGTGCAGTTAATATAATATC 59.107 37.037 0.00 0.00 0.00 1.63
299 301 8.708742 GCTTCGTGTGCAGTTAATATAATATCA 58.291 33.333 0.00 0.00 0.00 2.15
401 403 5.657826 TTACCTAGTAATACCAACGTGCA 57.342 39.130 0.00 0.00 0.00 4.57
402 404 4.540359 ACCTAGTAATACCAACGTGCAA 57.460 40.909 0.00 0.00 0.00 4.08
403 405 5.093849 ACCTAGTAATACCAACGTGCAAT 57.906 39.130 0.00 0.00 0.00 3.56
404 406 4.873827 ACCTAGTAATACCAACGTGCAATG 59.126 41.667 0.00 0.00 0.00 2.82
405 407 3.757745 AGTAATACCAACGTGCAATGC 57.242 42.857 0.00 0.00 0.00 3.56
406 408 3.078097 AGTAATACCAACGTGCAATGCA 58.922 40.909 2.72 2.72 35.60 3.96
419 421 4.693538 TGCAATGCACGTACACATTTAT 57.306 36.364 2.72 0.00 34.32 1.40
420 422 5.053140 TGCAATGCACGTACACATTTATT 57.947 34.783 2.72 0.00 34.32 1.40
421 423 6.183309 TGCAATGCACGTACACATTTATTA 57.817 33.333 2.72 0.00 34.32 0.98
422 424 6.254480 TGCAATGCACGTACACATTTATTAG 58.746 36.000 2.72 0.18 34.32 1.73
423 425 6.128145 TGCAATGCACGTACACATTTATTAGT 60.128 34.615 2.72 0.00 34.32 2.24
424 426 7.064728 TGCAATGCACGTACACATTTATTAGTA 59.935 33.333 2.72 0.00 34.32 1.82
425 427 8.067784 GCAATGCACGTACACATTTATTAGTAT 58.932 33.333 0.00 0.00 34.32 2.12
472 474 1.199097 GTGGACGAAAACATGCGGAAT 59.801 47.619 0.00 0.00 0.00 3.01
475 477 2.933906 GGACGAAAACATGCGGAATAGA 59.066 45.455 0.00 0.00 0.00 1.98
476 478 3.242316 GGACGAAAACATGCGGAATAGAC 60.242 47.826 0.00 0.00 0.00 2.59
478 480 3.938963 ACGAAAACATGCGGAATAGACAT 59.061 39.130 0.00 0.00 0.00 3.06
480 507 3.698029 AAACATGCGGAATAGACATGC 57.302 42.857 0.00 0.00 43.96 4.06
498 525 0.459585 GCTCACGAACGGCCAGATTA 60.460 55.000 2.24 0.00 0.00 1.75
595 623 1.342796 GAGAAAACCGGAGCGACGAC 61.343 60.000 9.46 0.00 35.47 4.34
651 679 4.555709 TTCCGCACCCGCACAAGT 62.556 61.111 0.00 0.00 38.40 3.16
934 986 1.949631 GTAGATTTCCTCGCCGCGG 60.950 63.158 24.05 24.05 0.00 6.46
987 1039 1.228800 AAGAACCGGACGGAGGAGT 60.229 57.895 18.80 0.00 38.96 3.85
1031 1083 2.490685 GGCGTCCTCCTCGTCTTC 59.509 66.667 0.00 0.00 0.00 2.87
1032 1084 2.100603 GCGTCCTCCTCGTCTTCG 59.899 66.667 0.00 0.00 38.55 3.79
1072 1133 2.941583 GTTGCCCCTCCCCTTCCT 60.942 66.667 0.00 0.00 0.00 3.36
1075 1136 2.941583 GCCCCTCCCCTTCCTTGT 60.942 66.667 0.00 0.00 0.00 3.16
1398 1468 6.700081 TCAGTCCTAATCGACATTTATTTCCG 59.300 38.462 0.00 0.00 35.07 4.30
1484 1564 3.692593 CCTTTGCATGTGACTGATGATGA 59.307 43.478 0.00 0.00 0.00 2.92
1485 1565 4.338400 CCTTTGCATGTGACTGATGATGAT 59.662 41.667 0.00 0.00 0.00 2.45
1486 1566 5.163550 CCTTTGCATGTGACTGATGATGATT 60.164 40.000 0.00 0.00 0.00 2.57
1487 1567 4.893424 TGCATGTGACTGATGATGATTG 57.107 40.909 0.00 0.00 0.00 2.67
1488 1568 4.519213 TGCATGTGACTGATGATGATTGA 58.481 39.130 0.00 0.00 0.00 2.57
1489 1569 5.130350 TGCATGTGACTGATGATGATTGAT 58.870 37.500 0.00 0.00 0.00 2.57
1490 1570 5.008613 TGCATGTGACTGATGATGATTGATG 59.991 40.000 0.00 0.00 0.00 3.07
1528 1608 1.979155 GAAAGCAGTGCCCTTCCCC 60.979 63.158 12.58 0.00 0.00 4.81
1679 1768 4.571372 TTACCCTTAAAAGTTTGCACGG 57.429 40.909 0.00 0.00 0.00 4.94
1682 1771 3.254903 ACCCTTAAAAGTTTGCACGGATC 59.745 43.478 0.00 0.00 0.00 3.36
1688 1777 7.650104 CCTTAAAAGTTTGCACGGATCTTAAAA 59.350 33.333 0.00 0.00 0.00 1.52
1730 2642 3.438087 CCATATTAGCCGGCAGATCAAAG 59.562 47.826 31.54 10.91 0.00 2.77
1731 2643 1.312815 ATTAGCCGGCAGATCAAAGC 58.687 50.000 31.54 0.00 0.00 3.51
1847 2763 3.263425 TCTGTAAGCTTTTCTAGGGGGTG 59.737 47.826 3.20 0.00 0.00 4.61
2187 3109 4.693566 GTCCGTCCTGACAAATGAAATGTA 59.306 41.667 0.00 0.00 35.29 2.29
2194 3116 7.591426 GTCCTGACAAATGAAATGTACAGAAAC 59.409 37.037 0.33 0.00 32.51 2.78
2249 3171 1.807142 GCAGACACCTTCTTTACTGGC 59.193 52.381 0.00 0.00 28.96 4.85
2453 3377 1.912862 AATCCAGCCCCTCATAGGTT 58.087 50.000 0.00 0.00 31.93 3.50
2462 3386 1.432251 CTCATAGGTTCGCGGACGT 59.568 57.895 17.92 17.92 41.18 4.34
2463 3387 0.179145 CTCATAGGTTCGCGGACGTT 60.179 55.000 19.10 8.27 41.18 3.99
2538 3462 4.270325 GCAACCGAGTACCTCAAATATCAC 59.730 45.833 0.00 0.00 0.00 3.06
