Multiple sequence alignment - TraesCS1D01G113100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G113100 chr1D 100.000 2963 0 0 668 3630 109478788 109475826 0.000000e+00 5472.0
1 TraesCS1D01G113100 chr1D 100.000 282 0 0 1 282 109479455 109479174 4.150000e-144 521.0
2 TraesCS1D01G113100 chr1D 82.803 157 24 3 2868 3023 468265417 468265263 1.760000e-28 137.0
3 TraesCS1D01G113100 chr1B 95.585 2061 58 16 945 2978 165077836 165075782 0.000000e+00 3271.0
4 TraesCS1D01G113100 chr1B 95.848 289 8 2 3087 3371 165075787 165075499 7.100000e-127 464.0
5 TraesCS1D01G113100 chr1B 97.719 263 6 0 3368 3630 165075458 165075196 1.540000e-123 453.0
6 TraesCS1D01G113100 chr1B 96.970 231 4 3 19 246 165078550 165078320 5.690000e-103 385.0
7 TraesCS1D01G113100 chr1B 81.935 155 26 2 2870 3023 646931258 646931105 2.940000e-26 130.0
8 TraesCS1D01G113100 chr1A 92.051 1346 67 16 668 1990 112944599 112943271 0.000000e+00 1857.0
9 TraesCS1D01G113100 chr1A 93.323 674 35 5 2159 2822 112943150 112942477 0.000000e+00 987.0
10 TraesCS1D01G113100 chr1A 86.604 642 35 16 3021 3630 112942476 112941854 0.000000e+00 662.0
11 TraesCS1D01G113100 chr1A 92.308 286 13 5 1 282 112944953 112944673 7.300000e-107 398.0
12 TraesCS1D01G113100 chr1A 81.132 159 19 9 2870 3023 561211924 561211772 2.290000e-22 117.0
13 TraesCS1D01G113100 chr3D 84.058 207 28 5 2226 2429 453630093 453630297 1.030000e-45 195.0
14 TraesCS1D01G113100 chr3D 87.162 148 19 0 1385 1532 453629845 453629992 6.230000e-38 169.0
15 TraesCS1D01G113100 chr3A 85.876 177 20 5 2252 2425 595644870 595645044 2.230000e-42 183.0
16 TraesCS1D01G113100 chr3A 87.162 148 19 0 1385 1532 595644596 595644743 6.230000e-38 169.0
17 TraesCS1D01G113100 chr3B 84.444 180 25 3 2252 2429 596048349 596048527 1.340000e-39 174.0
18 TraesCS1D01G113100 chr3B 87.162 148 19 0 1385 1532 596048076 596048223 6.230000e-38 169.0
19 TraesCS1D01G113100 chr5B 83.333 156 22 4 2870 3023 288327656 288327809 1.360000e-29 141.0
20 TraesCS1D01G113100 chr5A 83.226 155 23 3 2870 3023 335291437 335291589 4.890000e-29 139.0
21 TraesCS1D01G113100 chr5A 82.581 155 24 3 2870 3023 337822989 337822837 2.270000e-27 134.0
22 TraesCS1D01G113100 chr5A 84.058 69 2 7 17 77 504857298 504857231 1.410000e-04 58.4
23 TraesCS1D01G113100 chr5D 82.581 155 22 5 2878 3030 268529361 268529512 8.180000e-27 132.0
24 TraesCS1D01G113100 chr5D 100.000 36 0 0 9 44 531995613 531995648 2.340000e-07 67.6
