Multiple sequence alignment - TraesCS1D01G113200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G113200 chr1D 100.000 2675 0 0 1 2675 109579950 109577276 0.000000e+00 4940
1 TraesCS1D01G113200 chr1A 89.208 2020 102 58 547 2503 113252585 113250619 0.000000e+00 2416
2 TraesCS1D01G113200 chr1A 93.785 177 11 0 2499 2675 113248330 113248154 1.580000e-67 267
3 TraesCS1D01G113200 chr1B 91.765 1105 43 16 895 1986 165547888 165546819 0.000000e+00 1493
4 TraesCS1D01G113200 chr1B 86.797 409 42 6 2278 2675 165546376 165545969 1.890000e-121 446
5 TraesCS1D01G113200 chr1B 87.345 403 27 10 410 793 165548621 165548224 8.790000e-120 440
6 TraesCS1D01G113200 chr5D 91.571 261 9 4 965 1224 436205770 436205522 5.480000e-92 348
7 TraesCS1D01G113200 chr5D 85.161 155 17 2 15 163 410370491 410370645 1.280000e-33 154
8 TraesCS1D01G113200 chr3A 84.184 196 27 3 1081 1274 63131098 63131291 1.260000e-43 187
9 TraesCS1D01G113200 chr3A 86.061 165 19 3 1 163 652814056 652814218 9.840000e-40 174
10 TraesCS1D01G113200 chr3D 87.097 155 20 0 1120 1274 49780332 49780486 2.740000e-40 176
11 TraesCS1D01G113200 chr3D 81.176 170 24 5 1 163 516638258 516638426 2.160000e-26 130
12 TraesCS1D01G113200 chr3D 84.252 127 17 2 4 130 496770220 496770343 1.300000e-23 121
13 TraesCS1D01G113200 chr7D 87.417 151 16 1 13 163 368815501 368815354 1.270000e-38 171
14 TraesCS1D01G113200 chr7D 83.553 152 19 1 18 163 90039309 90039158 1.290000e-28 137
15 TraesCS1D01G113200 chr3B 85.526 152 22 0 1120 1271 79272505 79272656 2.760000e-35 159
16 TraesCS1D01G113200 chr5A 84.615 156 21 1 11 163 521814198 521814353 4.610000e-33 152
17 TraesCS1D01G113200 chr5A 82.313 147 19 2 1 141 622724982 622725127 1.300000e-23 121
18 TraesCS1D01G113200 chrUn 82.692 156 27 0 1 156 474230949 474231104 3.590000e-29 139
19 TraesCS1D01G113200 chr4D 82.550 149 17 7 160 305 7869788 7869646 3.620000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G113200 chr1D 109577276 109579950 2674 True 4940.0 4940 100.000000 1 2675 1 chr1D.!!$R1 2674
1 TraesCS1D01G113200 chr1A 113248154 113252585 4431 True 1341.5 2416 91.496500 547 2675 2 chr1A.!!$R1 2128
2 TraesCS1D01G113200 chr1B 165545969 165548621 2652 True 793.0 1493 88.635667 410 2675 3 chr1B.!!$R1 2265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.035343 ATCTCCTCGTCAGACGACCA 60.035 55.0 21.92 9.94 46.73 4.02 F
320 321 0.035630 GCAGGCACTCTGGACTCAAT 60.036 55.0 0.00 0.00 43.54 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1361 0.678950 GAGCATCCTGGAGTAGAGCC 59.321 60.0 1.52 0.0 0.00 4.70 R
2209 2762 0.743345 GTATTTTGCTCGGCTCCGGT 60.743 55.0 8.59 0.0 40.25 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.289066 TCAGGTCGCGAGGTTGAAG 59.711 57.895 10.24 0.00 0.00 3.02
24 25 2.815647 GCGAGGTTGAAGCGGGAG 60.816 66.667 0.00 0.00 0.00 4.30
41 42 3.414700 GCAAGACAGTGCGGTCCG 61.415 66.667 6.99 6.99 38.59 4.79
42 43 2.029073 CAAGACAGTGCGGTCCGT 59.971 61.111 13.94 0.00 38.59 4.69
43 44 2.022129 CAAGACAGTGCGGTCCGTC 61.022 63.158 13.94 5.94 38.59 4.79
44 45 3.553437 AAGACAGTGCGGTCCGTCG 62.553 63.158 13.94 1.55 38.59 5.12
47 48 4.129737 CAGTGCGGTCCGTCGGAT 62.130 66.667 18.75 0.00 32.73 4.18
48 49 4.129737 AGTGCGGTCCGTCGGATG 62.130 66.667 18.75 14.27 32.73 3.51
49 50 4.124351 GTGCGGTCCGTCGGATGA 62.124 66.667 18.75 0.00 32.73 2.92
50 51 3.375239 TGCGGTCCGTCGGATGAA 61.375 61.111 18.75 5.07 32.73 2.57
51 52 2.582498 GCGGTCCGTCGGATGAAG 60.582 66.667 18.75 10.20 32.73 3.02
52 53 2.104331 CGGTCCGTCGGATGAAGG 59.896 66.667 18.75 1.55 44.24 3.46
53 54 2.499685 GGTCCGTCGGATGAAGGG 59.500 66.667 18.75 0.00 43.21 3.95
54 55 2.499685 GTCCGTCGGATGAAGGGG 59.500 66.667 18.75 0.00 43.21 4.79
55 56 3.467226 TCCGTCGGATGAAGGGGC 61.467 66.667 10.71 0.00 43.21 5.80
56 57 3.470888 CCGTCGGATGAAGGGGCT 61.471 66.667 4.91 0.00 39.77 5.19
57 58 2.107141 CGTCGGATGAAGGGGCTC 59.893 66.667 0.00 0.00 0.00 4.70
58 59 2.721167 CGTCGGATGAAGGGGCTCA 61.721 63.158 0.00 0.00 0.00 4.26
59 60 1.832912 GTCGGATGAAGGGGCTCAT 59.167 57.895 0.00 0.00 38.79 2.90
65 66 1.830486 ATGAAGGGGCTCATCATCCT 58.170 50.000 0.00 0.00 29.80 3.24
66 67 1.135094 TGAAGGGGCTCATCATCCTC 58.865 55.000 0.00 0.00 0.00 3.71
67 68 1.344803 TGAAGGGGCTCATCATCCTCT 60.345 52.381 0.00 0.00 33.79 3.69
68 69 1.347378 GAAGGGGCTCATCATCCTCTC 59.653 57.143 0.00 0.00 30.31 3.20
69 70 0.473501 AGGGGCTCATCATCCTCTCC 60.474 60.000 0.00 0.00 0.00 3.71
70 71 1.670590 GGGCTCATCATCCTCTCCG 59.329 63.158 0.00 0.00 0.00 4.63
71 72 0.829602 GGGCTCATCATCCTCTCCGA 60.830 60.000 0.00 0.00 0.00 4.55
72 73 0.316841 GGCTCATCATCCTCTCCGAC 59.683 60.000 0.00 0.00 0.00 4.79
73 74 1.327303 GCTCATCATCCTCTCCGACT 58.673 55.000 0.00 0.00 0.00 4.18
74 75 1.269448 GCTCATCATCCTCTCCGACTC 59.731 57.143 0.00 0.00 0.00 3.36
75 76 2.862541 CTCATCATCCTCTCCGACTCT 58.137 52.381 0.00 0.00 0.00 3.24
76 77 2.553602 CTCATCATCCTCTCCGACTCTG 59.446 54.545 0.00 0.00 0.00 3.35
77 78 2.173569 TCATCATCCTCTCCGACTCTGA 59.826 50.000 0.00 0.00 0.00 3.27
78 79 2.045561 TCATCCTCTCCGACTCTGAC 57.954 55.000 0.00 0.00 0.00 3.51
79 80 0.660488 CATCCTCTCCGACTCTGACG 59.340 60.000 0.00 0.00 0.00 4.35
80 81 0.542333 ATCCTCTCCGACTCTGACGA 59.458 55.000 0.00 0.00 0.00 4.20
81 82 0.391395 TCCTCTCCGACTCTGACGAC 60.391 60.000 0.00 0.00 0.00 4.34
82 83 1.697772 CCTCTCCGACTCTGACGACG 61.698 65.000 0.00 0.00 0.00 5.12
83 84 1.697772 CTCTCCGACTCTGACGACGG 61.698 65.000 0.00 0.00 45.61 4.79
84 85 3.384014 CTCCGACTCTGACGACGGC 62.384 68.421 0.00 0.00 44.19 5.68
85 86 4.813526 CCGACTCTGACGACGGCG 62.814 72.222 10.39 10.39 44.79 6.46
86 87 3.785499 CGACTCTGACGACGGCGA 61.785 66.667 22.49 0.00 41.64 5.54
87 88 2.202324 GACTCTGACGACGGCGAC 60.202 66.667 22.49 13.68 41.64 5.19
88 89 2.962827 GACTCTGACGACGGCGACA 61.963 63.158 22.49 18.89 41.64 4.35
89 90 2.254350 CTCTGACGACGGCGACAA 59.746 61.111 22.49 7.79 41.22 3.18
90 91 2.050714 TCTGACGACGGCGACAAC 60.051 61.111 22.49 6.29 41.22 3.32
91 92 2.050351 CTGACGACGGCGACAACT 60.050 61.111 22.49 0.00 41.22 3.16
92 93 2.354188 TGACGACGGCGACAACTG 60.354 61.111 22.49 0.00 39.08 3.16
93 94 3.764049 GACGACGGCGACAACTGC 61.764 66.667 22.49 0.00 41.64 4.40
94 95 4.578898 ACGACGGCGACAACTGCA 62.579 61.111 22.49 0.00 41.64 4.41
95 96 3.112075 CGACGGCGACAACTGCAT 61.112 61.111 16.62 0.00 40.82 3.96
96 97 2.778679 GACGGCGACAACTGCATC 59.221 61.111 16.62 0.00 0.00 3.91
97 98 1.738099 GACGGCGACAACTGCATCT 60.738 57.895 16.62 0.00 0.00 2.90
98 99 1.687494 GACGGCGACAACTGCATCTC 61.687 60.000 16.62 0.00 0.00 2.75
99 100 2.456119 CGGCGACAACTGCATCTCC 61.456 63.158 0.00 0.00 0.00 3.71
100 101 1.078848 GGCGACAACTGCATCTCCT 60.079 57.895 0.00 0.00 0.00 3.69
101 102 1.086634 GGCGACAACTGCATCTCCTC 61.087 60.000 0.00 0.00 0.00 3.71
102 103 1.416813 GCGACAACTGCATCTCCTCG 61.417 60.000 0.00 0.00 0.00 4.63
103 104 0.109086 CGACAACTGCATCTCCTCGT 60.109 55.000 0.00 0.00 0.00 4.18
104 105 1.634702 GACAACTGCATCTCCTCGTC 58.365 55.000 0.00 0.00 0.00 4.20
105 106 0.969149 ACAACTGCATCTCCTCGTCA 59.031 50.000 0.00 0.00 0.00 4.35
106 107 1.067283 ACAACTGCATCTCCTCGTCAG 60.067 52.381 0.00 0.00 0.00 3.51
107 108 1.203287 CAACTGCATCTCCTCGTCAGA 59.797 52.381 0.00 0.00 0.00 3.27
108 109 0.814457 ACTGCATCTCCTCGTCAGAC 59.186 55.000 0.00 0.00 0.00 3.51
109 110 0.248417 CTGCATCTCCTCGTCAGACG 60.248 60.000 17.33 17.33 44.19 4.18
111 112 0.248296 GCATCTCCTCGTCAGACGAC 60.248 60.000 21.92 6.64 46.73 4.34
112 113 0.378962 CATCTCCTCGTCAGACGACC 59.621 60.000 21.92 0.00 46.73 4.79
113 114 0.035343 ATCTCCTCGTCAGACGACCA 60.035 55.000 21.92 9.94 46.73 4.02
114 115 0.250597 TCTCCTCGTCAGACGACCAA 60.251 55.000 21.92 8.98 46.73 3.67
115 116 0.169230 CTCCTCGTCAGACGACCAAG 59.831 60.000 21.92 14.35 46.73 3.61
116 117 0.250597 TCCTCGTCAGACGACCAAGA 60.251 55.000 21.92 12.80 46.73 3.02
117 118 0.109689 CCTCGTCAGACGACCAAGAC 60.110 60.000 21.92 0.00 46.73 3.01
118 119 0.109689 CTCGTCAGACGACCAAGACC 60.110 60.000 21.92 0.00 46.73 3.85
119 120 1.080705 CGTCAGACGACCAAGACCC 60.081 63.158 18.63 0.00 46.05 4.46
120 121 1.524863 CGTCAGACGACCAAGACCCT 61.525 60.000 18.63 0.00 46.05 4.34
121 122 0.244178 GTCAGACGACCAAGACCCTC 59.756 60.000 0.00 0.00 36.02 4.30
122 123 0.898789 TCAGACGACCAAGACCCTCC 60.899 60.000 0.00 0.00 0.00 4.30
123 124 1.155390 AGACGACCAAGACCCTCCA 59.845 57.895 0.00 0.00 0.00 3.86
