Multiple sequence alignment - TraesCS1D01G115400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G115400 | chr1D | 100.000 | 5446 | 0 | 0 | 1 | 5446 | 111088288 | 111093733 | 0.000000e+00 | 10057.0 |
1 | TraesCS1D01G115400 | chr1D | 80.403 | 347 | 43 | 15 | 5103 | 5446 | 76473917 | 76474241 | 1.960000e-59 | 241.0 |
2 | TraesCS1D01G115400 | chr1D | 82.474 | 97 | 15 | 2 | 5198 | 5292 | 396741865 | 396741769 | 3.500000e-12 | 84.2 |
3 | TraesCS1D01G115400 | chr1D | 100.000 | 32 | 0 | 0 | 1487 | 1518 | 5518593 | 5518624 | 5.890000e-05 | 60.2 |
4 | TraesCS1D01G115400 | chr1A | 95.310 | 4840 | 170 | 26 | 8 | 4814 | 117243568 | 117248383 | 0.000000e+00 | 7627.0 |
5 | TraesCS1D01G115400 | chr1A | 88.339 | 283 | 26 | 3 | 4991 | 5273 | 117248452 | 117248727 | 3.140000e-87 | 333.0 |
6 | TraesCS1D01G115400 | chr1A | 86.449 | 214 | 23 | 5 | 5235 | 5446 | 77078756 | 77078965 | 4.240000e-56 | 230.0 |
7 | TraesCS1D01G115400 | chr1A | 100.000 | 32 | 0 | 0 | 1487 | 1518 | 7185737 | 7185768 | 5.890000e-05 | 60.2 |
8 | TraesCS1D01G115400 | chr1B | 94.197 | 4532 | 163 | 35 | 351 | 4812 | 169693168 | 169697669 | 0.000000e+00 | 6820.0 |
9 | TraesCS1D01G115400 | chr1B | 93.948 | 347 | 17 | 4 | 4 | 349 | 169692235 | 169692578 | 6.250000e-144 | 521.0 |
10 | TraesCS1D01G115400 | chr1B | 81.293 | 294 | 33 | 13 | 5137 | 5428 | 119776399 | 119776672 | 9.180000e-53 | 219.0 |
11 | TraesCS1D01G115400 | chr1B | 95.238 | 42 | 1 | 1 | 1748 | 1789 | 328937229 | 328937269 | 1.270000e-06 | 65.8 |
12 | TraesCS1D01G115400 | chr1B | 100.000 | 32 | 0 | 0 | 1487 | 1518 | 8256002 | 8256033 | 5.890000e-05 | 60.2 |
13 | TraesCS1D01G115400 | chr3D | 82.974 | 2831 | 441 | 33 | 1042 | 3844 | 46580486 | 46583303 | 0.000000e+00 | 2519.0 |
14 | TraesCS1D01G115400 | chr3D | 89.489 | 352 | 37 | 0 | 3951 | 4302 | 46583411 | 46583762 | 3.870000e-121 | 446.0 |
15 | TraesCS1D01G115400 | chr3D | 78.531 | 177 | 35 | 3 | 5216 | 5390 | 341677679 | 341677504 | 4.460000e-21 | 113.0 |
16 | TraesCS1D01G115400 | chr3A | 82.669 | 2833 | 450 | 33 | 1042 | 3847 | 57947705 | 57944887 | 0.000000e+00 | 2473.0 |
17 | TraesCS1D01G115400 | chr3A | 89.685 | 349 | 36 | 0 | 3954 | 4302 | 57944789 | 57944441 | 3.870000e-121 | 446.0 |
18 | TraesCS1D01G115400 | chr3A | 77.564 | 156 | 18 | 12 | 5215 | 5361 | 737659654 | 737659801 | 1.630000e-10 | 78.7 |
19 | TraesCS1D01G115400 | chr3B | 82.558 | 2838 | 454 | 32 | 1042 | 3851 | 72950339 | 72953163 | 0.000000e+00 | 2460.0 |
20 | TraesCS1D01G115400 | chr3B | 89.049 | 347 | 38 | 0 | 3956 | 4302 | 72953274 | 72953620 | 1.080000e-116 | 431.0 |
21 | TraesCS1D01G115400 | chr3B | 91.852 | 135 | 11 | 0 | 4856 | 4990 | 704573825 | 704573959 | 7.200000e-44 | 189.0 |
22 | TraesCS1D01G115400 | chr6B | 95.497 | 1288 | 58 | 0 | 2304 | 3591 | 11954581 | 11955868 | 0.000000e+00 | 2058.0 |
23 | TraesCS1D01G115400 | chr6B | 92.537 | 134 | 10 | 0 | 4856 | 4989 | 468426546 | 468426679 | 5.570000e-45 | 193.0 |
24 | TraesCS1D01G115400 | chr4A | 91.912 | 136 | 11 | 0 | 4855 | 4990 | 596216145 | 596216280 | 2.000000e-44 | 191.0 |
25 | TraesCS1D01G115400 | chr4A | 90.698 | 43 | 4 | 0 | 3999 | 4041 | 737842158 | 737842200 | 2.120000e-04 | 58.4 |
26 | TraesCS1D01G115400 | chr4A | 90.698 | 43 | 4 | 0 | 3999 | 4041 | 738081464 | 738081506 | 2.120000e-04 | 58.4 |
27 | TraesCS1D01G115400 | chrUn | 91.852 | 135 | 11 | 0 | 4856 | 4990 | 315368521 | 315368387 | 7.200000e-44 | 189.0 |
28 | TraesCS1D01G115400 | chrUn | 91.852 | 135 | 11 | 0 | 4856 | 4990 | 357400961 | 357401095 | 7.200000e-44 | 189.0 |
29 | TraesCS1D01G115400 | chrUn | 91.852 | 135 | 11 | 0 | 4856 | 4990 | 377264479 | 377264613 | 7.200000e-44 | 189.0 |
30 | TraesCS1D01G115400 | chrUn | 85.714 | 70 | 7 | 3 | 1342 | 1410 | 87691132 | 87691199 | 2.720000e-08 | 71.3 |
31 | TraesCS1D01G115400 | chr6A | 91.111 | 135 | 12 | 0 | 4856 | 4990 | 485860384 | 485860518 | 3.350000e-42 | 183.0 |
32 | TraesCS1D01G115400 | chr5B | 90.580 | 138 | 13 | 0 | 4856 | 4993 | 349390634 | 349390497 | 3.350000e-42 | 183.0 |
33 | TraesCS1D01G115400 | chr5A | 88.742 | 151 | 15 | 2 | 4846 | 4995 | 327927300 | 327927449 | 3.350000e-42 | 183.0 |
34 | TraesCS1D01G115400 | chr5D | 80.137 | 146 | 27 | 2 | 5212 | 5355 | 278311375 | 278311230 | 2.070000e-19 | 108.0 |
35 | TraesCS1D01G115400 | chr5D | 92.308 | 39 | 3 | 0 | 3988 | 4026 | 446404460 | 446404498 | 7.620000e-04 | 56.5 |
36 | TraesCS1D01G115400 | chr4D | 89.062 | 64 | 7 | 0 | 3980 | 4043 | 283882120 | 283882057 | 4.520000e-11 | 80.5 |
37 | TraesCS1D01G115400 | chr4D | 100.000 | 31 | 0 | 0 | 5103 | 5133 | 324217061 | 324217031 | 2.120000e-04 | 58.4 |
38 | TraesCS1D01G115400 | chr7D | 85.915 | 71 | 10 | 0 | 1343 | 1413 | 70706992 | 70707062 | 5.850000e-10 | 76.8 |
39 | TraesCS1D01G115400 | chr7D | 84.722 | 72 | 10 | 1 | 1342 | 1413 | 70062104 | 70062034 | 2.720000e-08 | 71.3 |
40 | TraesCS1D01G115400 | chr7B | 81.522 | 92 | 15 | 2 | 1320 | 1410 | 698889132 | 698889222 | 2.100000e-09 | 75.0 |
41 | TraesCS1D01G115400 | chr7A | 90.698 | 43 | 4 | 0 | 5238 | 5280 | 207089117 | 207089159 | 2.120000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G115400 | chr1D | 111088288 | 111093733 | 5445 | False | 10057.0 | 10057 | 100.0000 | 1 | 5446 | 1 | chr1D.!!$F3 | 5445 |
1 | TraesCS1D01G115400 | chr1A | 117243568 | 117248727 | 5159 | False | 3980.0 | 7627 | 91.8245 | 8 | 5273 | 2 | chr1A.!!$F3 | 5265 |
2 | TraesCS1D01G115400 | chr1B | 169692235 | 169697669 | 5434 | False | 3670.5 | 6820 | 94.0725 | 4 | 4812 | 2 | chr1B.!!$F4 | 4808 |
3 | TraesCS1D01G115400 | chr3D | 46580486 | 46583762 | 3276 | False | 1482.5 | 2519 | 86.2315 | 1042 | 4302 | 2 | chr3D.!!$F1 | 3260 |
4 | TraesCS1D01G115400 | chr3A | 57944441 | 57947705 | 3264 | True | 1459.5 | 2473 | 86.1770 | 1042 | 4302 | 2 | chr3A.!!$R1 | 3260 |
5 | TraesCS1D01G115400 | chr3B | 72950339 | 72953620 | 3281 | False | 1445.5 | 2460 | 85.8035 | 1042 | 4302 | 2 | chr3B.!!$F2 | 3260 |
6 | TraesCS1D01G115400 | chr6B | 11954581 | 11955868 | 1287 | False | 2058.0 | 2058 | 95.4970 | 2304 | 3591 | 1 | chr6B.!!$F1 | 1287 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
623 | 1219 | 0.324738 | TCAGTGGTAGAGGCCAGAGG | 60.325 | 60.000 | 5.01 | 0.0 | 39.53 | 3.69 | F |
2070 | 2712 | 1.280421 | GGGAACAAGATCTCTGGCACT | 59.720 | 52.381 | 0.00 | 0.0 | 0.00 | 4.40 | F |
2566 | 3208 | 0.107508 | CCTCCACGACAATGCCATCT | 60.108 | 55.000 | 0.00 | 0.0 | 0.00 | 2.90 | F |
2619 | 3261 | 0.255033 | TGCTCTCGCTCCAGTACCTA | 59.745 | 55.000 | 0.00 | 0.0 | 36.97 | 3.08 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2256 | 2898 | 0.741221 | GAGCATTGGTCGACAGGTCC | 60.741 | 60.000 | 18.91 | 0.0 | 0.00 | 4.46 | R |
4010 | 4729 | 1.002990 | CATCTCCAGCAGCACCACA | 60.003 | 57.895 | 0.00 | 0.0 | 0.00 | 4.17 | R |
4175 | 4894 | 2.753043 | CCGAGGGCTTGCAGCATT | 60.753 | 61.111 | 0.00 | 0.0 | 44.75 | 3.56 | R |