25 TraesCS1D01G113100 chr5D 95.000 40 2 0 17 56 29493741 29493702 3.030000e-06 63.9
26 TraesCS1D01G113100 chr5D 94.872 39 2 0 4 42 556999579 556999541 1.090000e-05 62.1
27 TraesCS1D01G113100 chr6A 82.517 143 21 2 2887 3027 76520366 76520506 4.920000e-24 122.0
28 TraesCS1D01G113100 chr6A 95.122 41 2 0 9 49 255186907 255186867 8.410000e-07 65.8
29 TraesCS1D01G113100 chr4B 92.857 42 3 0 1 42 651906353 651906312 1.090000e-05 62.1
30 TraesCS1D01G113100 chr7A 91.111 45 3 1 17 61 620533421 620533464 3.910000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G113100 chr1D 109475826 109479455 3629 True 2996.50 5472 100.0000 1 3630 2 chr1D.!!$R2 3629
1 TraesCS1D01G113100 chr1B 165075196 165078550 3354 True 1143.25 3271 96.5305 19 3630 4 chr1B.!!$R2 3611
2 TraesCS1D01G113100 chr1A 112941854 112944953 3099 True 976.00 1857 91.0715 1 3630 4 chr1A.!!$R2 3629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 253 2.22633 GCGCCCATTGTGTCCAATATA 58.774 47.619 0.0 0.0 39.28 0.86 F
1450 1473 0.85353 AGTGCCCCTTCTCACCTTTT 59.146 50.000 0.0 0.0 33.90 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2236 1.278238 CCAAGCTACGCGTTAAGGAG 58.722 55.0 20.78 9.76 0.0 3.69 R
3005 3069 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.0 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 171 8.608844 AGTTAGTGGATGCTAATTAACTATGC 57.391 34.615 0.00 0.00 34.03 3.14
175 176 9.745018 AGTGGATGCTAATTAACTATGCAATAT 57.255 29.630 0.00 0.00 37.20 1.28
249 253 2.226330 GCGCCCATTGTGTCCAATATA 58.774 47.619 0.00 0.00 39.28 0.86
253 257 5.738783 GCGCCCATTGTGTCCAATATAAAAT 60.739 40.000 0.00 0.00 39.28 1.82
277 282 6.991938 TCCATTTTTCAAAACTCATACCCAG 58.008 36.000 0.00 0.00 0.00 4.45
725 730 5.588648 TGCACACACCTCTTATTAATTAGCC 59.411 40.000 0.00 0.00 0.00 3.93
729 734 4.141574 ACACCTCTTATTAATTAGCCGCCA 60.142 41.667 0.00 0.00 0.00 5.69
730 735 5.003804 CACCTCTTATTAATTAGCCGCCAT 58.996 41.667 0.00 0.00 0.00 4.40
766 771 5.755409 ACAAGTCAACATACACCAGGATA 57.245 39.130 0.00 0.00 0.00 2.59
784 789 3.706086 GGATACCTTCCAAATGGTGCAAT 59.294 43.478 0.00 0.00 44.74 3.56
814 819 8.926092 ACATACATCTAGCAGTACAATCTCTA 57.074 34.615 0.00 0.00 0.00 2.43
887 893 5.965033 ACATCTCTCTCTCTCTCTCTCTT 57.035 43.478 0.00 0.00 0.00 2.85
888 894 5.923204 ACATCTCTCTCTCTCTCTCTCTTC 58.077 45.833 0.00 0.00 0.00 2.87
889 895 5.664908 ACATCTCTCTCTCTCTCTCTCTTCT 59.335 44.000 0.00 0.00 0.00 2.85
890 896 5.860941 TCTCTCTCTCTCTCTCTCTTCTC 57.139 47.826 0.00 0.00 0.00 2.87