124 125 0.252284 AGACGACCAAGACCCTCCAT 60.252 55.000 0.00 0.00 0.00 3.41
125 126 0.175989 GACGACCAAGACCCTCCATC 59.824 60.000 0.00 0.00 0.00 3.51
126 127 0.544357 ACGACCAAGACCCTCCATCA 60.544 55.000 0.00 0.00 0.00 3.07
127 128 0.176680 CGACCAAGACCCTCCATCAG 59.823 60.000 0.00 0.00 0.00 2.90
128 129 0.107459 GACCAAGACCCTCCATCAGC 60.107 60.000 0.00 0.00 0.00 4.26
129 130 1.225704 CCAAGACCCTCCATCAGCC 59.774 63.158 0.00 0.00 0.00 4.85
130 131 1.277580 CCAAGACCCTCCATCAGCCT 61.278 60.000 0.00 0.00 0.00 4.58
131 132 0.179936 CAAGACCCTCCATCAGCCTC 59.820 60.000 0.00 0.00 0.00 4.70
132 133 1.333636 AAGACCCTCCATCAGCCTCG 61.334 60.000 0.00 0.00 0.00 4.63
133 134 1.758514 GACCCTCCATCAGCCTCGA 60.759 63.158 0.00 0.00 0.00 4.04
134 135 1.306141 ACCCTCCATCAGCCTCGAA 60.306 57.895 0.00 0.00 0.00 3.71
135 136 0.692419 ACCCTCCATCAGCCTCGAAT 60.692 55.000 0.00 0.00 0.00 3.34
136 137 0.250209 CCCTCCATCAGCCTCGAATG 60.250 60.000 0.00 0.00 0.00 2.67
137 138 0.883814 CCTCCATCAGCCTCGAATGC 60.884 60.000 0.00 0.00 0.00 3.56
138 139 0.883814 CTCCATCAGCCTCGAATGCC 60.884 60.000 3.16 0.00 0.00 4.40
139 140 1.147824 CCATCAGCCTCGAATGCCT 59.852 57.895 3.16 0.00 0.00 4.75
140 141 0.394192 CCATCAGCCTCGAATGCCTA 59.606 55.000 3.16 0.00 0.00 3.93
141 142 1.002888 CCATCAGCCTCGAATGCCTAT 59.997 52.381 3.16 0.00 0.00 2.57
142 143 2.234661 CCATCAGCCTCGAATGCCTATA 59.765 50.000 3.16 0.00 0.00 1.31
143 144 3.519579 CATCAGCCTCGAATGCCTATAG 58.480 50.000 3.16 0.00 0.00 1.31
144 145 1.273606 TCAGCCTCGAATGCCTATAGC 59.726 52.381 3.16 0.00 44.14 2.97
145 146 1.274728 CAGCCTCGAATGCCTATAGCT 59.725 52.381 3.16 0.00 44.23 3.32
146 147 1.274728 AGCCTCGAATGCCTATAGCTG 59.725 52.381 0.00 0.00 44.23 4.24
147 148 1.719600 CCTCGAATGCCTATAGCTGC 58.280 55.000 0.00 0.00 44.23 5.25
148 149 1.344458 CTCGAATGCCTATAGCTGCG 58.656 55.000 0.00 0.00 44.23 5.18
149 150 0.667487 TCGAATGCCTATAGCTGCGC 60.667 55.000 0.00 0.00 44.23 6.09
150 151 0.668706 CGAATGCCTATAGCTGCGCT 60.669 55.000 9.73 8.09 44.23 5.92
151 152 0.795085 GAATGCCTATAGCTGCGCTG 59.205 55.000 9.73 10.04 44.23 5.18
152 153 0.394192 AATGCCTATAGCTGCGCTGA 59.606 50.000 19.32 0.00 44.23 4.26
153 154 0.320247 ATGCCTATAGCTGCGCTGAC 60.320 55.000 19.32 9.37 44.23 3.51
154 155 2.018866 GCCTATAGCTGCGCTGACG 61.019 63.158 19.32 0.12 40.10 4.35
155 156 1.654774 CCTATAGCTGCGCTGACGA 59.345 57.895 19.32 6.25 43.93 4.20
156 157 0.242286 CCTATAGCTGCGCTGACGAT 59.758 55.000 19.32 12.69 43.93 3.73
157 158 1.612156 CTATAGCTGCGCTGACGATC 58.388 55.000 19.32 0.00 43.93 3.69
158 159 0.110192 TATAGCTGCGCTGACGATCG 60.110 55.000 19.32 14.88 43.93 3.69
159 160 2.739523 ATAGCTGCGCTGACGATCGG 62.740 60.000 20.98 2.45 43.93 4.18
160 161 4.854784 GCTGCGCTGACGATCGGA 62.855 66.667 20.98 4.39 43.93 4.55
161 162 2.202610 CTGCGCTGACGATCGGAA 60.203 61.111 20.98 5.92 43.93 4.30
162 163 2.202610 TGCGCTGACGATCGGAAG 60.203 61.111 20.98 16.59 43.93 3.46
163 164 2.202623 GCGCTGACGATCGGAAGT 60.203 61.111 20.98 0.00 43.93 3.01
164 165 1.805945 GCGCTGACGATCGGAAGTT 60.806 57.895 20.98 0.00 43.93 2.66
165 166 1.352156 GCGCTGACGATCGGAAGTTT 61.352 55.000 20.98 0.00 43.93 2.66
166 167 0.366871 CGCTGACGATCGGAAGTTTG 59.633 55.000 20.98 6.94 43.93 2.93
167 168 1.429463 GCTGACGATCGGAAGTTTGT 58.571 50.000 20.98 0.00 0.00 2.83
168 169 1.798813 GCTGACGATCGGAAGTTTGTT 59.201 47.619 20.98 0.00 0.00 2.83
169 170 2.991190 GCTGACGATCGGAAGTTTGTTA 59.009 45.455 20.98 0.00 0.00 2.41
170 171 3.430895 GCTGACGATCGGAAGTTTGTTAA 59.569 43.478 20.98 0.00 0.00 2.01
171 172 4.092968 GCTGACGATCGGAAGTTTGTTAAT 59.907 41.667 20.98 0.00 0.00 1.40
172 173 5.290158 GCTGACGATCGGAAGTTTGTTAATA 59.710 40.000 20.98 0.00 0.00 0.98
173 174 6.018994 GCTGACGATCGGAAGTTTGTTAATAT 60.019 38.462 20.98 0.00 0.00 1.28
174 175 7.459394 TGACGATCGGAAGTTTGTTAATATC 57.541 36.000 20.98 2.22 0.00 1.63
175 176 6.477688 TGACGATCGGAAGTTTGTTAATATCC 59.522 38.462 20.98 0.00 0.00 2.59
181 182 5.510323 CGGAAGTTTGTTAATATCCGTTTGC 59.490 40.000 3.97 0.00 43.51 3.68
182 183 6.383415 GGAAGTTTGTTAATATCCGTTTGCA 58.617 36.000 0.00 0.00 0.00 4.08
183 184 6.526674 GGAAGTTTGTTAATATCCGTTTGCAG 59.473 38.462 0.00 0.00 0.00 4.41
184 185 5.399013 AGTTTGTTAATATCCGTTTGCAGC 58.601 37.500 0.00 0.00 0.00 5.25
185 186 4.364415 TTGTTAATATCCGTTTGCAGCC 57.636 40.909 0.00 0.00 0.00 4.85
186 187 2.353269 TGTTAATATCCGTTTGCAGCCG 59.647 45.455 0.00 0.53 0.00 5.52
187 188 2.605837 TAATATCCGTTTGCAGCCGA 57.394 45.000 8.47 0.00 0.00 5.54
188 189 1.967319 AATATCCGTTTGCAGCCGAT 58.033 45.000 8.47 4.56 0.00 4.18
189 190 1.512926 ATATCCGTTTGCAGCCGATC 58.487 50.000 8.47 0.00 0.00 3.69
190 191 0.464036 TATCCGTTTGCAGCCGATCT 59.536 50.000 8.47 0.00 0.00 2.75
191 192 0.392998 ATCCGTTTGCAGCCGATCTT 60.393 50.000 8.47 0.00 0.00 2.40
192 193 1.135315 CCGTTTGCAGCCGATCTTG 59.865 57.895 8.47 0.00 0.00 3.02
193 194 1.577328 CCGTTTGCAGCCGATCTTGT 61.577 55.000 8.47 0.00 0.00 3.16
194 195 0.453282 CGTTTGCAGCCGATCTTGTG 60.453 55.000 1.22 0.00 0.00 3.33
195 196 0.593128 GTTTGCAGCCGATCTTGTGT 59.407 50.000 0.00 0.00 0.00 3.72
196 197 1.001378 GTTTGCAGCCGATCTTGTGTT 60.001 47.619 0.00 0.00 0.00 3.32
197 198 0.874390 TTGCAGCCGATCTTGTGTTC 59.126 50.000 0.00 0.00 0.00 3.18
198 199 0.955428 TGCAGCCGATCTTGTGTTCC 60.955 55.000 0.00 0.00 0.00 3.62
199 200 0.674895 GCAGCCGATCTTGTGTTCCT 60.675 55.000 0.00 0.00 0.00 3.36
200 201 1.405526 GCAGCCGATCTTGTGTTCCTA 60.406 52.381 0.00 0.00 0.00 2.94
201 202 2.935238 GCAGCCGATCTTGTGTTCCTAA 60.935 50.000 0.00 0.00 0.00 2.69
202 203 2.932614 CAGCCGATCTTGTGTTCCTAAG 59.067 50.000 0.00 0.00 0.00 2.18
203 204 1.666189 GCCGATCTTGTGTTCCTAAGC 59.334 52.381 0.00 0.00 0.00 3.09
204 205 2.935238 GCCGATCTTGTGTTCCTAAGCA 60.935 50.000 0.00 0.00 0.00 3.91
205 206 2.932614 CCGATCTTGTGTTCCTAAGCAG 59.067 50.000 0.00 0.00 0.00 4.24
206 207 2.349886 CGATCTTGTGTTCCTAAGCAGC 59.650 50.000 0.00 0.00 0.00 5.25
207 208 1.795768 TCTTGTGTTCCTAAGCAGCG 58.204 50.000 0.00 0.00 0.00 5.18
208 209 1.343142 TCTTGTGTTCCTAAGCAGCGA 59.657 47.619 0.00 0.00 0.00 4.93
209 210 2.028112 TCTTGTGTTCCTAAGCAGCGAT 60.028 45.455 0.00 0.00 0.00 4.58
210 211 2.472695 TGTGTTCCTAAGCAGCGATT 57.527 45.000 0.00 0.00 0.00 3.34
211 212 2.778299 TGTGTTCCTAAGCAGCGATTT 58.222 42.857 0.00 0.00 0.00 2.17
212 213 3.146066 TGTGTTCCTAAGCAGCGATTTT 58.854 40.909 0.00 0.00 0.00 1.82
213 214 3.568007 TGTGTTCCTAAGCAGCGATTTTT 59.432 39.130 0.00 0.00 0.00 1.94
214 215 4.757657 TGTGTTCCTAAGCAGCGATTTTTA 59.242 37.500 0.00 0.00 0.00 1.52
215 216 5.414454 TGTGTTCCTAAGCAGCGATTTTTAT 59.586 36.000 0.00 0.00 0.00 1.40
216 217 6.072175 TGTGTTCCTAAGCAGCGATTTTTATT 60.072 34.615 0.00 0.00 0.00 1.40
217 218 6.251376 GTGTTCCTAAGCAGCGATTTTTATTG 59.749 38.462 0.00 0.00 0.00 1.90
218 219 6.072175 TGTTCCTAAGCAGCGATTTTTATTGT 60.072 34.615 0.00 0.00 0.00 2.71
219 220 6.509418 TCCTAAGCAGCGATTTTTATTGTT 57.491 33.333 0.00 0.00 0.00 2.83
220 221 6.551736 TCCTAAGCAGCGATTTTTATTGTTC 58.448 36.000 0.00 0.00 0.00 3.18
221 222 5.452302 CCTAAGCAGCGATTTTTATTGTTCG 59.548 40.000 0.00 0.00 34.83 3.95
222 223 4.419522 AGCAGCGATTTTTATTGTTCGT 57.580 36.364 0.00 0.00 34.24 3.85
223 224 4.403453 AGCAGCGATTTTTATTGTTCGTC 58.597 39.130 0.00 0.00 34.24 4.20
224 225 3.235179 GCAGCGATTTTTATTGTTCGTCG 59.765 43.478 0.00 0.00 34.24 5.12
225 226 4.391358 CAGCGATTTTTATTGTTCGTCGT 58.609 39.130 0.00 0.00 34.24 4.34
226 227 4.843984 CAGCGATTTTTATTGTTCGTCGTT 59.156 37.500 0.00 0.00 34.24 3.85
227 228 5.338559 CAGCGATTTTTATTGTTCGTCGTTT 59.661 36.000 0.00 0.00 34.24 3.60
228 229 5.338559 AGCGATTTTTATTGTTCGTCGTTTG 59.661 36.000 0.00 0.00 34.24 2.93
229 230 5.337512 GCGATTTTTATTGTTCGTCGTTTGA 59.662 36.000 0.00 0.00 34.24 2.69
230 231 6.032042 GCGATTTTTATTGTTCGTCGTTTGAT 59.968 34.615 0.00 0.00 34.24 2.57
231 232 7.580309 CGATTTTTATTGTTCGTCGTTTGATC 58.420 34.615 0.00 0.00 0.00 2.92
232 233 7.267388 CGATTTTTATTGTTCGTCGTTTGATCA 59.733 33.333 0.00 0.00 0.00 2.92
233 234 7.597643 TTTTTATTGTTCGTCGTTTGATCAC 57.402 32.000 0.00 0.00 0.00 3.06
234 235 5.908916 TTATTGTTCGTCGTTTGATCACA 57.091 34.783 0.00 0.00 0.00 3.58
235 236 6.474819 TTATTGTTCGTCGTTTGATCACAT 57.525 33.333 0.00 0.00 0.00 3.21
236 237 7.583860 TTATTGTTCGTCGTTTGATCACATA 57.416 32.000 0.00 0.00 0.00 2.29
237 238 5.509605 TTGTTCGTCGTTTGATCACATAG 57.490 39.130 0.00 0.00 0.00 2.23
