Multiple sequence alignment - TraesCS1D01G112600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G112600 chr1D 100.000 2240 0 0 1 2240 108680836 108678597 0.000000e+00 4137
1 TraesCS1D01G112600 chr2D 85.410 1316 93 44 718 1999 226334451 226335701 0.000000e+00 1275
2 TraesCS1D01G112600 chr2D 93.379 725 46 2 1 723 226332969 226333693 0.000000e+00 1072
3 TraesCS1D01G112600 chr6D 85.377 1313 93 47 718 1997 61812730 61811484 0.000000e+00 1269
4 TraesCS1D01G112600 chr6D 93.379 725 46 2 1 723 61814208 61813484 0.000000e+00 1072
5 TraesCS1D01G112600 chr6D 84.008 494 41 22 1538 1999 65317990 65318477 7.340000e-120 440
6 TraesCS1D01G112600 chr5B 84.470 1320 112 51 718 1998 567867815 567866550 0.000000e+00 1216
7 TraesCS1D01G112600 chr5B 93.655 725 44 2 1 723 567869297 567868573 0.000000e+00 1083
8 TraesCS1D01G112600 chr5B 97.050 339 8 2 1657 1994 542676793 542677130 8.980000e-159 569
9 TraesCS1D01G112600 chr3B 83.988 1299 141 42 718 1997 106955993 106954743 0.000000e+00 1184
10 TraesCS1D01G112600 chr3B 94.207 725 40 2 1 723 8784877 8785601 0.000000e+00 1105
11 TraesCS1D01G112600 chr3B 94.069 725 41 2 1 723 106957447 106956723 0.000000e+00 1099
12 TraesCS1D01G112600 chr3B 85.244 942 97 26 718 1646 8786343 8787255 0.000000e+00 931
13 TraesCS1D01G112600 chr7A 92.552 819 54 5 721 1538 683508870 683508058 0.000000e+00 1168
14 TraesCS1D01G112600 chr7A 94.160 702 41 0 718 1419 683626965 683627666 0.000000e+00 1070
15 TraesCS1D01G112600 chr7A 91.294 425 23 4 1575 1998 683627693 683628104 3.230000e-158 568
16 TraesCS1D01G112600 chr7A 89.522 439 27 6 1538 1969 683508150 683507724 2.530000e-149 538
17 TraesCS1D01G112600 chr3D 93.655 725 44 2 1 723 535143366 535144090 0.000000e+00 1083
18 TraesCS1D01G112600 chr3D 86.567 871 85 18 718 1579 535144848 535145695 0.000000e+00 931
19 TraesCS1D01G112600 chr3D 96.296 243 9 0 1998 2240 271276339 271276097 1.250000e-107 399
20 TraesCS1D01G112600 chr3D 96.281 242 9 0 1999 2240 45157870 45158111 4.480000e-107 398
21 TraesCS1D01G112600 chr3D 96.296 243 8 1 1998 2240 147125179 147125420 4.480000e-107 398
22 TraesCS1D01G112600 chr4A 91.010 723 59 3 3 723 649887485 649888203 0.000000e+00 970
23 TraesCS1D01G112600 chr5D 87.215 876 70 25 718 1579 43163436 43162589 0.000000e+00 959
24 TraesCS1D01G112600 chr4B 90.535 729 60 5 3 723 38607636 38608363 0.000000e+00 955
25 TraesCS1D01G112600 chr4B 79.907 647 99 22 1370 1999 534718443 534719075 1.580000e-121 446
26 TraesCS1D01G112600 chr2A 87.962 731 75 9 3 724 480692760 480692034 0.000000e+00 850
27 TraesCS1D01G112600 chr2A 96.296 243 9 0 1998 2240 450239169 450238927 1.250000e-107 399
28 TraesCS1D01G112600 chrUn 91.363 521 29 8 1489 1999 15859340 15859854 0.000000e+00 699
29 TraesCS1D01G112600 chrUn 89.415 359 21 8 1224 1581 15859136 15859478 9.500000e-119 436
30 TraesCS1D01G112600 chrUn 95.885 243 10 0 1998 2240 20866367 20866125 5.800000e-106 394
31 TraesCS1D01G112600 chrUn 95.885 243 10 0 1998 2240 79998489 79998247 5.800000e-106 394
32 TraesCS1D01G112600 chr2B 80.680 647 93 24 1370 1999 581242788 581242157 7.240000e-130 473
33 TraesCS1D01G112600 chr7D 96.296 243 9 0 1998 2240 385338146 385338388 1.250000e-107 399
34 TraesCS1D01G112600 chr4D 95.885 243 10 0 1998 2240 119068608 119068366 5.800000e-106 394
35 TraesCS1D01G112600 chr4D 95.885 243 10 0 1998 2240 324839750 324839508 5.800000e-106 394
36 TraesCS1D01G112600 chr7B 87.948 307 31 6 1689 1991 234899786 234900090 7.610000e-95 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G112600 chr1D 108678597 108680836 2239 True 4137.0 4137 100.0000 1 2240 1 chr1D.!!$R1 2239
1 TraesCS1D01G112600 chr2D 226332969 226335701 2732 False 1173.5 1275 89.3945 1 1999 2 chr2D.!!$F1 1998
2 TraesCS1D01G112600 chr6D 61811484 61814208 2724 True 1170.5 1269 89.3780 1 1997 2 chr6D.!!$R1 1996
3 TraesCS1D01G112600 chr5B 567866550 567869297 2747 True 1149.5 1216 89.0625 1 1998 2 chr5B.!!$R1 1997
4 TraesCS1D01G112600 chr3B 106954743 106957447 2704 True 1141.5 1184 89.0285 1 1997 2 chr3B.!!$R1 1996
5 TraesCS1D01G112600 chr3B 8784877 8787255 2378 False 1018.0 1105 89.7255 1 1646 2 chr3B.!!$F1 1645
6 TraesCS1D01G112600 chr7A 683507724 683508870 1146 True 853.0 1168 91.0370 721 1969 2 chr7A.!!$R1 1248
7 TraesCS1D01G112600 chr7A 683626965 683628104 1139 False 819.0 1070 92.7270 718 1998 2 chr7A.!!$F1 1280
8 TraesCS1D01G112600 chr3D 535143366 535145695 2329 False 1007.0 1083 90.1110 1 1579 2 chr3D.!!$F3 1578
9 TraesCS1D01G112600 chr4A 649887485 649888203 718 False 970.0 970 91.0100 3 723 1 chr4A.!!$F1 720
10 TraesCS1D01G112600 chr5D 43162589 43163436 847 True 959.0 959 87.2150 718 1579 1 chr5D.!!$R1 861
11 TraesCS1D01G112600 chr4B 38607636 38608363 727 False 955.0 955 90.5350 3 723 1 chr4B.!!$F1 720
