Multiple sequence alignment - TraesCS1D01G113000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G113000 chr1D 100.000 4957 0 0 1 4957 109471601 109476557 0.000000e+00 9154.0
1 TraesCS1D01G113000 chr1D 83.944 928 100 28 2641 3561 109473332 109474217 0.000000e+00 843.0
2 TraesCS1D01G113000 chr1D 83.944 928 100 28 1732 2617 109474241 109475161 0.000000e+00 843.0
3 TraesCS1D01G113000 chr1D 84.685 111 13 2 4833 4941 468265263 468265371 1.890000e-19 108.0
4 TraesCS1D01G113000 chr1B 97.008 4445 91 17 71 4488 165071029 165075458 0.000000e+00 7433.0
5 TraesCS1D01G113000 chr1B 84.056 922 96 29 2650 3563 165072703 165073581 0.000000e+00 841.0
6 TraesCS1D01G113000 chr1B 87.179 585 68 6 1732 2312 165073603 165074184 0.000000e+00 658.0
7 TraesCS1D01G113000 chr1B 95.848 289 8 2 4485 4769 165075499 165075787 9.720000e-127 464.0
8 TraesCS1D01G113000 chr1B 94.382 89 4 1 1 89 165070672 165070759 8.660000e-28 135.0
9 TraesCS1D01G113000 chr1A 94.942 3302 116 19 1 3276 112934730 112938006 0.000000e+00 5125.0
10 TraesCS1D01G113000 chr1A 89.467 1576 88 27 3313 4835 112940926 112942476 0.000000e+00 1919.0
11 TraesCS1D01G113000 chr1A 83.605 921 102 26 2650 3563 112936468 112937346 0.000000e+00 819.0
12 TraesCS1D01G113000 chr1A 88.287 572 55 9 1741 2308 112937377 112937940 0.000000e+00 675.0
13 TraesCS1D01G113000 chr1A 87.625 299 29 7 2348 2640 112940904 112941200 1.710000e-89 340.0
14 TraesCS1D01G113000 chr1A 92.857 56 0 1 3260 3311 112940841 112940896 1.480000e-10 78.7
15 TraesCS1D01G113000 chr5B 85.833 120 15 2 4833 4951 288327809 288327691 5.210000e-25 126.0
16 TraesCS1D01G113000 chr4B 85.593 118 16 1 4833 4950 71346194 71346310 6.740000e-24 122.0
17 TraesCS1D01G113000 chr5A 84.874 119 17 1 4833 4951 337822837 337822954 8.720000e-23 119.0
18 TraesCS1D01G113000 chr5A 84.034 119 18 1 4833 4951 335291589 335291472 4.060000e-21 113.0
19 TraesCS1D01G113000 chr5A 94.595 37 0 2 14 50 514433749 514433783 6.930000e-04 56.5
20 TraesCS1D01G113000 chr5D 83.465 127 18 3 4826 4951 268529512 268529388 1.130000e-21 115.0
21 TraesCS1D01G113000 chr5D 83.193 119 19 1 4833 4951 254521514 254521631 1.890000e-19 108.0
22 TraesCS1D01G113000 chr6A 85.849 106 15 0 4829 4934 76520506 76520401 4.060000e-21 113.0
23 TraesCS1D01G113000 chr7A 81.148 122 23 0 4833 4954 625738506 625738627 1.140000e-16 99.0
24 TraesCS1D01G113000 chr2D 90.196 51 2 3 1 49 562338609 562338560 4.140000e-06 63.9