2558 3482 6.560003 TCACACCTCAAATCCATACTACAT 57.440 37.500 0.00 0.00 0.00 2.29
2561 3485 8.367911 TCACACCTCAAATCCATACTACATATC 58.632 37.037 0.00 0.00 0.00 1.63
2578 3502 5.001232 ACATATCCAACACAAAAGCTACGT 58.999 37.500 0.00 0.00 0.00 3.57
2658 4424 1.746239 CATGCATCTCCCGCACACA 60.746 57.895 0.00 0.00 43.35 3.72
2724 4490 4.047059 CGACACGTGGCGGGTAGT 62.047 66.667 35.70 2.75 46.20 2.73
2770 4536 1.815421 CGGCGGGAACTTGATCTGG 60.815 63.158 0.00 0.00 0.00 3.86
2782 4548 2.827715 GATCTGGTGGATCGGGACT 58.172 57.895 0.00 0.00 40.99 3.85
2944 5131 8.313292 GCTTGATTAGATTGATACATCTCCTCT 58.687 37.037 0.00 0.00 0.00 3.69
2946 5133 9.599056 TTGATTAGATTGATACATCTCCTCTCT 57.401 33.333 0.00 0.00 0.00 3.10
2974 5161 3.858135 AGAGAGGTTTACTTGACTCCCA 58.142 45.455 0.00 0.00 0.00 4.37
3045 5232 4.141065 ACCCTAAGACTAACGGGCTATACT 60.141 45.833 0.00 0.00 40.45 2.12
3084 5272 3.131755 AGGCCCATTACGTACTCTAACAC 59.868 47.826 0.00 0.00 0.00 3.32
3085 5273 3.451526 GCCCATTACGTACTCTAACACC 58.548 50.000 0.00 0.00 0.00 4.16
3086 5274 3.131755 GCCCATTACGTACTCTAACACCT 59.868 47.826 0.00 0.00 0.00 4.00
3087 5275 4.339247 GCCCATTACGTACTCTAACACCTA 59.661 45.833 0.00 0.00 0.00 3.08
3088 5276 5.506982 GCCCATTACGTACTCTAACACCTAG 60.507 48.000 0.00 0.00 0.00 3.02
3101 5289 6.729428 TCTAACACCTAGCCTACTTCTACTT 58.271 40.000 0.00 0.00 0.00 2.24
3102 5290 5.662674 AACACCTAGCCTACTTCTACTTG 57.337 43.478 0.00 0.00 0.00 3.16
3119 5307 4.688511 ACTTGTCGTCAGAGATGTAGAC 57.311 45.455 0.00 0.00 0.00 2.59
3208 5396 2.675423 CGTCGGACTCCACCTCCA 60.675 66.667 6.57 0.00 0.00 3.86
3218 5409 2.833913 CCACCTCCACCTGTGCCTT 61.834 63.158 0.00 0.00 0.00 4.35
3232 5423 3.373565 CCTTGCGGAGGTTTGCCC 61.374 66.667 0.00 0.00 40.95 5.36
3240 5431 2.452491 AGGTTTGCCCCCACCTCT 60.452 61.111 0.00 0.00 39.37 3.69
3365 5556 3.011517 AGGTGCCGGATCTGCCTT 61.012 61.111 5.05 0.00 0.00 4.35
3367 5558 2.045926 GTGCCGGATCTGCCTTGT 60.046 61.111 5.05 0.00 0.00 3.16
3370 5561 1.078143 GCCGGATCTGCCTTGTCTT 60.078 57.895 5.05 0.00 0.00 3.01
3371 5562 1.092345 GCCGGATCTGCCTTGTCTTC 61.092 60.000 5.05 0.00 0.00 2.87
3372 5563 0.462759 CCGGATCTGCCTTGTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
3601 5792 2.831770 CCATGGCTACAGGCGGAT 59.168 61.111 0.00 0.00 44.42 4.18
3793 5984 3.425162 CCCTAGATTTGGGCTGGATAC 57.575 52.381 0.00 0.00 37.99 2.24
3929 6120 2.043664 AGGAGCCCAGCTATAGATGCTA 59.956 50.000 12.62 0.00 39.88 3.49
3997 6193 6.095580 CAGTCAAGCTTATCACTACCACTCTA 59.904 42.308 0.00 0.00 0.00 2.43
4244 6446 5.654650 TCCAAAACATTGGTTGTACTTCAGT 59.345 36.000 7.42 0.00 42.62 3.41
4298 6500 4.776435 TTGAGAACCATCTGCCATCATA 57.224 40.909 0.00 0.00 35.54 2.15
4504 6716 1.396996 CACTTCCCCTTACGCATTTCG 59.603 52.381 0.00 0.00 45.38 3.46
4623 6835 4.319766 GCATCAAGTTTAGCCCATCATACG 60.320 45.833 0.00 0.00 0.00 3.06
4880 8059 4.072839 GAGGTTCTACAAAGGTTCCAAGG 58.927 47.826 0.00 0.00 0.00 3.61
4898 8077 5.105310 TCCAAGGATTGTCACTTAGTAGCTC 60.105 44.000 0.00 0.00 46.99 4.09
5006 8185 5.480642 AGATGAGTGGTCCTGCATAATAG 57.519 43.478 0.00 0.00 0.00 1.73
5016 8195 6.006449 GGTCCTGCATAATAGGTTTCATGAT 58.994 40.000 0.00 0.00 36.67 2.45
5095 8274 7.093771 ACCATGAGTTCTATTCAATTTTGTCCC 60.094 37.037 0.00 0.00 0.00 4.46
5213 8393 4.634004 TCTGTCAAACGAGTTGTTGTCATT 59.366 37.500 0.00 0.00 40.84 2.57
5261 8441 7.615365 AGAACTCCAATTTCACCTATAAATGCA 59.385 33.333 0.00 0.00 0.00 3.96
5321 8501 7.284489 ACCAGCAAGTTCTAACAATTCACTTTA 59.716 33.333 0.00 0.00 0.00 1.85
5323 8503 9.515020 CAGCAAGTTCTAACAATTCACTTTAAA 57.485 29.630 0.00 0.00 0.00 1.52
5405 8587 6.014840 TCGGTGTTTTCCTGTACTCTAGATTT 60.015 38.462 0.00 0.00 0.00 2.17
5504 8686 2.092323 GGGGAATGTACTGCTTTCACC 58.908 52.381 0.00 0.00 44.26 4.02
5506 8688 2.614481 GGGAATGTACTGCTTTCACCGA 60.614 50.000 0.00 0.00 34.16 4.69
5614 8796 1.507140 TCTGAAGGTTGTGGTGGACT 58.493 50.000 0.00 0.00 0.00 3.85
5822 9004 5.102953 TGCATTATTGGTCAGCTTCTAGT 57.897 39.130 0.00 0.00 0.00 2.57
