Multiple sequence alignment - TraesCS1D01G113000
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G113000
chr1D
100.000
4957
0
0
1
4957
109471601
109476557
0.000000e+00
9154.0
1
TraesCS1D01G113000
chr1D
83.944
928
100
28
2641
3561
109473332
109474217
0.000000e+00
843.0
2
TraesCS1D01G113000
chr1D
83.944
928
100
28
1732
2617
109474241
109475161
0.000000e+00
843.0
3
TraesCS1D01G113000
chr1D
84.685
111
13
2
4833
4941
468265263
468265371
1.890000e-19
108.0
4
TraesCS1D01G113000
chr1B
97.008
4445
91
17
71
4488
165071029
165075458
0.000000e+00
7433.0
5
TraesCS1D01G113000
chr1B
84.056
922
96
29
2650
3563
165072703
165073581
0.000000e+00
841.0
6
TraesCS1D01G113000
chr1B
87.179
585
68
6
1732
2312
165073603
165074184
0.000000e+00
658.0
7
TraesCS1D01G113000
chr1B
95.848
289
8
2
4485
4769
165075499
165075787
9.720000e-127
464.0
8
TraesCS1D01G113000
chr1B
94.382
89
4
1
1
89
165070672
165070759
8.660000e-28
135.0
9
TraesCS1D01G113000
chr1A
94.942
3302
116
19
1
3276
112934730
112938006
0.000000e+00
5125.0
10
TraesCS1D01G113000
chr1A
89.467
1576
88
27
3313
4835
112940926
112942476
0.000000e+00
1919.0
11
TraesCS1D01G113000
chr1A
83.605
921
102
26
2650
3563
112936468
112937346
0.000000e+00
819.0
12
TraesCS1D01G113000
chr1A
88.287
572
55
9
1741
2308
112937377
112937940
0.000000e+00
675.0
13
TraesCS1D01G113000
chr1A
87.625
299
29
7
2348
2640
112940904
112941200
1.710000e-89
340.0
14
TraesCS1D01G113000
chr1A
92.857
56
0
1
3260
3311
112940841
112940896
1.480000e-10
78.7
15
TraesCS1D01G113000
chr5B
85.833
120
15
2
4833
4951
288327809
288327691
5.210000e-25
126.0
16
TraesCS1D01G113000
chr4B
85.593
118
16
1
4833
4950
71346194
71346310
6.740000e-24
122.0
17
TraesCS1D01G113000
chr5A
84.874
119
17
1
4833
4951
337822837
337822954
8.720000e-23
119.0
18
TraesCS1D01G113000
chr5A
84.034
119
18
1
4833
4951
335291589
335291472
4.060000e-21
113.0
19
TraesCS1D01G113000
chr5A
94.595
37
0
2
14
50
514433749
514433783
6.930000e-04
56.5
20
TraesCS1D01G113000
chr5D
83.465
127
18
3
4826
4951
268529512
268529388
1.130000e-21
115.0
21
TraesCS1D01G113000
chr5D
83.193
119
19
1
4833
4951
254521514
254521631
1.890000e-19
108.0
22
TraesCS1D01G113000
chr6A
85.849
106
15
0
4829
4934
76520506
76520401
4.060000e-21
113.0
23
TraesCS1D01G113000
chr7A
81.148
122
23
0
4833
4954
625738506
625738627
1.140000e-16
99.0
24
TraesCS1D01G113000
chr2D
90.196
51
2
3
1
49
562338609
562338560
4.140000e-06
63.9
25
TraesCS1D01G113000
chr2A
90.196
51
2
2
1
49
702942576