25 TraesCS1D01G113000 chr2A 90.196 51 2 2 1 49 702942576 702942527 4.140000e-06 63.9
26 TraesCS1D01G113000 chrUn 92.500 40 2 1 12 50 297343200 297343239 6.930000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G113000 chr1D 109471601 109476557 4956 False 3613.333333 9154 89.296000 1 4957 3 chr1D.!!$F2 4956
1 TraesCS1D01G113000 chr1B 165070672 165075787 5115 False 1906.200000 7433 91.694600 1 4769 5 chr1B.!!$F1 4768
2 TraesCS1D01G113000 chr1A 112934730 112942476 7746 False 1492.783333 5125 89.463833 1 4835 6 chr1A.!!$F1 4834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 761 0.035439 TCGGGAGTTTGGATCTTGGC 60.035 55.000 0.0 0.0 0.00 4.52 F
973 1264 0.405585 ACCTTGGTGCCTAATGCTGT 59.594 50.000 0.0 0.0 42.00 4.40 F
2086 2391 3.883830 TGCATTCGCCACCAATTATTT 57.116 38.095 0.0 0.0 37.32 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2737 2.472695 AGCAAGGAGTTCATAACGCA 57.527 45.000 0.00 0.0 36.23 5.24 R
2735 3040 3.536956 TGTATTTCTAGCTGAACCCCG 57.463 47.619 0.00 0.0 33.88 5.73 R
4069 7284 0.254178 AATCTGCAGGCGTTCATCCT 59.746 50.000 15.13 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 6.773638 ACAGCCTATTTAGGTCATCCTATTG 58.226 40.000 5.56 0.00 44.68 1.90
117 403 7.536895 TTGCTAGTTAGAGTACTTCGTAGAG 57.463 40.000 0.00 0.00 38.43 2.43
128 414 2.168728 ACTTCGTAGAGAGGGGAAATGC 59.831 50.000 0.00 0.00 38.43 3.56
129 415 2.160721 TCGTAGAGAGGGGAAATGCT 57.839 50.000 0.00 0.00 0.00 3.79
410 700 2.269241 GAGGCCCTGACCTTTCCG 59.731 66.667 0.00 0.00 41.32 4.30
422 712 2.047655 TTTCCGTCCGCGCTGAAT 60.048 55.556 5.56 0.00 36.67 2.57
471 761 0.035439 TCGGGAGTTTGGATCTTGGC 60.035 55.000 0.00 0.00 0.00 4.52
657 948 5.545658 TTTGATCTAGGAATTGTTGCGTC 57.454 39.130 0.00 0.00 0.00 5.19
746 1037 3.948196 GCAAATTGCACACAACAACAT 57.052 38.095 13.73 0.00 44.26 2.71
973 1264 0.405585 ACCTTGGTGCCTAATGCTGT 59.594 50.000 0.00 0.00 42.00 4.40
991 1282 6.366315 TGCTGTAGTTGTTTGTTTAATCGT 57.634 33.333 0.00 0.00 0.00 3.73
1198 1501 9.178758 GAAAGGTAAATCACTACCAGAAATCAT 57.821 33.333 2.81 0.00 43.42 2.45
1323 1627 9.461312 AGCTTTAAGATGTCCAATTGTGTATTA 57.539 29.630 4.43 0.00 0.00 0.98
1732 2036 4.694982 CGCACCAGCATATGATAACCATTA 59.305 41.667 6.97 0.00 42.27 1.90
1940 2244 4.253685 CCCATTCTTGTCACAATCGTACT 58.746 43.478 0.00 0.00 0.00 2.73
2015 2319 4.755266 ATCTTACATGTGGGTGTAGGAC 57.245 45.455 9.11 0.00 41.52 3.85
2086 2391 3.883830 TGCATTCGCCACCAATTATTT 57.116 38.095 0.00 0.00 37.32 1.40
2222 2527 5.941555 TGTTGTAGGGGTGATTTGTTTTT 57.058 34.783 0.00 0.00 0.00 1.94