4519 | 5268 | 3.390819 | ACATAATTTCTACGGGTCCCCT | 58.609 | 45.455 | 1.00 | 0.0 | 0.00 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
69 | 70 | 8.748380 | ATTAAGAATCTTTTTGTTACTGCTGC | 57.252 | 30.769 | 0.00 | 0.00 | 0.00 | 5.25 |
92 | 93 | 5.360144 | GCAGTGGTAGTATCTCCTTGTCTAA | 59.640 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
184 | 187 | 1.282157 | AGAGGAAGAACCCCCAATTCG | 59.718 | 52.381 | 0.00 | 0.00 | 40.05 | 3.34 |
220 | 223 | 0.764369 | TGGACTGTGGGTGCTCTTCT | 60.764 | 55.000 | 0.00 | 0.00 | 37.18 | 2.85 |
408 | 998 | 4.828296 | CTGCCCACCCAGATGCCC | 62.828 | 72.222 | 0.00 | 0.00 | 34.77 | 5.36 |
480 | 1076 | 2.969821 | TAGTTCACCAGTTGGGCATT | 57.030 | 45.000 | 2.79 | 0.00 | 42.05 | 3.56 |
515 | 1111 | 0.737219 | GTTGGTGATCTGATGCCTGC | 59.263 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
533 | 1129 | 9.533253 | GATGCCTGCAGTAACAAATTTAAATAT | 57.467 | 29.630 | 13.81 | 0.00 | 0.00 | 1.28 |
534 | 1130 | 8.700722 | TGCCTGCAGTAACAAATTTAAATATG | 57.299 | 30.769 | 13.81 | 0.00 | 0.00 | 1.78 |
608 | 1204 | 3.627395 | TGAAGGCGGTGATAATTCAGT | 57.373 | 42.857 | 0.00 | 0.00 | 30.85 | 3.41 |
609 | 1205 | 3.270027 | TGAAGGCGGTGATAATTCAGTG | 58.730 | 45.455 | 0.00 | 0.00 | 30.85 | 3.66 |
612 | 1208 | 2.769663 | AGGCGGTGATAATTCAGTGGTA | 59.230 | 45.455 | 0.00 | 0.00 | 30.85 | 3.25 |
613 | 1209 | 3.131396 | GGCGGTGATAATTCAGTGGTAG | 58.869 | 50.000 | 0.00 | 0.00 | 30.85 | 3.18 |
614 | 1210 | 3.181469 | GGCGGTGATAATTCAGTGGTAGA | 60.181 | 47.826 | 0.00 | 0.00 | 30.85 | 2.59 |
615 | 1211 | 4.051922 | GCGGTGATAATTCAGTGGTAGAG | 58.948 | 47.826 | 0.00 | 0.00 | 30.85 | 2.43 |
616 | 1212 | 4.621991 | CGGTGATAATTCAGTGGTAGAGG | 58.378 | 47.826 | 0.00 | 0.00 | 30.85 | 3.69 |
617 | 1213 | 4.381411 | GGTGATAATTCAGTGGTAGAGGC | 58.619 | 47.826 | 0.00 | 0.00 | 30.85 | 4.70 |
618 | 1214 | 4.381411 | GTGATAATTCAGTGGTAGAGGCC | 58.619 | 47.826 | 0.00 | 0.00 | 30.85 | 5.19 |
619 | 1215 | 4.037222 | TGATAATTCAGTGGTAGAGGCCA | 58.963 | 43.478 | 5.01 | 0.00 | 35.93 | 5.36 |
620 | 1216 | 4.101585 | TGATAATTCAGTGGTAGAGGCCAG | 59.898 | 45.833 | 5.01 | 0.00 | 39.53 | 4.85 |
621 | 1217 | 2.254152 | ATTCAGTGGTAGAGGCCAGA | 57.746 | 50.000 | 5.01 | 0.00 | 39.53 | 3.86 |
622 | 1218 | 1.561643 | TTCAGTGGTAGAGGCCAGAG | 58.438 | 55.000 | 5.01 | 0.00 | 39.53 | 3.35 |
623 | 1219 | 0.324738 | TCAGTGGTAGAGGCCAGAGG | 60.325 | 60.000 | 5.01 | 0.00 | 39.53 | 3.69 |
771 | 1388 | 7.125053 | CCTCAAATACTCTCTCTTTAACCTCCT | 59.875 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
839 | 1469 | 6.046593 | TCGCCACTCCATTAATTAGTTACTG | 58.953 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
842 | 1472 | 6.990349 | GCCACTCCATTAATTAGTTACTGCTA | 59.010 | 38.462 | 0.00 | 0.00 | 0.00 | 3.49 |
901 | 1531 | 4.224370 | TCCAATTAACACCTCTAGACCACC | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 4.61 |
923 | 1553 | 4.383552 | CCCAATTCTGTAGAGTTAGCTGCT | 60.384 | 45.833 | 7.57 | 7.57 | 0.00 | 4.24 |
955 | 1585 | 6.886459 | ACCTTGTACTCATGTTCTTGCATATT | 59.114 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
1554 | 2196 | 3.951680 | TCATCATCTACGACAACCAGCTA | 59.048 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1665 | 2307 | 2.657944 | GAGATCGGCAGCTGCTCG | 60.658 | 66.667 | 35.82 | 33.16 | 41.70 | 5.03 |
2064 | 2706 | 1.480137 | CTCAGCGGGAACAAGATCTCT | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
2070 | 2712 | 1.280421 | GGGAACAAGATCTCTGGCACT | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2566 | 3208 | 0.107508 | CCTCCACGACAATGCCATCT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2619 | 3261 | 0.255033 | TGCTCTCGCTCCAGTACCTA | 59.745 | 55.000 | 0.00 | 0.00 | 36.97 | 3.08 |
2675 | 3317 | 2.125552 | CGACATCGGCCTGCTCAA | 60.126 | 61.111 | 0.00 | 0.00 | 35.37 | 3.02 |
2841 | 3483 | 1.694696 | GGACTGGAGATCGCCCTTAAT | 59.305 | 52.381 | 13.44 | 0.00 | 0.00 | 1.40 |
2854 | 3496 | 2.019984 | CCCTTAATCTCAGCTGCAACC | 58.980 | 52.381 | 9.47 | 0.00 | 0.00 | 3.77 |
3183 | 3825 | 3.311110 | GTCGTCCTCCTGGTGGCA | 61.311 | 66.667 | 9.96 | 0.00 | 34.23 | 4.92 |
3242 | 3902 | 4.020617 | TGCCAGCGAGGACAAGGG | 62.021 | 66.667 | 2.12 | 0.00 | 41.22 | 3.95 |
3498 | 4158 | 2.736995 | CACCGCAACATCGTCCGT | 60.737 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
3504 | 4164 | 1.291877 | GCAACATCGTCCGTCTGCTT | 61.292 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3567 | 4227 | 2.050350 | CCTCCCGAACGGCACTCTA | 61.050 | 63.158 | 7.80 | 0.00 | 0.00 | 2.43 |
3570 | 4230 | 2.050350 | CCCGAACGGCACTCTAGGA | 61.050 | 63.158 | 7.80 | 0.00 | 0.00 | 2.94 |
3573 | 4233 | 1.313812 | CGAACGGCACTCTAGGAGGT | 61.314 | 60.000 | 0.00 | 0.00 | 33.35 | 3.85 |
3579 | 4239 | 0.744281 | GCACTCTAGGAGGTCTGCTC | 59.256 | 60.000 | 0.00 | 0.00 | 33.35 | 4.26 |
3618 | 4278 | 3.998672 | GCCGTCGTGGAGTGGGAA | 61.999 | 66.667 | 0.51 | 0.00 | 42.00 | 3.97 |
3965 | 4684 | 0.973632 | TGGTTGATGCAGAGTACGGT | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
4007 | 4726 | 0.314302 | AGAGCGACGTGTACAGCTTT | 59.686 | 50.000 | 8.56 | 0.98 | 40.39 | 3.51 |
4010 | 4729 | 1.219522 | GCGACGTGTACAGCTTTGGT | 61.220 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4175 | 4894 | 2.741092 | GACACGCAGGTCCAGGAA | 59.259 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
4497 | 5246 | 1.730121 | GCAGTGCGATGTTGACAATGG | 60.730 | 52.381 | 0.00 | 0.00 | 30.51 | 3.16 |
4514 | 5263 | 7.001674 | TGACAATGGAACCTTGTGTACTTTAT | 58.998 | 34.615 | 11.27 | 0.00 | 36.98 | 1.40 |
4515 | 5264 | 7.504238 | TGACAATGGAACCTTGTGTACTTTATT | 59.496 | 33.333 | 11.27 | 0.00 | 36.98 | 1.40 |
4516 | 5265 | 8.927675 | ACAATGGAACCTTGTGTACTTTATTA | 57.072 | 30.769 | 0.00 | 0.00 | 35.57 | 0.98 |
4517 | 5266 | 9.528489 | ACAATGGAACCTTGTGTACTTTATTAT | 57.472 | 29.630 | 0.00 | 0.00 | 35.57 | 1.28 |
4630 | 5391 | 5.205056 | TGGGTACAAATGTTGTTTCCTTCT | 58.795 | 37.500 | 0.00 | 0.00 | 42.22 | 2.85 |
4632 | 5393 | 4.982295 | GGTACAAATGTTGTTTCCTTCTGC | 59.018 | 41.667 | 0.00 | 0.00 | 42.22 | 4.26 |
4660 | 5421 | 7.989741 | GGGATTTAGTGATCATAGGATACCATG | 59.010 | 40.741 | 0.00 | 0.00 | 32.67 | 3.66 |
4837 | 5634 | 2.099098 | GGTCCAACACTGGTTTGTTCTG | 59.901 | 50.000 | 0.00 | 0.00 | 43.97 | 3.02 |
4846 | 5643 | 5.156355 | CACTGGTTTGTTCTGCATTACATC | 58.844 | 41.667 | 2.31 | 0.60 | 0.00 | 3.06 |
4847 | 5644 | 4.826733 | ACTGGTTTGTTCTGCATTACATCA | 59.173 | 37.500 | 2.31 | 2.28 | 0.00 | 3.07 |
4848 | 5645 | 5.048504 | ACTGGTTTGTTCTGCATTACATCAG | 60.049 | 40.000 | 16.23 | 16.23 | 0.00 | 2.90 |
4849 | 5646 | 4.168760 | GGTTTGTTCTGCATTACATCAGC | 58.831 | 43.478 | 2.31 | 0.00 | 0.00 | 4.26 |
4850 | 5647 | 4.168760 | GTTTGTTCTGCATTACATCAGCC | 58.831 | 43.478 | 2.31 | 0.00 | 0.00 | 4.85 |
4851 | 5648 | 3.070476 | TGTTCTGCATTACATCAGCCA | 57.930 | 42.857 | 0.00 | 0.00 | 0.00 | 4.75 |
4852 | 5649 | 3.011818 | TGTTCTGCATTACATCAGCCAG | 58.988 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