12 TraesCS1D01G112600 chr4B 534718443 534719075 632 False 446.0 446 79.9070 1370 1999 1 chr4B.!!$F2 629
13 TraesCS1D01G112600 chr2A 480692034 480692760 726 True 850.0 850 87.9620 3 724 1 chr2A.!!$R2 721
14 TraesCS1D01G112600 chrUn 15859136 15859854 718 False 567.5 699 90.3890 1224 1999 2 chrUn.!!$F1 775
15 TraesCS1D01G112600 chr2B 581242157 581242788 631 True 473.0 473 80.6800 1370 1999 1 chr2B.!!$R1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.112995 ACATGCTTGGTGTGGTGGAT 59.887 50.0 4.44 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 2346 0.036448 ACAGCAGCATCAGCACTTCT 59.964 50.0 0.0 0.0 45.49 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.308401 TGCACTAGGAGCATTAGATGGA 58.692 45.455 7.91 0.00 37.02 3.41
86 87 2.845345 CCTGTGGCTTCCCAAGGGT 61.845 63.158 4.80 0.00 44.33 4.34
91 92 1.068943 TGGCTTCCCAAGGGTGGTAA 61.069 55.000 4.80 0.00 44.30 2.85
139 140 0.112995 ACATGCTTGGTGTGGTGGAT 59.887 50.000 4.44 0.00 0.00 3.41
155 156 6.268617 TGTGGTGGATTGGAACATGAAATTTA 59.731 34.615 0.00 0.00 39.30 1.40
210 211 3.383092 ACTCTAGAGTCCTACGCGG 57.617 57.895 20.00 0.00 36.92 6.46
288 289 5.304686 TCTCTTGGCCTTTTGTTCTCTTA 57.695 39.130 3.32 0.00 0.00 2.10
296 297 5.118664 GGCCTTTTGTTCTCTTAAATTTCGC 59.881 40.000 0.00 0.00 0.00 4.70
307 308 6.148645 TCTCTTAAATTTCGCATGCTACAACA 59.851 34.615 17.13 0.00 0.00 3.33
338 339 7.745620 ACTCACTTGTTTAACAATAGGAAGG 57.254 36.000 11.12 0.62 37.48 3.46
387 388 3.853355 ATGGACCTGGATTTCTAGCTG 57.147 47.619 0.00 0.00 0.00 4.24
400 401 4.492494 TTCTAGCTGCATTCAGATCCAA 57.508 40.909 1.02 0.00 42.95 3.53
456 457 3.019564 CAACAACCCCAAAATGCCAAAA 58.980 40.909 0.00 0.00 0.00 2.44
520 522 4.349365 AGAGAACTTTTGGGTTGTGGAAA 58.651 39.130 0.00 0.00 0.00 3.13
539 541 5.538433 TGGAAAAAGAAGTGGGGTATTCTTG 59.462 40.000 1.28 0.00 43.25 3.02
571 573 7.839680 AAGTTTCTTTGACATAAAGGACCAT 57.160 32.000 0.00 0.00 0.00 3.55
603 605 6.325028 TGTGTCCATTGGGTTTTCAATAAGAA 59.675 34.615 2.09 0.00 35.78 2.52
612 614 7.957002 TGGGTTTTCAATAAGAAGCATAACAA 58.043 30.769 0.00 0.00 37.57 2.83
780 1555 1.608109 CTTTGTATGTGTGTGCAGGCA 59.392 47.619 0.00 0.00 0.00 4.75
948 1723 2.969628 TCGAAGCCTCTCCAGAATTC 57.030 50.000 0.00 0.00 0.00 2.17
964 1739 2.397044 ATTCCCACCAAAAAGGCAGA 57.603 45.000 0.00 0.00 43.14 4.26
1087 1862 1.131883 CTCTTGAAATCCTTGCTGCCG 59.868 52.381 0.00 0.00 0.00 5.69
1137 1912 2.158914 AGACATGTTGCGAGCATATGGA 60.159 45.455 19.58 0.00 0.00 3.41
1146 1921 3.947196 TGCGAGCATATGGAAAACTCATT 59.053 39.130 4.56 0.00 0.00 2.57
1149 1924 5.559799 GCGAGCATATGGAAAACTCATTCTC 60.560 44.000 4.56 0.00 0.00 2.87
1221 1996 3.896888 AGGAATGGTTGTTGATGCTCAAA 59.103 39.130 0.96 0.00 38.22 2.69
1293 2068 7.859325 TTGTTCCAAGTAATAGCTATGAACC 57.141 36.000 20.84 10.09 32.66 3.62
1298 2073 5.698545 CCAAGTAATAGCTATGAACCTGCTC 59.301 44.000 7.09 0.00 38.15 4.26
1339 2117 9.906660 TTATTGTAATGATGGAAAACACTTGTC 57.093 29.630 0.00 0.00 0.00 3.18
1350 2128 3.275617 AACACTTGTCCTGTGTGCTTA 57.724 42.857 0.13 0.00 46.46 3.09
1443 2221 3.475575 TGTGCTGCTGATTTGTAAGTGA 58.524 40.909 0.00 0.00 0.00 3.41
1484 2277 1.159285 TGCTGTACAAGTGCTGATGC 58.841 50.000 7.07 0.00 40.20 3.91
1485 2278 1.271001 TGCTGTACAAGTGCTGATGCT 60.271 47.619 7.07 0.00 40.48 3.79
1486 2279 1.129998 GCTGTACAAGTGCTGATGCTG 59.870 52.381 0.00 0.00 40.48 4.41
1487 2280 1.129998 CTGTACAAGTGCTGATGCTGC 59.870 52.381 0.00 0.00 40.48 5.25
1521 2341 2.255554 CAAGTGCTGCTGCTGCTG 59.744 61.111 27.67 16.73 40.48 4.41
1527 2347 3.487417 CTGCTGCTGCTGCTGTAG 58.513 61.111 27.67 21.09 42.09 2.74
1528 2348 3.062639 TGCTGCTGCTGCTGTAGA 58.937 55.556 27.67 8.50 39.81 2.59
1529 2349 1.372307 TGCTGCTGCTGCTGTAGAA 59.628 52.632 27.67 14.04 39.81 2.10
1530 2350 0.672711 TGCTGCTGCTGCTGTAGAAG 60.673 55.000 27.67 12.22 39.81 2.85
1533 2353 0.952497 TGCTGCTGCTGTAGAAGTGC 60.952 55.000 17.00 0.00 40.48 4.40
1534 2354 0.673022 GCTGCTGCTGTAGAAGTGCT 60.673 55.000 12.78 0.00 34.18 4.40
1535 2355 1.077123 CTGCTGCTGTAGAAGTGCTG 58.923 55.000 2.42 0.00 0.00 4.41
1536 2356 0.681175 TGCTGCTGTAGAAGTGCTGA 59.319 50.000 0.00 0.00 0.00 4.26
1576 2396 2.476854 GCTGCTGCTGTATAAGTGTTGC 60.477 50.000 8.53 0.00 36.03 4.17
1577 2397 3.005554 CTGCTGCTGTATAAGTGTTGCT 58.994 45.455 0.00 0.00 0.00 3.91
1578 2398 2.743664 TGCTGCTGTATAAGTGTTGCTG 59.256 45.455 0.00 0.00 0.00 4.41
1579 2399 2.476854 GCTGCTGTATAAGTGTTGCTGC 60.477 50.000 0.00 0.00 37.96 5.25
1580 2400 3.005554 CTGCTGTATAAGTGTTGCTGCT 58.994 45.455 0.00 0.00 0.00 4.24
1581 2401 2.743664 TGCTGTATAAGTGTTGCTGCTG 59.256 45.455 0.00 0.00 0.00 4.41
1582 2402 2.476854 GCTGTATAAGTGTTGCTGCTGC 60.477 50.000 8.89 8.89 40.20 5.25
1583 2403 3.005554 CTGTATAAGTGTTGCTGCTGCT 58.994 45.455 17.00 0.00 40.48 4.24
1584 2404 2.743664 TGTATAAGTGTTGCTGCTGCTG 59.256 45.455 17.00 0.77 40.48 4.41
1585 2405 0.524862 ATAAGTGTTGCTGCTGCTGC 59.475 50.000 22.51 22.51 40.48 5.25