702942527
4.140000e-06
63.9
26
TraesCS1D01G113000
chrUn
92.500
40
2
1
12
50
297343200
297343239
6.930000e-04
56.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G113000
chr1D
109471601
109476557
4956
False
3613.333333
9154
89.296000
1
4957
3
chr1D.!!$F2
4956
1
TraesCS1D01G113000
chr1B
165070672
165075787
5115
False
1906.200000
7433
91.694600
1
4769
5
chr1B.!!$F1
4768
2
TraesCS1D01G113000
chr1A
112934730
112942476
7746
False
1492.783333
5125
89.463833
1
4835
6
chr1A.!!$F1
4834
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
471
761
0.035439
TCGGGAGTTTGGATCTTGGC
60.035
55.000
0.0
0.0
0.00
4.52
F
973
1264
0.405585
ACCTTGGTGCCTAATGCTGT
59.594
50.000
0.0
0.0
42.00
4.40
F
2086
2391
3.883830
TGCATTCGCCACCAATTATTT
57.116
38.095
0.0
0.0
37.32
1.40
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2432
2737
2.472695
AGCAAGGAGTTCATAACGCA
57.527
45.000
0.00
0.0
36.23
5.24
R
2735
3040
3.536956
TGTATTTCTAGCTGAACCCCG
57.463
47.619
0.00
0.0
33.88
5.73
R
4069
7284
0.254178
AATCTGCAGGCGTTCATCCT
59.746
50.000
15.13
0.0
0.00
3.24
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
84
85
6.773638
ACAGCCTATTTAGGTCATCCTATTG
58.226
40.000
5.56
0.00
44.68
1.90
117
403
7.536895
TTGCTAGTTAGAGTACTTCGTAGAG
57.463
40.000
0.00
0.00
38.43
2.43
128
414
2.168728
ACTTCGTAGAGAGGGGAAATGC
59.831
50.000
0.00
0.00
38.43
3.56
129
415
2.160721
TCGTAGAGAGGGGAAATGCT
57.839
50.000
0.00
0.00
0.00
3.79
410
700
2.269241
GAGGCCCTGACCTTTCCG
59.731
66.667
0.00
0.00
41.32
4.30
422
712
2.047655
TTTCCGTCCGCGCTGAAT
60.048
55.556
5.56
0.00
36.67
2.57
471
761
0.035439
TCGGGAGTTTGGATCTTGGC
60.035
55.000
0.00
0.00
0.00
4.52
657
948
5.545658
TTTGATCTAGGAATTGTTGCGTC
57.454
39.130
0.00
0.00
0.00
5.19
746
1037
3.948196
GCAAATTGCACACAACAACAT
57.052
38.095
13.73
0.00
44.26
2.71
973
1264
0.405585
ACCTTGGTGCCTAATGCTGT
59.594
50.000
0.00
0.00
42.00
4.40
991
1282
6.366315
TGCTGTAGTTGTTTGTTTAATCGT
57.634
33.333
0.00
0.00
0.00
3.73
1198
1501
9.178758
GAAAGGTAAATCACTACCAGAAATCAT
57.821
33.333
2.81
0.00
43.42
2.45
1323
1627
9.461312
AGCTTTAAGATGTCCAATTGTGTATTA
57.539
29.630
4.43
0.00
0.00
0.98
1732
2036
4.694982
CGCACCAGCATATGATAACCATTA
59.305
41.667
6.97
0.00
42.27
1.90
1940
2244
4.253685
CCCATTCTTGTCACAATCGTACT
58.746
43.478
0.00
0.00
0.00
2.73
2015
2319
4.755266
ATCTTACATGTGGGTGTAGGAC
57.245
45.455
9.11
0.00
41.52
3.85
2086
2391
3.883830
TGCATTCGCCACCAATTATTT
57.116
38.095
0.00
0.00
37.32
1.40
2222
2527
5.941555
TGTTGTAGGGGTGATTTGTTTTT
57.058
34.783