4853 | 5650 | 3.273434 | GTTCTGCATTACATCAGCCAGA | 58.727 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
4854 | 5651 | 3.851458 | TCTGCATTACATCAGCCAGAT | 57.149 | 42.857 | 0.00 | 0.00 | 37.48 | 2.90 |
4862 | 5659 | 2.131405 | ATCAGCCAGATGGACGAGG | 58.869 | 57.895 | 2.18 | 0.00 | 35.06 | 4.63 |
4863 | 5660 | 0.397675 | ATCAGCCAGATGGACGAGGA | 60.398 | 55.000 | 2.18 | 0.00 | 35.06 | 3.71 |
4864 | 5661 | 0.397675 | TCAGCCAGATGGACGAGGAT | 60.398 | 55.000 | 2.18 | 0.00 | 37.39 | 3.24 |
4865 | 5662 | 0.033228 | CAGCCAGATGGACGAGGATC | 59.967 | 60.000 | 2.18 | 0.00 | 37.39 | 3.36 |
4866 | 5663 | 1.118356 | AGCCAGATGGACGAGGATCC | 61.118 | 60.000 | 2.48 | 2.48 | 39.45 | 3.36 |
4867 | 5664 | 2.053618 | CCAGATGGACGAGGATCCC | 58.946 | 63.158 | 8.55 | 0.00 | 38.06 | 3.85 |
4868 | 5665 | 1.476007 | CCAGATGGACGAGGATCCCC | 61.476 | 65.000 | 8.55 | 2.57 | 38.06 | 4.81 |
4869 | 5666 | 3.856539 | CCAGATGGACGAGGATCCCCT | 62.857 | 61.905 | 8.55 | 0.00 | 41.28 | 4.79 |
4870 | 5667 | 0.470833 | AGATGGACGAGGATCCCCTG | 60.471 | 60.000 | 8.55 | 0.45 | 44.53 | 4.45 |
4871 | 5668 | 2.105806 | GATGGACGAGGATCCCCTGC | 62.106 | 65.000 | 8.55 | 0.00 | 44.53 | 4.85 |
4872 | 5669 | 2.444895 | GGACGAGGATCCCCTGCT | 60.445 | 66.667 | 8.55 | 0.00 | 44.53 | 4.24 |
4873 | 5670 | 2.801631 | GGACGAGGATCCCCTGCTG | 61.802 | 68.421 | 8.55 | 0.00 | 44.53 | 4.41 |
4874 | 5671 | 2.039624 | ACGAGGATCCCCTGCTGT | 59.960 | 61.111 | 8.55 | 0.00 | 44.53 | 4.40 |
4875 | 5672 | 2.303549 | GACGAGGATCCCCTGCTGTG | 62.304 | 65.000 | 8.55 | 0.00 | 44.53 | 3.66 |
4876 | 5673 | 2.191641 | GAGGATCCCCTGCTGTGC | 59.808 | 66.667 | 8.55 | 0.00 | 44.53 | 4.57 |
4877 | 5674 | 3.412624 | GAGGATCCCCTGCTGTGCC | 62.413 | 68.421 | 8.55 | 0.00 | 44.53 | 5.01 |
4878 | 5675 | 4.512914 | GGATCCCCTGCTGTGCCC | 62.513 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
4879 | 5676 | 4.512914 | GATCCCCTGCTGTGCCCC | 62.513 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
4888 | 5685 | 3.011517 | CTGTGCCCCAGCCTACCT | 61.012 | 66.667 | 0.00 | 0.00 | 38.69 | 3.08 |
4889 | 5686 | 2.531685 | TGTGCCCCAGCCTACCTT | 60.532 | 61.111 | 0.00 | 0.00 | 38.69 | 3.50 |
4890 | 5687 | 2.142292 | CTGTGCCCCAGCCTACCTTT | 62.142 | 60.000 | 0.00 | 0.00 | 38.69 | 3.11 |
4891 | 5688 | 1.678970 | GTGCCCCAGCCTACCTTTG | 60.679 | 63.158 | 0.00 | 0.00 | 38.69 | 2.77 |
4892 | 5689 | 1.850289 | TGCCCCAGCCTACCTTTGA | 60.850 | 57.895 | 0.00 | 0.00 | 38.69 | 2.69 |
4893 | 5690 | 1.077429 | GCCCCAGCCTACCTTTGAG | 60.077 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
4894 | 5691 | 1.853250 | GCCCCAGCCTACCTTTGAGT | 61.853 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4895 | 5692 | 0.253327 | CCCCAGCCTACCTTTGAGTC | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4896 | 5693 | 0.984230 | CCCAGCCTACCTTTGAGTCA | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4897 | 5694 | 1.339151 | CCCAGCCTACCTTTGAGTCAC | 60.339 | 57.143 | 0.00 | 0.00 | 0.00 | 3.67 |
4898 | 5695 | 1.625818 | CCAGCCTACCTTTGAGTCACT | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
4899 | 5696 | 2.613977 | CCAGCCTACCTTTGAGTCACTG | 60.614 | 54.545 | 0.00 | 0.00 | 0.00 | 3.66 |
4900 | 5697 | 2.300152 | CAGCCTACCTTTGAGTCACTGA | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4901 | 5698 | 2.300437 | AGCCTACCTTTGAGTCACTGAC | 59.700 | 50.000 | 0.38 | 0.38 | 0.00 | 3.51 |
4902 | 5699 | 2.037251 | GCCTACCTTTGAGTCACTGACA | 59.963 | 50.000 | 11.80 | 0.00 | 34.60 | 3.58 |
4903 | 5700 | 3.654414 | CCTACCTTTGAGTCACTGACAC | 58.346 | 50.000 | 11.80 | 5.84 | 34.60 | 3.67 |
4904 | 5701 | 3.069586 | CCTACCTTTGAGTCACTGACACA | 59.930 | 47.826 | 11.80 | 8.49 | 34.60 | 3.72 |
4905 | 5702 | 3.845781 | ACCTTTGAGTCACTGACACAT | 57.154 | 42.857 | 11.80 | 0.00 | 33.67 | 3.21 |
4906 | 5703 | 3.470709 | ACCTTTGAGTCACTGACACATG | 58.529 | 45.455 | 11.80 | 7.34 | 33.67 | 3.21 |
4907 | 5704 | 2.810274 | CCTTTGAGTCACTGACACATGG | 59.190 | 50.000 | 11.80 | 11.74 | 33.67 | 3.66 |
4908 | 5705 | 2.549064 | TTGAGTCACTGACACATGGG | 57.451 | 50.000 | 11.80 | 0.00 | 33.67 | 4.00 |
4909 | 5706 | 1.423584 | TGAGTCACTGACACATGGGT | 58.576 | 50.000 | 0.00 | 0.00 | 34.60 | 4.51 |
4910 | 5707 | 1.344438 | TGAGTCACTGACACATGGGTC | 59.656 | 52.381 | 21.62 | 21.62 | 38.29 | 4.46 |
4911 | 5708 | 0.687354 | AGTCACTGACACATGGGTCC | 59.313 | 55.000 | 25.06 | 9.33 | 36.97 | 4.46 |
4912 | 5709 | 0.321653 | GTCACTGACACATGGGTCCC | 60.322 | 60.000 | 25.06 | 0.00 | 36.97 | 4.46 |
4913 | 5710 | 0.766288 | TCACTGACACATGGGTCCCA | 60.766 | 55.000 | 25.06 | 14.64 | 36.97 | 4.37 |
4914 | 5711 | 0.606401 | CACTGACACATGGGTCCCAC | 60.606 | 60.000 | 25.06 | 1.17 | 35.80 | 4.61 |
4915 | 5712 | 1.059584 | ACTGACACATGGGTCCCACA | 61.060 | 55.000 | 25.06 | 6.33 | 35.80 | 4.17 |
4916 | 5713 | 0.321919 | CTGACACATGGGTCCCACAG | 60.322 | 60.000 | 25.06 | 12.57 | 35.80 | 3.66 |
4917 | 5714 | 0.766288 | TGACACATGGGTCCCACAGA | 60.766 | 55.000 | 25.06 | 2.26 | 35.80 | 3.41 |
4918 | 5715 | 0.036010 | GACACATGGGTCCCACAGAG | 60.036 | 60.000 | 17.79 | 10.30 | 35.80 | 3.35 |
4919 | 5716 | 1.377725 | CACATGGGTCCCACAGAGC | 60.378 | 63.158 | 14.57 | 0.00 | 42.55 | 4.09 |
4920 | 5717 | 1.847506 | ACATGGGTCCCACAGAGCA | 60.848 | 57.895 | 14.57 | 0.00 | 45.21 | 4.26 |
4921 | 5718 | 1.210204 | ACATGGGTCCCACAGAGCAT | 61.210 | 55.000 | 14.57 | 0.00 | 45.21 | 3.79 |
4922 | 5719 | 0.750546 | CATGGGTCCCACAGAGCATG | 60.751 | 60.000 | 14.57 | 1.23 | 45.21 | 4.06 |
4923 | 5720 | 1.929860 | ATGGGTCCCACAGAGCATGG | 61.930 | 60.000 | 14.57 | 0.00 | 45.21 | 3.66 |
4929 | 5726 | 4.051167 | CACAGAGCATGGGGCCCA | 62.051 | 66.667 | 30.97 | 30.97 | 46.50 | 5.36 |
4930 | 5727 | 4.052518 | ACAGAGCATGGGGCCCAC | 62.053 | 66.667 | 31.54 | 17.27 | 46.50 | 4.61 |
4931 | 5728 | 4.828296 | CAGAGCATGGGGCCCACC | 62.828 | 72.222 | 31.54 | 22.16 | 46.50 | 4.61 |
4933 | 5730 | 4.828296 | GAGCATGGGGCCCACCTG | 62.828 | 72.222 | 31.54 | 24.79 | 46.50 | 4.00 |
4936 | 5733 | 3.660571 | CATGGGGCCCACCTGTCA | 61.661 | 66.667 | 31.54 | 11.89 | 35.80 | 3.58 |
4937 | 5734 | 3.341629 | ATGGGGCCCACCTGTCAG | 61.342 | 66.667 | 31.54 | 0.00 | 35.80 | 3.51 |
4938 | 5735 | 4.918360 | TGGGGCCCACCTGTCAGT | 62.918 | 66.667 | 24.76 | 0.00 | 40.03 | 3.41 |
4939 | 5736 | 4.351054 | GGGGCCCACCTGTCAGTG | 62.351 | 72.222 | 26.86 | 0.00 | 40.03 | 3.66 |
4946 | 5743 | 3.402186 | CACCTGTCAGTGGCTCAAA | 57.598 | 52.632 | 0.00 | 0.00 | 33.95 | 2.69 |
4947 | 5744 | 1.233019 | CACCTGTCAGTGGCTCAAAG | 58.767 | 55.000 | 0.00 | 0.00 | 33.95 | 2.77 |
4948 | 5745 | 0.109342 | ACCTGTCAGTGGCTCAAAGG | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
4949 | 5746 | 1.239968 | CCTGTCAGTGGCTCAAAGGC | 61.240 | 60.000 | 0.00 | 0.00 | 41.77 | 4.35 |
4955 | 5752 | 3.914645 | TGGCTCAAAGGCAGGGTA | 58.085 | 55.556 | 0.00 | 0.00 | 46.47 | 3.69 |
4956 | 5753 | 2.397815 | TGGCTCAAAGGCAGGGTAT | 58.602 | 52.632 | 0.00 | 0.00 | 46.47 | 2.73 |