2328 2633 8.958119 TCATATAGGACTAACAATTTGGTGAC 57.042 34.615 0.00 0.00 0.00 3.67
2432 2737 6.697019 GCAGTGATGTCTATGTTTTTGTTTGT 59.303 34.615 0.00 0.00 0.00 2.83
2671 2976 5.106555 CGATGCTGAAAAAGGTATCAACAGT 60.107 40.000 0.00 0.00 0.00 3.55
2735 3040 5.177696 GTCGGTAGTGATAATGCCATCTTTC 59.822 44.000 0.00 0.00 0.00 2.62
3039 3344 1.375523 GGGGACTTGTACCTGCGTG 60.376 63.158 1.65 0.00 0.00 5.34
3053 3358 0.108186 TGCGTGCTTATCTGAGTGGG 60.108 55.000 0.00 0.00 0.00 4.61
3071 3376 5.024118 AGTGGGTATAAGTAGACTGCTGTT 58.976 41.667 0.00 0.00 0.00 3.16
3244 3556 4.282195 GGTAGAGTATGCTGTAGGCTCAAT 59.718 45.833 0.00 0.00 42.39 2.57
3453 6651 6.473397 AAGACTTAAGATTCAAGCGAACTG 57.527 37.500 10.09 0.00 32.81 3.16
3458 6656 8.723942 ACTTAAGATTCAAGCGAACTGAATAT 57.276 30.769 10.09 2.58 33.05 1.28
3532 6730 3.045634 TCAAGGGTTTTGTCTCAGAGGA 58.954 45.455 0.00 0.00 0.00 3.71
4446 7661 0.250467 CAGTTGTGGACAGGGGAGTG 60.250 60.000 0.00 0.00 0.00 3.51
4498 7757 4.559251 GGACGCTGCTGTTCTTATATATCG 59.441 45.833 0.00 0.00 0.00 2.92
4506 7765 9.444534 CTGCTGTTCTTATATATCGCTAGTATG 57.555 37.037 0.00 0.00 0.00 2.39
4519 7778 7.795482 ATCGCTAGTATGGATCTATCACTAC 57.205 40.000 0.00 0.00 0.00 2.73
4737 8000 2.029828 GGAGTAGGGAGTATCATGTGCG 60.030 54.545 0.00 0.00 36.25 5.34
4770 8033 4.574674 ATTCCTATGCTTGTTGGACTCA 57.425 40.909 0.00 0.00 0.00 3.41
4773 8036 2.012673 CTATGCTTGTTGGACTCAGCC 58.987 52.381 0.00 0.00 0.00 4.85
4788 8051 2.644992 GCCAGGGCTTGTGTTTCG 59.355 61.111 2.30 0.00 38.26 3.46
4797 8060 2.354821 GGCTTGTGTTTCGAAGACTTGT 59.645 45.455 0.00 0.00 34.32 3.16
4805 8068 5.064325 GTGTTTCGAAGACTTGTACACCTTT 59.936 40.000 13.52 0.00 34.32 3.11
4807 8070 3.724374 TCGAAGACTTGTACACCTTTGG 58.276 45.455 14.36 7.68 0.00 3.28
4812 8075 6.565999 CGAAGACTTGTACACCTTTGGAAATC 60.566 42.308 0.00 0.00 0.00 2.17
4837 8100 9.601217 TCAGAGCAATTTAGAAATTACTACTCC 57.399 33.333 0.05 0.00 36.52 3.85
4838 8101 8.831550 CAGAGCAATTTAGAAATTACTACTCCC 58.168 37.037 0.05 0.00 36.52 4.30
4839 8102 8.773216 AGAGCAATTTAGAAATTACTACTCCCT 58.227 33.333 0.05 0.00 36.52 4.20
4840 8103 8.966069 AGCAATTTAGAAATTACTACTCCCTC 57.034 34.615 0.05 0.00 36.52 4.30
4841 8104 7.993758 AGCAATTTAGAAATTACTACTCCCTCC 59.006 37.037 0.05 0.00 36.52 4.30
4842 8105 7.041984 GCAATTTAGAAATTACTACTCCCTCCG 60.042 40.741 0.05 0.00 36.52 4.63
4843 8106 7.672122 ATTTAGAAATTACTACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
4844 8107 7.486407 TTTAGAAATTACTACTCCCTCCGTT 57.514 36.000 0.00 0.00 0.00 4.44