1586 2406 0.535780 TAAGTGTTGCTGCTGCTGCT 60.536 50.000 27.67 12.30 40.48 4.24
1587 2407 2.050351 GTGTTGCTGCTGCTGCTG 60.050 61.111 27.67 16.73 40.48 4.41
1588 2408 2.517638 TGTTGCTGCTGCTGCTGT 60.518 55.556 27.67 0.00 39.81 4.40
1589 2409 2.050351 GTTGCTGCTGCTGCTGTG 60.050 61.111 27.67 10.72 39.81 3.66
1590 2410 3.973516 TTGCTGCTGCTGCTGTGC 61.974 61.111 27.67 18.47 39.81 4.57
1592 2412 3.973516 GCTGCTGCTGCTGTGCAA 61.974 61.111 22.10 0.00 42.83 4.08
1593 2413 2.255554 CTGCTGCTGCTGTGCAAG 59.744 61.111 17.00 0.57 42.83 4.01
1594 2414 2.517638 TGCTGCTGCTGTGCAAGT 60.518 55.556 17.00 0.00 42.83 3.16
1595 2415 2.050351 GCTGCTGCTGTGCAAGTG 60.050 61.111 8.53 0.00 42.83 3.16
1596 2416 2.050351 CTGCTGCTGTGCAAGTGC 60.050 61.111 0.00 0.00 42.83 4.40
1597 2417 2.517638 TGCTGCTGTGCAAGTGCT 60.518 55.556 4.69 0.00 40.29 4.40
1598 2418 2.050351 GCTGCTGTGCAAGTGCTG 60.050 61.111 4.69 8.33 38.41 4.41
1639 2528 5.282055 TGCTGCTATAGAATAAGTGCTGT 57.718 39.130 3.21 0.00 0.00 4.40
1850 2847 3.760684 ACCATCCAAACAAGCTCAGAATC 59.239 43.478 0.00 0.00 0.00 2.52
1999 2996 5.643379 ATCAACATCCAAACAAAGCGTAT 57.357 34.783 0.00 0.00 0.00 3.06
2000 2997 6.751514 ATCAACATCCAAACAAAGCGTATA 57.248 33.333 0.00 0.00 0.00 1.47
2001 2998 6.561737 TCAACATCCAAACAAAGCGTATAA 57.438 33.333 0.00 0.00 0.00 0.98
2002 2999 6.607689 TCAACATCCAAACAAAGCGTATAAG 58.392 36.000 0.00 0.00 0.00 1.73
2003 3000 6.205853 TCAACATCCAAACAAAGCGTATAAGT 59.794 34.615 0.00 0.00 0.00 2.24
2004 3001 7.388224 TCAACATCCAAACAAAGCGTATAAGTA 59.612 33.333 0.00 0.00 0.00 2.24
2005 3002 7.675962 ACATCCAAACAAAGCGTATAAGTAA 57.324 32.000 0.00 0.00 0.00 2.24
2006 3003 8.276252 ACATCCAAACAAAGCGTATAAGTAAT 57.724 30.769 0.00 0.00 0.00 1.89
2007 3004 8.181573 ACATCCAAACAAAGCGTATAAGTAATG 58.818 33.333 0.00 0.00 0.00 1.90
2008 3005 7.079182 TCCAAACAAAGCGTATAAGTAATGG 57.921 36.000 0.00 0.00 0.00 3.16
2009 3006 6.655848 TCCAAACAAAGCGTATAAGTAATGGT 59.344 34.615 0.00 0.00 0.00 3.55
2010 3007 6.964934 CCAAACAAAGCGTATAAGTAATGGTC 59.035 38.462 0.00 0.00 0.00 4.02
2011 3008 7.148306 CCAAACAAAGCGTATAAGTAATGGTCT 60.148 37.037 0.00 0.00 0.00 3.85
2012 3009 8.875803 CAAACAAAGCGTATAAGTAATGGTCTA 58.124 33.333 0.00 0.00 0.00 2.59
2013 3010 8.644318 AACAAAGCGTATAAGTAATGGTCTAG 57.356 34.615 0.00 0.00 0.00 2.43
2014 3011 7.779073 ACAAAGCGTATAAGTAATGGTCTAGT 58.221 34.615 0.00 0.00 0.00 2.57
2015 3012 7.705325 ACAAAGCGTATAAGTAATGGTCTAGTG 59.295 37.037 0.00 0.00 0.00 2.74
2016 3013 5.770417 AGCGTATAAGTAATGGTCTAGTGC 58.230 41.667 0.00 0.00 0.00 4.40
2017 3014 4.922103 GCGTATAAGTAATGGTCTAGTGCC 59.078 45.833 0.00 0.00 0.00 5.01
2018 3015 5.152097 CGTATAAGTAATGGTCTAGTGCCG 58.848 45.833 0.00 0.00 0.00 5.69
2019 3016 5.278169 CGTATAAGTAATGGTCTAGTGCCGT 60.278 44.000 0.00 0.00 0.00 5.68
2020 3017 3.521947 AAGTAATGGTCTAGTGCCGTC 57.478 47.619 0.00 0.00 0.00 4.79
2021 3018 1.404391 AGTAATGGTCTAGTGCCGTCG 59.596 52.381 0.00 0.00 0.00 5.12
2022 3019 1.402968 GTAATGGTCTAGTGCCGTCGA 59.597 52.381 0.00 0.00 0.00 4.20
2023 3020 1.112113 AATGGTCTAGTGCCGTCGAT 58.888 50.000 0.00 0.00 0.00 3.59
2024 3021 1.977056 ATGGTCTAGTGCCGTCGATA 58.023 50.000 0.00 0.00 0.00 2.92
2025 3022 1.753930 TGGTCTAGTGCCGTCGATAA 58.246 50.000 0.00 0.00 0.00 1.75
2026 3023 2.093890 TGGTCTAGTGCCGTCGATAAA 58.906 47.619 0.00 0.00 0.00 1.40
2027 3024 2.691526 TGGTCTAGTGCCGTCGATAAAT 59.308 45.455 0.00 0.00 0.00 1.40
2028 3025 3.131577 TGGTCTAGTGCCGTCGATAAATT 59.868 43.478 0.00 0.00 0.00 1.82
2029 3026 3.489785 GGTCTAGTGCCGTCGATAAATTG 59.510 47.826 0.00 0.00 0.00 2.32
2030 3027 4.357142 GTCTAGTGCCGTCGATAAATTGA 58.643 43.478 0.00 0.00 0.00 2.57
2031 3028 4.802039 GTCTAGTGCCGTCGATAAATTGAA 59.198 41.667 0.00 0.00 0.00 2.69
2032 3029 5.041287 TCTAGTGCCGTCGATAAATTGAAG 58.959 41.667 0.00 0.00 0.00 3.02
2033 3030 2.351726 AGTGCCGTCGATAAATTGAAGC 59.648 45.455 0.00 0.00 0.00 3.86
2034 3031 2.095213 GTGCCGTCGATAAATTGAAGCA 59.905 45.455 0.00 3.24 32.40 3.91
2035 3032 2.744741 TGCCGTCGATAAATTGAAGCAA 59.255 40.909 0.00 0.00 32.10 3.91
2036 3033 3.376859 TGCCGTCGATAAATTGAAGCAAT 59.623 39.130 0.00 0.00 35.39 3.56
2037 3034 3.725740 GCCGTCGATAAATTGAAGCAATG 59.274 43.478 0.00 0.00 34.04 2.82
2038 3035 3.725740 CCGTCGATAAATTGAAGCAATGC 59.274 43.478 0.00 0.00 34.04 3.56
2039 3036 3.725740 CGTCGATAAATTGAAGCAATGCC 59.274 43.478 0.00 0.00 34.04 4.40
2040 3037 4.671377 GTCGATAAATTGAAGCAATGCCA 58.329 39.130 0.00 0.00 34.04 4.92
2041 3038 4.500477 GTCGATAAATTGAAGCAATGCCAC 59.500 41.667 0.00 0.00 34.04 5.01
2042 3039 3.798337 CGATAAATTGAAGCAATGCCACC 59.202 43.478 0.00 0.00 34.04 4.61
2043 3040 4.677514 CGATAAATTGAAGCAATGCCACCA 60.678 41.667 0.00 0.00 34.04 4.17
2044 3041 2.460757 AATTGAAGCAATGCCACCAC 57.539 45.000 0.00 0.00 34.04 4.16
2045 3042 0.609662 ATTGAAGCAATGCCACCACC 59.390 50.000 0.00 0.00 32.39 4.61