0.00
0.00
0.00
1.94
2328
2633
8.958119
TCATATAGGACTAACAATTTGGTGAC
57.042
34.615
0.00
0.00
0.00
3.67
2432
2737
6.697019
GCAGTGATGTCTATGTTTTTGTTTGT
59.303
34.615
0.00
0.00
0.00
2.83
2671
2976
5.106555
CGATGCTGAAAAAGGTATCAACAGT
60.107
40.000
0.00
0.00
0.00
3.55
2735
3040
5.177696
GTCGGTAGTGATAATGCCATCTTTC
59.822
44.000
0.00
0.00
0.00
2.62
3039
3344
1.375523
GGGGACTTGTACCTGCGTG
60.376
63.158
1.65
0.00
0.00
5.34
3053
3358
0.108186
TGCGTGCTTATCTGAGTGGG
60.108
55.000
0.00
0.00
0.00
4.61
3071
3376
5.024118
AGTGGGTATAAGTAGACTGCTGTT
58.976
41.667
0.00
0.00
0.00
3.16
3244
3556
4.282195
GGTAGAGTATGCTGTAGGCTCAAT
59.718
45.833
0.00
0.00
42.39
2.57
3453
6651
6.473397
AAGACTTAAGATTCAAGCGAACTG
57.527
37.500
10.09
0.00
32.81
3.16
3458
6656
8.723942
ACTTAAGATTCAAGCGAACTGAATAT
57.276
30.769
10.09
2.58
33.05
1.28
3532
6730
3.045634
TCAAGGGTTTTGTCTCAGAGGA
58.954
45.455
0.00
0.00
0.00
3.71
4446
7661
0.250467
CAGTTGTGGACAGGGGAGTG
60.250
60.000
0.00
0.00
0.00
3.51
4498
7757
4.559251
GGACGCTGCTGTTCTTATATATCG
59.441
45.833
0.00
0.00
0.00
2.92
4506
7765
9.444534
CTGCTGTTCTTATATATCGCTAGTATG
57.555
37.037
0.00
0.00
0.00
2.39
4519
7778
7.795482
ATCGCTAGTATGGATCTATCACTAC
57.205
40.000
0.00
0.00
0.00
2.73
4737
8000
2.029828
GGAGTAGGGAGTATCATGTGCG
60.030
54.545
0.00
0.00
36.25
5.34
4770
8033
4.574674
ATTCCTATGCTTGTTGGACTCA
57.425
40.909
0.00
0.00
0.00
3.41
4773
8036
2.012673
CTATGCTTGTTGGACTCAGCC
58.987
52.381
0.00
0.00
0.00
4.85
4788
8051
2.644992
GCCAGGGCTTGTGTTTCG
59.355
61.111
2.30
0.00
38.26
3.46
4797
8060
2.354821
GGCTTGTGTTTCGAAGACTTGT
59.645
45.455
0.00
0.00
34.32
3.16
4805
8068
5.064325
GTGTTTCGAAGACTTGTACACCTTT
59.936
40.000
13.52
0.00
34.32
3.11
4807
8070
3.724374
TCGAAGACTTGTACACCTTTGG
58.276
45.455
14.36
7.68
0.00
3.28
4812
8075
6.565999
CGAAGACTTGTACACCTTTGGAAATC
60.566
42.308
0.00
0.00
0.00
2.17
4837
8100
9.601217
TCAGAGCAATTTAGAAATTACTACTCC
57.399
33.333
0.05
0.00
36.52
3.85
4838
8101
8.831550
CAGAGCAATTTAGAAATTACTACTCCC
58.168
37.037
0.05
0.00
36.52
4.30
4839
8102
8.773216
AGAGCAATTTAGAAATTACTACTCCCT
58.227
33.333
0.05
0.00
36.52
4.20
4840
8103
8.966069
AGCAATTTAGAAATTACTACTCCCTC
57.034
34.615
0.05
0.00
36.52
4.30
4841
8104
7.993758
AGCAATTTAGAAATTACTACTCCCTCC
59.006
37.037
0.05
0.00
36.52
4.30
4842
8105
7.041984
GCAATTTAGAAATTACTACTCCCTCCG
60.042
40.741
0.05
0.00
36.52
4.63
4843
8106
7.672122
ATTTAGAAATTACTACTCCCTCCGT
57.328
36.000
0.00
0.00
0.00
4.69
4844
8107
7.486407
TTTAGAAATTACTACTCCCTCCGTT
57.514
36.000