238 239 3.924073 TGTTCGTCGTTTGATCACATAGG 59.076 43.478 0.00 0.00 0.00 2.57
239 240 3.861276 TCGTCGTTTGATCACATAGGT 57.139 42.857 0.00 0.00 0.00 3.08
240 241 4.182693 TCGTCGTTTGATCACATAGGTT 57.817 40.909 0.00 0.00 0.00 3.50
241 242 5.313520 TCGTCGTTTGATCACATAGGTTA 57.686 39.130 0.00 0.00 0.00 2.85
242 243 5.337554 TCGTCGTTTGATCACATAGGTTAG 58.662 41.667 0.00 0.00 0.00 2.34
243 244 5.124297 TCGTCGTTTGATCACATAGGTTAGA 59.876 40.000 0.00 0.00 0.00 2.10
244 245 5.977725 CGTCGTTTGATCACATAGGTTAGAT 59.022 40.000 0.00 0.00 0.00 1.98
245 246 6.142480 CGTCGTTTGATCACATAGGTTAGATC 59.858 42.308 0.00 1.93 37.86 2.75
246 247 6.978659 GTCGTTTGATCACATAGGTTAGATCA 59.021 38.462 6.48 6.48 43.53 2.92
252 253 9.685276 TTGATCACATAGGTTAGATCAATGTTT 57.315 29.630 15.36 0.00 46.62 2.83
253 254 9.112725 TGATCACATAGGTTAGATCAATGTTTG 57.887 33.333 7.78 0.00 42.61 2.93
254 255 7.320443 TCACATAGGTTAGATCAATGTTTGC 57.680 36.000 0.00 0.00 0.00 3.68
255 256 6.883756 TCACATAGGTTAGATCAATGTTTGCA 59.116 34.615 0.00 0.00 0.00 4.08
256 257 7.557358 TCACATAGGTTAGATCAATGTTTGCAT 59.443 33.333 0.00 0.00 36.80 3.96
257 258 7.646526 CACATAGGTTAGATCAATGTTTGCATG 59.353 37.037 0.00 0.00 35.15 4.06
258 259 7.340232 ACATAGGTTAGATCAATGTTTGCATGT 59.660 33.333 0.00 0.00 35.15 3.21
259 260 5.957798 AGGTTAGATCAATGTTTGCATGTG 58.042 37.500 0.00 0.00 35.15 3.21
260 261 5.477984 AGGTTAGATCAATGTTTGCATGTGT 59.522 36.000 0.00 0.00 35.15 3.72
261 262 6.658816 AGGTTAGATCAATGTTTGCATGTGTA 59.341 34.615 0.00 0.00 35.15 2.90
262 263 6.968904 GGTTAGATCAATGTTTGCATGTGTAG 59.031 38.462 0.00 0.00 35.15 2.74
263 264 7.362056 GGTTAGATCAATGTTTGCATGTGTAGT 60.362 37.037 0.00 0.00 35.15 2.73
264 265 8.664798 GTTAGATCAATGTTTGCATGTGTAGTA 58.335 33.333 0.00 0.00 35.15 1.82
265 266 7.870509 AGATCAATGTTTGCATGTGTAGTAT 57.129 32.000 0.00 0.00 35.15 2.12
266 267 8.962884 AGATCAATGTTTGCATGTGTAGTATA 57.037 30.769 0.00 0.00 35.15 1.47
267 268 9.049523 AGATCAATGTTTGCATGTGTAGTATAG 57.950 33.333 0.00 0.00 35.15 1.31
268 269 8.962884 ATCAATGTTTGCATGTGTAGTATAGA 57.037 30.769 0.00 0.00 35.15 1.98
269 270 8.962884 TCAATGTTTGCATGTGTAGTATAGAT 57.037 30.769 0.00 0.00 35.15 1.98
275 276 9.587772 GTTTGCATGTGTAGTATAGATATAGGG 57.412 37.037 0.00 0.00 0.00 3.53
276 277 8.895141 TTGCATGTGTAGTATAGATATAGGGT 57.105 34.615 0.00 0.00 0.00 4.34
277 278 8.293699 TGCATGTGTAGTATAGATATAGGGTG 57.706 38.462 0.00 0.00 0.00 4.61
278 279 7.342026 TGCATGTGTAGTATAGATATAGGGTGG 59.658 40.741 0.00 0.00 0.00 4.61
279 280 7.684670 GCATGTGTAGTATAGATATAGGGTGGC 60.685 44.444 0.00 0.00 0.00 5.01
280 281 5.884232 TGTGTAGTATAGATATAGGGTGGCG 59.116 44.000 0.00 0.00 0.00 5.69
281 282 5.298777 GTGTAGTATAGATATAGGGTGGCGG 59.701 48.000 0.00 0.00 0.00 6.13
282 283 3.912248 AGTATAGATATAGGGTGGCGGG 58.088 50.000 0.00 0.00 0.00 6.13
283 284 2.942604 ATAGATATAGGGTGGCGGGT 57.057 50.000 0.00 0.00 0.00 5.28
284 285 4.479796 AGTATAGATATAGGGTGGCGGGTA 59.520 45.833 0.00 0.00 0.00 3.69
285 286 1.934410 AGATATAGGGTGGCGGGTAC 58.066 55.000 0.00 0.00 0.00 3.34
286 287 0.529378 GATATAGGGTGGCGGGTACG 59.471 60.000 0.00 0.00 44.63 3.67
287 288 0.112995 ATATAGGGTGGCGGGTACGA 59.887 55.000 0.00 0.00 44.60 3.43
288 289 0.538057 TATAGGGTGGCGGGTACGAG 60.538 60.000 0.00 0.00 44.60 4.18
289 290 2.288642 ATAGGGTGGCGGGTACGAGA 62.289 60.000 0.00 0.00 44.60 4.04
290 291 2.288642 TAGGGTGGCGGGTACGAGAT 62.289 60.000 0.00 0.00 44.60 2.75
291 292 1.829533 GGGTGGCGGGTACGAGATA 60.830 63.158 0.00 0.00 44.60 1.98
292 293 1.361632 GGTGGCGGGTACGAGATAC 59.638 63.158 0.00 0.00 44.60 2.24
293 294 1.009222 GTGGCGGGTACGAGATACG 60.009 63.158 0.00 0.00 44.60 3.06
294 295 1.153188 TGGCGGGTACGAGATACGA 60.153 57.895 0.00 0.00 45.77 3.43
295 296 1.162181 TGGCGGGTACGAGATACGAG 61.162 60.000 0.00 0.00 45.77 4.18
296 297 1.082235 GCGGGTACGAGATACGAGC 60.082 63.158 0.00 0.00 45.77 5.03
297 298 1.203563 CGGGTACGAGATACGAGCG 59.796 63.158 0.00 0.00 45.77 5.03
298 299 1.573436 GGGTACGAGATACGAGCGG 59.427 63.158 0.00 0.00 45.77 5.52
299 300 0.882042 GGGTACGAGATACGAGCGGA 60.882 60.000 0.00 0.00 45.77 5.54
300 301 1.155042 GGTACGAGATACGAGCGGAT 58.845 55.000 0.00 0.00 45.77 4.18
301 302 1.136029 GGTACGAGATACGAGCGGATG 60.136 57.143 0.00 0.00 45.77 3.51
302 303 0.516001 TACGAGATACGAGCGGATGC 59.484 55.000 0.00 0.00 45.77 3.91
303 304 1.282875 CGAGATACGAGCGGATGCA 59.717 57.895 0.00 0.00 46.23 3.96
304 305 0.727457 CGAGATACGAGCGGATGCAG 60.727 60.000 0.00 0.00 46.23 4.41
305 306 0.387878 GAGATACGAGCGGATGCAGG 60.388 60.000 0.00 0.00 46.23 4.85
306 307 2.024319 GATACGAGCGGATGCAGGC 61.024 63.158 0.00 0.00 46.23 4.85
307 308 2.699576 GATACGAGCGGATGCAGGCA 62.700 60.000 9.47 0.00 46.23 4.75
308 309 2.978452 ATACGAGCGGATGCAGGCAC 62.978 60.000 9.47 2.88 46.23 5.01
309 310 4.827087 CGAGCGGATGCAGGCACT 62.827 66.667 9.47 0.00 46.23 4.40
310 311 2.894387 GAGCGGATGCAGGCACTC 60.894 66.667 9.47 2.46 46.23 3.51
311 312 3.382803 GAGCGGATGCAGGCACTCT 62.383 63.158 9.47 0.00 46.23 3.24
312 313 3.200593 GCGGATGCAGGCACTCTG 61.201 66.667 0.00 2.52 46.03 3.35
313 314 2.513204 CGGATGCAGGCACTCTGG 60.513 66.667 0.00 0.00 43.54 3.86
315 316 1.451028 GGATGCAGGCACTCTGGAC 60.451 63.158 0.00 0.00 46.51 4.02
316 317 1.601171 GATGCAGGCACTCTGGACT 59.399 57.895 0.00 0.00 46.51 3.85
317 318 0.461693 GATGCAGGCACTCTGGACTC 60.462 60.000 0.00 0.00 46.51 3.36
318 319 1.196766 ATGCAGGCACTCTGGACTCA 61.197 55.000 0.00 0.00 46.51 3.41
319 320 1.372683 GCAGGCACTCTGGACTCAA 59.627 57.895 0.00 0.00 43.54 3.02
320 321 0.035630 GCAGGCACTCTGGACTCAAT 60.036 55.000 0.00 0.00 43.54 2.57
321 322 1.612726 GCAGGCACTCTGGACTCAATT 60.613 52.381 0.00 0.00 43.54 2.32
322 323 2.354259 CAGGCACTCTGGACTCAATTC 58.646 52.381 0.00 0.00 39.76 2.17
323 324 2.027377 CAGGCACTCTGGACTCAATTCT 60.027 50.000 0.00 0.00 39.76 2.40
324 325 2.641815 AGGCACTCTGGACTCAATTCTT 59.358 45.455 0.00 0.00 0.00 2.52
325 326 3.006247 GGCACTCTGGACTCAATTCTTC 58.994 50.000 0.00 0.00 0.00 2.87
326 327 3.006247 GCACTCTGGACTCAATTCTTCC 58.994 50.000 0.00 0.00 0.00 3.46
327 328 3.604582 CACTCTGGACTCAATTCTTCCC 58.395 50.000 0.00 0.00 0.00 3.97
328 329 3.008375 CACTCTGGACTCAATTCTTCCCA 59.992 47.826 0.00 0.00 0.00 4.37
329 330 3.848975 ACTCTGGACTCAATTCTTCCCAT 59.151 43.478 0.00 0.00 0.00 4.00
330 331 4.080638 ACTCTGGACTCAATTCTTCCCATC 60.081 45.833 0.00 0.00 0.00 3.51
331 332 3.845992 TCTGGACTCAATTCTTCCCATCA 59.154 43.478 0.00 0.00 0.00 3.07
332 333 4.289410 TCTGGACTCAATTCTTCCCATCAA 59.711 41.667 0.00 0.00 0.00 2.57
333 334 4.335416 TGGACTCAATTCTTCCCATCAAC 58.665 43.478 0.00 0.00 0.00 3.18
334 335 3.696548 GGACTCAATTCTTCCCATCAACC 59.303 47.826 0.00 0.00 0.00 3.77
335 336 4.335416 GACTCAATTCTTCCCATCAACCA 58.665 43.478 0.00 0.00 0.00 3.67
336 337 4.939255 ACTCAATTCTTCCCATCAACCAT 58.061 39.130 0.00 0.00 0.00 3.55
337 338 5.336102 ACTCAATTCTTCCCATCAACCATT 58.664 37.500 0.00 0.00 0.00 3.16
338 339 5.420104 ACTCAATTCTTCCCATCAACCATTC 59.580 40.000 0.00 0.00 0.00 2.67
339 340 5.582953 TCAATTCTTCCCATCAACCATTCT 58.417 37.500 0.00 0.00 0.00 2.40
340 341 6.730447 TCAATTCTTCCCATCAACCATTCTA 58.270 36.000 0.00 0.00 0.00 2.10
341 342 6.830324 TCAATTCTTCCCATCAACCATTCTAG 59.170 38.462 0.00 0.00 0.00 2.43
342 343 5.779241 TTCTTCCCATCAACCATTCTAGT 57.221 39.130 0.00 0.00 0.00 2.57
343 344 5.779241 TCTTCCCATCAACCATTCTAGTT 57.221 39.130 0.00 0.00 0.00 2.24
344 345 5.745227 TCTTCCCATCAACCATTCTAGTTC 58.255 41.667 0.00 0.00 0.00 3.01
345 346 5.488919 TCTTCCCATCAACCATTCTAGTTCT 59.511 40.000 0.00 0.00 0.00 3.01
346 347 6.672218 TCTTCCCATCAACCATTCTAGTTCTA 59.328 38.462 0.00 0.00 0.00 2.10
347 348 6.485830 TCCCATCAACCATTCTAGTTCTAG 57.514 41.667 0.83 0.83 0.00 2.43
348 349 5.366768 TCCCATCAACCATTCTAGTTCTAGG 59.633 44.000 6.96 0.00 0.00 3.02
349 350 5.131142 CCCATCAACCATTCTAGTTCTAGGT 59.869 44.000 6.96 0.00 0.00 3.08
350 351 6.051717 CCATCAACCATTCTAGTTCTAGGTG 58.948 44.000 6.96 6.60 0.00 4.00
351 352 5.677319 TCAACCATTCTAGTTCTAGGTGG 57.323 43.478 20.00 20.00 32.94 4.61
352 353 5.338632 TCAACCATTCTAGTTCTAGGTGGA 58.661 41.667 24.44 11.42 31.91 4.02
353 354 5.783360 TCAACCATTCTAGTTCTAGGTGGAA 59.217 40.000 24.44 14.15 31.91 3.53
354 355 5.941555 ACCATTCTAGTTCTAGGTGGAAG 57.058 43.478 24.44 10.09 31.91 3.46
355 356 5.590818 ACCATTCTAGTTCTAGGTGGAAGA 58.409 41.667 24.44 2.25 31.91 2.87