5829 9011 9.686683 ATTATTGGTCAGCTTCTAGTACATTTT 57.313 29.630 0.00 0.00 0.00 1.82
5830 9012 9.515226 TTATTGGTCAGCTTCTAGTACATTTTT 57.485 29.630 0.00 0.00 0.00 1.94
5831 9013 7.435068 TTGGTCAGCTTCTAGTACATTTTTC 57.565 36.000 0.00 0.00 0.00 2.29
5962 9146 7.892609 AGGGGTAGTGTTATCATTTGAAAAAC 58.107 34.615 0.00 3.47 0.00 2.43
5963 9147 7.039293 AGGGGTAGTGTTATCATTTGAAAAACC 60.039 37.037 6.67 0.00 0.00 3.27
5966 9150 8.974408 GGTAGTGTTATCATTTGAAAAACCAAC 58.026 33.333 6.67 0.00 0.00 3.77
5967 9151 9.522804 GTAGTGTTATCATTTGAAAAACCAACA 57.477 29.630 6.67 0.00 0.00 3.33
5968 9152 8.647143 AGTGTTATCATTTGAAAAACCAACAG 57.353 30.769 6.67 0.00 0.00 3.16
5985 9169 7.540474 ACCAACAGATCTAGTTTCTGAACTA 57.460 36.000 23.36 0.00 44.13 2.24
5987 9171 7.233757 ACCAACAGATCTAGTTTCTGAACTACT 59.766 37.037 23.36 0.89 44.13 2.57
6021 9205 5.990386 CCTGAAGATCACTATCAGTGGAATG 59.010 44.000 6.48 0.00 45.94 2.67
6022 9206 6.183360 CCTGAAGATCACTATCAGTGGAATGA 60.183 42.308 6.48 0.00 45.94 2.57
6060 9245 8.986477 AATGGAAAACAAAAATTCGAGATAGG 57.014 30.769 0.00 0.00 0.00 2.57
6074 9259 8.627208 ATTCGAGATAGGTTAATCATTTGCAT 57.373 30.769 0.00 0.00 0.00 3.96
6097 9282 2.295909 TGCATGTGTGGTTTCCTTTAGC 59.704 45.455 0.00 0.00 0.00 3.09
6167 9352 4.024048 TGTTCGAGATTGCCTTTTCACTTC 60.024 41.667 0.00 0.00 0.00 3.01
6180 9365 6.015434 GCCTTTTCACTTCTGAGGGAATTTTA 60.015 38.462 0.00 0.00 44.46 1.52
6195 9380 9.639601 GAGGGAATTTTATTCACTACAAAAAGG 57.360 33.333 4.26 0.00 31.22 3.11
6196 9381 8.094548 AGGGAATTTTATTCACTACAAAAAGGC 58.905 33.333 2.44 0.00 28.83 4.35
6197 9382 7.333423 GGGAATTTTATTCACTACAAAAAGGCC 59.667 37.037 0.00 0.00 0.00 5.19
6198 9383 7.062956 GGAATTTTATTCACTACAAAAAGGCCG 59.937 37.037 0.00 0.00 0.00 6.13
6199 9384 5.379732 TTTATTCACTACAAAAAGGCCGG 57.620 39.130 0.00 0.00 0.00 6.13
6200 9385 2.351706 TTCACTACAAAAAGGCCGGT 57.648 45.000 1.90 0.00 0.00 5.28
6201 9386 3.488778 TTCACTACAAAAAGGCCGGTA 57.511 42.857 1.90 0.00 0.00 4.02
6202 9387 3.488778 TCACTACAAAAAGGCCGGTAA 57.511 42.857 1.90 0.00 0.00 2.85
6203 9388 4.023726 TCACTACAAAAAGGCCGGTAAT 57.976 40.909 1.90 0.00 0.00 1.89
6204 9389 3.754323 TCACTACAAAAAGGCCGGTAATG 59.246 43.478 1.90 0.00 0.00 1.90
6205 9390 3.086282 ACTACAAAAAGGCCGGTAATGG 58.914 45.455 1.90 0.00 0.00 3.16
6206 9391 2.296073 ACAAAAAGGCCGGTAATGGA 57.704 45.000 1.90 0.00 0.00 3.41
6207 9392 2.815158 ACAAAAAGGCCGGTAATGGAT 58.185 42.857 1.90 0.00 0.00 3.41
6208 9393 2.495669 ACAAAAAGGCCGGTAATGGATG 59.504 45.455 1.90 0.00 0.00 3.51
6209 9394 2.757868 CAAAAAGGCCGGTAATGGATGA 59.242 45.455 1.90 0.00 0.00 2.92
6210 9395 3.312736 AAAAGGCCGGTAATGGATGAT 57.687 42.857 1.90 0.00 0.00 2.45
6211 9396 4.447138 AAAAGGCCGGTAATGGATGATA 57.553 40.909 1.90 0.00 0.00 2.15
6212 9397 4.447138 AAAGGCCGGTAATGGATGATAA 57.553 40.909 1.90 0.00 0.00 1.75
6213 9398 4.447138 AAGGCCGGTAATGGATGATAAA 57.553 40.909 1.90 0.00 0.00 1.40
6214 9399 4.447138 AGGCCGGTAATGGATGATAAAA 57.553 40.909 1.90 0.00 0.00 1.52
6215 9400 4.798882 AGGCCGGTAATGGATGATAAAAA 58.201 39.130 1.90 0.00 0.00 1.94
6216 9401 4.583073 AGGCCGGTAATGGATGATAAAAAC 59.417 41.667 1.90 0.00 0.00 2.43
6217 9402 4.339814 GGCCGGTAATGGATGATAAAAACA 59.660 41.667 1.90 0.00 0.00 2.83
6218 9403 5.010617 GGCCGGTAATGGATGATAAAAACAT 59.989 40.000 1.90 0.00 0.00 2.71
6219 9404 6.462347 GGCCGGTAATGGATGATAAAAACATT 60.462 38.462 1.90 0.00 36.00 2.71
6220 9405 6.640907 GCCGGTAATGGATGATAAAAACATTC 59.359 38.462 1.90 0.00 34.08 2.67
6221 9406 7.683222 GCCGGTAATGGATGATAAAAACATTCA 60.683 37.037 1.90 0.00 37.60 2.57
6222 9407 7.862372 CCGGTAATGGATGATAAAAACATTCAG 59.138 37.037 0.00 0.00 36.80 3.02
6223 9408 7.862372 CGGTAATGGATGATAAAAACATTCAGG 59.138 37.037 0.00 0.00 36.80 3.86
6224 9409 8.695456 GGTAATGGATGATAAAAACATTCAGGT 58.305 33.333 0.00 0.00 36.80 4.00
6225 9410 9.736023 GTAATGGATGATAAAAACATTCAGGTC 57.264 33.333 0.00 0.00 36.80 3.85