0.00
0.00
0.00
4.44
4845
8108
5.595257
AGAAATTACTACTCCCTCCGTTC
57.405
43.478
0.00
0.00
0.00
3.95
4846
8109
4.405036
AGAAATTACTACTCCCTCCGTTCC
59.595
45.833
0.00
0.00
0.00
3.62
4847
8110
1.755179
TTACTACTCCCTCCGTTCCG
58.245
55.000
0.00
0.00
0.00
4.30
4848
8111
0.911769
TACTACTCCCTCCGTTCCGA
59.088
55.000
0.00
0.00
0.00
4.55
4849
8112
0.038744
ACTACTCCCTCCGTTCCGAA
59.961
55.000
0.00
0.00
0.00
4.30
4850
8113
1.341778
ACTACTCCCTCCGTTCCGAAT
60.342
52.381
0.00
0.00
0.00
3.34
4851
8114
1.755380
CTACTCCCTCCGTTCCGAATT
59.245
52.381
0.00
0.00
0.00
2.17
4852
8115
1.856629
ACTCCCTCCGTTCCGAATTA
58.143
50.000
0.00
0.00
0.00
1.40
4853
8116
2.395619
ACTCCCTCCGTTCCGAATTAT
58.604
47.619
0.00
0.00
0.00
1.28
4854
8117
3.569491
ACTCCCTCCGTTCCGAATTATA
58.431
45.455
0.00
0.00
0.00
0.98
4855
8118
3.962718
ACTCCCTCCGTTCCGAATTATAA
59.037
43.478
0.00
0.00
0.00
0.98
4856
8119
4.038883
ACTCCCTCCGTTCCGAATTATAAG
59.961
45.833
0.00
0.00
0.00
1.73
4857
8120
4.217510
TCCCTCCGTTCCGAATTATAAGA
58.782
43.478
0.00
0.00
0.00
2.10
4858
8121
4.836736
TCCCTCCGTTCCGAATTATAAGAT
59.163
41.667
0.00
0.00
0.00
2.40
4859
8122
4.929808
CCCTCCGTTCCGAATTATAAGATG
59.070
45.833
0.00
0.00
0.00
2.90
4860
8123
5.510861
CCCTCCGTTCCGAATTATAAGATGT
60.511
44.000
0.00
0.00
0.00
3.06
4861
8124
5.989777
CCTCCGTTCCGAATTATAAGATGTT
59.010
40.000
0.00
0.00
0.00
2.71
4862
8125
6.482308
CCTCCGTTCCGAATTATAAGATGTTT
59.518
38.462
0.00
0.00
0.00
2.83
4863
8126
7.012044
CCTCCGTTCCGAATTATAAGATGTTTT
59.988
37.037
0.00
0.00
0.00
2.43
4864
8127
7.690228
TCCGTTCCGAATTATAAGATGTTTTG
58.310
34.615
0.00
0.00
0.00
2.44
4865
8128
7.549842
TCCGTTCCGAATTATAAGATGTTTTGA
59.450
33.333
0.00
0.00
0.00
2.69
4866
8129
8.178964
CCGTTCCGAATTATAAGATGTTTTGAA
58.821
33.333
0.00
0.00
0.00
2.69
4867
8130
9.716507
CGTTCCGAATTATAAGATGTTTTGAAT
57.283
29.630
0.00
0.00
0.00
2.57
4904
8167
9.469807
GAACTATATACAGACTGAAATGAGTGG
57.530
37.037
10.08
0.00
0.00
4.00
4905
8168
8.768501
ACTATATACAGACTGAAATGAGTGGA
57.231
34.615
10.08
0.00
0.00
4.02
4906
8169
8.634444
ACTATATACAGACTGAAATGAGTGGAC
58.366
37.037
10.08
0.00
0.00
4.02
4907
8170
5.745312
ATACAGACTGAAATGAGTGGACA
57.255
39.130
10.08
0.00
0.00
4.02
4908
8171
4.422073
ACAGACTGAAATGAGTGGACAA
57.578
40.909
10.08
0.00
0.00
3.18
4909
8172
4.780815
ACAGACTGAAATGAGTGGACAAA
58.219
39.130
10.08
0.00
0.00
2.83
4910
8173
4.576463
ACAGACTGAAATGAGTGGACAAAC
59.424
41.667
10.08
0.00
0.00
2.93
4911
8174
4.576053
CAGACTGAAATGAGTGGACAAACA
59.424
41.667
0.00
0.00
0.00
2.83