4845 8108 5.595257 AGAAATTACTACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
4846 8109 4.405036 AGAAATTACTACTCCCTCCGTTCC 59.595 45.833 0.00 0.00 0.00 3.62
4847 8110 1.755179 TTACTACTCCCTCCGTTCCG 58.245 55.000 0.00 0.00 0.00 4.30
4848 8111 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
4849 8112 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
4850 8113 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
4851 8114 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
4852 8115 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4853 8116 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
4854 8117 3.569491 ACTCCCTCCGTTCCGAATTATA 58.431 45.455 0.00 0.00 0.00 0.98
4855 8118 3.962718 ACTCCCTCCGTTCCGAATTATAA 59.037 43.478 0.00 0.00 0.00 0.98
4856 8119 4.038883 ACTCCCTCCGTTCCGAATTATAAG 59.961 45.833 0.00 0.00 0.00 1.73
4857 8120 4.217510 TCCCTCCGTTCCGAATTATAAGA 58.782 43.478 0.00 0.00 0.00 2.10
4858 8121 4.836736 TCCCTCCGTTCCGAATTATAAGAT 59.163 41.667 0.00 0.00 0.00 2.40
4859 8122 4.929808 CCCTCCGTTCCGAATTATAAGATG 59.070 45.833 0.00 0.00 0.00 2.90
4860 8123 5.510861 CCCTCCGTTCCGAATTATAAGATGT 60.511 44.000 0.00 0.00 0.00 3.06
4861 8124 5.989777 CCTCCGTTCCGAATTATAAGATGTT 59.010 40.000 0.00 0.00 0.00 2.71
4862 8125 6.482308 CCTCCGTTCCGAATTATAAGATGTTT 59.518 38.462 0.00 0.00 0.00 2.83
4863 8126 7.012044 CCTCCGTTCCGAATTATAAGATGTTTT 59.988 37.037 0.00 0.00 0.00 2.43
4864 8127 7.690228 TCCGTTCCGAATTATAAGATGTTTTG 58.310 34.615 0.00 0.00 0.00 2.44
4865 8128 7.549842 TCCGTTCCGAATTATAAGATGTTTTGA 59.450 33.333 0.00 0.00 0.00 2.69
4866 8129 8.178964 CCGTTCCGAATTATAAGATGTTTTGAA 58.821 33.333 0.00 0.00 0.00 2.69
4867 8130 9.716507 CGTTCCGAATTATAAGATGTTTTGAAT 57.283 29.630 0.00 0.00 0.00 2.57
4904 8167 9.469807 GAACTATATACAGACTGAAATGAGTGG 57.530 37.037 10.08 0.00 0.00 4.00
4905 8168 8.768501 ACTATATACAGACTGAAATGAGTGGA 57.231 34.615 10.08 0.00 0.00 4.02
4906 8169 8.634444 ACTATATACAGACTGAAATGAGTGGAC 58.366 37.037 10.08 0.00 0.00 4.02
4907 8170 5.745312 ATACAGACTGAAATGAGTGGACA 57.255 39.130 10.08 0.00 0.00 4.02
4908 8171 4.422073 ACAGACTGAAATGAGTGGACAA 57.578 40.909 10.08 0.00 0.00 3.18
4909 8172 4.780815 ACAGACTGAAATGAGTGGACAAA 58.219 39.130 10.08 0.00 0.00 2.83
4910 8173 4.576463 ACAGACTGAAATGAGTGGACAAAC 59.424 41.667 10.08 0.00 0.00 2.93
4911 8174 4.576053 CAGACTGAAATGAGTGGACAAACA 59.424 41.667 0.00 0.00 0.00 2.83