6226 9411 7.959658 ATGGATGATAAAAACATTCAGGTCA 57.040 32.000 0.00 0.00 36.80 4.02
6227 9412 7.773489 TGGATGATAAAAACATTCAGGTCAA 57.227 32.000 0.00 0.00 30.82 3.18
6228 9413 8.365060 TGGATGATAAAAACATTCAGGTCAAT 57.635 30.769 0.00 0.00 30.82 2.57
6229 9414 8.814931 TGGATGATAAAAACATTCAGGTCAATT 58.185 29.630 0.00 0.00 30.82 2.32
6230 9415 9.305925 GGATGATAAAAACATTCAGGTCAATTC 57.694 33.333 0.00 0.00 0.00 2.17
6231 9416 9.859427 GATGATAAAAACATTCAGGTCAATTCA 57.141 29.630 0.00 0.00 0.00 2.57
6309 9496 8.774546 AGAATAGAACATTCTGGATAGACTGA 57.225 34.615 4.34 0.00 37.14 3.41
6341 9528 3.634397 ACTGATGGTATTGACAGGTGG 57.366 47.619 0.00 0.00 35.08 4.61
6343 9530 1.064758 TGATGGTATTGACAGGTGGCC 60.065 52.381 0.00 0.00 0.00 5.36
6345 9532 0.998928 TGGTATTGACAGGTGGCCAT 59.001 50.000 9.72 0.00 0.00 4.40
6347 9534 1.299541 GTATTGACAGGTGGCCATCG 58.700 55.000 9.72 7.60 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.071385 CATAGAGATCCCTGCACACCC 59.929 57.143 0.00 0.00 0.00 4.61
17 18 1.071385 CCATAGAGATCCCTGCACACC 59.929 57.143 0.00 0.00 0.00 4.16
25 26 5.373812 TCAAAAAGGTCCATAGAGATCCC 57.626 43.478 0.00 0.00 0.00 3.85
64 66 7.586747 TGAAAACCGTTCTTATGTTATGGAAC 58.413 34.615 0.00 0.00 35.93 3.62
66 68 7.574217 GCTTGAAAACCGTTCTTATGTTATGGA 60.574 37.037 0.00 0.00 0.00 3.41
71 73 5.067283 ACAGCTTGAAAACCGTTCTTATGTT 59.933 36.000 0.00 0.00 0.00 2.71
73 75 5.049405 AGACAGCTTGAAAACCGTTCTTATG 60.049 40.000 0.00 0.00 0.00 1.90
81 83 2.484264 CCCTAAGACAGCTTGAAAACCG 59.516 50.000 0.00 0.00 35.56 4.44
93 95 3.827817 TGAAGAGAGGACCCTAAGACA 57.172 47.619 0.00 0.00 0.00 3.41
94 96 5.451354 ACTATGAAGAGAGGACCCTAAGAC 58.549 45.833 0.00 0.00 0.00 3.01
103 105 6.918067 TGTCTGAAAACTATGAAGAGAGGA 57.082 37.500 0.00 0.00 0.00 3.71
124 126 7.750229 AATCAACAATCAGAGTAACACATGT 57.250 32.000 0.00 0.00 0.00 3.21
173 175 9.546428 CTGCCCCTTTAAATCTTTTTATATTGG 57.454 33.333 0.00 0.00 0.00 3.16
177 179 9.707957 TGATCTGCCCCTTTAAATCTTTTTATA 57.292 29.630 0.00 0.00 0.00 0.98
178 180 8.608185 TGATCTGCCCCTTTAAATCTTTTTAT 57.392 30.769 0.00 0.00 0.00 1.40
179 181 8.429237 TTGATCTGCCCCTTTAAATCTTTTTA 57.571 30.769 0.00 0.00 0.00 1.52
180 182 6.933514 TGATCTGCCCCTTTAAATCTTTTT 57.066 33.333 0.00 0.00 0.00 1.94
181 183 6.933514 TTGATCTGCCCCTTTAAATCTTTT 57.066 33.333 0.00 0.00 0.00 2.27
182 184 6.269769 TGTTTGATCTGCCCCTTTAAATCTTT 59.730 34.615 0.00 0.00 0.00 2.52
183 185 5.779771 TGTTTGATCTGCCCCTTTAAATCTT 59.220 36.000 0.00 0.00 0.00 2.40
184 186 5.332743 TGTTTGATCTGCCCCTTTAAATCT 58.667 37.500 0.00 0.00 0.00 2.40
185 187 5.659440 TGTTTGATCTGCCCCTTTAAATC 57.341 39.130 0.00 0.00 0.00 2.17
186 188 6.432403 TTTGTTTGATCTGCCCCTTTAAAT 57.568 33.333 0.00 0.00 0.00 1.40
187 189 5.878406 TTTGTTTGATCTGCCCCTTTAAA 57.122 34.783 0.00 0.00 0.00 1.52
188 190 5.046663 GGATTTGTTTGATCTGCCCCTTTAA 60.047 40.000 0.00 0.00 0.00 1.52
189 191 4.466015 GGATTTGTTTGATCTGCCCCTTTA 59.534 41.667 0.00 0.00 0.00 1.85
190 192 3.261643 GGATTTGTTTGATCTGCCCCTTT 59.738 43.478 0.00 0.00 0.00 3.11
191 193 2.833943 GGATTTGTTTGATCTGCCCCTT 59.166 45.455 0.00 0.00 0.00 3.95
192 194 2.460669 GGATTTGTTTGATCTGCCCCT 58.539 47.619 0.00 0.00 0.00 4.79
193 195 1.482182 GGGATTTGTTTGATCTGCCCC 59.518 52.381 0.00 0.00 0.00 5.80
194 196 1.134946 CGGGATTTGTTTGATCTGCCC 59.865 52.381 0.00 0.00 0.00 5.36
195 197 1.134946 CCGGGATTTGTTTGATCTGCC 59.865 52.381 0.00 0.00 0.00 4.85
196 198 1.469767 GCCGGGATTTGTTTGATCTGC 60.470 52.381 2.18 0.00 0.00 4.26
197 199 1.134946 GGCCGGGATTTGTTTGATCTG 59.865 52.381 2.18 0.00 0.00 2.90
198 200 1.272425 TGGCCGGGATTTGTTTGATCT 60.272 47.619 2.18 0.00 0.00 2.75
199 201 1.181786 TGGCCGGGATTTGTTTGATC 58.818 50.000 2.18 0.00 0.00 2.92
200 202 1.756538 GATGGCCGGGATTTGTTTGAT 59.243 47.619 2.18 0.00 0.00 2.57
201 203 1.181786 GATGGCCGGGATTTGTTTGA 58.818 50.000 2.18 0.00 0.00 2.69
202 204 0.894141 TGATGGCCGGGATTTGTTTG 59.106 50.000 2.18 0.00 0.00 2.93
203 205 1.638529 TTGATGGCCGGGATTTGTTT 58.361 45.000 2.18 0.00 0.00 2.83