891 897 5.523588 TCTCTCTCTCTCTCTCTCTTCTCT 58.476 45.833 0.00 0.00 0.00 3.10
892 898 5.596361 TCTCTCTCTCTCTCTCTCTTCTCTC 59.404 48.000 0.00 0.00 0.00 3.20
893 899 5.523588 TCTCTCTCTCTCTCTCTTCTCTCT 58.476 45.833 0.00 0.00 0.00 3.10
907 913 6.385176 TCTCTTCTCTCTTCTCTCTCTCTCAT 59.615 42.308 0.00 0.00 0.00 2.90
915 937 8.271458 TCTCTTCTCTCTCTCTCATAAGCTAAA 58.729 37.037 0.00 0.00 0.00 1.85
923 945 3.782046 TCTCATAAGCTAAACGGCAGAC 58.218 45.455 0.00 0.00 34.17 3.51
1053 1075 6.812879 AAACTACTTTCCGAAATACCAAGG 57.187 37.500 0.00 0.00 0.00 3.61
1285 1308 4.382577 GGGAAGAAGATCAAGAGTGAGTCC 60.383 50.000 0.00 0.00 37.14 3.85
1315 1338 4.545706 GACCGGATGATGGCGGCA 62.546 66.667 16.34 16.34 0.00 5.69
1363 1386 3.458163 GGCGTCGGACCAGGATCA 61.458 66.667 1.91 0.00 0.00 2.92
1444 1467 2.596851 GCAGGAGTGCCCCTTCTCA 61.597 63.158 0.00 0.00 44.72 3.27
1450 1473 0.853530 AGTGCCCCTTCTCACCTTTT 59.146 50.000 0.00 0.00 33.90 2.27
1568 1591 0.975887 TTCCCTCCATTTTGCTTGCC 59.024 50.000 0.00 0.00 0.00 4.52
1637 1663 1.336440 TGAACTGGTTTTGTGCCGATG 59.664 47.619 0.00 0.00 0.00 3.84
1960 1989 8.470040 AACAACAGTGTATAAATAGTGTACGG 57.530 34.615 0.00 0.00 36.80 4.02
2022 2058 5.185635 TCCCCAAATCAAGTTAGCTCAAATG 59.814 40.000 0.00 0.00 0.00 2.32
2058 2095 6.831727 TGTGCATCTTTTGTTTCATTTCTG 57.168 33.333 0.00 0.00 0.00 3.02
2119 2161 6.375455 TCAGTTAGCTCAAATCCTTCCAAATC 59.625 38.462 0.00 0.00 0.00 2.17
2173 2216 2.925724 TCCACACAAGTTGAACCGATT 58.074 42.857 10.54 0.00 0.00 3.34
2193 2236 4.689612 TTGAAGTGCTCCAGGGATATAC 57.310 45.455 0.00 0.00 0.00 1.47
2233 2287 2.125147 GCGTGCATGCAGGAGGTA 60.125 61.111 37.16 6.02 34.13 3.08
2605 2665 0.108615 ACTACAGCTCCATCACGCAC 60.109 55.000 0.00 0.00 0.00 5.34
2726 2788 2.915463 CACGTAGTAGACCTTGCGAAAG 59.085 50.000 0.00 0.00 41.61 2.62
2783 2845 2.897326 GCTTTAATTTGTGTCCAGGGGT 59.103 45.455 0.00 0.00 0.00 4.95
2847 2909 7.402640 CGAGCAAAATTATACTCCAGAAAGAC 58.597 38.462 0.00 0.00 0.00 3.01
2882 2944 5.595952 TCCTACCTAATTACTCCTTCCGTTC 59.404 44.000 0.00 0.00 0.00 3.95
2950 3014 5.120208 AGACATGCGTTATAGTGTGTTTGTC 59.880 40.000 0.00 0.00 0.00 3.18
2970 3034 6.850752 TGTCCACTCATTTCAGTCTGTATA 57.149 37.500 0.00 0.00 0.00 1.47
2975 3039 9.201989 TCCACTCATTTCAGTCTGTATATAGTT 57.798 33.333 0.00 0.00 0.00 2.24
2976 3040 9.469807 CCACTCATTTCAGTCTGTATATAGTTC 57.530 37.037 0.00 0.00 0.00 3.01
3042 3106 8.831550 GGGAGTAGTAATTTCTAAATTGCTCTG 58.168 37.037 18.17 0.00 44.45 3.35
3057 3121 4.365514 TGCTCTGATTTCCAAAGGTGTA 57.634 40.909 0.00 0.00 0.00 2.90