4912
8175
4.576463
AGACTGAAATGAGTGGACAAACAC
59.424
41.667
0.00
0.00
41.63
3.32
4913
8176
4.269183
ACTGAAATGAGTGGACAAACACA
58.731
39.130
0.00
0.00
43.72
3.72
4914
8177
4.096382
ACTGAAATGAGTGGACAAACACAC
59.904
41.667
0.00
0.00
43.72
3.82
4922
8185
3.744426
AGTGGACAAACACACTATAACGC
59.256
43.478
0.00
0.00
45.45
4.84
4923
8186
3.495377
GTGGACAAACACACTATAACGCA
59.505
43.478
0.00
0.00
40.99
5.24
4924
8187
4.153475
GTGGACAAACACACTATAACGCAT
59.847
41.667
0.00
0.00
40.99
4.73
4925
8188
4.153296
TGGACAAACACACTATAACGCATG
59.847
41.667
0.00
0.00
0.00
4.06
4926
8189
4.153475
GGACAAACACACTATAACGCATGT
59.847
41.667
0.00
0.00
0.00
3.21
4927
8190
5.277601
ACAAACACACTATAACGCATGTC
57.722
39.130
0.00
0.00
0.00
3.06
4928
8191
4.994852
ACAAACACACTATAACGCATGTCT
59.005
37.500
0.00
0.00
0.00
3.41
4929
8192
6.160684
ACAAACACACTATAACGCATGTCTA
58.839
36.000
0.00
0.00
0.00
2.59
4930
8193
6.816640
ACAAACACACTATAACGCATGTCTAT
59.183
34.615
0.00
0.00
0.00
1.98
4931
8194
7.977293
ACAAACACACTATAACGCATGTCTATA
59.023
33.333
0.00
0.00
0.00
1.31
4932
8195
7.925703
AACACACTATAACGCATGTCTATAC
57.074
36.000
0.00
0.00
0.00
1.47
4933
8196
7.034685
ACACACTATAACGCATGTCTATACA
57.965
36.000
0.00
0.00
40.69
2.29
4935
8198
7.808381
ACACACTATAACGCATGTCTATACATC
59.192
37.037
0.00
0.00
44.70
3.06
4936
8199
8.023706
CACACTATAACGCATGTCTATACATCT
58.976
37.037
0.00
0.00
44.70
2.90
4937
8200
9.227777
ACACTATAACGCATGTCTATACATCTA
57.772
33.333
0.00
0.00
44.70
1.98
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
140
426
2.760477
CCGGACCACCATTTCCCA
59.240
61.111
0.00
0.00
35.59
4.37
246
536
0.181587
TTGGGCTTCTCCACGTGAAA
59.818
50.000
19.30
7.44
36.38
2.69
290
580
4.407365
CAGAGTTAGGATTTGGTTGGGTT
58.593
43.478
0.00
0.00
0.00
4.11
292
582
2.755103
GCAGAGTTAGGATTTGGTTGGG
59.245
50.000
0.00
0.00
0.00
4.12
293
583
3.420893
TGCAGAGTTAGGATTTGGTTGG
58.579
45.455
0.00
0.00
0.00
3.77
294
584
4.520492
AGTTGCAGAGTTAGGATTTGGTTG
59.480
41.667
0.00
0.00
0.00
3.77
295
585
4.520492
CAGTTGCAGAGTTAGGATTTGGTT
59.480
41.667
0.00
0.00
0.00
3.67
296
586
4.074970
CAGTTGCAGAGTTAGGATTTGGT
58.925
43.478
0.00
0.00
0.00
3.67
297
587
3.119708
GCAGTTGCAGAGTTAGGATTTGG
60.120
47.826
0.00
0.00
41.59
3.28
410
700
2.995482
CACGTATTCAGCGCGGAC
59.005
61.111
10.55
0.00
0.00
4.79
471
761
4.208686
GGGCGGCTACGAGGACAG
62.209
72.222
9.56
0.00
44.60
3.51
881
1172
1.535462
ACTTGGAAAAATCGTCTGCGG
59.465
47.619
0.00
0.00
38.89
5.69
973
1264
7.171337
GGTCCTACACGATTAAACAAACAACTA
59.829
37.037
0.00
0.00