4912 8175 4.576463 AGACTGAAATGAGTGGACAAACAC 59.424 41.667 0.00 0.00 41.63 3.32
4913 8176 4.269183 ACTGAAATGAGTGGACAAACACA 58.731 39.130 0.00 0.00 43.72 3.72
4914 8177 4.096382 ACTGAAATGAGTGGACAAACACAC 59.904 41.667 0.00 0.00 43.72 3.82
4922 8185 3.744426 AGTGGACAAACACACTATAACGC 59.256 43.478 0.00 0.00 45.45 4.84
4923 8186 3.495377 GTGGACAAACACACTATAACGCA 59.505 43.478 0.00 0.00 40.99 5.24
4924 8187 4.153475 GTGGACAAACACACTATAACGCAT 59.847 41.667 0.00 0.00 40.99 4.73
4925 8188 4.153296 TGGACAAACACACTATAACGCATG 59.847 41.667 0.00 0.00 0.00 4.06
4926 8189 4.153475 GGACAAACACACTATAACGCATGT 59.847 41.667 0.00 0.00 0.00 3.21
4927 8190 5.277601 ACAAACACACTATAACGCATGTC 57.722 39.130 0.00 0.00 0.00 3.06
4928 8191 4.994852 ACAAACACACTATAACGCATGTCT 59.005 37.500 0.00 0.00 0.00 3.41
4929 8192 6.160684 ACAAACACACTATAACGCATGTCTA 58.839 36.000 0.00 0.00 0.00 2.59
4930 8193 6.816640 ACAAACACACTATAACGCATGTCTAT 59.183 34.615 0.00 0.00 0.00 1.98
4931 8194 7.977293 ACAAACACACTATAACGCATGTCTATA 59.023 33.333 0.00 0.00 0.00 1.31
4932 8195 7.925703 AACACACTATAACGCATGTCTATAC 57.074 36.000 0.00 0.00 0.00 1.47
4933 8196 7.034685 ACACACTATAACGCATGTCTATACA 57.965 36.000 0.00 0.00 40.69 2.29
4935 8198 7.808381 ACACACTATAACGCATGTCTATACATC 59.192 37.037 0.00 0.00 44.70 3.06
4936 8199 8.023706 CACACTATAACGCATGTCTATACATCT 58.976 37.037 0.00 0.00 44.70 2.90
4937 8200 9.227777 ACACTATAACGCATGTCTATACATCTA 57.772 33.333 0.00 0.00 44.70 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 426 2.760477 CCGGACCACCATTTCCCA 59.240 61.111 0.00 0.00 35.59 4.37
246 536 0.181587 TTGGGCTTCTCCACGTGAAA 59.818 50.000 19.30 7.44 36.38 2.69
290 580 4.407365 CAGAGTTAGGATTTGGTTGGGTT 58.593 43.478 0.00 0.00 0.00 4.11
292 582 2.755103 GCAGAGTTAGGATTTGGTTGGG 59.245 50.000 0.00 0.00 0.00 4.12
293 583 3.420893 TGCAGAGTTAGGATTTGGTTGG 58.579 45.455 0.00 0.00 0.00 3.77
294 584 4.520492 AGTTGCAGAGTTAGGATTTGGTTG 59.480 41.667 0.00 0.00 0.00 3.77
295 585 4.520492 CAGTTGCAGAGTTAGGATTTGGTT 59.480 41.667 0.00 0.00 0.00 3.67
296 586 4.074970 CAGTTGCAGAGTTAGGATTTGGT 58.925 43.478 0.00 0.00 0.00 3.67
297 587 3.119708 GCAGTTGCAGAGTTAGGATTTGG 60.120 47.826 0.00 0.00 41.59 3.28
410 700 2.995482 CACGTATTCAGCGCGGAC 59.005 61.111 10.55 0.00 0.00 4.79
471 761 4.208686 GGGCGGCTACGAGGACAG 62.209 72.222 9.56 0.00 44.60 3.51
881 1172 1.535462 ACTTGGAAAAATCGTCTGCGG 59.465 47.619 0.00 0.00 38.89 5.69
973 1264 7.171337 GGTCCTACACGATTAAACAAACAACTA 59.829 37.037 0.00 0.00 0.00 2.24