204 206 1.638529 TTTGATGGCCGGGATTTGTT 58.361 45.000 2.18 0.00 0.00 2.83
205 207 1.756538 GATTTGATGGCCGGGATTTGT 59.243 47.619 2.18 0.00 0.00 2.83
206 208 1.755959 TGATTTGATGGCCGGGATTTG 59.244 47.619 2.18 0.00 0.00 2.32
207 209 2.034124 CTGATTTGATGGCCGGGATTT 58.966 47.619 2.18 0.00 0.00 2.17
208 210 1.696063 CTGATTTGATGGCCGGGATT 58.304 50.000 2.18 0.00 0.00 3.01
209 211 0.178981 CCTGATTTGATGGCCGGGAT 60.179 55.000 2.18 0.00 0.00 3.85
210 212 1.227102 CCTGATTTGATGGCCGGGA 59.773 57.895 2.18 0.00 0.00 5.14
211 213 1.076777 ACCTGATTTGATGGCCGGG 60.077 57.895 2.18 0.00 0.00 5.73
212 214 0.394216 TGACCTGATTTGATGGCCGG 60.394 55.000 0.00 0.00 0.00 6.13
213 215 1.462616 TTGACCTGATTTGATGGCCG 58.537 50.000 0.00 0.00 0.00 6.13
214 216 2.363359 GGATTGACCTGATTTGATGGCC 59.637 50.000 0.00 0.00 35.41 5.36
215 217 2.033801 CGGATTGACCTGATTTGATGGC 59.966 50.000 0.00 0.00 36.31 4.40
216 218 3.313526 GTCGGATTGACCTGATTTGATGG 59.686 47.826 0.00 0.00 42.04 3.51
217 219 3.001634 CGTCGGATTGACCTGATTTGATG 59.998 47.826 0.00 0.00 45.23 3.07
218 220 3.118775 TCGTCGGATTGACCTGATTTGAT 60.119 43.478 0.00 0.00 45.23 2.57
219 221 2.232696 TCGTCGGATTGACCTGATTTGA 59.767 45.455 0.00 0.00 45.23 2.69
220 222 2.604914 CTCGTCGGATTGACCTGATTTG 59.395 50.000 0.00 0.00 45.23 2.32
221 223 2.233922 ACTCGTCGGATTGACCTGATTT 59.766 45.455 0.00 0.00 45.23 2.17
222 224 1.825474 ACTCGTCGGATTGACCTGATT 59.175 47.619 0.00 0.00 45.23 2.57
223 225 1.405821 GACTCGTCGGATTGACCTGAT 59.594 52.381 0.00 0.00 45.23 2.90
224 226 0.809385 GACTCGTCGGATTGACCTGA 59.191 55.000 0.00 0.00 45.23 3.86
225 227 0.526211 TGACTCGTCGGATTGACCTG 59.474 55.000 0.00 0.00 45.23 4.00
226 228 0.811915 CTGACTCGTCGGATTGACCT 59.188 55.000 0.00 0.00 45.23 3.85
227 229 0.802607 GCTGACTCGTCGGATTGACC 60.803 60.000 9.96 0.00 45.23 4.02
228 230 0.802607 GGCTGACTCGTCGGATTGAC 60.803 60.000 9.96 0.00 44.53 3.18
229 231 0.965866 AGGCTGACTCGTCGGATTGA 60.966 55.000 9.96 0.00 38.21 2.57
230 232 0.803768 CAGGCTGACTCGTCGGATTG 60.804 60.000 9.42 3.47 38.21 2.67
231 233 1.513158 CAGGCTGACTCGTCGGATT 59.487 57.895 9.42 0.00 38.21 3.01
232 234 3.069980 GCAGGCTGACTCGTCGGAT 62.070 63.158 20.86 0.00 38.21 4.18
233 235 3.749064 GCAGGCTGACTCGTCGGA 61.749 66.667 20.86 0.00 38.21 4.55
234 236 3.691744 GAGCAGGCTGACTCGTCGG 62.692 68.421 20.86 1.52 38.96 4.79
235 237 1.369839 TAGAGCAGGCTGACTCGTCG 61.370 60.000 20.86 0.00 37.99 5.12
236 238 0.811915 TTAGAGCAGGCTGACTCGTC 59.188 55.000 20.86 5.94 37.99 4.20
237 239 1.135915 CATTAGAGCAGGCTGACTCGT 59.864 52.381 20.86 14.78 37.99 4.18
238 240 1.406898 TCATTAGAGCAGGCTGACTCG 59.593 52.381 20.86 11.02 37.99 4.18
239 241 3.069300 TCATCATTAGAGCAGGCTGACTC 59.931 47.826 20.86 22.21 0.00 3.36
240 242 3.036819 TCATCATTAGAGCAGGCTGACT 58.963 45.455 20.86 18.01 0.00 3.41
241 243 3.391965 CTCATCATTAGAGCAGGCTGAC 58.608 50.000 20.86 11.32 0.00 3.51
242 244 3.747854 CTCATCATTAGAGCAGGCTGA 57.252 47.619 20.86 0.00 0.00 4.26
250 252 3.244814 GTGTTGAGCGCTCATCATTAGAG 59.755 47.826 39.14 0.00 40.23 2.43
251 253 3.190079 GTGTTGAGCGCTCATCATTAGA 58.810 45.455 39.14 23.61 40.23 2.10
252 254 2.034254 CGTGTTGAGCGCTCATCATTAG 60.034 50.000 39.14 30.72 40.23 1.73
253 255 1.926510 CGTGTTGAGCGCTCATCATTA 59.073 47.619 39.14 25.15 40.23 1.90
254 256 0.723414 CGTGTTGAGCGCTCATCATT 59.277 50.000 39.14 8.63 40.23 2.57
255 257 2.377004 CGTGTTGAGCGCTCATCAT 58.623 52.632 39.14 9.40 40.23 2.45
256 258 3.860717 CGTGTTGAGCGCTCATCA 58.139 55.556 35.70 35.70 39.64 3.07
271 273 1.508632 ATTAACTGCACACGAAGCGT 58.491 45.000 0.00 0.00 42.36 5.07
272 274 3.925688 ATATTAACTGCACACGAAGCG 57.074 42.857 0.00 0.00 33.85 4.68
273 275 8.708742 TGATATTATATTAACTGCACACGAAGC 58.291 33.333 0.00 0.00 0.00 3.86
375 377 9.076781 TGCACGTTGGTATTACTAGGTAATATA 57.923 33.333 11.62 4.36 41.18 0.86
376 378 7.954835 TGCACGTTGGTATTACTAGGTAATAT 58.045 34.615 11.62 0.00 41.18 1.28