2046 3043 0.758310 TTGAAGCAATGCCACCACCA 60.758 50.000 0.00 0.00 0.00 4.17
2047 3044 0.542467 TGAAGCAATGCCACCACCAT 60.542 50.000 0.00 0.00 0.00 3.55
2048 3045 0.609662 GAAGCAATGCCACCACCATT 59.390 50.000 0.00 0.00 33.41 3.16
2049 3046 1.002315 GAAGCAATGCCACCACCATTT 59.998 47.619 0.00 0.00 30.90 2.32
2050 3047 1.058284 AGCAATGCCACCACCATTTT 58.942 45.000 0.00 0.00 30.90 1.82
2051 3048 2.255406 AGCAATGCCACCACCATTTTA 58.745 42.857 0.00 0.00 30.90 1.52
2052 3049 2.839425 AGCAATGCCACCACCATTTTAT 59.161 40.909 0.00 0.00 30.90 1.40
2053 3050 2.937799 GCAATGCCACCACCATTTTATG 59.062 45.455 0.00 0.00 30.90 1.90
2054 3051 3.369261 GCAATGCCACCACCATTTTATGA 60.369 43.478 0.00 0.00 30.90 2.15
2055 3052 4.829968 CAATGCCACCACCATTTTATGAA 58.170 39.130 0.00 0.00 30.90 2.57
2056 3053 4.741321 ATGCCACCACCATTTTATGAAG 57.259 40.909 0.00 0.00 0.00 3.02
2057 3054 3.505386 TGCCACCACCATTTTATGAAGT 58.495 40.909 0.00 0.00 0.00 3.01
2058 3055 3.257873 TGCCACCACCATTTTATGAAGTG 59.742 43.478 0.00 0.00 0.00 3.16
2059 3056 3.848726 CCACCACCATTTTATGAAGTGC 58.151 45.455 0.00 0.00 0.00 4.40
2060 3057 3.511146 CCACCACCATTTTATGAAGTGCT 59.489 43.478 0.00 0.00 0.00 4.40
2061 3058 4.021192 CCACCACCATTTTATGAAGTGCTT 60.021 41.667 0.00 0.00 0.00 3.91
2062 3059 4.925054 CACCACCATTTTATGAAGTGCTTG 59.075 41.667 0.00 0.00 0.00 4.01
2063 3060 4.588528 ACCACCATTTTATGAAGTGCTTGT 59.411 37.500 0.00 0.00 0.00 3.16
2064 3061 4.925054 CCACCATTTTATGAAGTGCTTGTG 59.075 41.667 0.00 0.00 0.00 3.33
2065 3062 5.509501 CCACCATTTTATGAAGTGCTTGTGT 60.510 40.000 0.00 0.00 0.00 3.72
2066 3063 5.630680 CACCATTTTATGAAGTGCTTGTGTC 59.369 40.000 0.00 0.00 0.00 3.67
2067 3064 5.536161 ACCATTTTATGAAGTGCTTGTGTCT 59.464 36.000 0.00 0.00 0.00 3.41
2068 3065 6.040842 ACCATTTTATGAAGTGCTTGTGTCTT 59.959 34.615 0.00 0.00 0.00 3.01
2069 3066 6.364165 CCATTTTATGAAGTGCTTGTGTCTTG 59.636 38.462 0.00 0.00 0.00 3.02
2070 3067 4.488126 TTATGAAGTGCTTGTGTCTTGC 57.512 40.909 0.00 0.00 0.00 4.01
2071 3068 2.042686 TGAAGTGCTTGTGTCTTGCT 57.957 45.000 0.00 0.00 0.00 3.91
2072 3069 2.368439 TGAAGTGCTTGTGTCTTGCTT 58.632 42.857 0.00 0.00 0.00 3.91
2073 3070 2.754552 TGAAGTGCTTGTGTCTTGCTTT 59.245 40.909 0.00 0.00 0.00 3.51
2074 3071 3.944650 TGAAGTGCTTGTGTCTTGCTTTA 59.055 39.130 0.00 0.00 0.00 1.85
2075 3072 4.580167 TGAAGTGCTTGTGTCTTGCTTTAT 59.420 37.500 0.00 0.00 0.00 1.40
2076 3073 5.067674 TGAAGTGCTTGTGTCTTGCTTTATT 59.932 36.000 0.00 0.00 0.00 1.40
2077 3074 5.520376 AGTGCTTGTGTCTTGCTTTATTT 57.480 34.783 0.00 0.00 0.00 1.40
2078 3075 5.523369 AGTGCTTGTGTCTTGCTTTATTTC 58.477 37.500 0.00 0.00 0.00 2.17
2079 3076 4.681483 GTGCTTGTGTCTTGCTTTATTTCC 59.319 41.667 0.00 0.00 0.00 3.13
2080 3077 4.237724 GCTTGTGTCTTGCTTTATTTCCC 58.762 43.478 0.00 0.00 0.00 3.97
2081 3078 4.261994 GCTTGTGTCTTGCTTTATTTCCCA 60.262 41.667 0.00 0.00 0.00 4.37
2082 3079 5.567423 GCTTGTGTCTTGCTTTATTTCCCAT 60.567 40.000 0.00 0.00 0.00 4.00
2083 3080 5.389859 TGTGTCTTGCTTTATTTCCCATG 57.610 39.130 0.00 0.00 0.00 3.66
2084 3081 5.076182 TGTGTCTTGCTTTATTTCCCATGA 58.924 37.500 0.00 0.00 0.00 3.07
2085 3082 5.538053 TGTGTCTTGCTTTATTTCCCATGAA 59.462 36.000 0.00 0.00 0.00 2.57
2086 3083 6.211184 TGTGTCTTGCTTTATTTCCCATGAAT 59.789 34.615 0.00 0.00 0.00 2.57
2087 3084 7.099120 GTGTCTTGCTTTATTTCCCATGAATT 58.901 34.615 0.00 0.00 0.00 2.17
2088 3085 7.063780 GTGTCTTGCTTTATTTCCCATGAATTG 59.936 37.037 0.00 0.00 0.00 2.32
2089 3086 7.099120 GTCTTGCTTTATTTCCCATGAATTGT 58.901 34.615 0.00 0.00 0.00 2.71
2090 3087 7.063780 GTCTTGCTTTATTTCCCATGAATTGTG 59.936 37.037 0.00 0.00 0.00 3.33
2091 3088 6.357579 TGCTTTATTTCCCATGAATTGTGT 57.642 33.333 0.00 0.00 0.00 3.72
2092 3089 6.767456 TGCTTTATTTCCCATGAATTGTGTT 58.233 32.000 0.00 0.00 0.00 3.32
2093 3090 7.901029 TGCTTTATTTCCCATGAATTGTGTTA 58.099 30.769 0.00 0.00 0.00 2.41
2094 3091 8.538701 TGCTTTATTTCCCATGAATTGTGTTAT 58.461 29.630 0.00 0.00 0.00 1.89
2095 3092 9.382275 GCTTTATTTCCCATGAATTGTGTTATT 57.618 29.630 0.00 0.00 0.00 1.40
2097 3094 8.715191 TTATTTCCCATGAATTGTGTTATTGC 57.285 30.769 0.00 0.00 0.00 3.56
2098 3095 5.735285 TTCCCATGAATTGTGTTATTGCA 57.265 34.783 0.00 0.00 0.00 4.08
2099 3096 5.327616 TCCCATGAATTGTGTTATTGCAG 57.672 39.130 0.00 0.00 0.00 4.41
2100 3097 4.771577 TCCCATGAATTGTGTTATTGCAGT 59.228 37.500 0.00 0.00 0.00 4.40
2101 3098 5.245751 TCCCATGAATTGTGTTATTGCAGTT 59.754 36.000 0.00 0.00 0.00 3.16
2102 3099 6.435591 TCCCATGAATTGTGTTATTGCAGTTA 59.564 34.615 0.00 0.00 0.00 2.24
2103 3100 7.039434 TCCCATGAATTGTGTTATTGCAGTTAA 60.039 33.333 0.00 0.00 0.00 2.01
2104 3101 7.601886 CCCATGAATTGTGTTATTGCAGTTAAA 59.398 33.333 0.00 0.00 0.00 1.52
2105 3102 8.434661 CCATGAATTGTGTTATTGCAGTTAAAC 58.565 33.333 0.00 0.00 0.00 2.01
2106 3103 9.195411 CATGAATTGTGTTATTGCAGTTAAACT 57.805 29.630 0.00 0.00 0.00 2.66