4957 | 5754 | 1.590591 | TGGCTCAAAGGCAGGGTATA | 58.409 | 50.000 | 0.00 | 0.00 | 46.47 | 1.47 |
4958 | 5755 | 1.490490 | TGGCTCAAAGGCAGGGTATAG | 59.510 | 52.381 | 0.00 | 0.00 | 46.47 | 1.31 |
4959 | 5756 | 1.598882 | GCTCAAAGGCAGGGTATAGC | 58.401 | 55.000 | 0.00 | 0.00 | 0.00 | 2.97 |
4960 | 5757 | 1.134098 | GCTCAAAGGCAGGGTATAGCA | 60.134 | 52.381 | 4.02 | 0.00 | 0.00 | 3.49 |
4961 | 5758 | 2.843701 | CTCAAAGGCAGGGTATAGCAG | 58.156 | 52.381 | 4.02 | 0.00 | 0.00 | 4.24 |
4962 | 5759 | 1.490490 | TCAAAGGCAGGGTATAGCAGG | 59.510 | 52.381 | 4.02 | 0.00 | 0.00 | 4.85 |
4963 | 5760 | 0.846693 | AAAGGCAGGGTATAGCAGGG | 59.153 | 55.000 | 4.02 | 0.00 | 0.00 | 4.45 |
4964 | 5761 | 0.030092 | AAGGCAGGGTATAGCAGGGA | 60.030 | 55.000 | 4.02 | 0.00 | 0.00 | 4.20 |
4965 | 5762 | 0.194587 | AGGCAGGGTATAGCAGGGAT | 59.805 | 55.000 | 4.02 | 0.00 | 0.00 | 3.85 |
4966 | 5763 | 1.068121 | GGCAGGGTATAGCAGGGATT | 58.932 | 55.000 | 4.02 | 0.00 | 0.00 | 3.01 |
4967 | 5764 | 1.271597 | GGCAGGGTATAGCAGGGATTG | 60.272 | 57.143 | 4.02 | 0.00 | 0.00 | 2.67 |
4975 | 5772 | 4.301505 | GCAGGGATTGCGAAGTCA | 57.698 | 55.556 | 0.00 | 0.00 | 44.09 | 3.41 |
4976 | 5773 | 2.093216 | GCAGGGATTGCGAAGTCAG | 58.907 | 57.895 | 0.00 | 0.00 | 44.09 | 3.51 |
4977 | 5774 | 0.391661 | GCAGGGATTGCGAAGTCAGA | 60.392 | 55.000 | 0.00 | 0.00 | 44.09 | 3.27 |
4978 | 5775 | 1.649664 | CAGGGATTGCGAAGTCAGAG | 58.350 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4979 | 5776 | 0.539051 | AGGGATTGCGAAGTCAGAGG | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4980 | 5777 | 0.537188 | GGGATTGCGAAGTCAGAGGA | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4981 | 5778 | 1.139853 | GGGATTGCGAAGTCAGAGGAT | 59.860 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
4982 | 5779 | 2.478831 | GGATTGCGAAGTCAGAGGATC | 58.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
4983 | 5780 | 2.478831 | GATTGCGAAGTCAGAGGATCC | 58.521 | 52.381 | 2.48 | 2.48 | 33.66 | 3.36 |
4984 | 5781 | 1.266178 | TTGCGAAGTCAGAGGATCCA | 58.734 | 50.000 | 15.82 | 0.00 | 33.66 | 3.41 |
4985 | 5782 | 1.489481 | TGCGAAGTCAGAGGATCCAT | 58.511 | 50.000 | 15.82 | 0.00 | 33.66 | 3.41 |
4986 | 5783 | 1.137675 | TGCGAAGTCAGAGGATCCATG | 59.862 | 52.381 | 15.82 | 12.51 | 33.66 | 3.66 |
4987 | 5784 | 1.137872 | GCGAAGTCAGAGGATCCATGT | 59.862 | 52.381 | 15.82 | 0.00 | 33.66 | 3.21 |
4988 | 5785 | 2.801342 | GCGAAGTCAGAGGATCCATGTC | 60.801 | 54.545 | 15.82 | 10.03 | 33.66 | 3.06 |
4989 | 5786 | 2.223923 | CGAAGTCAGAGGATCCATGTCC | 60.224 | 54.545 | 15.82 | 7.71 | 38.62 | 4.02 |
5017 | 5814 | 5.505654 | CCAGATGCGTTTTTAGAAGTTGTGT | 60.506 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
5038 | 5835 | 6.945435 | TGTGTATCAGTTTGTACAAATGGGAT | 59.055 | 34.615 | 23.11 | 23.44 | 33.05 | 3.85 |
5047 | 5844 | 5.999205 | TGTACAAATGGGATCTGCATTTT | 57.001 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
5065 | 5862 | 7.669427 | TGCATTTTTGGATTGAACTGTCTAAT | 58.331 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
5067 | 5864 | 9.638239 | GCATTTTTGGATTGAACTGTCTAATTA | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5076 | 5873 | 7.391148 | TTGAACTGTCTAATTAATCAAGCCC | 57.609 | 36.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5101 | 5898 | 8.494433 | CCTTATAGGCTAGCAATATGGGATAAA | 58.506 | 37.037 | 18.24 | 3.88 | 0.00 | 1.40 |
5114 | 5911 | 4.634012 | TGGGATAAAAGATGATACCCCG | 57.366 | 45.455 | 0.00 | 0.00 | 35.42 | 5.73 |
5142 | 5939 | 5.365403 | TGTTGCGGTAATCCTGTTAAAAG | 57.635 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
5225 | 6022 | 8.421784 | AGTATTCTCAGTCGGATTTGCTAATTA | 58.578 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5228 | 6025 | 6.816136 | TCTCAGTCGGATTTGCTAATTATCA | 58.184 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
5229 | 6026 | 7.445121 | TCTCAGTCGGATTTGCTAATTATCAT | 58.555 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
5230 | 6027 | 7.600375 | TCTCAGTCGGATTTGCTAATTATCATC | 59.400 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
5231 | 6028 | 7.445121 | TCAGTCGGATTTGCTAATTATCATCT | 58.555 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
5232 | 6029 | 7.386025 | TCAGTCGGATTTGCTAATTATCATCTG | 59.614 | 37.037 | 0.00 | 1.48 | 0.00 | 2.90 |
5233 | 6030 | 6.652481 | AGTCGGATTTGCTAATTATCATCTGG | 59.348 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
5234 | 6031 | 6.650807 | GTCGGATTTGCTAATTATCATCTGGA | 59.349 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
5235 | 6032 | 7.335422 | GTCGGATTTGCTAATTATCATCTGGAT | 59.665 | 37.037 | 0.00 | 0.00 | 40.14 | 3.41 |
5236 | 6033 | 8.539544 | TCGGATTTGCTAATTATCATCTGGATA | 58.460 | 33.333 | 0.00 | 0.00 | 37.44 | 2.59 |
5263 | 6060 | 8.261522 | AGGATTAACAAAGTCTCATCTAACTCC | 58.738 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
5273 | 6070 | 6.670027 | AGTCTCATCTAACTCCTACACCAATT | 59.330 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
5274 | 6071 | 6.758886 | GTCTCATCTAACTCCTACACCAATTG | 59.241 | 42.308 | 0.00 | 0.00 | 0.00 | 2.32 |
5275 | 6072 | 6.667848 | TCTCATCTAACTCCTACACCAATTGA | 59.332 | 38.462 | 7.12 | 0.00 | 0.00 | 2.57 |
5276 | 6073 | 7.345653 | TCTCATCTAACTCCTACACCAATTGAT | 59.654 | 37.037 | 7.12 | 0.00 | 0.00 | 2.57 |
5277 | 6074 | 7.861629 | TCATCTAACTCCTACACCAATTGATT | 58.138 | 34.615 | 7.12 | 0.00 | 0.00 | 2.57 |
5278 | 6075 | 8.988060 | TCATCTAACTCCTACACCAATTGATTA | 58.012 | 33.333 | 7.12 | 0.00 | 0.00 | 1.75 |
5279 | 6076 | 9.613428 | CATCTAACTCCTACACCAATTGATTAA | 57.387 | 33.333 | 7.12 | 0.00 | 0.00 | 1.40 |
5285 | 6082 | 9.614792 | ACTCCTACACCAATTGATTAATAGAAC | 57.385 | 33.333 | 7.12 | 0.00 | 0.00 | 3.01 |
5286 | 6083 | 9.613428 | CTCCTACACCAATTGATTAATAGAACA | 57.387 | 33.333 | 7.12 | 0.00 | 0.00 | 3.18 |
5287 | 6084 | 9.967451 | TCCTACACCAATTGATTAATAGAACAA | 57.033 | 29.630 | 7.12 | 0.00 | 0.00 | 2.83 |
5322 | 6119 | 3.508744 | AAAATCCACATGAATCACCGC | 57.491 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 |
5323 | 6120 | 1.016627 | AATCCACATGAATCACCGCG | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 6.46 |
5324 | 6121 | 0.107703 | ATCCACATGAATCACCGCGT | 60.108 | 50.000 | 4.92 | 0.00 | 0.00 | 6.01 |
5325 | 6122 | 0.533032 | TCCACATGAATCACCGCGTA | 59.467 | 50.000 | 4.92 | 0.00 | 0.00 | 4.42 |
5326 | 6123 | 1.066787 | TCCACATGAATCACCGCGTAA | 60.067 | 47.619 | 4.92 | 0.00 | 0.00 | 3.18 |
5327 | 6124 | 1.735018 | CCACATGAATCACCGCGTAAA | 59.265 | 47.619 | 4.92 | 0.00 | 0.00 | 2.01 |
5328 | 6125 | 2.160615 | CCACATGAATCACCGCGTAAAA | 59.839 | 45.455 | 4.92 | 0.00 | 0.00 | 1.52 |
5329 | 6126 | 3.181501 | CCACATGAATCACCGCGTAAAAT | 60.182 | 43.478 | 4.92 | 0.00 | 0.00 | 1.82 |
5330 | 6127 | 4.028383 | CACATGAATCACCGCGTAAAATC | 58.972 | 43.478 | 4.92 | 0.00 | 0.00 | 2.17 |
5331 | 6128 | 3.687212 | ACATGAATCACCGCGTAAAATCA | 59.313 | 39.130 | 4.92 | 4.40 | 0.00 | 2.57 |