3066 3130 6.262273 TGATTTCCAAAGGTGTACAAGTCTTC 59.738 38.462 0.00 0.00 0.00 2.87
3068 3132 3.385433 TCCAAAGGTGTACAAGTCTTCGA 59.615 43.478 0.00 0.00 0.00 3.71
3081 3145 1.264288 GTCTTCGAAACACAAGCCCTG 59.736 52.381 0.00 0.00 0.00 4.45
3117 3181 2.224548 GCATAGGAATAGGGGTGTCACC 60.225 54.545 14.13 14.13 37.60 4.02
3335 3403 7.105588 TCCCCATACATCGATTGATTTGATAG 58.894 38.462 0.00 0.00 30.49 2.08
3356 3424 9.839817 TGATAGTAGTGATAGATCCATACTAGC 57.160 37.037 13.95 13.95 36.86 3.42
3408 3520 3.821421 ATGGCAAGGTAGTACTACTGC 57.179 47.619 27.19 27.19 36.85 4.40
3567 3679 5.913137 AATAAGAAACAATCCGGCAATCA 57.087 34.783 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.553064 CCCATAATATAAGATGTCATTAGAGCC 57.447 37.037 0.00 0.00 0.00 4.70
12 13 6.407074 CCCTCCGTCCCATAATATAAGATGTC 60.407 46.154 0.00 0.00 0.00 3.06
115 116 7.692460 ATGCATCACAAATTCTCTTTGAGTA 57.308 32.000 0.00 0.00 33.83 2.59
175 176 9.571810 CTTGCATTACATAGCTATTTTTGTGAA 57.428 29.630 2.64 0.00 0.00 3.18
178 179 9.927668 AAACTTGCATTACATAGCTATTTTTGT 57.072 25.926 2.64 3.08 0.00 2.83
249 253 9.283768 GGGTATGAGTTTTGAAAAATGGATTTT 57.716 29.630 0.00 0.00 43.85 1.82
253 257 6.553100 ACTGGGTATGAGTTTTGAAAAATGGA 59.447 34.615 0.00 0.00 0.00 3.41
690 695 1.396996 GGTGTGTGCATACGGAATGAC 59.603 52.381 9.18 0.25 37.86 3.06
725 730 6.494842 ACTTGTTGCAATAGTTAATATGGCG 58.505 36.000 0.59 0.00 42.98 5.69
784 789 8.935614 ATTGTACTGCTAGATGTATGTAGGTA 57.064 34.615 0.00 0.00 0.00 3.08
814 819 6.282930 ACAAAAATAAGTTTGCTGCTGTCAT 58.717 32.000 0.00 0.00 41.33 3.06
887 893 6.100279 AGCTTATGAGAGAGAGAGAAGAGAGA 59.900 42.308 0.00 0.00 0.00 3.10
888 894 6.294473 AGCTTATGAGAGAGAGAGAAGAGAG 58.706 44.000 0.00 0.00 0.00 3.20
889 895 6.252599 AGCTTATGAGAGAGAGAGAAGAGA 57.747 41.667 0.00 0.00 0.00 3.10
890 896 8.345565 GTTTAGCTTATGAGAGAGAGAGAAGAG 58.654 40.741 0.00 0.00 0.00 2.85
891 897 7.011950 CGTTTAGCTTATGAGAGAGAGAGAAGA 59.988 40.741 0.00 0.00 0.00 2.87
892 898 7.132213 CGTTTAGCTTATGAGAGAGAGAGAAG 58.868 42.308 0.00 0.00 0.00 2.85
893 899 6.038825 CCGTTTAGCTTATGAGAGAGAGAGAA 59.961 42.308 0.00 0.00 0.00 2.87
907 913 2.224090 TGTGTGTCTGCCGTTTAGCTTA 60.224 45.455 0.00 0.00 0.00 3.09
915 937 1.817941 GGTTGTGTGTGTCTGCCGT 60.818 57.895 0.00 0.00 0.00 5.68
923 945 4.060038 AGTGTCTTCTAGGTTGTGTGTG 57.940 45.455 0.00 0.00 0.00 3.82
1152 1175 3.495331 ACTAATTCCATTGCCACACACA 58.505 40.909 0.00 0.00 0.00 3.72
1153 1176 4.236935 CAACTAATTCCATTGCCACACAC 58.763 43.478 0.00 0.00 0.00 3.82