356 357 5.659079 ACCATTCTAGTTCTAGGTGGAAGAG 59.341 44.000 24.44 9.65 31.91 2.85
357 358 5.452636 CCATTCTAGTTCTAGGTGGAAGAGC 60.453 48.000 18.34 0.00 0.00 4.09
358 359 4.317530 TCTAGTTCTAGGTGGAAGAGCA 57.682 45.455 6.96 0.00 0.00 4.26
359 360 4.873010 TCTAGTTCTAGGTGGAAGAGCAT 58.127 43.478 6.96 0.00 0.00 3.79
360 361 3.902881 AGTTCTAGGTGGAAGAGCATG 57.097 47.619 0.00 0.00 0.00 4.06
361 362 3.177228 AGTTCTAGGTGGAAGAGCATGT 58.823 45.455 0.00 0.00 0.00 3.21
362 363 4.353777 AGTTCTAGGTGGAAGAGCATGTA 58.646 43.478 0.00 0.00 0.00 2.29
363 364 4.160626 AGTTCTAGGTGGAAGAGCATGTAC 59.839 45.833 0.00 0.00 0.00 2.90
364 365 3.708451 TCTAGGTGGAAGAGCATGTACA 58.292 45.455 0.00 0.00 0.00 2.90
365 366 3.701542 TCTAGGTGGAAGAGCATGTACAG 59.298 47.826 0.33 0.00 0.00 2.74
366 367 1.065854 AGGTGGAAGAGCATGTACAGC 60.066 52.381 0.33 5.47 0.00 4.40
367 368 1.373570 GTGGAAGAGCATGTACAGCC 58.626 55.000 0.33 0.00 0.00 4.85
368 369 0.983467 TGGAAGAGCATGTACAGCCA 59.017 50.000 0.33 0.00 0.00 4.75
369 370 1.339055 TGGAAGAGCATGTACAGCCAC 60.339 52.381 0.33 3.44 0.00 5.01
370 371 1.002366 GAAGAGCATGTACAGCCACG 58.998 55.000 0.33 0.00 0.00 4.94
371 372 0.608130 AAGAGCATGTACAGCCACGA 59.392 50.000 0.33 0.00 0.00 4.35
372 373 0.826715 AGAGCATGTACAGCCACGAT 59.173 50.000 0.33 0.00 0.00 3.73
373 374 0.933097 GAGCATGTACAGCCACGATG 59.067 55.000 0.33 0.00 0.00 3.84
374 375 0.462581 AGCATGTACAGCCACGATGG 60.463 55.000 0.33 0.00 41.55 3.51
383 384 3.110139 CCACGATGGCCAAATCCG 58.890 61.111 10.96 13.98 0.00 4.18
384 385 2.408835 CACGATGGCCAAATCCGC 59.591 61.111 10.96 0.00 0.00 5.54
386 387 3.595758 CGATGGCCAAATCCGCCC 61.596 66.667 10.96 0.00 46.48 6.13
387 388 3.226537 GATGGCCAAATCCGCCCC 61.227 66.667 10.96 0.00 46.48 5.80
401 402 3.151710 CCCCGGGCACGTCTCATA 61.152 66.667 17.73 0.00 38.78 2.15
402 403 2.507854 CCCCGGGCACGTCTCATAT 61.508 63.158 17.73 0.00 38.78 1.78
403 404 1.445942 CCCGGGCACGTCTCATATT 59.554 57.895 8.08 0.00 38.78 1.28
404 405 0.179056 CCCGGGCACGTCTCATATTT 60.179 55.000 8.08 0.00 38.78 1.40
405 406 0.937304 CCGGGCACGTCTCATATTTG 59.063 55.000 7.97 0.00 38.78 2.32
406 407 0.937304 CGGGCACGTCTCATATTTGG 59.063 55.000 0.00 0.00 34.81 3.28
407 408 1.308998 GGGCACGTCTCATATTTGGG 58.691 55.000 0.00 0.00 0.00 4.12
408 409 1.408266 GGGCACGTCTCATATTTGGGT 60.408 52.381 0.00 0.00 0.00 4.51
415 416 0.381801 CTCATATTTGGGTGCACCGC 59.618 55.000 29.08 21.49 44.64 5.68
437 438 4.833380 GCATATTCTCCCTAGTGTGGTAGA 59.167 45.833 0.00 0.00 0.00 2.59
451 452 3.594232 TGTGGTAGATTAATTGGTGGGGT 59.406 43.478 0.00 0.00 0.00 4.95
476 482 0.656205 CAGTGAACCGCGGTTTTTCG 60.656 55.000 41.25 26.45 38.60 3.46
486 492 2.800694 CGGTTTTTCGCTAGCTTACC 57.199 50.000 13.93 11.05 0.00 2.85
518 525 6.195244 GGTCGAAAATGAAAATGATCATCGTG 59.805 38.462 9.06 0.00 39.08 4.35
534 541 8.588472 TGATCATCGTGACATCCTAATCTAAAT 58.412 33.333 0.00 0.00 0.00 1.40
569 577 9.686683 ATTTTGACAATAATAGGTAGAGCAACT 57.313 29.630 0.00 0.00 0.00 3.16
570 578 8.492673 TTTGACAATAATAGGTAGAGCAACTG 57.507 34.615 0.00 0.00 0.00 3.16
611 623 6.295011 GCAGCTGGTGACATAATATCTAGTCT 60.295 42.308 17.12 0.00 41.51 3.24
612 624 7.089538 CAGCTGGTGACATAATATCTAGTCTG 58.910 42.308 5.57 0.00 41.51 3.51
614 626 7.176515 AGCTGGTGACATAATATCTAGTCTGAG 59.823 40.741 0.00 0.00 41.51 3.35
615 627 7.040062 GCTGGTGACATAATATCTAGTCTGAGT 60.040 40.741 0.00 0.00 41.51 3.41
617 629 9.201989 TGGTGACATAATATCTAGTCTGAGTTT 57.798 33.333 0.00 0.00 33.40 2.66
621 633 9.828852 GACATAATATCTAGTCTGAGTTTACCG 57.171 37.037 0.00 0.00 0.00 4.02
622 634 9.570468 ACATAATATCTAGTCTGAGTTTACCGA 57.430 33.333 0.00 0.00 0.00 4.69
655 675 3.381590 TCTCTCTGATATGAACCACGGTG 59.618 47.826 0.00 0.00 0.00 4.94
666 692 2.032634 CCACGGTGGACACGAATGG 61.033 63.158 22.77 0.78 40.96 3.16
667 693 2.358247 ACGGTGGACACGAATGGC 60.358 61.111 0.00 0.00 34.93 4.40
669 695 3.799755 GGTGGACACGAATGGCGC 61.800 66.667 0.00 0.00 46.04 6.53
670 696 2.742372 GTGGACACGAATGGCGCT 60.742 61.111 7.64 0.00 46.04 5.92
671 697 2.434185 TGGACACGAATGGCGCTC 60.434 61.111 7.64 0.00 46.04 5.03
865 898 2.038033 TCCTTCCTTCCCTTTACACACG 59.962 50.000 0.00 0.00 0.00 4.49
869 902 1.439679 CTTCCCTTTACACACGCCTC 58.560 55.000 0.00 0.00 0.00 4.70
870 903 1.002087 CTTCCCTTTACACACGCCTCT 59.998 52.381 0.00 0.00 0.00 3.69
871 904 0.606604 TCCCTTTACACACGCCTCTC 59.393 55.000 0.00 0.00 0.00 3.20
872 905 0.608640 CCCTTTACACACGCCTCTCT 59.391 55.000 0.00 0.00 0.00 3.10
873 906 1.404315 CCCTTTACACACGCCTCTCTC 60.404 57.143 0.00 0.00 0.00 3.20
909 1169 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
950 1229 1.403323 GTGGTACGTACTCCAGTAGCC 59.597 57.143 24.07 5.94 39.70 3.93
951 1230 1.004628 TGGTACGTACTCCAGTAGCCA 59.995 52.381 24.07 8.54 39.70 4.75
952 1231 2.094675 GGTACGTACTCCAGTAGCCAA 58.905 52.381 24.07 0.00 35.88 4.52
953 1232 2.098770 GGTACGTACTCCAGTAGCCAAG 59.901 54.545 24.07 0.00 35.88 3.61
954 1233 2.211250 ACGTACTCCAGTAGCCAAGA 57.789 50.000 0.00 0.00 0.00 3.02
955 1234 2.522185 ACGTACTCCAGTAGCCAAGAA 58.478 47.619 0.00 0.00 0.00 2.52
956 1235 2.492484 ACGTACTCCAGTAGCCAAGAAG 59.508 50.000 0.00 0.00 0.00 2.85
957 1236 2.735762 CGTACTCCAGTAGCCAAGAAGC 60.736 54.545 0.00 0.00 0.00 3.86
958 1237 0.247736 ACTCCAGTAGCCAAGAAGCG 59.752 55.000 0.00 0.00 38.01 4.68
959 1238 0.460987 CTCCAGTAGCCAAGAAGCGG 60.461 60.000 0.00 0.00 38.01 5.52
1048 1327 2.395690 CGGACAAGCGCGTGAATC 59.604 61.111 29.85 16.96 0.00 2.52
1049 1328 2.379634 CGGACAAGCGCGTGAATCA 61.380 57.895 29.85 0.00 0.00 2.57
1050 1329 1.421485 GGACAAGCGCGTGAATCAG 59.579 57.895 29.85 2.11 0.00 2.90
1051 1330 1.225854 GACAAGCGCGTGAATCAGC 60.226 57.895 29.85 7.66 0.00 4.26
1052 1331 1.900585 GACAAGCGCGTGAATCAGCA 61.901 55.000 29.85 0.00 0.00 4.41
1053 1332 1.225936 CAAGCGCGTGAATCAGCAG 60.226 57.895 19.03 0.00 0.00 4.24
1054 1333 3.031964 AAGCGCGTGAATCAGCAGC 62.032 57.895 8.43 8.50 34.76 5.25
1055 1334 3.792047 GCGCGTGAATCAGCAGCA 61.792 61.111 8.43 0.00 34.72 4.41
1056 1335 2.398429 CGCGTGAATCAGCAGCAG 59.602 61.111 0.00 0.00 0.00 4.24
1057 1336 2.099831 GCGTGAATCAGCAGCAGC 59.900 61.111 0.00 0.00 42.56 5.25
1058 1337 2.683859 GCGTGAATCAGCAGCAGCA 61.684 57.895 3.17 0.00 45.49 4.41
1059 1338 1.424240 CGTGAATCAGCAGCAGCAG 59.576 57.895 3.17 0.00 45.49 4.24
1060 1339 1.136984 GTGAATCAGCAGCAGCAGC 59.863 57.895 3.17 0.46 45.49 5.25
1082 1361 4.767255 GCAGACGGGGAGCACCAG 62.767 72.222 1.58 0.00 42.91 4.00
1394 1673 0.856982 TCCTCCTCCTCCATCTCCTC 59.143 60.000 0.00 0.00 0.00 3.71
1572 1863 1.538876 CAGGAGGGTGGTGAAGGGA 60.539 63.158 0.00 0.00 0.00 4.20
1666 1958 1.169661 CGCGATGGCTAGAGAGGAGT 61.170 60.000 0.00 0.00 36.88 3.85
1697 1996 2.838736 ACAGAAAGTAGCAGTGTGTGG 58.161 47.619 0.00 0.00 0.00 4.17
1702 2001 0.957395 AGTAGCAGTGTGTGGCATGC 60.957 55.000 9.90 9.90 38.97 4.06
1845 2146 6.046593 ACGAGTAATATTATGTGGTGGTGTG 58.953 40.000 0.00 0.00 0.00 3.82
2020 2493 2.955660 TCATTCCCTGCGAGTTGTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
2021 2494 2.861462 TTCCCTGCGAGTTGTTTTTG 57.139 45.000 0.00 0.00 0.00 2.44
2097 2650 9.439500 TTCGATCTATTCATAATCAATCATGCA 57.561 29.630 0.00 0.00 0.00 3.96
2098 2651 9.609346 TCGATCTATTCATAATCAATCATGCAT 57.391 29.630 0.00 0.00 0.00 3.96
2099 2652 9.651718 CGATCTATTCATAATCAATCATGCATG 57.348 33.333 21.07 21.07 0.00 4.06
2100 2653 9.952188 GATCTATTCATAATCAATCATGCATGG 57.048 33.333 25.97 10.79 0.00 3.66
2109 2662 3.955551 TCAATCATGCATGGCAGTACAAT 59.044 39.130 25.97 7.12 43.65 2.71
2110 2663 4.048504 CAATCATGCATGGCAGTACAATG 58.951 43.478 25.97 5.01 43.65 2.82
2117 2670 1.518325 TGGCAGTACAATGAACACCG 58.482 50.000 0.00 0.00 0.00 4.94
2118 2671 1.070914 TGGCAGTACAATGAACACCGA 59.929 47.619 0.00 0.00 0.00 4.69
2119 2672 2.147958 GGCAGTACAATGAACACCGAA 58.852 47.619 0.00 0.00 0.00 4.30
2166 2719 3.181499 CCACCTAGCGACACTACTACAAG 60.181 52.174 0.00 0.00 0.00 3.16
2183 2736 6.037098 ACTACAAGCAGAGTGAATCGAATAC 58.963 40.000 0.00 0.00 0.00 1.89
2184 2737 3.859961 ACAAGCAGAGTGAATCGAATACG 59.140 43.478 0.00 0.00 41.26 3.06
2190 2743 1.135199 AGTGAATCGAATACGCACCGT 60.135 47.619 0.00 0.00 44.35 4.83
2194 2747 1.274596 ATCGAATACGCACCGTTGAC 58.725 50.000 0.00 0.00 41.54 3.18
2202 2755 2.332654 GCACCGTTGACATCACCCC 61.333 63.158 0.00 0.00 0.00 4.95
2209 2762 1.913419 GTTGACATCACCCCTCCCTTA 59.087 52.381 0.00 0.00 0.00 2.69