2107 3104 9.762933 ATGAATTGTGTTATTGCAGTTAAACTT 57.237 25.926 0.00 0.00 0.00 2.66
2119 3116 6.966021 TGCAGTTAAACTTAAATCTCACACC 58.034 36.000 0.00 0.00 0.00 4.16
2120 3117 6.077838 GCAGTTAAACTTAAATCTCACACCG 58.922 40.000 0.00 0.00 0.00 4.94
2121 3118 6.077838 CAGTTAAACTTAAATCTCACACCGC 58.922 40.000 0.00 0.00 0.00 5.68
2122 3119 5.995897 AGTTAAACTTAAATCTCACACCGCT 59.004 36.000 0.00 0.00 0.00 5.52
2123 3120 7.117236 CAGTTAAACTTAAATCTCACACCGCTA 59.883 37.037 0.00 0.00 0.00 4.26
2124 3121 7.658575 AGTTAAACTTAAATCTCACACCGCTAA 59.341 33.333 0.00 0.00 0.00 3.09
2125 3122 5.857822 AACTTAAATCTCACACCGCTAAC 57.142 39.130 0.00 0.00 0.00 2.34
2126 3123 4.890088 ACTTAAATCTCACACCGCTAACA 58.110 39.130 0.00 0.00 0.00 2.41
2127 3124 5.488341 ACTTAAATCTCACACCGCTAACAT 58.512 37.500 0.00 0.00 0.00 2.71
2128 3125 5.938125 ACTTAAATCTCACACCGCTAACATT 59.062 36.000 0.00 0.00 0.00 2.71
2129 3126 4.685169 AAATCTCACACCGCTAACATTG 57.315 40.909 0.00 0.00 0.00 2.82
2130 3127 1.438651 TCTCACACCGCTAACATTGC 58.561 50.000 0.00 0.00 0.00 3.56
2131 3128 1.001974 TCTCACACCGCTAACATTGCT 59.998 47.619 0.00 0.00 0.00 3.91
2132 3129 1.806542 CTCACACCGCTAACATTGCTT 59.193 47.619 0.00 0.00 0.00 3.91
2133 3130 1.804151 TCACACCGCTAACATTGCTTC 59.196 47.619 0.00 0.00 0.00 3.86
2134 3131 1.535028 CACACCGCTAACATTGCTTCA 59.465 47.619 0.00 0.00 0.00 3.02
2135 3132 2.162208 CACACCGCTAACATTGCTTCAT 59.838 45.455 0.00 0.00 0.00 2.57
2136 3133 2.420022 ACACCGCTAACATTGCTTCATC 59.580 45.455 0.00 0.00 0.00 2.92
2137 3134 2.017049 ACCGCTAACATTGCTTCATCC 58.983 47.619 0.00 0.00 0.00 3.51
2138 3135 1.334869 CCGCTAACATTGCTTCATCCC 59.665 52.381 0.00 0.00 0.00 3.85
2139 3136 2.016318 CGCTAACATTGCTTCATCCCA 58.984 47.619 0.00 0.00 0.00 4.37
2140 3137 2.032550 CGCTAACATTGCTTCATCCCAG 59.967 50.000 0.00 0.00 0.00 4.45
2141 3138 3.019564 GCTAACATTGCTTCATCCCAGT 58.980 45.455 0.00 0.00 0.00 4.00
2142 3139 3.181493 GCTAACATTGCTTCATCCCAGTG 60.181 47.826 0.00 0.00 0.00 3.66
2143 3140 1.843368 ACATTGCTTCATCCCAGTGG 58.157 50.000 0.63 0.63 0.00 4.00
2145 3142 2.225091 ACATTGCTTCATCCCAGTGGAA 60.225 45.455 11.95 0.00 45.98 3.53
2146 3143 1.909700 TTGCTTCATCCCAGTGGAAC 58.090 50.000 11.95 0.00 45.98 3.62
2147 3144 0.038166 TGCTTCATCCCAGTGGAACC 59.962 55.000 11.95 0.00 45.98 3.62
2148 3145 1.026718 GCTTCATCCCAGTGGAACCG 61.027 60.000 11.95 0.00 45.98 4.44
2149 3146 1.002624 TTCATCCCAGTGGAACCGC 60.003 57.895 11.95 0.00 45.98 5.68
2150 3147 1.773856 TTCATCCCAGTGGAACCGCA 61.774 55.000 11.95 0.00 45.98 5.69
2151 3148 2.040544 CATCCCAGTGGAACCGCAC 61.041 63.158 11.95 0.00 45.98 5.34
2152 3149 2.525124 ATCCCAGTGGAACCGCACA 61.525 57.895 11.95 0.00 45.98 4.57
2153 3150 2.063015 ATCCCAGTGGAACCGCACAA 62.063 55.000 11.95 0.00 45.98 3.33
2154 3151 1.826054 CCCAGTGGAACCGCACAAA 60.826 57.895 11.95 0.00 37.80 2.83
2155 3152 1.178534 CCCAGTGGAACCGCACAAAT 61.179 55.000 11.95 0.00 37.80 2.32
2156 3153 0.673437 CCAGTGGAACCGCACAAATT 59.327 50.000 1.68 0.00 37.80 1.82
2157 3154 1.068434 CCAGTGGAACCGCACAAATTT 59.932 47.619 1.68 0.00 37.80 1.82
2158 3155 2.126467 CAGTGGAACCGCACAAATTTG 58.874 47.619 16.67 16.67 37.80 2.32
2159 3156 2.028130 AGTGGAACCGCACAAATTTGA 58.972 42.857 24.64 0.00 37.80 2.69
2160 3157 2.627699 AGTGGAACCGCACAAATTTGAT 59.372 40.909 24.64 6.33 37.80 2.57
2161 3158 2.986479 GTGGAACCGCACAAATTTGATC 59.014 45.455 24.64 13.44 0.00 2.92
2162 3159 2.250188 GGAACCGCACAAATTTGATCG 58.750 47.619 24.64 22.49 0.00 3.69
2163 3160 1.648681 GAACCGCACAAATTTGATCGC 59.351 47.619 24.64 19.87 0.00 4.58
2164 3161 0.595588 ACCGCACAAATTTGATCGCA 59.404 45.000 24.64 0.00 0.00 5.10
2165 3162 0.984109 CCGCACAAATTTGATCGCAC 59.016 50.000 24.64 6.09 0.00 5.34
2166 3163 0.629767 CGCACAAATTTGATCGCACG 59.370 50.000 24.64 13.24 0.00 5.34
2167 3164 1.685302 GCACAAATTTGATCGCACGT 58.315 45.000 24.64 0.00 0.00 4.49
2168 3165 2.050691 GCACAAATTTGATCGCACGTT 58.949 42.857 24.64 0.00 0.00 3.99
2169 3166 2.470999 GCACAAATTTGATCGCACGTTT 59.529 40.909 24.64 0.00 0.00 3.60
2170 3167 3.666334 GCACAAATTTGATCGCACGTTTA 59.334 39.130 24.64 0.00 0.00 2.01
2171 3168 4.431086 GCACAAATTTGATCGCACGTTTAC 60.431 41.667 24.64 0.00 0.00 2.01
2172 3169 4.909305 CACAAATTTGATCGCACGTTTACT 59.091 37.500 24.64 0.00 0.00 2.24
2173 3170 4.909305 ACAAATTTGATCGCACGTTTACTG 59.091 37.500 24.64 0.00 0.00 2.74
2174 3171 5.143660 CAAATTTGATCGCACGTTTACTGA 58.856 37.500 13.08 0.00 0.00 3.41
2175 3172 3.781341 TTTGATCGCACGTTTACTGAC 57.219 42.857 0.00 0.00 0.00 3.51
2176 3173 1.705256 TGATCGCACGTTTACTGACC 58.295 50.000 0.00 0.00 0.00 4.02
2177 3174 1.000052 TGATCGCACGTTTACTGACCA 60.000 47.619 0.00 0.00 0.00 4.02
2178 3175 2.268298 GATCGCACGTTTACTGACCAT 58.732 47.619 0.00 0.00 0.00 3.55
2179 3176 1.424403 TCGCACGTTTACTGACCATG 58.576 50.000 0.00 0.00 0.00 3.66