991 1282 3.904965 TGTTCTTGTACCATGGTCCTACA 59.095 43.478 23.76 17.98 0.00 2.74
1198 1501 7.402071 TCTTTCCTCATTAACTTAGCCCTCTTA 59.598 37.037 0.00 0.00 0.00 2.10
1642 1946 7.669722 TGCAGAAAGACCCTACAAATTTATCTT 59.330 33.333 0.00 0.00 0.00 2.40
1940 2244 2.805671 CACTTCACAGCGGAAATGTACA 59.194 45.455 0.00 0.00 0.00 2.90
2015 2319 8.251750 TCCATTTTGACTATCTAAACTGTTCG 57.748 34.615 0.00 0.00 0.00 3.95
2115 2420 8.329502 ACTCAGCCAAGTAAGAAGGTATATTTT 58.670 33.333 0.00 0.00 0.00 1.82
2222 2527 4.902443 TTTATCTTGTTCGCACCAAACA 57.098 36.364 0.00 0.00 34.93 2.83
2283 2588 6.808008 ATGATTTATCAATGTGATCCGGAC 57.192 37.500 6.12 0.90 40.69 4.79
2432 2737 2.472695 AGCAAGGAGTTCATAACGCA 57.527 45.000 0.00 0.00 36.23 5.24
2617 2922 4.593634 ACAGTAGCCTGGATACTATTTCCC 59.406 45.833 23.02 0.00 43.36 3.97
2735 3040 3.536956 TGTATTTCTAGCTGAACCCCG 57.463 47.619 0.00 0.00 33.88 5.73
3039 3344 7.449086 AGTCTACTTATACCCACTCAGATAAGC 59.551 40.741 0.00 0.00 35.98 3.09
3053 3358 7.259161 AGCTAACAACAGCAGTCTACTTATAC 58.741 38.462 0.00 0.00 44.35 1.47
3071 3376 3.016736 GGAAAGGCATTGCTAGCTAACA 58.983 45.455 17.23 0.00 0.00 2.41
3244 3556 5.694995 AGAACAATCTCCTTCAGAAAACCA 58.305 37.500 0.00 0.00 33.62 3.67
4057 7272 4.495844 GGCGTTCATCCTAACAATTAGTGC 60.496 45.833 0.00 0.00 0.00 4.40
4069 7284 0.254178 AATCTGCAGGCGTTCATCCT 59.746 50.000 15.13 0.00 0.00 3.24
4287 7502 5.913137 AATAAGAAACAATCCGGCAATCA 57.087 34.783 0.00 0.00 0.00 2.57
4446 7661 3.821421 ATGGCAAGGTAGTACTACTGC 57.179 47.619 27.19 27.19 36.85 4.40
4498 7757 9.839817 TGATAGTAGTGATAGATCCATACTAGC 57.160 37.037 13.95 13.95 36.86 3.42
4519 7778 7.105588 TCCCCATACATCGATTGATTTGATAG 58.894 38.462 0.00 0.00 30.49 2.08
4737 8000 2.224548 GCATAGGAATAGGGGTGTCACC 60.225 54.545 14.13 14.13 37.60 4.02
4773 8036 1.264288 GTCTTCGAAACACAAGCCCTG 59.736 52.381 0.00 0.00 0.00 4.45
4786 8049 3.385433 TCCAAAGGTGTACAAGTCTTCGA 59.615 43.478 0.00 0.00 0.00 3.71
4788 8051 6.262273 TGATTTCCAAAGGTGTACAAGTCTTC 59.738 38.462 0.00 0.00 0.00 2.87
4797 8060 4.365514 TGCTCTGATTTCCAAAGGTGTA 57.634 40.909 0.00 0.00 0.00 2.90
4812 8075 8.831550 GGGAGTAGTAATTTCTAAATTGCTCTG 58.168 37.037 18.17 0.00 44.45 3.35
4878 8141 9.469807 CCACTCATTTCAGTCTGTATATAGTTC 57.530 37.037 0.00 0.00 0.00 3.01
4879 8142 9.201989 TCCACTCATTTCAGTCTGTATATAGTT 57.798 33.333 0.00 0.00 0.00 2.24
4880 8143 8.634444 GTCCACTCATTTCAGTCTGTATATAGT 58.366 37.037 0.00 0.00 0.00 2.12
4881 8144 8.633561 TGTCCACTCATTTCAGTCTGTATATAG 58.366 37.037 0.00 0.00 0.00 1.31