377 379 7.345422 TGCACGTTGGTATTACTAGGTAATA 57.655 36.000 6.17 6.17 39.18 0.98
378 380 6.224665 TGCACGTTGGTATTACTAGGTAAT 57.775 37.500 7.84 7.84 41.02 1.89
379 381 5.657826 TGCACGTTGGTATTACTAGGTAA 57.342 39.130 0.00 0.00 32.36 2.85
380 382 5.657826 TTGCACGTTGGTATTACTAGGTA 57.342 39.130 0.00 0.00 0.00 3.08
381 383 4.540359 TTGCACGTTGGTATTACTAGGT 57.460 40.909 0.00 0.00 0.00 3.08
382 384 4.260620 GCATTGCACGTTGGTATTACTAGG 60.261 45.833 3.15 0.00 0.00 3.02
383 385 4.331443 TGCATTGCACGTTGGTATTACTAG 59.669 41.667 7.38 0.00 31.71 2.57
384 386 4.254492 TGCATTGCACGTTGGTATTACTA 58.746 39.130 7.38 0.00 31.71 1.82
385 387 3.078097 TGCATTGCACGTTGGTATTACT 58.922 40.909 7.38 0.00 31.71 2.24
386 388 3.479505 TGCATTGCACGTTGGTATTAC 57.520 42.857 7.38 0.00 31.71 1.89
398 400 4.693538 ATAAATGTGTACGTGCATTGCA 57.306 36.364 10.21 7.38 35.72 4.08
399 401 6.255215 ACTAATAAATGTGTACGTGCATTGC 58.745 36.000 10.21 0.46 35.72 3.56
472 474 0.457853 GCCGTTCGTGAGCATGTCTA 60.458 55.000 0.00 0.00 0.00 2.59
475 477 2.742372 GGCCGTTCGTGAGCATGT 60.742 61.111 0.00 0.00 0.00 3.21
476 478 2.741985 TGGCCGTTCGTGAGCATG 60.742 61.111 0.00 0.00 0.00 4.06
478 480 2.449031 AATCTGGCCGTTCGTGAGCA 62.449 55.000 0.00 0.00 0.00 4.26
480 507 1.560923 CTAATCTGGCCGTTCGTGAG 58.439 55.000 0.00 0.00 0.00 3.51
595 623 1.207593 CACTCGCTTTTTCTGGCCG 59.792 57.895 0.00 0.00 0.00 6.13
773 825 4.742201 AGCTCACAATCGCGCGGT 62.742 61.111 31.69 23.12 0.00 5.68
1053 1114 3.647771 GAAGGGGAGGGGCAACGT 61.648 66.667 0.00 0.00 37.60 3.99
1436 1509 7.645132 AGATTGGATTAGGAGGATCAAGAAT 57.355 36.000 0.00 0.00 36.25 2.40
1484 1564 5.620738 ACCTGTGTAGTAGCATCATCAAT 57.379 39.130 0.00 0.00 0.00 2.57
1485 1565 5.187772 AGAACCTGTGTAGTAGCATCATCAA 59.812 40.000 0.00 0.00 0.00 2.57
1486 1566 4.711846 AGAACCTGTGTAGTAGCATCATCA 59.288 41.667 0.00 0.00 0.00 3.07
1487 1567 5.046529 CAGAACCTGTGTAGTAGCATCATC 58.953 45.833 0.00 0.00 0.00 2.92
1488 1568 4.711846 TCAGAACCTGTGTAGTAGCATCAT 59.288 41.667 0.00 0.00 32.61 2.45
1489 1569 4.086457 TCAGAACCTGTGTAGTAGCATCA 58.914 43.478 0.00 0.00 32.61 3.07
1490 1570 4.720649 TCAGAACCTGTGTAGTAGCATC 57.279 45.455 0.00 0.00 32.61 3.91
1528 1608 1.628340 TGGAAGGTGGTGATGGTGTAG 59.372 52.381 0.00 0.00 0.00 2.74
1776 2692 6.956102 TTAGGAGTACACCCCTTCAATAAA 57.044 37.500 5.63 0.00 34.11 1.40
1790 2706 9.535878 CAGATTAAAAGTGAGGATTAGGAGTAC 57.464 37.037 0.00 0.00 0.00 2.73
1791 2707 8.204836 GCAGATTAAAAGTGAGGATTAGGAGTA 58.795 37.037 0.00 0.00 0.00 2.59
1795 2711 7.307632 CGATGCAGATTAAAAGTGAGGATTAGG 60.308 40.741 0.00 0.00 0.00 2.69
1847 2763 8.546244 GGTATAATAAGAACTTTGCTTCGGTAC 58.454 37.037 0.00 0.00 0.00 3.34
1889 2805 6.639279 CGTGTTACCGAAAAGGAAAATTCATT 59.361 34.615 0.00 0.00 45.00 2.57
1890 2806 6.146898 CGTGTTACCGAAAAGGAAAATTCAT 58.853 36.000 0.00 0.00 45.00 2.57
1891 2807 5.066246 ACGTGTTACCGAAAAGGAAAATTCA 59.934 36.000 0.00 0.00 45.00 2.57
1892 2808 5.513376 ACGTGTTACCGAAAAGGAAAATTC 58.487 37.500 0.00 0.00 45.00 2.17
2187 3109 8.627208 AGAACAACATATTCATCTGTTTCTGT 57.373 30.769 0.00 0.00 33.45 3.41
2249 3171 3.723554 GGCACGAGAGAACCTACTG 57.276 57.895 0.00 0.00 0.00 2.74
2471 3395 3.083997 GGCCCTCTCCACGGACAT 61.084 66.667 0.00 0.00 0.00 3.06
2478 3402 2.607750 GTGACCAGGCCCTCTCCA 60.608 66.667 0.00 0.00 0.00 3.86
2538 3462 7.679783 TGGATATGTAGTATGGATTTGAGGTG 58.320 38.462 0.00 0.00 0.00 4.00
2558 3482 5.786311 ACTACGTAGCTTTTGTGTTGGATA 58.214 37.500 22.40 0.00 0.00 2.59
2561 3485 4.151157 GGTACTACGTAGCTTTTGTGTTGG 59.849 45.833 22.40 0.00 34.22 3.77
2578 3502 9.705103 AACACTAGGTTTATCTATGTGGTACTA 57.295 33.333 0.00 0.00 35.82 1.82
2794 4560 3.508840 CAAAGCCCCGCATCGACC 61.509 66.667 0.00 0.00 0.00 4.79
2796 4562 0.531974 GTATCAAAGCCCCGCATCGA 60.532 55.000 0.00 0.00 0.00 3.59
2799 4565 0.466189 CTGGTATCAAAGCCCCGCAT 60.466 55.000 0.00 0.00 0.00 4.73
2803 4569 3.018423 ACAATCTGGTATCAAAGCCCC 57.982 47.619 0.00 0.00 0.00 5.80
2805 4571 6.460123 CCACATAACAATCTGGTATCAAAGCC 60.460 42.308 0.00 0.00 25.15 4.35