2180 3177 1.144969 CGCACGTTTACTGACCATGT 58.855 50.000 0.00 0.00 0.00 3.21
2181 3178 2.030096 TCGCACGTTTACTGACCATGTA 60.030 45.455 0.00 0.00 0.00 2.29
2182 3179 2.091588 CGCACGTTTACTGACCATGTAC 59.908 50.000 0.00 0.00 0.00 2.90
2183 3180 3.323243 GCACGTTTACTGACCATGTACT 58.677 45.455 0.00 0.00 0.00 2.73
2184 3181 4.487948 GCACGTTTACTGACCATGTACTA 58.512 43.478 0.00 0.00 0.00 1.82
2185 3182 4.325472 GCACGTTTACTGACCATGTACTAC 59.675 45.833 0.00 0.00 0.00 2.73
2186 3183 5.706916 CACGTTTACTGACCATGTACTACT 58.293 41.667 0.00 0.00 0.00 2.57
2187 3184 5.798934 CACGTTTACTGACCATGTACTACTC 59.201 44.000 0.00 0.00 0.00 2.59
2188 3185 5.709164 ACGTTTACTGACCATGTACTACTCT 59.291 40.000 0.00 0.00 0.00 3.24
2189 3186 6.128063 ACGTTTACTGACCATGTACTACTCTC 60.128 42.308 0.00 0.00 0.00 3.20
2190 3187 6.128090 CGTTTACTGACCATGTACTACTCTCA 60.128 42.308 0.00 0.00 0.00 3.27
2191 3188 7.415318 CGTTTACTGACCATGTACTACTCTCAT 60.415 40.741 0.00 0.00 0.00 2.90
2192 3189 5.843673 ACTGACCATGTACTACTCTCATG 57.156 43.478 0.00 0.00 38.72 3.07
2193 3190 5.510430 ACTGACCATGTACTACTCTCATGA 58.490 41.667 0.00 0.00 40.64 3.07
2194 3191 5.358442 ACTGACCATGTACTACTCTCATGAC 59.642 44.000 0.00 1.90 40.64 3.06
2195 3192 5.261216 TGACCATGTACTACTCTCATGACA 58.739 41.667 0.00 0.00 40.64 3.58
2196 3193 5.358160 TGACCATGTACTACTCTCATGACAG 59.642 44.000 0.00 0.00 40.64 3.51
2197 3194 5.265191 ACCATGTACTACTCTCATGACAGT 58.735 41.667 8.75 8.75 40.64 3.55
2198 3195 6.424032 ACCATGTACTACTCTCATGACAGTA 58.576 40.000 10.05 10.05 40.64 2.74
2199 3196 6.890268 ACCATGTACTACTCTCATGACAGTAA 59.110 38.462 11.40 0.00 40.64 2.24
2200 3197 7.561722 ACCATGTACTACTCTCATGACAGTAAT 59.438 37.037 11.40 5.03 40.64 1.89
2201 3198 9.067986 CCATGTACTACTCTCATGACAGTAATA 57.932 37.037 11.40 4.12 40.64 0.98
2202 3199 9.885934 CATGTACTACTCTCATGACAGTAATAC 57.114 37.037 17.64 17.64 40.64 1.89
2203 3200 9.854668 ATGTACTACTCTCATGACAGTAATACT 57.145 33.333 22.09 11.01 31.83 2.12
2234 3231 9.507280 CTATTGTTCTGCATGTTAATTTAGTGG 57.493 33.333 0.00 0.00 0.00 4.00
2235 3232 5.708948 TGTTCTGCATGTTAATTTAGTGGC 58.291 37.500 0.00 0.00 0.00 5.01
2236 3233 5.242615 TGTTCTGCATGTTAATTTAGTGGCA 59.757 36.000 0.00 0.00 0.00 4.92
2237 3234 5.565592 TCTGCATGTTAATTTAGTGGCAG 57.434 39.130 12.26 12.26 46.49 4.85
2238 3235 5.009631 TCTGCATGTTAATTTAGTGGCAGT 58.990 37.500 15.86 0.00 45.59 4.40
2239 3236 5.058149 TGCATGTTAATTTAGTGGCAGTG 57.942 39.130 4.76 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.876107 GGAACGGAAACATCTACATGACAT 59.124 41.667 0.00 0.00 33.72 3.06
86 87 9.561069 GATATCTTGCTTTCTATTCCTTTACCA 57.439 33.333 0.00 0.00 0.00 3.25
91 92 9.771534 GTAGTGATATCTTGCTTTCTATTCCTT 57.228 33.333 3.98 0.00 0.00 3.36
155 156 2.439507 CCCAGCCAGGTAAGACATACAT 59.560 50.000 0.00 0.00 36.14 2.29
210 211 2.139118 GGCGATTAGTTCTCATGGAGC 58.861 52.381 0.00 0.00 0.00 4.70
288 289 4.447389 GGTTTGTTGTAGCATGCGAAATTT 59.553 37.500 13.01 0.00 0.00 1.82
296 297 5.470098 AGTGAGTTAGGTTTGTTGTAGCATG 59.530 40.000 0.00 0.00 0.00 4.06
338 339 3.545703 ACCAGCATCAGCCAAGTAATAC 58.454 45.455 0.00 0.00 43.56 1.89
387 388 4.153117 GTGATACCGATTGGATCTGAATGC 59.847 45.833 5.81 0.00 39.21 3.56
456 457 4.950050 AGAGTGCGCAAGTTATATAGCTT 58.050 39.130 14.00 6.05 41.68 3.74
485 487 7.072030 CCAAAAGTTCTCTCTACAACATTTCG 58.928 38.462 0.00 0.00 0.00 3.46
520 522 3.181423 TGCCAAGAATACCCCACTTCTTT 60.181 43.478 0.00 0.00 39.15 2.52
539 541 4.370364 TGTCAAAGAAACTTTGAGTGCC 57.630 40.909 21.81 13.37 38.88 5.01
571 573 3.517296 ACCCAATGGACACATGTTACA 57.483 42.857 0.00 0.00 37.40 2.41
688 699 3.239449 TCATATGTTGCCTATCCCTCGT 58.761 45.455 1.90 0.00 0.00 4.18
839 1614 7.387673 CGGTTGCATGATCTTTGGAGTATATTA 59.612 37.037 0.00 0.00 0.00 0.98
948 1723 1.341209 GTTCTCTGCCTTTTTGGTGGG 59.659 52.381 0.00 0.00 38.35 4.61
964 1739 4.511527 CACAAGATAGCATCACCTGTTCT 58.488 43.478 0.00 0.00 0.00 3.01
1087 1862 2.488153 CCAAGTCCGGGATCTTTTCAAC 59.512 50.000 0.00 0.00 0.00 3.18
1137 1912 4.130118 AGCGTTCACTGAGAATGAGTTTT 58.870 39.130 10.62 0.00 44.41 2.43
1146 1921 3.953712 TGGAATAAGCGTTCACTGAGA 57.046 42.857 0.00 0.00 0.00 3.27
1149 1924 3.122937 GCTTGGAATAAGCGTTCACTG 57.877 47.619 0.00 0.00 33.20 3.66
1293 2068 9.464714 ACAATAACATAGTAATTAGTCGAGCAG 57.535 33.333 0.00 0.00 0.00 4.24
1339 2117 5.814705 TGTTTTTGGAAATTAAGCACACAGG 59.185 36.000 0.00 0.00 0.00 4.00
1350 2128 9.612066 ATTCAAGTACATGTGTTTTTGGAAATT 57.388 25.926 9.11 0.00 0.00 1.82
1443 2221 5.463286 CAACAGCAACACATACATCAACAT 58.537 37.500 0.00 0.00 0.00 2.71
1484 2277 0.516001 CACAGCAGCACTTACAGCAG 59.484 55.000 0.00 0.00 0.00 4.24
1485 2278 1.509644 GCACAGCAGCACTTACAGCA 61.510 55.000 0.00 0.00 0.00 4.41
1486 2279 1.208614 GCACAGCAGCACTTACAGC 59.791 57.895 0.00 0.00 0.00 4.40
1487 2280 0.946528 TTGCACAGCAGCACTTACAG 59.053 50.000 0.00 0.00 45.61 2.74