1315 1338 2.716017 GCTGCTACTCCTCCGTGCT 61.716 63.158 0.00 0.00 0.00 4.40
1350 1373 1.884075 CGGTGTTGATCCTGGTCCGA 61.884 60.000 7.38 0.00 38.96 4.55
1450 1473 2.494918 GGCTCTAGCGGCGAGAAA 59.505 61.111 12.98 0.00 43.26 2.52
1568 1591 5.645497 AGTAAGCTATGCTGAAAGTCAAAGG 59.355 40.000 0.00 0.00 39.62 3.11
1960 1989 1.691434 TGGATTTTGGGAGGCAAACAC 59.309 47.619 0.00 0.00 0.00 3.32
2022 2058 4.503741 AGATGCACAAACATTGTACACC 57.496 40.909 0.00 0.00 43.23 4.16
2067 2104 7.489435 TGAAGTCACGCATCTCTCTTTAAATAG 59.511 37.037 0.00 0.00 0.00 1.73
2119 2161 6.811665 TCATACGGATAGTTCAACTCAACTTG 59.188 38.462 0.00 0.00 37.75 3.16
2173 2216 3.898123 GAGTATATCCCTGGAGCACTTCA 59.102 47.826 0.00 0.00 0.00 3.02
2193 2236 1.278238 CCAAGCTACGCGTTAAGGAG 58.722 55.000 20.78 9.76 0.00 3.69
2534 2594 3.884581 TTGACGACGACGCGGAAGG 62.885 63.158 12.47 0.00 43.96 3.46
2721 2783 4.504858 AGCCTGTTATTCCAGTACTTTCG 58.495 43.478 0.00 0.00 0.00 3.46
2726 2788 6.349363 CCAGAAAAAGCCTGTTATTCCAGTAC 60.349 42.308 0.00 0.00 0.00 2.73
2783 2845 8.830201 ACTATAAAATTTTGCTTGCATGAACA 57.170 26.923 13.76 0.00 0.00 3.18
2867 2929 8.636213 TCTTATAATTCGAACGGAAGGAGTAAT 58.364 33.333 0.00 0.00 38.24 1.89
2918 2982 8.023706 CACACTATAACGCATGTCTATACATCT 58.976 37.037 0.00 0.00 44.70 2.90
2931 2995 3.495377 GTGGACAAACACACTATAACGCA 59.505 43.478 0.00 0.00 40.99 5.24
2942 3006 4.576463 AGACTGAAATGAGTGGACAAACAC 59.424 41.667 0.00 0.00 41.63 3.32
2950 3014 9.469807 GAACTATATACAGACTGAAATGAGTGG 57.530 37.037 10.08 0.00 0.00 4.00
2987 3051 9.716507 CGTTCCGAATTATAAGATGTTTTGAAT 57.283 29.630 0.00 0.00 0.00 2.57
2988 3052 8.178964 CCGTTCCGAATTATAAGATGTTTTGAA 58.821 33.333 0.00 0.00 0.00 2.69
2989 3053 7.549842 TCCGTTCCGAATTATAAGATGTTTTGA 59.450 33.333 0.00 0.00 0.00 2.69
2990 3054 7.690228 TCCGTTCCGAATTATAAGATGTTTTG 58.310 34.615 0.00 0.00 0.00 2.44
2991 3055 7.012044 CCTCCGTTCCGAATTATAAGATGTTTT 59.988 37.037 0.00 0.00 0.00 2.43
2992 3056 6.482308 CCTCCGTTCCGAATTATAAGATGTTT 59.518 38.462 0.00 0.00 0.00 2.83
2993 3057 5.989777 CCTCCGTTCCGAATTATAAGATGTT 59.010 40.000 0.00 0.00 0.00 2.71
2994 3058 5.510861 CCCTCCGTTCCGAATTATAAGATGT 60.511 44.000 0.00 0.00 0.00 3.06
2995 3059 4.929808 CCCTCCGTTCCGAATTATAAGATG 59.070 45.833 0.00 0.00 0.00 2.90
2996 3060 4.836736 TCCCTCCGTTCCGAATTATAAGAT 59.163 41.667 0.00 0.00 0.00 2.40
2997 3061 4.217510 TCCCTCCGTTCCGAATTATAAGA 58.782 43.478 0.00 0.00 0.00 2.10
2998 3062 4.038883 ACTCCCTCCGTTCCGAATTATAAG 59.961 45.833 0.00 0.00 0.00 1.73