5332 | 6129 | 4.155099 | ACATGAATCACCGCGTAAAATCAA | 59.845 | 37.500 | 4.92 | 0.00 | 0.00 | 2.57 |
5333 | 6130 | 4.750952 | TGAATCACCGCGTAAAATCAAA | 57.249 | 36.364 | 4.92 | 0.00 | 0.00 | 2.69 |
5334 | 6131 | 5.303747 | TGAATCACCGCGTAAAATCAAAT | 57.696 | 34.783 | 4.92 | 0.00 | 0.00 | 2.32 |
5335 | 6132 | 5.092105 | TGAATCACCGCGTAAAATCAAATG | 58.908 | 37.500 | 4.92 | 0.00 | 0.00 | 2.32 |
5336 | 6133 | 3.479505 | TCACCGCGTAAAATCAAATGG | 57.520 | 42.857 | 4.92 | 0.00 | 0.00 | 3.16 |
5337 | 6134 | 2.814919 | TCACCGCGTAAAATCAAATGGT | 59.185 | 40.909 | 4.92 | 0.00 | 0.00 | 3.55 |
5338 | 6135 | 4.001652 | TCACCGCGTAAAATCAAATGGTA | 58.998 | 39.130 | 4.92 | 0.00 | 0.00 | 3.25 |
5339 | 6136 | 4.636648 | TCACCGCGTAAAATCAAATGGTAT | 59.363 | 37.500 | 4.92 | 0.00 | 0.00 | 2.73 |
5340 | 6137 | 5.816258 | TCACCGCGTAAAATCAAATGGTATA | 59.184 | 36.000 | 4.92 | 0.00 | 0.00 | 1.47 |
5341 | 6138 | 6.018588 | TCACCGCGTAAAATCAAATGGTATAG | 60.019 | 38.462 | 4.92 | 0.00 | 0.00 | 1.31 |
5342 | 6139 | 5.237779 | ACCGCGTAAAATCAAATGGTATAGG | 59.762 | 40.000 | 4.92 | 0.00 | 0.00 | 2.57 |
5343 | 6140 | 5.237779 | CCGCGTAAAATCAAATGGTATAGGT | 59.762 | 40.000 | 4.92 | 0.00 | 0.00 | 3.08 |
5344 | 6141 | 6.133392 | CGCGTAAAATCAAATGGTATAGGTG | 58.867 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5345 | 6142 | 6.238266 | CGCGTAAAATCAAATGGTATAGGTGT | 60.238 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
5346 | 6143 | 7.477494 | GCGTAAAATCAAATGGTATAGGTGTT | 58.523 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
5347 | 6144 | 8.614346 | GCGTAAAATCAAATGGTATAGGTGTTA | 58.386 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
5389 | 6186 | 5.207110 | TCATCTAAATGAGAGCTAGCCAC | 57.793 | 43.478 | 12.13 | 6.24 | 36.98 | 5.01 |
5390 | 6187 | 4.651045 | TCATCTAAATGAGAGCTAGCCACA | 59.349 | 41.667 | 12.13 | 9.75 | 36.98 | 4.17 |
5391 | 6188 | 4.392921 | TCTAAATGAGAGCTAGCCACAC | 57.607 | 45.455 | 12.13 | 5.59 | 0.00 | 3.82 |
5392 | 6189 | 4.026744 | TCTAAATGAGAGCTAGCCACACT | 58.973 | 43.478 | 12.13 | 6.07 | 0.00 | 3.55 |
5393 | 6190 | 2.977772 | AATGAGAGCTAGCCACACTC | 57.022 | 50.000 | 12.13 | 15.00 | 0.00 | 3.51 |
5394 | 6191 | 1.857965 | ATGAGAGCTAGCCACACTCA | 58.142 | 50.000 | 23.42 | 23.42 | 40.88 | 3.41 |
5395 | 6192 | 1.857965 | TGAGAGCTAGCCACACTCAT | 58.142 | 50.000 | 19.92 | 0.00 | 33.57 | 2.90 |
5396 | 6193 | 2.182827 | TGAGAGCTAGCCACACTCATT | 58.817 | 47.619 | 19.92 | 0.00 | 33.57 | 2.57 |
5397 | 6194 | 2.167281 | TGAGAGCTAGCCACACTCATTC | 59.833 | 50.000 | 19.92 | 6.97 | 33.57 | 2.67 |
5398 | 6195 | 2.430332 | GAGAGCTAGCCACACTCATTCT | 59.570 | 50.000 | 12.13 | 3.90 | 32.71 | 2.40 |
5399 | 6196 | 3.634448 | GAGAGCTAGCCACACTCATTCTA | 59.366 | 47.826 | 12.13 | 0.00 | 32.71 | 2.10 |
5400 | 6197 | 4.222336 | AGAGCTAGCCACACTCATTCTAT | 58.778 | 43.478 | 12.13 | 0.00 | 32.71 | 1.98 |
5401 | 6198 | 5.389520 | AGAGCTAGCCACACTCATTCTATA | 58.610 | 41.667 | 12.13 | 0.00 | 32.71 | 1.31 |
5402 | 6199 | 5.242838 | AGAGCTAGCCACACTCATTCTATAC | 59.757 | 44.000 | 12.13 | 0.00 | 32.71 | 1.47 |
5403 | 6200 | 5.144100 | AGCTAGCCACACTCATTCTATACT | 58.856 | 41.667 | 12.13 | 0.00 | 0.00 | 2.12 |
5404 | 6201 | 5.600484 | AGCTAGCCACACTCATTCTATACTT | 59.400 | 40.000 | 12.13 | 0.00 | 0.00 | 2.24 |
5405 | 6202 | 6.778069 | AGCTAGCCACACTCATTCTATACTTA | 59.222 | 38.462 | 12.13 | 0.00 | 0.00 | 2.24 |
5406 | 6203 | 6.864165 | GCTAGCCACACTCATTCTATACTTAC | 59.136 | 42.308 | 2.29 | 0.00 | 0.00 | 2.34 |
5407 | 6204 | 6.791867 | AGCCACACTCATTCTATACTTACA | 57.208 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
5408 | 6205 | 6.574350 | AGCCACACTCATTCTATACTTACAC | 58.426 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5409 | 6206 | 6.381420 | AGCCACACTCATTCTATACTTACACT | 59.619 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
5410 | 6207 | 7.042335 | GCCACACTCATTCTATACTTACACTT | 58.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
5411 | 6208 | 7.549488 | GCCACACTCATTCTATACTTACACTTT | 59.451 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
47 | 48 | 6.147864 | TGCAGCAGTAACAAAAAGATTCTT | 57.852 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
69 | 70 | 7.589958 | ATTAGACAAGGAGATACTACCACTG | 57.410 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
92 | 93 | 9.927081 | ATTCCTACACAAAGATTGGAGATTAAT | 57.073 | 29.630 | 0.00 | 0.00 | 34.12 | 1.40 |
116 | 117 | 8.836735 | TCTCCCTATTTAAGTCTCCAAGAAATT | 58.163 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
184 | 187 | 7.382218 | CCACAGTCCAACAGTTTGAAATAAATC | 59.618 | 37.037 | 0.00 | 0.00 | 34.24 | 2.17 |
220 | 223 | 3.348119 | CAGTGCTAGTAGTGAGACCTGA | 58.652 | 50.000 | 9.89 | 0.00 | 0.00 | 3.86 |
298 | 301 | 7.771826 | GCCTGTAACTTGGATTGGTTACTATTA | 59.228 | 37.037 | 14.25 | 0.00 | 44.46 | 0.98 |
300 | 303 | 6.069615 | AGCCTGTAACTTGGATTGGTTACTAT | 60.070 | 38.462 | 14.25 | 0.15 | 44.46 | 2.12 |
408 | 998 | 2.487372 | GCAGCCAGGAGAAAGAAAAGAG | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
480 | 1076 | 2.621055 | ACCAACGTCTAATTGCTTTGCA | 59.379 | 40.909 | 0.00 | 0.00 | 36.47 | 4.08 |
533 | 1129 | 1.541169 | ACCCATTGGTGGTTGAGCA | 59.459 | 52.632 | 1.20 | 0.00 | 45.58 | 4.26 |
534 | 1130 | 4.519610 | ACCCATTGGTGGTTGAGC | 57.480 | 55.556 | 1.20 | 0.00 | 45.58 | 4.26 |
608 | 1204 | 0.260230 | CTCTCCTCTGGCCTCTACCA | 59.740 | 60.000 | 3.32 | 0.00 | 38.29 | 3.25 |
609 | 1205 | 0.260523 | ACTCTCCTCTGGCCTCTACC | 59.739 | 60.000 | 3.32 | 0.00 | 0.00 | 3.18 |
612 | 1208 | 1.003646 | TGTACTCTCCTCTGGCCTCT | 58.996 | 55.000 | 3.32 | 0.00 | 0.00 | 3.69 |
613 | 1209 | 1.960689 | GATGTACTCTCCTCTGGCCTC | 59.039 | 57.143 | 3.32 | 0.00 | 0.00 | 4.70 |
614 | 1210 | 1.573376 | AGATGTACTCTCCTCTGGCCT | 59.427 | 52.381 | 3.32 | 0.00 | 0.00 | 5.19 |
615 | 1211 | 1.686052 | CAGATGTACTCTCCTCTGGCC | 59.314 | 57.143 | 0.00 | 0.00 | 33.15 | 5.36 |
616 | 1212 | 2.660572 | TCAGATGTACTCTCCTCTGGC | 58.339 | 52.381 | 0.00 | 0.00 | 36.59 | 4.85 |
617 | 1213 | 4.019858 | TGTTCAGATGTACTCTCCTCTGG | 58.980 | 47.826 | 0.00 | 0.00 | 36.59 | 3.86 |
618 | 1214 | 5.651387 | TTGTTCAGATGTACTCTCCTCTG | 57.349 | 43.478 | 0.00 | 0.00 | 37.14 | 3.35 |
619 | 1215 | 6.865834 | AATTGTTCAGATGTACTCTCCTCT | 57.134 | 37.500 | 0.00 | 0.00 | 29.16 | 3.69 |
620 | 1216 | 6.536941 | GGAAATTGTTCAGATGTACTCTCCTC | 59.463 | 42.308 | 0.00 | 0.00 | 35.25 | 3.71 |
621 | 1217 | 6.214412 | AGGAAATTGTTCAGATGTACTCTCCT | 59.786 | 38.462 | 0.00 | 0.00 | 35.25 | 3.69 |
622 | 1218 | 6.410540 | AGGAAATTGTTCAGATGTACTCTCC | 58.589 | 40.000 | 0.00 | 0.00 | 35.25 | 3.71 |
623 | 1219 | 7.708752 | CCTAGGAAATTGTTCAGATGTACTCTC | 59.291 | 40.741 | 1.05 | 0.00 | 35.25 | 3.20 |
771 | 1388 | 0.923358 | GAGTGAGAGAGAGGGGAGGA | 59.077 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
839 | 1469 | 3.002759 | GCTTATGTTGCAAGCCTAGTAGC | 59.997 | 47.826 | 0.00 | 0.00 | 42.08 | 3.58 |