2212 2765 0.981277 ACATCACCCCTCCCTTACCG 60.981 60.000 0.00 0.00 0.00 4.02
2219 2772 2.441532 CTCCCTTACCGGAGCCGA 60.442 66.667 9.46 0.00 43.01 5.54
2220 2773 2.441532 TCCCTTACCGGAGCCGAG 60.442 66.667 9.46 3.23 42.83 4.63
2224 2777 1.079405 CTTACCGGAGCCGAGCAAA 60.079 57.895 9.46 0.00 42.83 3.68
2351 2998 9.935682 TTAGATTAATTCTGATTGCGAAATGAC 57.064 29.630 0.00 0.00 35.79 3.06
2370 3017 6.576662 ATGACGACTTCTAGAGAAAACTGA 57.423 37.500 0.00 0.00 33.07 3.41
2404 3051 5.005779 TCGAAGTACGACGAATACTTACCTC 59.994 44.000 13.18 0.00 46.45 3.85
2436 3090 4.611943 CACACTATAGATCGTTCTGTGGG 58.388 47.826 6.78 8.23 31.13 4.61
2458 3112 2.161486 GGACAGACGCGTCATCAGC 61.161 63.158 37.85 21.92 37.66 4.26
2467 3125 2.236690 CGCGTCATCAGCAAGAAAAAG 58.763 47.619 0.00 0.00 34.19 2.27
2470 3128 4.044426 GCGTCATCAGCAAGAAAAAGTTT 58.956 39.130 0.00 0.00 34.19 2.66
2471 3129 4.147133 GCGTCATCAGCAAGAAAAAGTTTC 59.853 41.667 0.00 0.00 34.19 2.78
2472 3130 5.273170 CGTCATCAGCAAGAAAAAGTTTCA 58.727 37.500 3.74 0.00 0.00 2.69
2473 3131 5.916883 CGTCATCAGCAAGAAAAAGTTTCAT 59.083 36.000 3.74 0.00 0.00 2.57
2474 3132 7.077605 CGTCATCAGCAAGAAAAAGTTTCATA 58.922 34.615 3.74 0.00 0.00 2.15
2475 3133 7.269937 CGTCATCAGCAAGAAAAAGTTTCATAG 59.730 37.037 3.74 0.00 0.00 2.23
2476 3134 8.078596 GTCATCAGCAAGAAAAAGTTTCATAGT 58.921 33.333 3.74 0.00 0.00 2.12
2477 3135 9.283768 TCATCAGCAAGAAAAAGTTTCATAGTA 57.716 29.630 3.74 0.00 0.00 1.82
2478 3136 9.334693 CATCAGCAAGAAAAAGTTTCATAGTAC 57.665 33.333 3.74 0.00 0.00 2.73
2479 3137 8.677148 TCAGCAAGAAAAAGTTTCATAGTACT 57.323 30.769 0.00 0.00 0.00 2.73
2480 3138 9.772973 TCAGCAAGAAAAAGTTTCATAGTACTA 57.227 29.630 4.77 4.77 0.00 1.82
2482 3140 9.220767 AGCAAGAAAAAGTTTCATAGTACTAGG 57.779 33.333 8.27 8.27 0.00 3.02
2520 5471 2.787994 AGAACTTCGAAGTAGGACGGA 58.212 47.619 29.91 0.00 38.57 4.69
2543 5494 7.325338 CGGATTCTTAAAATGAAGCATGCATAG 59.675 37.037 21.98 0.00 27.94 2.23
2591 5542 2.319472 GCGTCATCAGCAAGAAAAACC 58.681 47.619 0.00 0.00 34.19 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.383527 GCTTCAACCTCGCGACCTG 61.384 63.158 3.71 2.48 0.00 4.00
2 3 2.048127 GCTTCAACCTCGCGACCT 60.048 61.111 3.71 0.00 0.00 3.85
6 7 4.735132 TCCCGCTTCAACCTCGCG 62.735 66.667 0.00 0.00 45.86 5.87
7 8 2.815647 CTCCCGCTTCAACCTCGC 60.816 66.667 0.00 0.00 0.00 5.03
8 9 2.815647 GCTCCCGCTTCAACCTCG 60.816 66.667 0.00 0.00 0.00 4.63
9 10 1.301677 CTTGCTCCCGCTTCAACCTC 61.302 60.000 0.00 0.00 36.97 3.85
10 11 1.302832 CTTGCTCCCGCTTCAACCT 60.303 57.895 0.00 0.00 36.97 3.50
11 12 1.302511 TCTTGCTCCCGCTTCAACC 60.303 57.895 0.00 0.00 36.97 3.77
14 15 1.004560 CTGTCTTGCTCCCGCTTCA 60.005 57.895 0.00 0.00 36.97 3.02
16 17 1.302033 CACTGTCTTGCTCCCGCTT 60.302 57.895 0.00 0.00 36.97 4.68
18 19 3.426568 GCACTGTCTTGCTCCCGC 61.427 66.667 0.00 0.00 39.59 6.13
21 22 2.029844 GACCGCACTGTCTTGCTCC 61.030 63.158 0.00 0.00 40.62 4.70
22 23 2.029844 GGACCGCACTGTCTTGCTC 61.030 63.158 0.00 0.00 40.62 4.26
23 24 2.031163 GGACCGCACTGTCTTGCT 59.969 61.111 0.00 0.00 40.62 3.91
24 25 3.414700 CGGACCGCACTGTCTTGC 61.415 66.667 0.00 0.00 39.28 4.01
25 26 2.022129 GACGGACCGCACTGTCTTG 61.022 63.158 15.39 0.00 41.37 3.02
26 27 2.338984 GACGGACCGCACTGTCTT 59.661 61.111 15.39 0.00 41.37 3.01
27 28 4.039357 CGACGGACCGCACTGTCT 62.039 66.667 15.39 0.00 42.11 3.41
30 31 4.129737 ATCCGACGGACCGCACTG 62.130 66.667 21.02 5.30 32.98 3.66
31 32 4.129737 CATCCGACGGACCGCACT 62.130 66.667 21.02 0.00 32.98 4.40
32 33 3.636313 TTCATCCGACGGACCGCAC 62.636 63.158 21.02 7.73 32.98 5.34
33 34 3.350909 CTTCATCCGACGGACCGCA 62.351 63.158 21.02 2.83 32.98 5.69
34 35 2.582498 CTTCATCCGACGGACCGC 60.582 66.667 21.02 6.00 32.98 5.68
35 36 2.104331 CCTTCATCCGACGGACCG 59.896 66.667 21.02 13.61 32.98 4.79
36 37 2.499685 CCCTTCATCCGACGGACC 59.500 66.667 21.02 0.00 32.98 4.46
37 38 2.499685 CCCCTTCATCCGACGGAC 59.500 66.667 21.02 0.00 32.98 4.79
38 39 3.467226 GCCCCTTCATCCGACGGA 61.467 66.667 20.85 20.85 32.15 4.69
39 40 3.447025 GAGCCCCTTCATCCGACGG 62.447 68.421 7.84 7.84 0.00 4.79
40 41 2.032860 ATGAGCCCCTTCATCCGACG 62.033 60.000 0.00 0.00 32.42 5.12
41 42 0.250081 GATGAGCCCCTTCATCCGAC 60.250 60.000 4.98 0.00 44.93 4.79
42 43 2.136791 GATGAGCCCCTTCATCCGA 58.863 57.895 4.98 0.00 44.93 4.55
43 44 4.787871 GATGAGCCCCTTCATCCG 57.212 61.111 4.98 0.00 44.93 4.18
46 47 1.704070 GAGGATGATGAGCCCCTTCAT 59.296 52.381 5.22 5.22 40.91 2.57
47 48 1.135094 GAGGATGATGAGCCCCTTCA 58.865 55.000 0.00 0.00 34.08 3.02
48 49 1.347378 GAGAGGATGATGAGCCCCTTC 59.653 57.143 0.00 0.00 0.00 3.46
49 50 1.433121 GAGAGGATGATGAGCCCCTT 58.567 55.000 0.00 0.00 0.00 3.95
50 51 0.473501 GGAGAGGATGATGAGCCCCT 60.474 60.000 0.00 0.00 0.00 4.79
51 52 1.825281 CGGAGAGGATGATGAGCCCC 61.825 65.000 0.00 0.00 0.00 5.80
52 53 0.829602 TCGGAGAGGATGATGAGCCC 60.830 60.000 0.00 0.00 0.00 5.19
53 54 0.316841 GTCGGAGAGGATGATGAGCC 59.683 60.000 0.00 0.00 36.95 4.70
54 55 1.269448 GAGTCGGAGAGGATGATGAGC 59.731 57.143 0.00 0.00 36.95 4.26
55 56 2.553602 CAGAGTCGGAGAGGATGATGAG 59.446 54.545 0.00 0.00 36.95 2.90
56 57 2.173569 TCAGAGTCGGAGAGGATGATGA 59.826 50.000 0.00 0.00 36.95 2.92
57 58 2.293122 GTCAGAGTCGGAGAGGATGATG 59.707 54.545 0.00 0.00 36.95 3.07
58 59 2.582052 GTCAGAGTCGGAGAGGATGAT 58.418 52.381 0.00 0.00 36.95 2.45
59 60 1.744114 CGTCAGAGTCGGAGAGGATGA 60.744 57.143 0.00 0.00 36.95 2.92
60 61 0.660488 CGTCAGAGTCGGAGAGGATG 59.340 60.000 0.00 0.00 36.95 3.51
61 62 0.542333 TCGTCAGAGTCGGAGAGGAT 59.458 55.000 0.00 0.00 36.95 3.24
62 63 0.391395 GTCGTCAGAGTCGGAGAGGA 60.391 60.000 0.00 0.00 36.95 3.71
63 64 1.697772 CGTCGTCAGAGTCGGAGAGG 61.698 65.000 0.00 0.00 36.95 3.69
64 65 1.697772 CCGTCGTCAGAGTCGGAGAG 61.698 65.000 0.00 0.00 44.86 3.20
65 66 1.740664 CCGTCGTCAGAGTCGGAGA 60.741 63.158 0.00 0.00 44.86 3.71
66 67 2.785921 CCGTCGTCAGAGTCGGAG 59.214 66.667 0.00 0.00 44.86 4.63
67 68 3.429141 GCCGTCGTCAGAGTCGGA 61.429 66.667 10.81 0.00 44.86 4.55
68 69 4.813526 CGCCGTCGTCAGAGTCGG 62.814 72.222 0.00 0.00 44.86 4.79
69 70 3.785499 TCGCCGTCGTCAGAGTCG 61.785 66.667 0.00 0.00 36.96 4.18
70 71 2.202324 GTCGCCGTCGTCAGAGTC 60.202 66.667 0.00 0.00 36.96 3.36
71 72 2.549198 TTGTCGCCGTCGTCAGAGT 61.549 57.895 0.00 0.00 35.42 3.24
72 73 2.081212 GTTGTCGCCGTCGTCAGAG 61.081 63.158 0.00 0.00 35.42 3.35
73 74 2.050714 GTTGTCGCCGTCGTCAGA 60.051 61.111 0.00 0.00 35.42 3.27
74 75 2.050351 AGTTGTCGCCGTCGTCAG 60.050 61.111 0.00 0.00 35.42 3.51
75 76 2.354188 CAGTTGTCGCCGTCGTCA 60.354 61.111 0.00 0.00 36.96 4.35
76 77 3.764049 GCAGTTGTCGCCGTCGTC 61.764 66.667 0.00 0.00 36.96 4.20
77 78 3.858868 ATGCAGTTGTCGCCGTCGT 62.859 57.895 0.00 0.00 36.96 4.34
78 79 3.071459 GATGCAGTTGTCGCCGTCG 62.071 63.158 0.00 0.00 0.00 5.12
79 80 1.687494 GAGATGCAGTTGTCGCCGTC 61.687 60.000 0.00 0.00 0.00 4.79
80 81 1.738099 GAGATGCAGTTGTCGCCGT 60.738 57.895 0.00 0.00 0.00 5.68
81 82 2.456119 GGAGATGCAGTTGTCGCCG 61.456 63.158 0.00 0.00 0.00 6.46
82 83 1.078848 AGGAGATGCAGTTGTCGCC 60.079 57.895 0.00 0.00 34.91 5.54
83 84 1.416813 CGAGGAGATGCAGTTGTCGC 61.417 60.000 0.00 0.00 0.00 5.19
84 85 0.109086 ACGAGGAGATGCAGTTGTCG 60.109 55.000 0.00 0.00 0.00 4.35
85 86 1.067565 TGACGAGGAGATGCAGTTGTC 60.068 52.381 0.00 0.00 0.00 3.18
86 87 0.969149 TGACGAGGAGATGCAGTTGT 59.031 50.000 0.00 0.00 0.00 3.32
87 88 1.203287 TCTGACGAGGAGATGCAGTTG 59.797 52.381 0.00 0.00 0.00 3.16
88 89 1.203523 GTCTGACGAGGAGATGCAGTT 59.796 52.381 0.00 0.00 0.00 3.16
89 90 0.814457 GTCTGACGAGGAGATGCAGT 59.186 55.000 0.00 0.00 0.00 4.40
90 91 0.248417 CGTCTGACGAGGAGATGCAG 60.248 60.000 24.86 0.00 46.05 4.41
91 92 0.676782 TCGTCTGACGAGGAGATGCA 60.677 55.000 27.26 3.60 46.73 3.96
92 93 2.099143 TCGTCTGACGAGGAGATGC 58.901 57.895 27.26 0.00 46.73 3.91
101 102 1.080705 GGGTCTTGGTCGTCTGACG 60.081 63.158 23.33 23.33 46.49 4.35
102 103 0.244178 GAGGGTCTTGGTCGTCTGAC 59.756 60.000 0.00 0.00 44.72 3.51
103 104 0.898789 GGAGGGTCTTGGTCGTCTGA 60.899 60.000 0.00 0.00 0.00 3.27
104 105 1.185618 TGGAGGGTCTTGGTCGTCTG 61.186 60.000 0.00 0.00 0.00 3.51
105 106 0.252284 ATGGAGGGTCTTGGTCGTCT 60.252 55.000 0.00 0.00 0.00 4.18
106 107 0.175989 GATGGAGGGTCTTGGTCGTC 59.824 60.000 0.00 0.00 0.00 4.20
107 108 0.544357 TGATGGAGGGTCTTGGTCGT 60.544 55.000 0.00 0.00 0.00 4.34