2806 4572 6.498304 CCACATAACAATCTGGTATCAAAGC 58.502 40.000 0.00 0.00 25.15 3.51
2807 4573 6.319658 AGCCACATAACAATCTGGTATCAAAG 59.680 38.462 0.00 0.00 25.15 2.77
2808 4574 6.095300 CAGCCACATAACAATCTGGTATCAAA 59.905 38.462 0.00 0.00 25.15 2.69
2809 4575 5.589855 CAGCCACATAACAATCTGGTATCAA 59.410 40.000 0.00 0.00 25.15 2.57
3084 5272 3.946558 ACGACAAGTAGAAGTAGGCTAGG 59.053 47.826 0.00 0.00 0.00 3.02
3085 5273 4.634883 TGACGACAAGTAGAAGTAGGCTAG 59.365 45.833 0.00 0.00 0.00 3.42
3086 5274 4.582869 TGACGACAAGTAGAAGTAGGCTA 58.417 43.478 0.00 0.00 0.00 3.93
3087 5275 3.418995 TGACGACAAGTAGAAGTAGGCT 58.581 45.455 0.00 0.00 0.00 4.58
3088 5276 3.439476 TCTGACGACAAGTAGAAGTAGGC 59.561 47.826 0.00 0.00 0.00 3.93
3232 5423 3.028921 GCTCAGAGGCAGAGGTGGG 62.029 68.421 0.00 0.00 33.72 4.61
3240 5431 2.364186 TCCATCCGCTCAGAGGCA 60.364 61.111 0.00 0.00 0.00 4.75
3351 5542 1.841302 AAGACAAGGCAGATCCGGCA 61.841 55.000 5.18 0.00 40.77 5.69
3365 5556 0.616111 GCCAGAGGAGGAGGAAGACA 60.616 60.000 0.00 0.00 0.00 3.41
3367 5558 0.032615 GAGCCAGAGGAGGAGGAAGA 60.033 60.000 0.00 0.00 0.00 2.87
3370 5561 1.309347 CAGAGCCAGAGGAGGAGGA 59.691 63.158 0.00 0.00 0.00 3.71
3371 5562 2.433994 GCAGAGCCAGAGGAGGAGG 61.434 68.421 0.00 0.00 0.00 4.30
3372 5563 2.784356 CGCAGAGCCAGAGGAGGAG 61.784 68.421 0.00 0.00 0.00 3.69
3423 5614 3.136750 CAGGAGGAGGAGGATGCG 58.863 66.667 0.00 0.00 0.00 4.73
3551 5742 1.281577 TCACCACCTATGCAATGCTCA 59.718 47.619 6.82 0.00 0.00 4.26
3793 5984 4.899239 GCTGACCGGCATCCCTCG 62.899 72.222 0.00 0.00 0.00 4.63
3817 6008 2.373502 GCTCCTCAAACTGGCCCTATAT 59.626 50.000 0.00 0.00 0.00 0.86
3865 6056 4.436998 GACGGCCCGGTCAGTGAG 62.437 72.222 8.57 0.00 36.91 3.51
3997 6193 7.110155 TGTGAACTACTGGTTTCTTTCTTTCT 58.890 34.615 0.00 0.00 38.41 2.52
4070 6266 3.421844 ACACCTCACTTCCCATTTTAGC 58.578 45.455 0.00 0.00 0.00 3.09
4244 6446 3.245479 GGAAATAAACCAGTTGGGGGAGA 60.245 47.826 2.79 0.00 42.91 3.71
4298 6500 8.097038 CCCAAAGTACATATGCAGTCAGTATAT 58.903 37.037 1.58 0.00 36.14 0.86
4509 6721 2.427232 TCGTCCAACGTTTCCTGTAG 57.573 50.000 0.00 0.00 43.14 2.74
4690 6902 9.559958 CAATGTTCGAAAAAGTTATGATTAGCT 57.440 29.630 0.00 0.00 0.00 3.32
4847 8026 6.996282 CCTTTGTAGAACCTCCAAAACTTCTA 59.004 38.462 0.00 0.00 0.00 2.10
4849 8028 5.593095 ACCTTTGTAGAACCTCCAAAACTTC 59.407 40.000 0.00 0.00 0.00 3.01
4880 8059 5.010213 CCCCTAGAGCTACTAAGTGACAATC 59.990 48.000 0.00 0.00 0.00 2.67
4884 8063 2.624364 GCCCCTAGAGCTACTAAGTGAC 59.376 54.545 0.00 0.00 0.00 3.67
4898 8077 1.077429 GGCAAAGTCCAGCCCCTAG 60.077 63.158 0.00 0.00 45.18 3.02
4945 8124 8.293867 GGTAAAATAACATGTACACTGAAAGCA 58.706 33.333 0.00 0.00 37.60 3.91
5016 8195 9.436957 GATAAGTGGTAGAAGTTGAATTTCAGA 57.563 33.333 3.28 0.00 0.00 3.27
5095 8274 5.916883 CAGAAACTTTGTTACAGGCAATCAG 59.083 40.000 0.00 0.00 0.00 2.90
5126 8305 2.224305 ACTATATGAAACCTGCCTCGGC 60.224 50.000 0.00 0.00 42.35 5.54
5213 8393 5.185056 TCTGAAGAAGATAACGGATGACACA 59.815 40.000 0.00 0.00 0.00 3.72
5261 8441 6.182507 TGGTTAGTCATGAAGTTACCAAGT 57.817 37.500 12.56 0.00 31.71 3.16
5405 8587 3.034635 TGCCTTTGGTTTTGCCTTCTTA 58.965 40.909 0.00 0.00 38.35 2.10
5504 8686 3.248602 GGAAAGCCAAGTGTATGCTATCG 59.751 47.826 0.00 0.00 34.29 2.92
5506 8688 3.555966 GGGAAAGCCAAGTGTATGCTAT 58.444 45.455 0.00 0.00 34.29 2.97
5614 8796 6.691754 TTTGACAGTGCTATTTCTTTGTCA 57.308 33.333 1.36 1.36 42.02 3.58
5962 9146 7.607250 AGTAGTTCAGAAACTAGATCTGTTGG 58.393 38.462 21.44 2.78 46.14 3.77
6027 9211 8.558700 CGAATTTTTGTTTTCCATTTCCTGAAT 58.441 29.630 0.00 0.00 0.00 2.57
6028 9212 7.766278 TCGAATTTTTGTTTTCCATTTCCTGAA 59.234 29.630 0.00 0.00 0.00 3.02
6029 9213 7.268586 TCGAATTTTTGTTTTCCATTTCCTGA 58.731 30.769 0.00 0.00 0.00 3.86
6030 9214 7.437862 TCTCGAATTTTTGTTTTCCATTTCCTG 59.562 33.333 0.00 0.00 0.00 3.86
6032 9216 7.707774 TCTCGAATTTTTGTTTTCCATTTCC 57.292 32.000 0.00 0.00 0.00 3.13