842 | 1472 | 3.071874 | TGCTTATGTTGCAAGCCTAGT | 57.928 | 42.857 | 0.00 | 0.00 | 46.32 | 2.57 |
901 | 1531 | 4.569966 | CAGCAGCTAACTCTACAGAATTGG | 59.430 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
923 | 1553 | 2.567169 | ACATGAGTACAAGGTAGCAGCA | 59.433 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
927 | 1557 | 4.093556 | GCAAGAACATGAGTACAAGGTAGC | 59.906 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
955 | 1585 | 4.242475 | CATGCAACTACCGAAGTACAAGA | 58.758 | 43.478 | 0.00 | 0.00 | 37.50 | 3.02 |
1537 | 2179 | 1.409427 | GCCTAGCTGGTTGTCGTAGAT | 59.591 | 52.381 | 0.00 | 0.00 | 37.14 | 1.98 |
1665 | 2307 | 2.187946 | CCGACCATGGTGAGCCTC | 59.812 | 66.667 | 25.52 | 5.40 | 35.27 | 4.70 |
2256 | 2898 | 0.741221 | GAGCATTGGTCGACAGGTCC | 60.741 | 60.000 | 18.91 | 0.00 | 0.00 | 4.46 |
2619 | 3261 | 2.254152 | TGGCATTGTAGGAGAGGTCT | 57.746 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2675 | 3317 | 4.756642 | TGAGAATGAGCTTTGTCAACGAAT | 59.243 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
2730 | 3372 | 2.485795 | GGAGCACGAGCCGATCTCT | 61.486 | 63.158 | 0.00 | 0.00 | 43.56 | 3.10 |
2751 | 3393 | 1.745864 | GACGTCGAGGAGCTGGAGA | 60.746 | 63.158 | 12.85 | 0.00 | 0.00 | 3.71 |
2841 | 3483 | 1.669115 | GAAGCGGTTGCAGCTGAGA | 60.669 | 57.895 | 20.43 | 0.77 | 45.31 | 3.27 |
2854 | 3496 | 2.656651 | CATCGAGCCGGAGAAGCG | 60.657 | 66.667 | 5.05 | 0.00 | 34.64 | 4.68 |
3042 | 3684 | 4.052229 | CCCTCGACGTCGCTGGTT | 62.052 | 66.667 | 32.02 | 0.00 | 39.60 | 3.67 |
3183 | 3825 | 3.575351 | GAACAGGACGAGCACCGCT | 62.575 | 63.158 | 0.00 | 0.00 | 43.88 | 5.52 |
3498 | 4158 | 2.268920 | GACGCCCATCCAAGCAGA | 59.731 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
3531 | 4191 | 3.469739 | GAGGTAGTCGTAGAAGAGGAGG | 58.530 | 54.545 | 0.00 | 0.00 | 39.69 | 4.30 |
3910 | 4574 | 8.483307 | TGTTAATCCGGTAGTTCATCTTTTAC | 57.517 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
3965 | 4684 | 2.557924 | GGTTGTGATCTTGGTCATGCAA | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
4007 | 4726 | 3.480679 | CTCCAGCAGCACCACACCA | 62.481 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
4010 | 4729 | 1.002990 | CATCTCCAGCAGCACCACA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 4.17 |
4175 | 4894 | 2.753043 | CCGAGGGCTTGCAGCATT | 60.753 | 61.111 | 0.00 | 0.00 | 44.75 | 3.56 |
4497 | 5246 | 9.117183 | CCCCTAATAATAAAGTACACAAGGTTC | 57.883 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
4514 | 5263 | 7.293062 | ACATAATTTCTACGGGTCCCCTAATAA | 59.707 | 37.037 | 1.00 | 0.00 | 0.00 | 1.40 |
4515 | 5264 | 6.788957 | ACATAATTTCTACGGGTCCCCTAATA | 59.211 | 38.462 | 1.00 | 0.00 | 0.00 | 0.98 |
4516 | 5265 | 5.609708 | ACATAATTTCTACGGGTCCCCTAAT | 59.390 | 40.000 | 1.00 | 0.00 | 0.00 | 1.73 |
4517 | 5266 | 4.970640 | ACATAATTTCTACGGGTCCCCTAA | 59.029 | 41.667 | 1.00 | 0.00 | 0.00 | 2.69 |
4518 | 5267 | 4.559726 | ACATAATTTCTACGGGTCCCCTA | 58.440 | 43.478 | 1.00 | 0.00 | 0.00 | 3.53 |
4519 | 5268 | 3.390819 | ACATAATTTCTACGGGTCCCCT | 58.609 | 45.455 | 1.00 | 0.00 | 0.00 | 4.79 |
4630 | 5391 | 4.907269 | TCCTATGATCACTAAATCCCTGCA | 59.093 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
4632 | 5393 | 7.180946 | TGGTATCCTATGATCACTAAATCCCTG | 59.819 | 40.741 | 0.00 | 0.00 | 32.18 | 4.45 |
4660 | 5421 | 0.755686 | CCCTGCTGGACCATCTAGAC | 59.244 | 60.000 | 11.88 | 0.00 | 35.39 | 2.59 |
4781 | 5542 | 3.057946 | GTGCTCCCTTTGACAAACATCTC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
4846 | 5643 | 0.033228 | GATCCTCGTCCATCTGGCTG | 59.967 | 60.000 | 0.00 | 0.00 | 34.44 | 4.85 |
4847 | 5644 | 1.118356 | GGATCCTCGTCCATCTGGCT | 61.118 | 60.000 | 3.84 | 0.00 | 38.20 | 4.75 |
4848 | 5645 | 1.369321 | GGATCCTCGTCCATCTGGC | 59.631 | 63.158 | 3.84 | 0.00 | 38.20 | 4.85 |
4849 | 5646 | 1.476007 | GGGGATCCTCGTCCATCTGG | 61.476 | 65.000 | 12.58 | 0.00 | 40.17 | 3.86 |
4850 | 5647 | 0.470833 | AGGGGATCCTCGTCCATCTG | 60.471 | 60.000 | 12.58 | 0.00 | 39.80 | 2.90 |
4851 | 5648 | 0.470833 | CAGGGGATCCTCGTCCATCT | 60.471 | 60.000 | 12.58 | 0.00 | 42.67 | 2.90 |
4852 | 5649 | 2.053618 | CAGGGGATCCTCGTCCATC | 58.946 | 63.158 | 12.58 | 0.00 | 42.67 | 3.51 |
4853 | 5650 | 2.143419 | GCAGGGGATCCTCGTCCAT | 61.143 | 63.158 | 12.58 | 0.00 | 42.67 | 3.41 |
4854 | 5651 | 2.764128 | GCAGGGGATCCTCGTCCA | 60.764 | 66.667 | 12.58 | 0.00 | 42.67 | 4.02 |
4855 | 5652 | 2.444895 | AGCAGGGGATCCTCGTCC | 60.445 | 66.667 | 12.58 | 3.97 | 42.67 | 4.79 |
4856 | 5653 | 2.060980 | ACAGCAGGGGATCCTCGTC | 61.061 | 63.158 | 12.58 | 4.80 | 42.67 | 4.20 |
4857 | 5654 | 2.039624 | ACAGCAGGGGATCCTCGT | 59.960 | 61.111 | 12.58 | 0.00 | 42.67 | 4.18 |
4858 | 5655 | 2.503061 | CACAGCAGGGGATCCTCG | 59.497 | 66.667 | 12.58 | 5.37 | 42.67 | 4.63 |
4859 | 5656 | 2.191641 | GCACAGCAGGGGATCCTC | 59.808 | 66.667 | 12.58 | 7.90 | 42.67 | 3.71 |
4860 | 5657 | 3.415087 | GGCACAGCAGGGGATCCT | 61.415 | 66.667 | 12.58 | 0.00 | 46.26 | 3.24 |
4861 | 5658 | 4.512914 | GGGCACAGCAGGGGATCC | 62.513 | 72.222 | 1.92 | 1.92 | 0.00 | 3.36 |
4862 | 5659 | 4.512914 | GGGGCACAGCAGGGGATC | 62.513 | 72.222 | 0.00 | 0.00 | 0.00 | 3.36 |
4872 | 5669 | 2.160171 | AAAGGTAGGCTGGGGCACA | 61.160 | 57.895 | 0.00 | 0.00 | 40.87 | 4.57 |
4873 | 5670 | 1.678970 | CAAAGGTAGGCTGGGGCAC | 60.679 | 63.158 | 0.00 | 0.00 | 40.87 | 5.01 |
4874 | 5671 | 1.850289 | TCAAAGGTAGGCTGGGGCA | 60.850 | 57.895 | 0.00 | 0.00 | 40.87 | 5.36 |
4875 | 5672 | 1.077429 | CTCAAAGGTAGGCTGGGGC | 60.077 | 63.158 | 0.00 | 0.00 | 37.82 | 5.80 |
4876 | 5673 | 0.253327 | GACTCAAAGGTAGGCTGGGG | 59.747 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
4877 | 5674 | 0.984230 | TGACTCAAAGGTAGGCTGGG | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4878 | 5675 | 1.625818 | AGTGACTCAAAGGTAGGCTGG | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
4879 | 5676 | 2.300152 | TCAGTGACTCAAAGGTAGGCTG | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4880 | 5677 | 2.300437 | GTCAGTGACTCAAAGGTAGGCT | 59.700 | 50.000 | 16.26 | 0.00 | 0.00 | 4.58 |
4881 | 5678 | 2.037251 | TGTCAGTGACTCAAAGGTAGGC | 59.963 | 50.000 | 23.29 | 0.00 | 33.15 | 3.93 |
4882 | 5679 | 3.069586 | TGTGTCAGTGACTCAAAGGTAGG | 59.930 | 47.826 | 22.30 | 0.00 | 33.95 | 3.18 |
4883 | 5680 | 4.322080 | TGTGTCAGTGACTCAAAGGTAG | 57.678 | 45.455 | 22.30 | 0.00 | 33.95 | 3.18 |
4884 | 5681 | 4.503123 | CCATGTGTCAGTGACTCAAAGGTA | 60.503 | 45.833 | 26.67 | 7.51 | 39.05 | 3.08 |
4885 | 5682 | 3.470709 | CATGTGTCAGTGACTCAAAGGT | 58.529 | 45.455 | 26.67 | 11.61 | 39.05 | 3.50 |
4886 | 5683 | 2.810274 | CCATGTGTCAGTGACTCAAAGG | 59.190 | 50.000 | 26.67 | 25.08 | 39.05 | 3.11 |
4887 | 5684 | 2.810274 | CCCATGTGTCAGTGACTCAAAG | 59.190 | 50.000 | 26.67 | 21.50 | 39.05 | 2.77 |
4888 | 5685 | 2.172505 | ACCCATGTGTCAGTGACTCAAA | 59.827 | 45.455 | 26.67 | 9.46 | 39.05 | 2.69 |
4889 | 5686 | 1.768275 | ACCCATGTGTCAGTGACTCAA | 59.232 | 47.619 | 26.67 | 12.54 | 39.05 | 3.02 |