1516 2336 1.077123 CAGCACTTCTACAGCAGCAG 58.923 55.000 0.00 0.00 30.85 4.24
1519 2339 1.664659 GCATCAGCACTTCTACAGCAG 59.335 52.381 0.00 0.00 41.58 4.24
1520 2340 1.277273 AGCATCAGCACTTCTACAGCA 59.723 47.619 0.00 0.00 45.49 4.41
1521 2341 1.664659 CAGCATCAGCACTTCTACAGC 59.335 52.381 0.00 0.00 45.49 4.40
1522 2342 1.664659 GCAGCATCAGCACTTCTACAG 59.335 52.381 0.00 0.00 45.49 2.74
1523 2343 1.277273 AGCAGCATCAGCACTTCTACA 59.723 47.619 0.00 0.00 45.49 2.74
1524 2344 1.664659 CAGCAGCATCAGCACTTCTAC 59.335 52.381 0.00 0.00 45.49 2.59
1526 2346 0.036448 ACAGCAGCATCAGCACTTCT 59.964 50.000 0.00 0.00 45.49 2.85
1527 2347 0.168348 CACAGCAGCATCAGCACTTC 59.832 55.000 0.00 0.00 45.49 3.01
1528 2348 1.863662 GCACAGCAGCATCAGCACTT 61.864 55.000 0.00 0.00 45.49 3.16
1529 2349 2.333417 GCACAGCAGCATCAGCACT 61.333 57.895 0.00 0.00 45.49 4.40
1530 2350 2.137425 TTGCACAGCAGCATCAGCAC 62.137 55.000 0.00 0.00 45.19 4.40
1533 2353 0.109735 CACTTGCACAGCAGCATCAG 60.110 55.000 0.00 0.00 45.19 2.90
1534 2354 1.953772 CACTTGCACAGCAGCATCA 59.046 52.632 0.00 0.00 45.19 3.07
1535 2355 1.443872 GCACTTGCACAGCAGCATC 60.444 57.895 0.00 0.00 45.19 3.91
1536 2356 1.901948 AGCACTTGCACAGCAGCAT 60.902 52.632 3.62 0.00 45.19 3.79
1576 2396 2.255554 CTTGCACAGCAGCAGCAG 59.744 61.111 3.17 0.00 46.54 4.24
1577 2397 2.517638 ACTTGCACAGCAGCAGCA 60.518 55.556 3.17 3.36 46.54 4.41
1578 2398 2.050351 CACTTGCACAGCAGCAGC 60.050 61.111 0.00 0.00 46.54 5.25
1579 2399 2.050351 GCACTTGCACAGCAGCAG 60.050 61.111 0.00 0.00 46.54 4.24
1580 2400 2.517638 AGCACTTGCACAGCAGCA 60.518 55.556 3.62 0.00 45.16 4.41
1581 2401 2.050351 CAGCACTTGCACAGCAGC 60.050 61.111 3.62 6.45 45.16 5.25
1590 2410 1.232621 TACAGCAGCAGCAGCACTTG 61.233 55.000 12.92 4.30 45.49 3.16
1591 2411 0.322277 ATACAGCAGCAGCAGCACTT 60.322 50.000 12.92 0.00 45.49 3.16
1592 2412 0.538584 TATACAGCAGCAGCAGCACT 59.461 50.000 12.92 0.00 45.49 4.40
1593 2413 1.329906 CTTATACAGCAGCAGCAGCAC 59.670 52.381 12.92 0.00 45.49 4.40
1594 2414 1.065926 ACTTATACAGCAGCAGCAGCA 60.066 47.619 12.92 0.00 45.49 4.41
1595 2415 1.329906 CACTTATACAGCAGCAGCAGC 59.670 52.381 3.17 0.46 45.49 5.25
1596 2416 1.329906 GCACTTATACAGCAGCAGCAG 59.670 52.381 3.17 0.00 45.49 4.24
1597 2417 1.065926 AGCACTTATACAGCAGCAGCA 60.066 47.619 3.17 0.00 45.49 4.41
1598 2418 1.329906 CAGCACTTATACAGCAGCAGC 59.670 52.381 0.00 0.00 42.56 5.25
1850 2847 1.535015 GGAATTCGACTGAGAGGCTCG 60.535 57.143 9.22 0.00 32.35 5.03
1999 2996 3.065786 CGACGGCACTAGACCATTACTTA 59.934 47.826 0.00 0.00 0.00 2.24
2000 2997 2.159282 CGACGGCACTAGACCATTACTT 60.159 50.000 0.00 0.00 0.00 2.24
2001 2998 1.404391 CGACGGCACTAGACCATTACT 59.596 52.381 0.00 0.00 0.00 2.24
2002 2999 1.402968 TCGACGGCACTAGACCATTAC 59.597 52.381 0.00 0.00 0.00 1.89
2003 3000 1.753930 TCGACGGCACTAGACCATTA 58.246 50.000 0.00 0.00 0.00 1.90
2004 3001 1.112113 ATCGACGGCACTAGACCATT 58.888 50.000 0.00 0.00 0.00 3.16
2005 3002 1.977056 TATCGACGGCACTAGACCAT 58.023 50.000 0.00 0.00 0.00 3.55
2006 3003 1.753930 TTATCGACGGCACTAGACCA 58.246 50.000 0.00 0.00 0.00 4.02
2007 3004 2.857592 TTTATCGACGGCACTAGACC 57.142 50.000 0.00 0.00 0.00 3.85
2008 3005 4.357142 TCAATTTATCGACGGCACTAGAC 58.643 43.478 0.00 0.00 0.00 2.59
2009 3006 4.642445 TCAATTTATCGACGGCACTAGA 57.358 40.909 0.00 0.00 0.00 2.43
2010 3007 4.318121 GCTTCAATTTATCGACGGCACTAG 60.318 45.833 0.00 0.00 0.00 2.57
2011 3008 3.554324 GCTTCAATTTATCGACGGCACTA 59.446 43.478 0.00 0.00 0.00 2.74
2012 3009 2.351726 GCTTCAATTTATCGACGGCACT 59.648 45.455 0.00 0.00 0.00 4.40
2013 3010 2.095213 TGCTTCAATTTATCGACGGCAC 59.905 45.455 0.00 0.00 0.00 5.01
2014 3011 2.351455 TGCTTCAATTTATCGACGGCA 58.649 42.857 0.00 0.00 0.00 5.69
2015 3012 3.398954 TTGCTTCAATTTATCGACGGC 57.601 42.857 0.00 0.00 0.00 5.68
2016 3013 3.725740 GCATTGCTTCAATTTATCGACGG 59.274 43.478 0.16 0.00 31.05 4.79
2017 3014 3.725740 GGCATTGCTTCAATTTATCGACG 59.274 43.478 8.82 0.00 31.05 5.12
2018 3015 4.500477 GTGGCATTGCTTCAATTTATCGAC 59.500 41.667 8.82 0.00 31.05 4.20
2019 3016 4.439974 GGTGGCATTGCTTCAATTTATCGA 60.440 41.667 8.82 0.00 31.05 3.59
2020 3017 3.798337 GGTGGCATTGCTTCAATTTATCG 59.202 43.478 8.82 0.00 31.05 2.92
2021 3018 4.567959 GTGGTGGCATTGCTTCAATTTATC 59.432 41.667 8.82 0.00 31.05 1.75
2022 3019 4.506758 GTGGTGGCATTGCTTCAATTTAT 58.493 39.130 8.82 0.00 31.05 1.40
2023 3020 3.306641 GGTGGTGGCATTGCTTCAATTTA 60.307 43.478 8.82 0.00 31.05 1.40
2024 3021 2.550639 GGTGGTGGCATTGCTTCAATTT 60.551 45.455 8.82 0.00 31.05 1.82
2025 3022 1.002315 GGTGGTGGCATTGCTTCAATT 59.998 47.619 8.82 0.00 31.05 2.32
2026 3023 0.609662 GGTGGTGGCATTGCTTCAAT 59.390 50.000 8.82 0.00 34.04 2.57
2027 3024 0.758310 TGGTGGTGGCATTGCTTCAA 60.758 50.000 8.82 0.00 0.00 2.69
2028 3025 0.542467 ATGGTGGTGGCATTGCTTCA 60.542 50.000 8.82 2.12 0.00 3.02