108 109 0.176680 CTGATGGAGGGTCTTGGTCG 59.823 60.000 0.00 0.00 0.00 4.79
109 110 0.107459 GCTGATGGAGGGTCTTGGTC 60.107 60.000 0.00 0.00 0.00 4.02
110 111 1.566298 GGCTGATGGAGGGTCTTGGT 61.566 60.000 0.00 0.00 0.00 3.67
111 112 1.225704 GGCTGATGGAGGGTCTTGG 59.774 63.158 0.00 0.00 0.00 3.61
112 113 0.179936 GAGGCTGATGGAGGGTCTTG 59.820 60.000 0.00 0.00 0.00 3.02
113 114 1.333636 CGAGGCTGATGGAGGGTCTT 61.334 60.000 0.00 0.00 0.00 3.01
114 115 1.760086 CGAGGCTGATGGAGGGTCT 60.760 63.158 0.00 0.00 0.00 3.85
115 116 1.330655 TTCGAGGCTGATGGAGGGTC 61.331 60.000 0.00 0.00 0.00 4.46
116 117 0.692419 ATTCGAGGCTGATGGAGGGT 60.692 55.000 0.00 0.00 0.00 4.34
117 118 0.250209 CATTCGAGGCTGATGGAGGG 60.250 60.000 0.00 0.00 0.00 4.30
118 119 0.883814 GCATTCGAGGCTGATGGAGG 60.884 60.000 0.00 0.00 0.00 4.30
119 120 0.883814 GGCATTCGAGGCTGATGGAG 60.884 60.000 10.43 0.00 0.00 3.86
120 121 1.146930 GGCATTCGAGGCTGATGGA 59.853 57.895 10.43 0.00 0.00 3.41
121 122 0.394192 TAGGCATTCGAGGCTGATGG 59.606 55.000 10.55 0.00 44.89 3.51
122 123 2.469274 ATAGGCATTCGAGGCTGATG 57.531 50.000 10.55 0.57 44.89 3.07
123 124 2.093764 GCTATAGGCATTCGAGGCTGAT 60.094 50.000 10.55 7.11 44.89 2.90
124 125 1.273606 GCTATAGGCATTCGAGGCTGA 59.726 52.381 10.55 0.63 44.89 4.26
125 126 1.274728 AGCTATAGGCATTCGAGGCTG 59.725 52.381 10.55 0.00 44.89 4.85
127 128 1.719600 CAGCTATAGGCATTCGAGGC 58.280 55.000 1.04 2.79 44.79 4.70
128 129 1.719600 GCAGCTATAGGCATTCGAGG 58.280 55.000 1.04 0.00 44.79 4.63
129 130 1.344458 CGCAGCTATAGGCATTCGAG 58.656 55.000 1.04 0.00 44.79 4.04
130 131 3.496898 CGCAGCTATAGGCATTCGA 57.503 52.632 1.04 0.00 44.79 3.71
144 145 2.202610 TTCCGATCGTCAGCGCAG 60.203 61.111 15.09 0.00 38.14 5.18
145 146 2.202610 CTTCCGATCGTCAGCGCA 60.203 61.111 15.09 0.00 38.14 6.09
146 147 1.352156 AAACTTCCGATCGTCAGCGC 61.352 55.000 15.09 0.00 38.14 5.92
147 148 0.366871 CAAACTTCCGATCGTCAGCG 59.633 55.000 15.09 0.00 39.92 5.18
148 149 1.429463 ACAAACTTCCGATCGTCAGC 58.571 50.000 15.09 0.00 0.00 4.26
149 150 5.779806 ATTAACAAACTTCCGATCGTCAG 57.220 39.130 15.09 11.51 0.00 3.51
150 151 6.477688 GGATATTAACAAACTTCCGATCGTCA 59.522 38.462 15.09 0.00 0.00 4.35
151 152 6.345565 CGGATATTAACAAACTTCCGATCGTC 60.346 42.308 15.09 0.00 46.84 4.20
152 153 5.461078 CGGATATTAACAAACTTCCGATCGT 59.539 40.000 15.09 0.00 46.84 3.73
153 154 5.461078 ACGGATATTAACAAACTTCCGATCG 59.539 40.000 15.29 8.51 46.84 3.69
154 155 6.839820 ACGGATATTAACAAACTTCCGATC 57.160 37.500 15.29 0.00 46.84 3.69
155 156 7.469260 CAAACGGATATTAACAAACTTCCGAT 58.531 34.615 15.29 1.25 46.84 4.18
156 157 6.621164 GCAAACGGATATTAACAAACTTCCGA 60.621 38.462 15.29 0.00 46.84 4.55
158 159 6.383415 TGCAAACGGATATTAACAAACTTCC 58.617 36.000 0.00 0.00 0.00 3.46
159 160 6.033513 GCTGCAAACGGATATTAACAAACTTC 59.966 38.462 0.00 0.00 0.00 3.01
160 161 5.861787 GCTGCAAACGGATATTAACAAACTT 59.138 36.000 0.00 0.00 0.00 2.66
161 162 5.399013 GCTGCAAACGGATATTAACAAACT 58.601 37.500 0.00 0.00 0.00 2.66
162 163 4.561213 GGCTGCAAACGGATATTAACAAAC 59.439 41.667 0.50 0.00 0.00 2.93
163 164 4.673061 CGGCTGCAAACGGATATTAACAAA 60.673 41.667 0.50 0.00 0.00 2.83
164 165 3.181505 CGGCTGCAAACGGATATTAACAA 60.182 43.478 0.50 0.00 0.00 2.83
165 166 2.353269 CGGCTGCAAACGGATATTAACA 59.647 45.455 0.50 0.00 0.00 2.41
166 167 2.610374 TCGGCTGCAAACGGATATTAAC 59.390 45.455 0.50 0.00 0.00 2.01
167 168 2.907634 TCGGCTGCAAACGGATATTAA 58.092 42.857 0.50 0.00 0.00 1.40
168 169 2.605837 TCGGCTGCAAACGGATATTA 57.394 45.000 0.50 0.00 0.00 0.98
169 170 1.873591 GATCGGCTGCAAACGGATATT 59.126 47.619 0.50 0.00 0.00 1.28
170 171 1.070758 AGATCGGCTGCAAACGGATAT 59.929 47.619 0.50 4.50 0.00 1.63
171 172 0.464036 AGATCGGCTGCAAACGGATA 59.536 50.000 0.50 0.00 0.00 2.59
172 173 0.392998 AAGATCGGCTGCAAACGGAT 60.393 50.000 0.50 9.02 0.00 4.18
173 174 1.003839 AAGATCGGCTGCAAACGGA 60.004 52.632 0.50 4.75 0.00 4.69
174 175 1.135315 CAAGATCGGCTGCAAACGG 59.865 57.895 0.50 0.00 0.00 4.44
175 176 0.453282 CACAAGATCGGCTGCAAACG 60.453 55.000 0.50 3.50 0.00 3.60
176 177 0.593128 ACACAAGATCGGCTGCAAAC 59.407 50.000 0.50 0.00 0.00 2.93
177 178 1.266718 GAACACAAGATCGGCTGCAAA 59.733 47.619 0.50 0.00 0.00 3.68
178 179 0.874390 GAACACAAGATCGGCTGCAA 59.126 50.000 0.50 0.00 0.00 4.08
179 180 0.955428 GGAACACAAGATCGGCTGCA 60.955 55.000 0.50 0.00 0.00 4.41
180 181 0.674895 AGGAACACAAGATCGGCTGC 60.675 55.000 0.00 0.00 0.00 5.25
181 182 2.672961 TAGGAACACAAGATCGGCTG 57.327 50.000 0.00 0.00 0.00 4.85
182 183 2.678190 GCTTAGGAACACAAGATCGGCT 60.678 50.000 0.00 0.00 0.00 5.52
183 184 1.666189 GCTTAGGAACACAAGATCGGC 59.334 52.381 0.00 0.00 0.00 5.54
184 185 2.932614 CTGCTTAGGAACACAAGATCGG 59.067 50.000 0.00 0.00 0.00 4.18
185 186 2.349886 GCTGCTTAGGAACACAAGATCG 59.650 50.000 0.00 0.00 0.00 3.69
186 187 2.349886 CGCTGCTTAGGAACACAAGATC 59.650 50.000 0.00 0.00 0.00 2.75
187 188 2.028112 TCGCTGCTTAGGAACACAAGAT 60.028 45.455 0.00 0.00 0.00 2.40
188 189 1.343142 TCGCTGCTTAGGAACACAAGA 59.657 47.619 0.00 0.00 0.00 3.02
189 190 1.795768 TCGCTGCTTAGGAACACAAG 58.204 50.000 0.00 0.00 0.00 3.16
190 191 2.472695 ATCGCTGCTTAGGAACACAA 57.527 45.000 0.00 0.00 0.00 3.33
191 192 2.472695 AATCGCTGCTTAGGAACACA 57.527 45.000 0.00 0.00 0.00 3.72
192 193 3.831715 AAAATCGCTGCTTAGGAACAC 57.168 42.857 0.00 0.00 0.00 3.32
193 194 6.072175 ACAATAAAAATCGCTGCTTAGGAACA 60.072 34.615 0.00 0.00 0.00 3.18
194 195 6.322491 ACAATAAAAATCGCTGCTTAGGAAC 58.678 36.000 0.00 0.00 0.00 3.62
195 196 6.509418 ACAATAAAAATCGCTGCTTAGGAA 57.491 33.333 0.00 0.00 0.00 3.36
196 197 6.509418 AACAATAAAAATCGCTGCTTAGGA 57.491 33.333 0.00 0.00 0.00 2.94
197 198 5.452302 CGAACAATAAAAATCGCTGCTTAGG 59.548 40.000 0.00 0.00 0.00 2.69
198 199 6.021596 ACGAACAATAAAAATCGCTGCTTAG 58.978 36.000 0.00 0.00 38.80 2.18
199 200 5.933790 ACGAACAATAAAAATCGCTGCTTA 58.066 33.333 0.00 0.00 38.80 3.09
200 201 4.794169 ACGAACAATAAAAATCGCTGCTT 58.206 34.783 0.00 0.00 38.80 3.91
201 202 4.403453 GACGAACAATAAAAATCGCTGCT 58.597 39.130 0.00 0.00 38.80 4.24
202 203 3.235179 CGACGAACAATAAAAATCGCTGC 59.765 43.478 0.00 0.00 38.80 5.25
203 204 4.391358 ACGACGAACAATAAAAATCGCTG 58.609 39.130 0.00 0.00 38.80 5.18
204 205 4.657075 ACGACGAACAATAAAAATCGCT 57.343 36.364 0.00 0.00 38.80 4.93
205 206 5.337512 TCAAACGACGAACAATAAAAATCGC 59.662 36.000 0.00 0.00 38.80 4.58
206 207 6.882312 TCAAACGACGAACAATAAAAATCG 57.118 33.333 0.00 0.00 40.90 3.34
207 208 8.355806 GTGATCAAACGACGAACAATAAAAATC 58.644 33.333 0.00 0.00 0.00 2.17
208 209 7.858382 TGTGATCAAACGACGAACAATAAAAAT 59.142 29.630 0.00 0.00 0.00 1.82
209 210 7.187480 TGTGATCAAACGACGAACAATAAAAA 58.813 30.769 0.00 0.00 0.00 1.94
210 211 6.716438 TGTGATCAAACGACGAACAATAAAA 58.284 32.000 0.00 0.00 0.00 1.52
211 212 6.288426 TGTGATCAAACGACGAACAATAAA 57.712 33.333 0.00 0.00 0.00 1.40
212 213 5.908916 TGTGATCAAACGACGAACAATAA 57.091 34.783 0.00 0.00 0.00 1.40
213 214 6.254804 CCTATGTGATCAAACGACGAACAATA 59.745 38.462 0.00 0.00 0.00 1.90
214 215 5.063438 CCTATGTGATCAAACGACGAACAAT 59.937 40.000 0.00 0.00 0.00 2.71
215 216 4.387559 CCTATGTGATCAAACGACGAACAA 59.612 41.667 0.00 0.00 0.00 2.83
216 217 3.924073 CCTATGTGATCAAACGACGAACA 59.076 43.478 0.00 0.00 0.00 3.18
217 218 3.924686 ACCTATGTGATCAAACGACGAAC 59.075 43.478 0.00 0.00 0.00 3.95
218 219 4.182693 ACCTATGTGATCAAACGACGAA 57.817 40.909 0.00 0.00 0.00 3.85
219 220 3.861276 ACCTATGTGATCAAACGACGA 57.139 42.857 0.00 0.00 0.00 4.20
220 221 5.337554 TCTAACCTATGTGATCAAACGACG 58.662 41.667 0.00 0.00 0.00 5.12
221 222 6.978659 TGATCTAACCTATGTGATCAAACGAC 59.021 38.462 0.00 0.00 41.25 4.34
222 223 7.107639 TGATCTAACCTATGTGATCAAACGA 57.892 36.000 0.00 0.00 41.25 3.85
223 224 7.770801 TTGATCTAACCTATGTGATCAAACG 57.229 36.000 12.84 0.00 46.37 3.60
227 228 9.112725 CAAACATTGATCTAACCTATGTGATCA 57.887 33.333 0.00 0.00 42.11 2.92
228 229 8.072567 GCAAACATTGATCTAACCTATGTGATC 58.927 37.037 0.00 0.00 36.72 2.92
229 230 7.557358 TGCAAACATTGATCTAACCTATGTGAT 59.443 33.333 0.00 0.00 30.43 3.06
230 231 6.883756 TGCAAACATTGATCTAACCTATGTGA 59.116 34.615 0.00 0.00 30.43 3.58
231 232 7.087409 TGCAAACATTGATCTAACCTATGTG 57.913 36.000 0.00 0.00 30.43 3.21
232 233 7.340232 ACATGCAAACATTGATCTAACCTATGT 59.660 33.333 0.00 0.00 32.87 2.29
233 234 7.646526 CACATGCAAACATTGATCTAACCTATG 59.353 37.037 0.00 0.00 32.87 2.23