4890 | 5687 | 1.344438 | GACCCATGTGTCAGTGACTCA | 59.656 | 52.381 | 25.52 | 25.52 | 39.71 | 3.41 |
4891 | 5688 | 1.338200 | GGACCCATGTGTCAGTGACTC | 60.338 | 57.143 | 23.29 | 19.84 | 36.97 | 3.36 |
4892 | 5689 | 0.687354 | GGACCCATGTGTCAGTGACT | 59.313 | 55.000 | 23.29 | 1.59 | 36.97 | 3.41 |
4893 | 5690 | 0.321653 | GGGACCCATGTGTCAGTGAC | 60.322 | 60.000 | 16.68 | 16.68 | 36.97 | 3.67 |
4894 | 5691 | 0.766288 | TGGGACCCATGTGTCAGTGA | 60.766 | 55.000 | 9.95 | 0.00 | 36.97 | 3.41 |
4895 | 5692 | 0.606401 | GTGGGACCCATGTGTCAGTG | 60.606 | 60.000 | 18.51 | 0.00 | 35.28 | 3.66 |
4896 | 5693 | 1.059584 | TGTGGGACCCATGTGTCAGT | 61.060 | 55.000 | 18.51 | 0.00 | 35.28 | 3.41 |
4897 | 5694 | 0.321919 | CTGTGGGACCCATGTGTCAG | 60.322 | 60.000 | 18.51 | 14.85 | 35.28 | 3.51 |
4898 | 5695 | 0.766288 | TCTGTGGGACCCATGTGTCA | 60.766 | 55.000 | 18.51 | 8.62 | 35.28 | 3.58 |
4899 | 5696 | 0.036010 | CTCTGTGGGACCCATGTGTC | 60.036 | 60.000 | 18.51 | 3.49 | 35.28 | 3.67 |
4900 | 5697 | 2.069776 | CTCTGTGGGACCCATGTGT | 58.930 | 57.895 | 18.51 | 0.00 | 35.28 | 3.72 |
4901 | 5698 | 1.377725 | GCTCTGTGGGACCCATGTG | 60.378 | 63.158 | 18.51 | 14.22 | 35.28 | 3.21 |
4902 | 5699 | 1.210204 | ATGCTCTGTGGGACCCATGT | 61.210 | 55.000 | 18.51 | 0.00 | 35.28 | 3.21 |
4903 | 5700 | 0.750546 | CATGCTCTGTGGGACCCATG | 60.751 | 60.000 | 18.51 | 13.14 | 35.28 | 3.66 |
4904 | 5701 | 1.611419 | CATGCTCTGTGGGACCCAT | 59.389 | 57.895 | 18.51 | 0.00 | 35.28 | 4.00 |
4905 | 5702 | 2.605607 | CCATGCTCTGTGGGACCCA | 61.606 | 63.158 | 9.95 | 9.95 | 32.98 | 4.51 |
4906 | 5703 | 2.273449 | CCATGCTCTGTGGGACCC | 59.727 | 66.667 | 2.45 | 2.45 | 32.98 | 4.46 |
4911 | 5708 | 4.828296 | GGGCCCCATGCTCTGTGG | 62.828 | 72.222 | 12.23 | 0.00 | 37.53 | 4.17 |
4912 | 5709 | 4.051167 | TGGGCCCCATGCTCTGTG | 62.051 | 66.667 | 22.27 | 0.00 | 42.79 | 3.66 |
4913 | 5710 | 4.052518 | GTGGGCCCCATGCTCTGT | 62.053 | 66.667 | 22.27 | 0.00 | 42.79 | 3.41 |
4914 | 5711 | 4.828296 | GGTGGGCCCCATGCTCTG | 62.828 | 72.222 | 22.27 | 0.00 | 42.79 | 3.35 |
4916 | 5713 | 4.828296 | CAGGTGGGCCCCATGCTC | 62.828 | 72.222 | 22.27 | 1.93 | 42.61 | 4.26 |
4919 | 5716 | 3.650298 | CTGACAGGTGGGCCCCATG | 62.650 | 68.421 | 22.27 | 20.55 | 35.28 | 3.66 |
4920 | 5717 | 3.341629 | CTGACAGGTGGGCCCCAT | 61.342 | 66.667 | 22.27 | 5.27 | 35.28 | 4.00 |
4921 | 5718 | 4.918360 | ACTGACAGGTGGGCCCCA | 62.918 | 66.667 | 22.27 | 7.77 | 34.57 | 4.96 |
4922 | 5719 | 4.351054 | CACTGACAGGTGGGCCCC | 62.351 | 72.222 | 22.27 | 10.91 | 33.95 | 5.80 |
4928 | 5725 | 1.233019 | CTTTGAGCCACTGACAGGTG | 58.767 | 55.000 | 7.51 | 2.99 | 37.00 | 4.00 |
4929 | 5726 | 0.109342 | CCTTTGAGCCACTGACAGGT | 59.891 | 55.000 | 7.51 | 0.00 | 0.00 | 4.00 |
4930 | 5727 | 1.239968 | GCCTTTGAGCCACTGACAGG | 61.240 | 60.000 | 7.51 | 0.00 | 0.00 | 4.00 |
4931 | 5728 | 0.535780 | TGCCTTTGAGCCACTGACAG | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4932 | 5729 | 0.535780 | CTGCCTTTGAGCCACTGACA | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4933 | 5730 | 1.239968 | CCTGCCTTTGAGCCACTGAC | 61.240 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4934 | 5731 | 1.073722 | CCTGCCTTTGAGCCACTGA | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
4935 | 5732 | 1.975407 | CCCTGCCTTTGAGCCACTG | 60.975 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
4936 | 5733 | 1.133809 | TACCCTGCCTTTGAGCCACT | 61.134 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4937 | 5734 | 0.034089 | ATACCCTGCCTTTGAGCCAC | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
4938 | 5735 | 1.490490 | CTATACCCTGCCTTTGAGCCA | 59.510 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
4939 | 5736 | 1.815795 | GCTATACCCTGCCTTTGAGCC | 60.816 | 57.143 | 0.00 | 0.00 | 0.00 | 4.70 |
4940 | 5737 | 1.134098 | TGCTATACCCTGCCTTTGAGC | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
4941 | 5738 | 2.486191 | CCTGCTATACCCTGCCTTTGAG | 60.486 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
4942 | 5739 | 1.490490 | CCTGCTATACCCTGCCTTTGA | 59.510 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
4943 | 5740 | 1.477558 | CCCTGCTATACCCTGCCTTTG | 60.478 | 57.143 | 0.00 | 0.00 | 0.00 | 2.77 |
4944 | 5741 | 0.846693 | CCCTGCTATACCCTGCCTTT | 59.153 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
4945 | 5742 | 0.030092 | TCCCTGCTATACCCTGCCTT | 60.030 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4946 | 5743 | 0.194587 | ATCCCTGCTATACCCTGCCT | 59.805 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
4947 | 5744 | 1.068121 | AATCCCTGCTATACCCTGCC | 58.932 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4948 | 5745 | 2.191128 | CAATCCCTGCTATACCCTGC | 57.809 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4959 | 5756 | 1.649664 | CTCTGACTTCGCAATCCCTG | 58.350 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4960 | 5757 | 0.539051 | CCTCTGACTTCGCAATCCCT | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4961 | 5758 | 0.537188 | TCCTCTGACTTCGCAATCCC | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4962 | 5759 | 2.478831 | GATCCTCTGACTTCGCAATCC | 58.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4963 | 5760 | 2.159043 | TGGATCCTCTGACTTCGCAATC | 60.159 | 50.000 | 14.23 | 0.00 | 0.00 | 2.67 |
4964 | 5761 | 1.833630 | TGGATCCTCTGACTTCGCAAT | 59.166 | 47.619 | 14.23 | 0.00 | 0.00 | 3.56 |
4965 | 5762 | 1.266178 | TGGATCCTCTGACTTCGCAA | 58.734 | 50.000 | 14.23 | 0.00 | 0.00 | 4.85 |
4966 | 5763 | 1.137675 | CATGGATCCTCTGACTTCGCA | 59.862 | 52.381 | 14.23 | 0.00 | 0.00 | 5.10 |
4967 | 5764 | 1.137872 | ACATGGATCCTCTGACTTCGC | 59.862 | 52.381 | 14.23 | 0.00 | 0.00 | 4.70 |
4968 | 5765 | 2.223923 | GGACATGGATCCTCTGACTTCG | 60.224 | 54.545 | 14.23 | 0.00 | 35.68 | 3.79 |
4969 | 5766 | 3.037549 | AGGACATGGATCCTCTGACTTC | 58.962 | 50.000 | 14.23 | 4.69 | 46.92 | 3.01 |
4970 | 5767 | 3.127791 | AGGACATGGATCCTCTGACTT | 57.872 | 47.619 | 14.23 | 4.90 | 46.92 | 3.01 |
4971 | 5768 | 2.864885 | AGGACATGGATCCTCTGACT | 57.135 | 50.000 | 14.23 | 11.02 | 46.92 | 3.41 |
4972 | 5769 | 2.298729 | GCTAGGACATGGATCCTCTGAC | 59.701 | 54.545 | 14.23 | 10.53 | 46.92 | 3.51 |
4973 | 5770 | 2.603021 | GCTAGGACATGGATCCTCTGA | 58.397 | 52.381 | 14.23 | 0.00 | 46.92 | 3.27 |
4974 | 5771 | 1.622811 | GGCTAGGACATGGATCCTCTG | 59.377 | 57.143 | 14.23 | 12.85 | 46.92 | 3.35 |
4975 | 5772 | 1.221523 | TGGCTAGGACATGGATCCTCT | 59.778 | 52.381 | 14.23 | 5.48 | 46.92 | 3.69 |
4976 | 5773 | 1.622811 | CTGGCTAGGACATGGATCCTC | 59.377 | 57.143 | 14.23 | 1.71 | 46.92 | 3.71 |
4978 | 5775 | 1.722034 | TCTGGCTAGGACATGGATCC | 58.278 | 55.000 | 4.20 | 4.20 | 39.28 | 3.36 |
4979 | 5776 | 2.614987 | GCATCTGGCTAGGACATGGATC | 60.615 | 54.545 | 0.00 | 0.00 | 40.25 | 3.36 |
4980 | 5777 | 1.350351 | GCATCTGGCTAGGACATGGAT | 59.650 | 52.381 | 0.00 | 0.00 | 40.25 | 3.41 |