2999 3063 3.962718 ACTCCCTCCGTTCCGAATTATAA 59.037 43.478 0.00 0.00 0.00 0.98
3000 3064 3.569491 ACTCCCTCCGTTCCGAATTATA 58.431 45.455 0.00 0.00 0.00 0.98
3001 3065 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
3002 3066 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3003 3067 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
3004 3068 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
3005 3069 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3006 3070 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
3007 3071 1.755179 TTACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
3008 3072 4.405036 AGAAATTACTACTCCCTCCGTTCC 59.595 45.833 0.00 0.00 0.00 3.62
3009 3073 5.595257 AGAAATTACTACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
3010 3074 7.486407 TTTAGAAATTACTACTCCCTCCGTT 57.514 36.000 0.00 0.00 0.00 4.44
3011 3075 7.672122 ATTTAGAAATTACTACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
3012 3076 7.041984 GCAATTTAGAAATTACTACTCCCTCCG 60.042 40.741 0.05 0.00 36.52 4.63
3013 3077 7.993758 AGCAATTTAGAAATTACTACTCCCTCC 59.006 37.037 0.05 0.00 36.52 4.30
3014 3078 8.966069 AGCAATTTAGAAATTACTACTCCCTC 57.034 34.615 0.05 0.00 36.52 4.30
3015 3079 8.773216 AGAGCAATTTAGAAATTACTACTCCCT 58.227 33.333 0.05 0.00 36.52 4.20
3016 3080 8.831550 CAGAGCAATTTAGAAATTACTACTCCC 58.168 37.037 0.05 0.00 36.52 4.30
3017 3081 9.601217 TCAGAGCAATTTAGAAATTACTACTCC 57.399 33.333 0.05 0.00 36.52 3.85
3042 3106 6.565999 CGAAGACTTGTACACCTTTGGAAATC 60.566 42.308 0.00 0.00 0.00 2.17
3047 3111 3.724374 TCGAAGACTTGTACACCTTTGG 58.276 45.455 14.36 7.68 0.00 3.28
3049 3113 5.064325 GTGTTTCGAAGACTTGTACACCTTT 59.936 40.000 13.52 0.00 34.32 3.11
3057 3121 2.354821 GGCTTGTGTTTCGAAGACTTGT 59.645 45.455 0.00 0.00 34.32 3.16
3066 3130 2.644992 GCCAGGGCTTGTGTTTCG 59.355 61.111 2.30 0.00 38.26 3.46
3081 3145 2.012673 CTATGCTTGTTGGACTCAGCC 58.987 52.381 0.00 0.00 0.00 4.85
3084 3148 4.574674 ATTCCTATGCTTGTTGGACTCA 57.425 40.909 0.00 0.00 0.00 3.41
3117 3181 2.029828 GGAGTAGGGAGTATCATGTGCG 60.030 54.545 0.00 0.00 36.25 5.34
3335 3403 7.795482 ATCGCTAGTATGGATCTATCACTAC 57.205 40.000 0.00 0.00 0.00 2.73
3348 3416 9.444534 CTGCTGTTCTTATATATCGCTAGTATG 57.555 37.037 0.00 0.00 0.00 2.39
3356 3424 4.559251 GGACGCTGCTGTTCTTATATATCG 59.441 45.833 0.00 0.00 0.00 2.92
3408 3520 0.250467 CAGTTGTGGACAGGGGAGTG 60.250 60.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.