234 235 7.340232 ACACATGCAAACATTGATCTAACCTAT 59.660 33.333 0.00 0.00 32.87 2.57
235 236 6.658816 ACACATGCAAACATTGATCTAACCTA 59.341 34.615 0.00 0.00 32.87 3.08
236 237 5.477984 ACACATGCAAACATTGATCTAACCT 59.522 36.000 0.00 0.00 32.87 3.50
237 238 5.713025 ACACATGCAAACATTGATCTAACC 58.287 37.500 0.00 0.00 32.87 2.85
238 239 7.530010 ACTACACATGCAAACATTGATCTAAC 58.470 34.615 0.00 0.00 32.87 2.34
239 240 7.686438 ACTACACATGCAAACATTGATCTAA 57.314 32.000 0.00 0.00 32.87 2.10
240 241 8.962884 ATACTACACATGCAAACATTGATCTA 57.037 30.769 0.00 0.00 32.87 1.98
241 242 7.870509 ATACTACACATGCAAACATTGATCT 57.129 32.000 0.00 0.00 32.87 2.75
242 243 9.045223 TCTATACTACACATGCAAACATTGATC 57.955 33.333 0.00 0.00 32.87 2.92
243 244 8.962884 TCTATACTACACATGCAAACATTGAT 57.037 30.769 0.00 0.00 32.87 2.57
244 245 8.962884 ATCTATACTACACATGCAAACATTGA 57.037 30.769 0.00 0.00 32.87 2.57
249 250 9.587772 CCCTATATCTATACTACACATGCAAAC 57.412 37.037 0.00 0.00 0.00 2.93
250 251 9.321532 ACCCTATATCTATACTACACATGCAAA 57.678 33.333 0.00 0.00 0.00 3.68
251 252 8.749354 CACCCTATATCTATACTACACATGCAA 58.251 37.037 0.00 0.00 0.00 4.08
252 253 7.342026 CCACCCTATATCTATACTACACATGCA 59.658 40.741 0.00 0.00 0.00 3.96
253 254 7.684670 GCCACCCTATATCTATACTACACATGC 60.685 44.444 0.00 0.00 0.00 4.06
254 255 7.468768 CGCCACCCTATATCTATACTACACATG 60.469 44.444 0.00 0.00 0.00 3.21
255 256 6.546403 CGCCACCCTATATCTATACTACACAT 59.454 42.308 0.00 0.00 0.00 3.21
256 257 5.884232 CGCCACCCTATATCTATACTACACA 59.116 44.000 0.00 0.00 0.00 3.72
257 258 5.298777 CCGCCACCCTATATCTATACTACAC 59.701 48.000 0.00 0.00 0.00 2.90
258 259 5.443283 CCGCCACCCTATATCTATACTACA 58.557 45.833 0.00 0.00 0.00 2.74
259 260 4.826183 CCCGCCACCCTATATCTATACTAC 59.174 50.000 0.00 0.00 0.00 2.73
260 261 4.479796 ACCCGCCACCCTATATCTATACTA 59.520 45.833 0.00 0.00 0.00 1.82
261 262 3.271490 ACCCGCCACCCTATATCTATACT 59.729 47.826 0.00 0.00 0.00 2.12
262 263 3.639952 ACCCGCCACCCTATATCTATAC 58.360 50.000 0.00 0.00 0.00 1.47
263 264 4.686944 CGTACCCGCCACCCTATATCTATA 60.687 50.000 0.00 0.00 0.00 1.31
264 265 2.942604 ACCCGCCACCCTATATCTAT 57.057 50.000 0.00 0.00 0.00 1.98
265 266 2.618816 CGTACCCGCCACCCTATATCTA 60.619 54.545 0.00 0.00 0.00 1.98
266 267 1.889699 CGTACCCGCCACCCTATATCT 60.890 57.143 0.00 0.00 0.00 1.98
267 268 0.529378 CGTACCCGCCACCCTATATC 59.471 60.000 0.00 0.00 0.00 1.63
268 269 0.112995 TCGTACCCGCCACCCTATAT 59.887 55.000 0.00 0.00 0.00 0.86
269 270 0.538057 CTCGTACCCGCCACCCTATA 60.538 60.000 0.00 0.00 0.00 1.31
270 271 1.831286 CTCGTACCCGCCACCCTAT 60.831 63.158 0.00 0.00 0.00 2.57
271 272 2.288642 ATCTCGTACCCGCCACCCTA 62.289 60.000 0.00 0.00 0.00 3.53
272 273 2.288642 TATCTCGTACCCGCCACCCT 62.289 60.000 0.00 0.00 0.00 4.34
273 274 1.829533 TATCTCGTACCCGCCACCC 60.830 63.158 0.00 0.00 0.00 4.61
274 275 1.361632 GTATCTCGTACCCGCCACC 59.638 63.158 0.00 0.00 0.00 4.61
275 276 1.009222 CGTATCTCGTACCCGCCAC 60.009 63.158 0.00 0.00 34.52 5.01
276 277 1.153188 TCGTATCTCGTACCCGCCA 60.153 57.895 0.00 0.00 40.80 5.69
277 278 1.573436 CTCGTATCTCGTACCCGCC 59.427 63.158 0.00 0.00 40.80 6.13
278 279 1.082235 GCTCGTATCTCGTACCCGC 60.082 63.158 0.00 0.00 40.80 6.13
279 280 1.203563 CGCTCGTATCTCGTACCCG 59.796 63.158 0.00 0.00 40.80 5.28
280 281 0.882042 TCCGCTCGTATCTCGTACCC 60.882 60.000 0.00 0.00 40.80 3.69
281 282 1.136029 CATCCGCTCGTATCTCGTACC 60.136 57.143 0.00 0.00 40.80 3.34
282 283 1.725292 GCATCCGCTCGTATCTCGTAC 60.725 57.143 0.00 0.00 40.80 3.67
283 284 0.516001 GCATCCGCTCGTATCTCGTA 59.484 55.000 0.00 0.00 40.80 3.43
284 285 1.283181 GCATCCGCTCGTATCTCGT 59.717 57.895 0.00 0.00 40.80 4.18
285 286 0.727457 CTGCATCCGCTCGTATCTCG 60.727 60.000 0.00 0.00 39.64 4.04
286 287 0.387878 CCTGCATCCGCTCGTATCTC 60.388 60.000 0.00 0.00 39.64 2.75
287 288 1.662608 CCTGCATCCGCTCGTATCT 59.337 57.895 0.00 0.00 39.64 1.98
288 289 2.024319 GCCTGCATCCGCTCGTATC 61.024 63.158 0.00 0.00 39.64 2.24
289 290 2.029666 GCCTGCATCCGCTCGTAT 59.970 61.111 0.00 0.00 39.64 3.06
290 291 3.457263 TGCCTGCATCCGCTCGTA 61.457 61.111 0.00 0.00 39.64 3.43
292 293 4.827087 AGTGCCTGCATCCGCTCG 62.827 66.667 0.00 0.00 39.64 5.03
293 294 2.894387 GAGTGCCTGCATCCGCTC 60.894 66.667 10.37 10.37 39.64 5.03
294 295 3.397439 AGAGTGCCTGCATCCGCT 61.397 61.111 0.00 0.00 39.64 5.52
295 296 3.200593 CAGAGTGCCTGCATCCGC 61.201 66.667 0.00 0.00 35.89 5.54
296 297 2.513204 CCAGAGTGCCTGCATCCG 60.513 66.667 0.00 0.00 41.57 4.18
297 298 1.451028 GTCCAGAGTGCCTGCATCC 60.451 63.158 0.00 0.00 41.57 3.51
298 299 0.461693 GAGTCCAGAGTGCCTGCATC 60.462 60.000 0.00 0.00 41.57 3.91
299 300 1.196766 TGAGTCCAGAGTGCCTGCAT 61.197 55.000 0.00 0.00 41.57 3.96
300 301 1.410050 TTGAGTCCAGAGTGCCTGCA 61.410 55.000 0.00 0.00 41.57 4.41
301 302 0.035630 ATTGAGTCCAGAGTGCCTGC 60.036 55.000 0.00 0.00 41.57 4.85
302 303 2.027377 AGAATTGAGTCCAGAGTGCCTG 60.027 50.000 0.00 0.00 42.55 4.85
303 304 2.264455 AGAATTGAGTCCAGAGTGCCT 58.736 47.619 0.00 0.00 0.00 4.75
304 305 2.777832 AGAATTGAGTCCAGAGTGCC 57.222 50.000 0.00 0.00 0.00 5.01
305 306 3.006247 GGAAGAATTGAGTCCAGAGTGC 58.994 50.000 0.00 0.00 0.00 4.40
306 307 3.008375 TGGGAAGAATTGAGTCCAGAGTG 59.992 47.826 0.00 0.00 32.70 3.51
307 308 3.251484 TGGGAAGAATTGAGTCCAGAGT 58.749 45.455 0.00 0.00 32.70 3.24
308 309 3.988976 TGGGAAGAATTGAGTCCAGAG 57.011 47.619 0.00 0.00 32.70 3.35
309 310 3.845992 TGATGGGAAGAATTGAGTCCAGA 59.154 43.478 0.00 0.00 32.70 3.86
310 311 4.226427 TGATGGGAAGAATTGAGTCCAG 57.774 45.455 0.00 0.00 32.70 3.86
311 312 4.335416 GTTGATGGGAAGAATTGAGTCCA 58.665 43.478 0.00 0.00 32.70 4.02
312 313 3.696548 GGTTGATGGGAAGAATTGAGTCC 59.303 47.826 0.00 0.00 0.00 3.85
313 314 4.335416 TGGTTGATGGGAAGAATTGAGTC 58.665 43.478 0.00 0.00 0.00 3.36
314 315 4.387026 TGGTTGATGGGAAGAATTGAGT 57.613 40.909 0.00 0.00 0.00 3.41
315 316 5.655532 AGAATGGTTGATGGGAAGAATTGAG 59.344 40.000 0.00 0.00 0.00 3.02
316 317 5.582953 AGAATGGTTGATGGGAAGAATTGA 58.417 37.500 0.00 0.00 0.00 2.57
317 318 5.927281 AGAATGGTTGATGGGAAGAATTG 57.073 39.130 0.00 0.00 0.00 2.32
318 319 6.735556 ACTAGAATGGTTGATGGGAAGAATT 58.264 36.000 0.00 0.00 0.00 2.17
319 320 6.332976 ACTAGAATGGTTGATGGGAAGAAT 57.667 37.500 0.00 0.00 0.00 2.40
320 321 5.779241 ACTAGAATGGTTGATGGGAAGAA 57.221 39.130 0.00 0.00 0.00 2.52
321 322 5.488919 AGAACTAGAATGGTTGATGGGAAGA 59.511 40.000 0.00 0.00 41.06 2.87
322 323 5.749462 AGAACTAGAATGGTTGATGGGAAG 58.251 41.667 0.00 0.00 41.06 3.46
323 324 5.779241 AGAACTAGAATGGTTGATGGGAA 57.221 39.130 0.00 0.00 41.06 3.97
324 325 5.366768 CCTAGAACTAGAATGGTTGATGGGA 59.633 44.000 10.04 0.00 41.06 4.37
325 326 5.131142 ACCTAGAACTAGAATGGTTGATGGG 59.869 44.000 10.04 0.00 41.06 4.00
326 327 6.051717 CACCTAGAACTAGAATGGTTGATGG 58.948 44.000 10.04 0.00 41.06 3.51
327 328 6.051717 CCACCTAGAACTAGAATGGTTGATG 58.948 44.000 16.77 1.05 41.06 3.07
328 329 5.964477 TCCACCTAGAACTAGAATGGTTGAT 59.036 40.000 20.73 0.00 41.06 2.57
329 330 5.338632 TCCACCTAGAACTAGAATGGTTGA 58.661 41.667 20.73 8.65 41.06 3.18
330 331 5.677319 TCCACCTAGAACTAGAATGGTTG 57.323 43.478 20.73 7.10 41.06 3.77
331 332 6.023603 TCTTCCACCTAGAACTAGAATGGTT 58.976 40.000 20.73 0.00 44.88 3.67
332 333 5.590818 TCTTCCACCTAGAACTAGAATGGT 58.409 41.667 20.73 7.79 38.89 3.55
333 334 5.452636 GCTCTTCCACCTAGAACTAGAATGG 60.453 48.000 17.96 17.96 39.03 3.16
334 335 5.127845 TGCTCTTCCACCTAGAACTAGAATG 59.872 44.000 10.04 7.86 35.21 2.67
335 336 5.273208 TGCTCTTCCACCTAGAACTAGAAT 58.727 41.667 10.04 0.00 35.21 2.40
336 337 4.673968 TGCTCTTCCACCTAGAACTAGAA 58.326 43.478 10.04 0.00 35.21 2.10
337 338 4.317530 TGCTCTTCCACCTAGAACTAGA 57.682 45.455 10.04 0.00 35.21 2.43
338 339 4.404073 ACATGCTCTTCCACCTAGAACTAG 59.596 45.833 0.00 2.23 0.00 2.57
339 340 4.353777 ACATGCTCTTCCACCTAGAACTA 58.646 43.478 0.00 0.00 0.00 2.24
340 341 3.177228 ACATGCTCTTCCACCTAGAACT 58.823 45.455 0.00 0.00 0.00 3.01
341 342 3.618690 ACATGCTCTTCCACCTAGAAC 57.381 47.619 0.00 0.00 0.00 3.01
342 343 4.093743 TGTACATGCTCTTCCACCTAGAA 58.906 43.478 0.00 0.00 0.00 2.10
343 344 3.701542 CTGTACATGCTCTTCCACCTAGA 59.298 47.826 0.00 0.00 0.00 2.43
344 345 3.739519 GCTGTACATGCTCTTCCACCTAG 60.740 52.174 0.00 0.00 0.00 3.02
345 346 2.168521 GCTGTACATGCTCTTCCACCTA 59.831 50.000 0.00 0.00 0.00 3.08