4981 | 5778 | 0.761187 | GCATCTGGCTAGGACATGGA | 59.239 | 55.000 | 0.00 | 0.00 | 40.25 | 3.41 |
4982 | 5779 | 0.602106 | CGCATCTGGCTAGGACATGG | 60.602 | 60.000 | 0.00 | 0.00 | 41.67 | 3.66 |
4983 | 5780 | 0.105593 | ACGCATCTGGCTAGGACATG | 59.894 | 55.000 | 0.00 | 0.00 | 41.67 | 3.21 |
4984 | 5781 | 0.833287 | AACGCATCTGGCTAGGACAT | 59.167 | 50.000 | 0.00 | 0.00 | 41.67 | 3.06 |
4985 | 5782 | 0.613260 | AAACGCATCTGGCTAGGACA | 59.387 | 50.000 | 0.00 | 0.00 | 41.67 | 4.02 |
4986 | 5783 | 1.739067 | AAAACGCATCTGGCTAGGAC | 58.261 | 50.000 | 0.00 | 0.00 | 41.67 | 3.85 |
4987 | 5784 | 2.489938 | AAAAACGCATCTGGCTAGGA | 57.510 | 45.000 | 0.00 | 0.00 | 41.67 | 2.94 |
4988 | 5785 | 3.531538 | TCTAAAAACGCATCTGGCTAGG | 58.468 | 45.455 | 0.00 | 0.00 | 41.67 | 3.02 |
4989 | 5786 | 4.631813 | ACTTCTAAAAACGCATCTGGCTAG | 59.368 | 41.667 | 0.00 | 0.00 | 41.67 | 3.42 |
4992 | 5789 | 3.831715 | ACTTCTAAAAACGCATCTGGC | 57.168 | 42.857 | 0.00 | 0.00 | 39.90 | 4.85 |
5006 | 5803 | 9.602568 | TTTGTACAAACTGATACACAACTTCTA | 57.397 | 29.630 | 17.01 | 0.00 | 31.09 | 2.10 |
5017 | 5814 | 6.318648 | GCAGATCCCATTTGTACAAACTGATA | 59.681 | 38.462 | 26.25 | 16.14 | 32.51 | 2.15 |
5038 | 5835 | 5.302568 | AGACAGTTCAATCCAAAAATGCAGA | 59.697 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5076 | 5873 | 9.905713 | TTTTATCCCATATTGCTAGCCTATAAG | 57.094 | 33.333 | 13.29 | 7.16 | 0.00 | 1.73 |
5091 | 5888 | 5.788533 | ACGGGGTATCATCTTTTATCCCATA | 59.211 | 40.000 | 0.00 | 0.00 | 38.49 | 2.74 |
5101 | 5898 | 2.092429 | ACAATGCACGGGGTATCATCTT | 60.092 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
5125 | 5922 | 5.737290 | CGCATTTCTTTTAACAGGATTACCG | 59.263 | 40.000 | 0.00 | 0.00 | 41.83 | 4.02 |
5133 | 5930 | 6.586082 | ACCTAATTGCGCATTTCTTTTAACAG | 59.414 | 34.615 | 19.84 | 9.79 | 0.00 | 3.16 |
5205 | 6002 | 7.601886 | AGATGATAATTAGCAAATCCGACTGAG | 59.398 | 37.037 | 7.61 | 0.00 | 0.00 | 3.35 |
5207 | 6004 | 7.360691 | CCAGATGATAATTAGCAAATCCGACTG | 60.361 | 40.741 | 7.61 | 8.42 | 0.00 | 3.51 |
5208 | 6005 | 6.652481 | CCAGATGATAATTAGCAAATCCGACT | 59.348 | 38.462 | 7.61 | 0.00 | 0.00 | 4.18 |
5225 | 6022 | 9.566432 | GACTTTGTTAATCCTTATCCAGATGAT | 57.434 | 33.333 | 0.00 | 0.00 | 37.49 | 2.45 |
5228 | 6025 | 8.772250 | TGAGACTTTGTTAATCCTTATCCAGAT | 58.228 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
5229 | 6026 | 8.146053 | TGAGACTTTGTTAATCCTTATCCAGA | 57.854 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
5230 | 6027 | 8.970859 | ATGAGACTTTGTTAATCCTTATCCAG | 57.029 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
5231 | 6028 | 8.772250 | AGATGAGACTTTGTTAATCCTTATCCA | 58.228 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
5236 | 6033 | 9.660180 | GAGTTAGATGAGACTTTGTTAATCCTT | 57.340 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
5301 | 6098 | 3.673052 | CGCGGTGATTCATGTGGATTTTT | 60.673 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
5302 | 6099 | 2.159393 | CGCGGTGATTCATGTGGATTTT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
5303 | 6100 | 1.401552 | CGCGGTGATTCATGTGGATTT | 59.598 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
5304 | 6101 | 1.016627 | CGCGGTGATTCATGTGGATT | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5305 | 6102 | 0.107703 | ACGCGGTGATTCATGTGGAT | 60.108 | 50.000 | 12.47 | 0.00 | 0.00 | 3.41 |
5306 | 6103 | 0.533032 | TACGCGGTGATTCATGTGGA | 59.467 | 50.000 | 12.47 | 0.00 | 0.00 | 4.02 |
5307 | 6104 | 1.364721 | TTACGCGGTGATTCATGTGG | 58.635 | 50.000 | 12.47 | 0.00 | 0.00 | 4.17 |
5308 | 6105 | 3.463533 | TTTTACGCGGTGATTCATGTG | 57.536 | 42.857 | 12.47 | 0.00 | 0.00 | 3.21 |
5309 | 6106 | 3.687212 | TGATTTTACGCGGTGATTCATGT | 59.313 | 39.130 | 12.47 | 0.00 | 0.00 | 3.21 |
5310 | 6107 | 4.271590 | TGATTTTACGCGGTGATTCATG | 57.728 | 40.909 | 12.47 | 0.00 | 0.00 | 3.07 |
5311 | 6108 | 4.955925 | TTGATTTTACGCGGTGATTCAT | 57.044 | 36.364 | 12.47 | 0.00 | 0.00 | 2.57 |
5312 | 6109 | 4.750952 | TTTGATTTTACGCGGTGATTCA | 57.249 | 36.364 | 12.47 | 5.07 | 0.00 | 2.57 |
5313 | 6110 | 4.499040 | CCATTTGATTTTACGCGGTGATTC | 59.501 | 41.667 | 12.47 | 2.10 | 0.00 | 2.52 |
5314 | 6111 | 4.082463 | ACCATTTGATTTTACGCGGTGATT | 60.082 | 37.500 | 12.47 | 0.00 | 0.00 | 2.57 |
5315 | 6112 | 3.442273 | ACCATTTGATTTTACGCGGTGAT | 59.558 | 39.130 | 12.47 | 0.00 | 0.00 | 3.06 |
5316 | 6113 | 2.814919 | ACCATTTGATTTTACGCGGTGA | 59.185 | 40.909 | 12.47 | 0.00 | 0.00 | 4.02 |
5317 | 6114 | 3.210358 | ACCATTTGATTTTACGCGGTG | 57.790 | 42.857 | 12.47 | 0.00 | 0.00 | 4.94 |
5318 | 6115 | 5.237779 | CCTATACCATTTGATTTTACGCGGT | 59.762 | 40.000 | 12.47 | 0.00 | 0.00 | 5.68 |
5319 | 6116 | 5.237779 | ACCTATACCATTTGATTTTACGCGG | 59.762 | 40.000 | 12.47 | 0.00 | 0.00 | 6.46 |
5320 | 6117 | 6.133392 | CACCTATACCATTTGATTTTACGCG | 58.867 | 40.000 | 3.53 | 3.53 | 0.00 | 6.01 |
5321 | 6118 | 7.023197 | ACACCTATACCATTTGATTTTACGC | 57.977 | 36.000 | 0.00 | 0.00 | 0.00 | 4.42 |
5367 | 6164 | 4.651045 | TGTGGCTAGCTCTCATTTAGATGA | 59.349 | 41.667 | 15.72 | 0.00 | 39.92 | 2.92 |
5368 | 6165 | 4.749099 | GTGTGGCTAGCTCTCATTTAGATG | 59.251 | 45.833 | 15.72 | 0.00 | 32.41 | 2.90 |
5369 | 6166 | 4.653341 | AGTGTGGCTAGCTCTCATTTAGAT | 59.347 | 41.667 | 15.72 | 0.00 | 32.41 | 1.98 |
5370 | 6167 | 4.026744 | AGTGTGGCTAGCTCTCATTTAGA | 58.973 | 43.478 | 15.72 | 0.00 | 0.00 | 2.10 |
5371 | 6168 | 4.142071 | TGAGTGTGGCTAGCTCTCATTTAG | 60.142 | 45.833 | 15.72 | 0.00 | 31.51 | 1.85 |
5372 | 6169 | 3.769300 | TGAGTGTGGCTAGCTCTCATTTA | 59.231 | 43.478 | 15.72 | 3.42 | 31.51 | 1.40 |
5373 | 6170 | 2.568956 | TGAGTGTGGCTAGCTCTCATTT | 59.431 | 45.455 | 15.72 | 5.15 | 31.51 | 2.32 |
5374 | 6171 | 2.182827 | TGAGTGTGGCTAGCTCTCATT | 58.817 | 47.619 | 15.72 | 8.57 | 31.51 | 2.57 |
5375 | 6172 | 1.857965 | TGAGTGTGGCTAGCTCTCAT | 58.142 | 50.000 | 15.72 | 0.00 | 31.51 | 2.90 |
5376 | 6173 | 1.857965 | ATGAGTGTGGCTAGCTCTCA | 58.142 | 50.000 | 23.02 | 23.02 | 39.05 | 3.27 |
5377 | 6174 | 2.430332 | AGAATGAGTGTGGCTAGCTCTC | 59.570 | 50.000 | 15.72 | 16.23 | 0.00 | 3.20 |
5378 | 6175 | 2.465813 | AGAATGAGTGTGGCTAGCTCT | 58.534 | 47.619 | 15.72 | 8.19 | 0.00 | 4.09 |
5379 | 6176 | 2.977772 | AGAATGAGTGTGGCTAGCTC | 57.022 | 50.000 | 15.72 | 8.97 | 0.00 | 4.09 |
5380 | 6177 | 5.144100 | AGTATAGAATGAGTGTGGCTAGCT | 58.856 | 41.667 | 15.72 | 0.00 | 0.00 | 3.32 |
5381 | 6178 | 5.461032 | AGTATAGAATGAGTGTGGCTAGC | 57.539 | 43.478 | 6.04 | 6.04 | 0.00 | 3.42 |
5382 | 6179 | 7.863375 | GTGTAAGTATAGAATGAGTGTGGCTAG | 59.137 | 40.741 | 0.00 | 0.00 | 0.00 | 3.42 |
5383 | 6180 | 7.560262 | AGTGTAAGTATAGAATGAGTGTGGCTA | 59.440 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
5384 | 6181 | 6.381420 | AGTGTAAGTATAGAATGAGTGTGGCT | 59.619 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
5385 | 6182 | 6.574350 | AGTGTAAGTATAGAATGAGTGTGGC | 58.426 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.