0.00
2.24
991
1282
3.904965
TGTTCTTGTACCATGGTCCTACA
59.095
43.478
23.76
17.98
0.00
2.74
1198
1501
7.402071
TCTTTCCTCATTAACTTAGCCCTCTTA
59.598
37.037
0.00
0.00
0.00
2.10
1642
1946
7.669722
TGCAGAAAGACCCTACAAATTTATCTT
59.330
33.333
0.00
0.00
0.00
2.40
1940
2244
2.805671
CACTTCACAGCGGAAATGTACA
59.194
45.455
0.00
0.00
0.00
2.90
2015
2319
8.251750
TCCATTTTGACTATCTAAACTGTTCG
57.748
34.615
0.00
0.00
0.00
3.95
2115
2420
8.329502
ACTCAGCCAAGTAAGAAGGTATATTTT
58.670
33.333
0.00
0.00
0.00
1.82
2222
2527
4.902443
TTTATCTTGTTCGCACCAAACA
57.098
36.364
0.00
0.00
34.93
2.83
2283
2588
6.808008
ATGATTTATCAATGTGATCCGGAC
57.192
37.500
6.12
0.90
40.69
4.79
2432
2737
2.472695
AGCAAGGAGTTCATAACGCA
57.527
45.000
0.00
0.00
36.23
5.24
2617
2922
4.593634
ACAGTAGCCTGGATACTATTTCCC
59.406
45.833
23.02
0.00
43.36
3.97
2735
3040
3.536956
TGTATTTCTAGCTGAACCCCG
57.463
47.619
0.00
0.00
33.88
5.73
3039
3344
7.449086
AGTCTACTTATACCCACTCAGATAAGC
59.551
40.741
0.00
0.00
35.98
3.09
3053
3358
7.259161
AGCTAACAACAGCAGTCTACTTATAC
58.741
38.462
0.00
0.00
44.35
1.47
3071
3376
3.016736
GGAAAGGCATTGCTAGCTAACA
58.983
45.455
17.23
0.00
0.00
2.41
3244
3556
5.694995
AGAACAATCTCCTTCAGAAAACCA
58.305
37.500
0.00
0.00
33.62
3.67
4057
7272
4.495844
GGCGTTCATCCTAACAATTAGTGC
60.496
45.833
0.00
0.00
0.00
4.40
4069
7284
0.254178
AATCTGCAGGCGTTCATCCT
59.746
50.000
15.13
0.00
0.00
3.24
4287
7502
5.913137
AATAAGAAACAATCCGGCAATCA
57.087
34.783
0.00
0.00
0.00
2.57
4446
7661
3.821421
ATGGCAAGGTAGTACTACTGC
57.179
47.619
27.19
27.19
36.85
4.40
4498
7757
9.839817
TGATAGTAGTGATAGATCCATACTAGC
57.160
37.037
13.95
13.95
36.86
3.42
4519
7778
7.105588
TCCCCATACATCGATTGATTTGATAG
58.894
38.462
0.00
0.00
30.49
2.08
4737
8000
2.224548
GCATAGGAATAGGGGTGTCACC
60.225
54.545
14.13
14.13
37.60
4.02
4773
8036
1.264288
GTCTTCGAAACACAAGCCCTG
59.736
52.381
0.00
0.00
0.00
4.45
4786
8049
3.385433
TCCAAAGGTGTACAAGTCTTCGA
59.615
43.478
0.00
0.00
0.00
3.71
4788
8051
6.262273
TGATTTCCAAAGGTGTACAAGTCTTC
59.738
38.462
0.00
0.00
0.00
2.87
4797
8060
4.365514
TGCTCTGATTTCCAAAGGTGTA
57.634
40.909
0.00
0.00
0.00
2.90
4812
8075
8.831550
GGGAGTAGTAATTTCTAAATTGCTCTG
58.168
37.037
18.17
0.00
44.45
3.35
4878
8141
9.469807
CCACTCATTTCAGTCTGTATATAGTTC
57.530
37.037
0.00
0.00
0.00
3.01
4879
8142
9.201989
TCCACTCATTTCAGTCTGTATATAGTT
57.798
33.333
0.00
0.00
0.00
2.24
4880
8143
8.634444
GTCCACTCATTTCAGTCTGTATATAGT
58.366
37.037
0.00
0.00
0.00
2.12
4881
8144
8.633561
TGTCCACTCATTTCAGTCTGTATATAG
58.366
37.037