346 347 1.065854 GCTGTACATGCTCTTCCACCT 60.066 52.381 0.00 0.00 0.00 4.00
347 348 1.373570 GCTGTACATGCTCTTCCACC 58.626 55.000 0.00 0.00 0.00 4.61
348 349 1.339055 TGGCTGTACATGCTCTTCCAC 60.339 52.381 14.28 1.06 0.00 4.02
349 350 0.983467 TGGCTGTACATGCTCTTCCA 59.017 50.000 14.28 0.00 0.00 3.53
350 351 1.373570 GTGGCTGTACATGCTCTTCC 58.626 55.000 14.28 0.00 0.00 3.46
351 352 1.002366 CGTGGCTGTACATGCTCTTC 58.998 55.000 14.28 2.41 0.00 2.87
352 353 0.608130 TCGTGGCTGTACATGCTCTT 59.392 50.000 14.28 0.00 0.00 2.85
353 354 0.826715 ATCGTGGCTGTACATGCTCT 59.173 50.000 14.28 0.00 0.00 4.09
354 355 0.933097 CATCGTGGCTGTACATGCTC 59.067 55.000 14.28 7.58 0.00 4.26
355 356 0.462581 CCATCGTGGCTGTACATGCT 60.463 55.000 14.28 0.00 0.00 3.79
356 357 2.016961 CCATCGTGGCTGTACATGC 58.983 57.895 0.00 2.21 0.00 4.06
366 367 3.110139 CGGATTTGGCCATCGTGG 58.890 61.111 6.09 0.00 41.55 4.94
367 368 2.408835 GCGGATTTGGCCATCGTG 59.591 61.111 6.09 0.00 0.00 4.35
384 385 2.040009 AATATGAGACGTGCCCGGGG 62.040 60.000 25.28 9.31 38.78 5.73
385 386 0.179056 AAATATGAGACGTGCCCGGG 60.179 55.000 19.09 19.09 38.78 5.73
386 387 0.937304 CAAATATGAGACGTGCCCGG 59.063 55.000 0.00 0.00 38.78 5.73
387 388 0.937304 CCAAATATGAGACGTGCCCG 59.063 55.000 0.00 0.00 40.83 6.13
388 389 1.308998 CCCAAATATGAGACGTGCCC 58.691 55.000 0.00 0.00 0.00 5.36
389 390 1.670811 CACCCAAATATGAGACGTGCC 59.329 52.381 0.00 0.00 0.00 5.01
390 391 1.064060 GCACCCAAATATGAGACGTGC 59.936 52.381 0.00 0.00 38.43 5.34
391 392 2.095853 GTGCACCCAAATATGAGACGTG 59.904 50.000 5.22 0.00 0.00 4.49
392 393 2.356135 GTGCACCCAAATATGAGACGT 58.644 47.619 5.22 0.00 0.00 4.34
393 394 1.670811 GGTGCACCCAAATATGAGACG 59.329 52.381 26.31 0.00 0.00 4.18
394 395 1.670811 CGGTGCACCCAAATATGAGAC 59.329 52.381 29.95 0.31 0.00 3.36
395 396 2.016604 GCGGTGCACCCAAATATGAGA 61.017 52.381 29.95 0.00 0.00 3.27
396 397 0.381801 GCGGTGCACCCAAATATGAG 59.618 55.000 29.95 13.43 0.00 2.90
397 398 0.322906 TGCGGTGCACCCAAATATGA 60.323 50.000 29.95 2.14 31.71 2.15
398 399 0.746063 ATGCGGTGCACCCAAATATG 59.254 50.000 29.95 14.93 43.04 1.78
399 400 2.356665 TATGCGGTGCACCCAAATAT 57.643 45.000 29.95 17.78 43.04 1.28
400 401 2.356665 ATATGCGGTGCACCCAAATA 57.643 45.000 29.95 22.66 43.04 1.40
401 402 1.408702 GAATATGCGGTGCACCCAAAT 59.591 47.619 29.95 21.34 43.04 2.32
402 403 0.814457 GAATATGCGGTGCACCCAAA 59.186 50.000 29.95 15.88 43.04 3.28
403 404 0.034574 AGAATATGCGGTGCACCCAA 60.035 50.000 29.95 18.55 43.04 4.12
404 405 0.463654 GAGAATATGCGGTGCACCCA 60.464 55.000 29.95 26.41 43.04 4.51
405 406 1.166531 GGAGAATATGCGGTGCACCC 61.167 60.000 29.95 21.83 43.04 4.61
406 407 1.166531 GGGAGAATATGCGGTGCACC 61.167 60.000 26.78 26.78 43.04 5.01
407 408 0.179045 AGGGAGAATATGCGGTGCAC 60.179 55.000 8.80 8.80 43.04 4.57
408 409 1.344438 CTAGGGAGAATATGCGGTGCA 59.656 52.381 0.00 0.00 44.86 4.57
437 438 1.409661 GCTCCGACCCCACCAATTAAT 60.410 52.381 0.00 0.00 0.00 1.40
451 452 4.717629 CGCGGTTCACTGCTCCGA 62.718 66.667 9.07 0.00 46.05 4.55
476 482 2.799917 CGACCATGTCAGGTAAGCTAGC 60.800 54.545 6.62 6.62 43.38 3.42
480 486 2.380084 TTCGACCATGTCAGGTAAGC 57.620 50.000 0.00 0.00 43.38 3.09
486 492 6.380995 TCATTTTCATTTTCGACCATGTCAG 58.619 36.000 3.51 0.00 32.09 3.51
543 550 9.686683 AGTTGCTCTACCTATTATTGTCAAAAT 57.313 29.630 0.00 0.00 0.00 1.82
566 574 5.531122 TGCAAGTCTACACTAGTTCAGTT 57.469 39.130 0.00 0.00 34.26 3.16
567 575 4.559704 GCTGCAAGTCTACACTAGTTCAGT 60.560 45.833 0.00 0.00 34.73 3.41
568 576 3.923461 GCTGCAAGTCTACACTAGTTCAG 59.077 47.826 0.00 0.00 35.30 3.02
569 577 3.574396 AGCTGCAAGTCTACACTAGTTCA 59.426 43.478 1.02 0.00 35.30 3.18
570 578 3.923461 CAGCTGCAAGTCTACACTAGTTC 59.077 47.826 0.00 0.00 35.30 3.01
611 623 8.780846 GAGATCTCTATATCTCGGTAAACTCA 57.219 38.462 15.80 0.00 41.75 3.41
639 659 1.903183 TGTCCACCGTGGTTCATATCA 59.097 47.619 17.32 4.47 39.03 2.15
645 665 0.601841 ATTCGTGTCCACCGTGGTTC 60.602 55.000 17.32 11.94 39.03 3.62
655 675 3.554692 CGAGCGCCATTCGTGTCC 61.555 66.667 2.29 0.00 41.07 4.02
668 694 4.831307 ACGGTCACGATCGCGAGC 62.831 66.667 21.93 21.93 44.60 5.03
669 695 2.202440 AACGGTCACGATCGCGAG 60.202 61.111 16.66 4.02 44.60 5.03
670 696 2.191354 AAGAACGGTCACGATCGCGA 62.191 55.000 16.60 13.09 45.25 5.87
671 697 1.342082 AAAGAACGGTCACGATCGCG 61.342 55.000 16.60 13.13 45.25 5.87
865 898 2.703007 AGAGAGAGAGAGAGAGAGAGGC 59.297 54.545 0.00 0.00 0.00 4.70
869 902 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
870 903 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
871 904 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
872 905 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
873 906 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
909 1169 2.297597 CCCAATTAGAGAGAGGGTAGCG 59.702 54.545 0.00 0.00 34.75 4.26
932 1195 1.755179 TGGCTACTGGAGTACGTACC 58.245 55.000 21.80 13.02 0.00 3.34
950 1229 2.979130 GCTAGGTAGCCGCTTCTTG 58.021 57.895 0.00 0.00 43.39 3.02
953 1232 3.501007 AGCTTGCTAGGTAGCCGCTTC 62.501 57.143 13.95 0.00 46.10 3.86
954 1233 1.617947 AGCTTGCTAGGTAGCCGCTT 61.618 55.000 13.95 3.36 46.10 4.68
955 1234 4.986230 TCTAGCTTGCTAGGTAGCCGCT 62.986 54.545 23.92 20.10 47.00 5.52
956 1235 2.692520 TCTAGCTTGCTAGGTAGCCGC 61.693 57.143 23.92 8.94 47.00 6.53
957 1236 1.268352 CTCTAGCTTGCTAGGTAGCCG 59.732 57.143 23.92 15.57 47.00 5.52
958 1237 2.588620 TCTCTAGCTTGCTAGGTAGCC 58.411 52.381 23.92 0.00 47.00 3.93
959 1238 3.823873 TGATCTCTAGCTTGCTAGGTAGC 59.176 47.826 23.92 16.95 47.00 3.58
961 1240 3.823873 GCTGATCTCTAGCTTGCTAGGTA 59.176 47.826 24.11 15.27 38.14 3.08
962 1241 2.627699 GCTGATCTCTAGCTTGCTAGGT 59.372 50.000 24.11 13.66 38.14 3.08
963 1242 2.351641 CGCTGATCTCTAGCTTGCTAGG 60.352 54.545 24.11 16.61 39.00 3.02
969 1248 1.384525 ACGACGCTGATCTCTAGCTT 58.615 50.000 0.00 0.00 39.00 3.74
1044 1323 1.429825 CTGCTGCTGCTGCTGATTC 59.570 57.895 27.67 8.67 40.01 2.52
1054 1333 3.789858 CGTCTGCTGCTGCTGCTG 61.790 66.667 27.67 26.32 40.48 4.41
1082 1361 0.678950 GAGCATCCTGGAGTAGAGCC 59.321 60.000 1.52 0.00 0.00 4.70
1696 1995 6.640907 CGGGTATTTAGAAAATTAAGCATGCC 59.359 38.462 15.66 0.00 0.00 4.40
1697 1996 6.640907 CCGGGTATTTAGAAAATTAAGCATGC 59.359 38.462 10.51 10.51 0.00 4.06
1702 2001 6.604396 ACACCCCGGGTATTTAGAAAATTAAG 59.396 38.462 21.85 0.00 32.11 1.85
1783 2084 0.745486 CCTTGCCATGCATGACTCGA 60.745 55.000 28.31 14.24 38.76 4.04
1845 2146 6.919188 CGTATATACGGCTGCATATACAAAC 58.081 40.000 25.53 10.08 45.30 2.93
1993 2299 1.899814 ACTCGCAGGGAATGACAGTAA 59.100 47.619 0.00 0.00 0.00 2.24
2073 2626 9.651718 CATGCATGATTGATTATGAATAGATCG 57.348 33.333 22.59 0.00 0.00 3.69
2074 2627 9.952188 CCATGCATGATTGATTATGAATAGATC 57.048 33.333 28.31 0.00 0.00 2.75
2082 2635 5.134202 ACTGCCATGCATGATTGATTATG 57.866 39.130 28.31 8.75 38.13 1.90
2085 2638 3.955551 TGTACTGCCATGCATGATTGATT 59.044 39.130 28.31 9.17 38.13 2.57
2096 2649 2.159531 CGGTGTTCATTGTACTGCCATG 60.160 50.000 0.00 0.00 0.00 3.66
2097 2650 2.083774 CGGTGTTCATTGTACTGCCAT 58.916 47.619 0.00 0.00 0.00 4.40
2098 2651 1.070914 TCGGTGTTCATTGTACTGCCA 59.929 47.619 0.00 0.00 0.00 4.92
2099 2652 1.803334 TCGGTGTTCATTGTACTGCC 58.197 50.000 0.00 0.00 0.00 4.85
2100 2653 3.889196 TTTCGGTGTTCATTGTACTGC 57.111 42.857 0.00 0.00 0.00 4.40
2132 2685 2.608998 CGCTAGGTGGTCTGCATATCTG 60.609 54.545 0.00 0.00 0.00 2.90
2166 2719 2.034507 GTGCGTATTCGATTCACTCTGC 60.035 50.000 0.00 0.00 39.71 4.26
2183 2736 2.677003 GGGTGATGTCAACGGTGCG 61.677 63.158 0.00 0.00 33.46 5.34
2184 2737 2.332654 GGGGTGATGTCAACGGTGC 61.333 63.158 0.00 0.00 33.46 5.01
2190 2743 1.913419 GTAAGGGAGGGGTGATGTCAA 59.087 52.381 0.00 0.00 0.00 3.18
2194 2747 1.696097 CCGGTAAGGGAGGGGTGATG 61.696 65.000 0.00 0.00 35.97 3.07
2209 2762 0.743345 GTATTTTGCTCGGCTCCGGT 60.743 55.000 8.59 0.00 40.25 5.28
2212 2765 1.334869 CCATGTATTTTGCTCGGCTCC 59.665 52.381 0.00 0.00 0.00 4.70
2219 2772 5.488262 AAAAGGAAGCCATGTATTTTGCT 57.512 34.783 0.00 0.00 35.08 3.91
2436 3090 1.135489 TGATGACGCGTCTGTCCTAAC 60.135 52.381 36.27 16.59 38.11 2.34
2458 3112 9.720769 TCCCTAGTACTATGAAACTTTTTCTTG 57.279 33.333 2.33 0.00 0.00 3.02
2543 5494 2.158957 TGAAATCCATGGGACGAGCTAC 60.159 50.000 13.02 0.00 32.98 3.58
2652 5603 2.420129 CCGTTGGTTTCCCTATGGAGAG 60.420 54.545 0.00 0.00 43.17 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.