4882 8145 8.533569 TGTCCACTCATTTCAGTCTGTATATA 57.466 34.615 0.00 0.00 0.00 0.86
4883 8146 7.423844 TGTCCACTCATTTCAGTCTGTATAT 57.576 36.000 0.00 0.00 0.00 0.86
4884 8147 6.850752 TGTCCACTCATTTCAGTCTGTATA 57.149 37.500 0.00 0.00 0.00 1.47
4885 8148 5.745312 TGTCCACTCATTTCAGTCTGTAT 57.255 39.130 0.00 0.00 0.00 2.29
4886 8149 5.545063 TTGTCCACTCATTTCAGTCTGTA 57.455 39.130 0.00 0.00 0.00 2.74
4887 8150 4.422073 TTGTCCACTCATTTCAGTCTGT 57.578 40.909 0.00 0.00 0.00 3.41
4888 8151 4.576053 TGTTTGTCCACTCATTTCAGTCTG 59.424 41.667 0.00 0.00 0.00 3.51
4889 8152 4.576463 GTGTTTGTCCACTCATTTCAGTCT 59.424 41.667 0.00 0.00 32.50 3.24
4890 8153 4.335315 TGTGTTTGTCCACTCATTTCAGTC 59.665 41.667 0.00 0.00 36.30 3.51
4891 8154 4.096382 GTGTGTTTGTCCACTCATTTCAGT 59.904 41.667 0.00 0.00 36.30 3.41
4892 8155 4.336433 AGTGTGTTTGTCCACTCATTTCAG 59.664 41.667 0.00 0.00 37.34 3.02
4893 8156 4.269183 AGTGTGTTTGTCCACTCATTTCA 58.731 39.130 0.00 0.00 37.34 2.69
4894 8157 4.900635 AGTGTGTTTGTCCACTCATTTC 57.099 40.909 0.00 0.00 37.34 2.17
4895 8158 7.307751 CGTTATAGTGTGTTTGTCCACTCATTT 60.308 37.037 0.00 0.00 40.90 2.32
4896 8159 6.147164 CGTTATAGTGTGTTTGTCCACTCATT 59.853 38.462 0.00 0.00 40.90 2.57
4897 8160 5.637810 CGTTATAGTGTGTTTGTCCACTCAT 59.362 40.000 0.00 0.00 40.90 2.90
4898 8161 4.986034 CGTTATAGTGTGTTTGTCCACTCA 59.014 41.667 0.00 0.00 40.90 3.41
4899 8162 4.143179 GCGTTATAGTGTGTTTGTCCACTC 60.143 45.833 0.00 0.00 40.90 3.51
4900 8163 3.744426 GCGTTATAGTGTGTTTGTCCACT 59.256 43.478 0.00 0.00 43.90 4.00
4901 8164 3.495377 TGCGTTATAGTGTGTTTGTCCAC 59.505 43.478 0.00 0.00 35.86 4.02
4902 8165 3.729966 TGCGTTATAGTGTGTTTGTCCA 58.270 40.909 0.00 0.00 0.00 4.02
4903 8166 4.153475 ACATGCGTTATAGTGTGTTTGTCC 59.847 41.667 0.00 0.00 0.00 4.02
4904 8167 5.120208 AGACATGCGTTATAGTGTGTTTGTC 59.880 40.000 0.00 0.00 0.00 3.18
4905 8168 4.994852 AGACATGCGTTATAGTGTGTTTGT 59.005 37.500 0.00 0.00 0.00 2.83
4906 8169 5.530519 AGACATGCGTTATAGTGTGTTTG 57.469 39.130 0.00 0.00 0.00 2.93
4907 8170 7.977293 TGTATAGACATGCGTTATAGTGTGTTT 59.023 33.333 0.00 0.00 0.00 2.83
4908 8171 7.485810 TGTATAGACATGCGTTATAGTGTGTT 58.514 34.615 0.00 0.00 0.00 3.32
4909 8172 7.034685 TGTATAGACATGCGTTATAGTGTGT 57.965 36.000 0.00 0.00 0.00 3.72
4910 8173 8.023706 AGATGTATAGACATGCGTTATAGTGTG 58.976 37.037 7.92 0.00 46.64 3.82
4911 8174 8.112016 AGATGTATAGACATGCGTTATAGTGT 57.888 34.615 7.92 0.00 46.64 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.