6034 9218 9.423061 CCTATCTCGAATTTTTGTTTTCCATTT 57.577 29.630 0.00 0.00 0.00 2.32
6035 9219 8.585018 ACCTATCTCGAATTTTTGTTTTCCATT 58.415 29.630 0.00 0.00 0.00 3.16
6036 9220 8.122472 ACCTATCTCGAATTTTTGTTTTCCAT 57.878 30.769 0.00 0.00 0.00 3.41
6037 9221 7.519032 ACCTATCTCGAATTTTTGTTTTCCA 57.481 32.000 0.00 0.00 0.00 3.53
6038 9222 9.902196 TTAACCTATCTCGAATTTTTGTTTTCC 57.098 29.630 0.00 0.00 0.00 3.13
6046 9230 9.736023 GCAAATGATTAACCTATCTCGAATTTT 57.264 29.630 0.00 0.00 0.00 1.82
6047 9231 8.902806 TGCAAATGATTAACCTATCTCGAATTT 58.097 29.630 0.00 0.00 0.00 1.82
6048 9232 8.450578 TGCAAATGATTAACCTATCTCGAATT 57.549 30.769 0.00 0.00 0.00 2.17
6049 9233 8.509690 CATGCAAATGATTAACCTATCTCGAAT 58.490 33.333 0.00 0.00 0.00 3.34
6052 9237 7.073883 CACATGCAAATGATTAACCTATCTCG 58.926 38.462 0.00 0.00 0.00 4.04
6074 9259 1.774110 AAGGAAACCACACATGCACA 58.226 45.000 0.00 0.00 0.00 4.57
6081 9266 4.600692 ATTTGGCTAAAGGAAACCACAC 57.399 40.909 0.65 0.00 0.00 3.82
6180 9365 2.871453 ACCGGCCTTTTTGTAGTGAAT 58.129 42.857 0.00 0.00 0.00 2.57
6194 9379 4.339814 TGTTTTTATCATCCATTACCGGCC 59.660 41.667 0.00 0.00 0.00 6.13
6195 9380 5.508200 TGTTTTTATCATCCATTACCGGC 57.492 39.130 0.00 0.00 0.00 6.13
6196 9381 7.711846 TGAATGTTTTTATCATCCATTACCGG 58.288 34.615 0.00 0.00 0.00 5.28
6197 9382 7.862372 CCTGAATGTTTTTATCATCCATTACCG 59.138 37.037 0.00 0.00 0.00 4.02
6198 9383 8.695456 ACCTGAATGTTTTTATCATCCATTACC 58.305 33.333 0.00 0.00 0.00 2.85
6199 9384 9.736023 GACCTGAATGTTTTTATCATCCATTAC 57.264 33.333 0.00 0.00 0.00 1.89
6200 9385 9.473007 TGACCTGAATGTTTTTATCATCCATTA 57.527 29.630 0.00 0.00 0.00 1.90
6201 9386 8.365060 TGACCTGAATGTTTTTATCATCCATT 57.635 30.769 0.00 0.00 0.00 3.16
6202 9387 7.959658 TGACCTGAATGTTTTTATCATCCAT 57.040 32.000 0.00 0.00 0.00 3.41
6203 9388 7.773489 TTGACCTGAATGTTTTTATCATCCA 57.227 32.000 0.00 0.00 0.00 3.41
6204 9389 9.305925 GAATTGACCTGAATGTTTTTATCATCC 57.694 33.333 0.00 0.00 0.00 3.51
6205 9390 9.859427 TGAATTGACCTGAATGTTTTTATCATC 57.141 29.630 0.00 0.00 0.00 2.92
6210 9395 9.487790 GGAATTGAATTGACCTGAATGTTTTTA 57.512 29.630 0.00 0.00 0.00 1.52
6211 9396 8.212995 AGGAATTGAATTGACCTGAATGTTTTT 58.787 29.630 0.00 0.00 0.00 1.94
6212 9397 7.738847 AGGAATTGAATTGACCTGAATGTTTT 58.261 30.769 0.00 0.00 0.00 2.43
6213 9398 7.015487 TGAGGAATTGAATTGACCTGAATGTTT 59.985 33.333 3.18 0.00 0.00 2.83
6214 9399 6.494491 TGAGGAATTGAATTGACCTGAATGTT 59.506 34.615 3.18 0.00 0.00 2.71
6215 9400 6.012113 TGAGGAATTGAATTGACCTGAATGT 58.988 36.000 3.18 0.00 0.00 2.71
6216 9401 6.327934 GTGAGGAATTGAATTGACCTGAATG 58.672 40.000 3.18 0.00 0.00 2.67
6217 9402 5.420104 GGTGAGGAATTGAATTGACCTGAAT 59.580 40.000 3.18 0.00 0.00 2.57
6218 9403 4.766891 GGTGAGGAATTGAATTGACCTGAA 59.233 41.667 3.18 0.00 0.00 3.02
6219 9404 4.202556 TGGTGAGGAATTGAATTGACCTGA 60.203 41.667 3.18 0.00 0.00 3.86
6220 9405 4.081406 TGGTGAGGAATTGAATTGACCTG 58.919 43.478 3.18 0.00 0.00 4.00
6221 9406 4.387026 TGGTGAGGAATTGAATTGACCT 57.613 40.909 0.00 0.00 0.00 3.85
6222 9407 5.467035 TTTGGTGAGGAATTGAATTGACC 57.533 39.130 0.00 0.00 0.00 4.02
6223 9408 8.055279 TCTATTTGGTGAGGAATTGAATTGAC 57.945 34.615 0.00 0.00 0.00 3.18
6224 9409 8.648698 TTCTATTTGGTGAGGAATTGAATTGA 57.351 30.769 0.00 0.00 0.00 2.57
6225 9410 9.709495 TTTTCTATTTGGTGAGGAATTGAATTG 57.291 29.630 0.00 0.00 30.93 2.32
6307 9494 4.780815 ACCATCAGTTTCACTTTCACTCA 58.219 39.130 0.00 0.00 0.00 3.41
6309 9496 6.998074 TCAATACCATCAGTTTCACTTTCACT 59.002 34.615 0.00 0.00 0.00 3.41
6323 9510 1.064758 GGCCACCTGTCAATACCATCA 60.065 52.381 0.00 0.00 0.00 3.07
6341 9528 3.195825 AGGTTAGTATGGCTATCGATGGC 59.804 47.826 24.15 24.15 0.00 4.40
6343 9530 5.164233 CACAGGTTAGTATGGCTATCGATG 58.836 45.833 8.54 0.00 0.00 3.84
6345 9532 3.572682 CCACAGGTTAGTATGGCTATCGA 59.427 47.826 0.00 0.00 0.00 3.59
6347 9534 5.246203 TCATCCACAGGTTAGTATGGCTATC 59.754 44.000 0.00 0.00 31.87 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.