0.00
0.00
0.00
1.31
4882
8145
8.533569
TGTCCACTCATTTCAGTCTGTATATA
57.466
34.615
0.00
0.00
0.00
0.86
4883
8146
7.423844
TGTCCACTCATTTCAGTCTGTATAT
57.576
36.000
0.00
0.00
0.00
0.86
4884
8147
6.850752
TGTCCACTCATTTCAGTCTGTATA
57.149
37.500
0.00
0.00
0.00
1.47
4885
8148
5.745312
TGTCCACTCATTTCAGTCTGTAT
57.255
39.130
0.00
0.00
0.00
2.29
4886
8149
5.545063
TTGTCCACTCATTTCAGTCTGTA
57.455
39.130
0.00
0.00
0.00
2.74
4887
8150
4.422073
TTGTCCACTCATTTCAGTCTGT
57.578
40.909
0.00
0.00
0.00
3.41
4888
8151
4.576053
TGTTTGTCCACTCATTTCAGTCTG
59.424
41.667
0.00
0.00
0.00
3.51
4889
8152
4.576463
GTGTTTGTCCACTCATTTCAGTCT
59.424
41.667
0.00
0.00
32.50
3.24
4890
8153
4.335315
TGTGTTTGTCCACTCATTTCAGTC
59.665
41.667
0.00
0.00
36.30
3.51
4891
8154
4.096382
GTGTGTTTGTCCACTCATTTCAGT
59.904
41.667
0.00
0.00
36.30
3.41
4892
8155
4.336433
AGTGTGTTTGTCCACTCATTTCAG
59.664
41.667
0.00
0.00
37.34
3.02
4893
8156
4.269183
AGTGTGTTTGTCCACTCATTTCA
58.731
39.130
0.00
0.00
37.34
2.69
4894
8157
4.900635
AGTGTGTTTGTCCACTCATTTC
57.099
40.909
0.00
0.00
37.34
2.17
4895
8158
7.307751
CGTTATAGTGTGTTTGTCCACTCATTT
60.308
37.037
0.00
0.00
40.90
2.32
4896
8159
6.147164
CGTTATAGTGTGTTTGTCCACTCATT
59.853
38.462
0.00
0.00
40.90
2.57
4897
8160
5.637810
CGTTATAGTGTGTTTGTCCACTCAT
59.362
40.000
0.00
0.00
40.90
2.90
4898
8161
4.986034
CGTTATAGTGTGTTTGTCCACTCA
59.014
41.667
0.00
0.00
40.90
3.41
4899
8162
4.143179
GCGTTATAGTGTGTTTGTCCACTC
60.143
45.833
0.00
0.00
40.90
3.51
4900
8163
3.744426
GCGTTATAGTGTGTTTGTCCACT
59.256
43.478
0.00
0.00
43.90
4.00
4901
8164
3.495377
TGCGTTATAGTGTGTTTGTCCAC
59.505
43.478
0.00
0.00
35.86
4.02
4902
8165
3.729966
TGCGTTATAGTGTGTTTGTCCA
58.270
40.909
0.00
0.00
0.00
4.02
4903
8166
4.153475
ACATGCGTTATAGTGTGTTTGTCC
59.847
41.667
0.00
0.00
0.00
4.02
4904
8167
5.120208
AGACATGCGTTATAGTGTGTTTGTC
59.880
40.000
0.00
0.00
0.00
3.18
4905
8168
4.994852
AGACATGCGTTATAGTGTGTTTGT
59.005
37.500
0.00
0.00
0.00
2.83
4906
8169
5.530519
AGACATGCGTTATAGTGTGTTTG
57.469
39.130
0.00
0.00
0.00
2.93
4907
8170
7.977293
TGTATAGACATGCGTTATAGTGTGTTT
59.023
33.333
0.00
0.00
0.00
2.83
4908
8171
7.485810
TGTATAGACATGCGTTATAGTGTGTT
58.514
34.615
0.00
0.00
0.00
3.32
4909
8172
7.034685
TGTATAGACATGCGTTATAGTGTGT
57.965
36.000
0.00
0.00
0.00
3.72
4910
8173
8.023706
AGATGTATAGACATGCGTTATAGTGTG
58.976
37.037
7.92
0.00
46.64
3.82
4911
8174
8.112016
AGATGTATAGACATGCGTTATAGTGT
57.888
34.615
7.92
0.00
46.64
3.55
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.