2029 3026 0.609662 AATGGTGGTGGCATTGCTTC 59.390 50.000 8.82 2.10 0.00 3.86
2030 3027 1.058284 AAATGGTGGTGGCATTGCTT 58.942 45.000 8.82 0.00 0.00 3.91
2031 3028 1.058284 AAAATGGTGGTGGCATTGCT 58.942 45.000 8.82 0.00 0.00 3.91
2032 3029 2.758736 TAAAATGGTGGTGGCATTGC 57.241 45.000 0.00 0.00 0.00 3.56
2033 3030 4.468765 TCATAAAATGGTGGTGGCATTG 57.531 40.909 0.00 0.00 0.00 2.82
2034 3031 4.531732 ACTTCATAAAATGGTGGTGGCATT 59.468 37.500 0.00 0.00 0.00 3.56
2035 3032 4.081531 CACTTCATAAAATGGTGGTGGCAT 60.082 41.667 0.00 0.00 0.00 4.40
2036 3033 3.257873 CACTTCATAAAATGGTGGTGGCA 59.742 43.478 0.00 0.00 0.00 4.92
2037 3034 3.848726 CACTTCATAAAATGGTGGTGGC 58.151 45.455 0.00 0.00 0.00 5.01
2038 3035 3.511146 AGCACTTCATAAAATGGTGGTGG 59.489 43.478 0.00 0.00 37.27 4.61
2039 3036 4.789012 AGCACTTCATAAAATGGTGGTG 57.211 40.909 0.00 0.00 37.27 4.17
2040 3037 4.588528 ACAAGCACTTCATAAAATGGTGGT 59.411 37.500 0.00 0.00 39.73 4.16
2041 3038 4.925054 CACAAGCACTTCATAAAATGGTGG 59.075 41.667 0.00 0.00 0.00 4.61
2042 3039 5.531634 ACACAAGCACTTCATAAAATGGTG 58.468 37.500 0.00 0.00 0.00 4.17
2043 3040 5.536161 AGACACAAGCACTTCATAAAATGGT 59.464 36.000 0.00 0.00 0.00 3.55
2044 3041 6.017400 AGACACAAGCACTTCATAAAATGG 57.983 37.500 0.00 0.00 0.00 3.16
2045 3042 6.129009 GCAAGACACAAGCACTTCATAAAATG 60.129 38.462 0.00 0.00 0.00 2.32
2046 3043 5.922544 GCAAGACACAAGCACTTCATAAAAT 59.077 36.000 0.00 0.00 0.00 1.82
2047 3044 5.067674 AGCAAGACACAAGCACTTCATAAAA 59.932 36.000 0.00 0.00 0.00 1.52
2048 3045 4.580167 AGCAAGACACAAGCACTTCATAAA 59.420 37.500 0.00 0.00 0.00 1.40
2049 3046 4.136796 AGCAAGACACAAGCACTTCATAA 58.863 39.130 0.00 0.00 0.00 1.90
2050 3047 3.743521 AGCAAGACACAAGCACTTCATA 58.256 40.909 0.00 0.00 0.00 2.15
2051 3048 2.579873 AGCAAGACACAAGCACTTCAT 58.420 42.857 0.00 0.00 0.00 2.57
2052 3049 2.042686 AGCAAGACACAAGCACTTCA 57.957 45.000 0.00 0.00 0.00 3.02
2053 3050 3.427161 AAAGCAAGACACAAGCACTTC 57.573 42.857 0.00 0.00 0.00 3.01
2054 3051 5.520376 AATAAAGCAAGACACAAGCACTT 57.480 34.783 0.00 0.00 0.00 3.16
2055 3052 5.507985 GGAAATAAAGCAAGACACAAGCACT 60.508 40.000 0.00 0.00 0.00 4.40
2056 3053 4.681483 GGAAATAAAGCAAGACACAAGCAC 59.319 41.667 0.00 0.00 0.00 4.40
2057 3054 4.261994 GGGAAATAAAGCAAGACACAAGCA 60.262 41.667 0.00 0.00 0.00 3.91
2058 3055 4.237724 GGGAAATAAAGCAAGACACAAGC 58.762 43.478 0.00 0.00 0.00 4.01
2059 3056 5.452078 TGGGAAATAAAGCAAGACACAAG 57.548 39.130 0.00 0.00 0.00 3.16
2060 3057 5.538053 TCATGGGAAATAAAGCAAGACACAA 59.462 36.000 0.00 0.00 0.00 3.33
2061 3058 5.076182 TCATGGGAAATAAAGCAAGACACA 58.924 37.500 0.00 0.00 0.00 3.72
2062 3059 5.643379 TCATGGGAAATAAAGCAAGACAC 57.357 39.130 0.00 0.00 0.00 3.67
2063 3060 6.855763 ATTCATGGGAAATAAAGCAAGACA 57.144 33.333 0.00 0.00 36.43 3.41
2064 3061 7.063780 CACAATTCATGGGAAATAAAGCAAGAC 59.936 37.037 0.00 0.00 36.43 3.01
2065 3062 7.098477 CACAATTCATGGGAAATAAAGCAAGA 58.902 34.615 0.00 0.00 36.43 3.02
2066 3063 6.875195 ACACAATTCATGGGAAATAAAGCAAG 59.125 34.615 0.00 0.00 36.43 4.01
2067 3064 6.767456 ACACAATTCATGGGAAATAAAGCAA 58.233 32.000 0.00 0.00 36.43 3.91
2068 3065 6.357579 ACACAATTCATGGGAAATAAAGCA 57.642 33.333 0.00 0.00 36.43 3.91
2069 3066 8.947055 ATAACACAATTCATGGGAAATAAAGC 57.053 30.769 0.00 0.00 36.43 3.51
2071 3068 9.160496 GCAATAACACAATTCATGGGAAATAAA 57.840 29.630 0.00 0.00 36.43 1.40
2072 3069 8.316946 TGCAATAACACAATTCATGGGAAATAA 58.683 29.630 0.00 0.00 36.43 1.40
2073 3070 7.845037 TGCAATAACACAATTCATGGGAAATA 58.155 30.769 0.00 0.00 36.43 1.40
2074 3071 6.709281 TGCAATAACACAATTCATGGGAAAT 58.291 32.000 0.00 0.00 36.43 2.17
2075 3072 6.106648 TGCAATAACACAATTCATGGGAAA 57.893 33.333 0.00 0.00 36.43 3.13
2076 3073 5.245751 ACTGCAATAACACAATTCATGGGAA 59.754 36.000 0.00 0.00 35.35 3.97
2077 3074 4.771577 ACTGCAATAACACAATTCATGGGA 59.228 37.500 0.00 0.00 35.35 4.37
2078 3075 5.075858 ACTGCAATAACACAATTCATGGG 57.924 39.130 0.00 0.00 38.89 4.00
2079 3076 8.434661 GTTTAACTGCAATAACACAATTCATGG 58.565 33.333 0.00 0.00 0.00 3.66
2080 3077 9.195411 AGTTTAACTGCAATAACACAATTCATG 57.805 29.630 0.00 0.00 0.00 3.07
2081 3078 9.762933 AAGTTTAACTGCAATAACACAATTCAT 57.237 25.926 0.00 0.00 0.00 2.57
2093 3090 8.082242 GGTGTGAGATTTAAGTTTAACTGCAAT 58.918 33.333 0.00 0.09 0.00 3.56
2094 3091 7.422399 GGTGTGAGATTTAAGTTTAACTGCAA 58.578 34.615 0.00 0.00 0.00 4.08
2095 3092 6.293190 CGGTGTGAGATTTAAGTTTAACTGCA 60.293 38.462 0.00 0.00 0.00 4.41
2096 3093 6.077838 CGGTGTGAGATTTAAGTTTAACTGC 58.922 40.000 0.00 0.00 0.00 4.40
2097 3094 6.073222 AGCGGTGTGAGATTTAAGTTTAACTG 60.073 38.462 0.00 0.00 0.00 3.16
2098 3095 5.995897 AGCGGTGTGAGATTTAAGTTTAACT 59.004 36.000 0.00 0.00 0.00 2.24
2099 3096 6.237313 AGCGGTGTGAGATTTAAGTTTAAC 57.763 37.500 0.00 0.00 0.00 2.01
2100 3097 7.441760 TGTTAGCGGTGTGAGATTTAAGTTTAA 59.558 33.333 0.00 0.00 0.00 1.52
2101 3098 6.930164 TGTTAGCGGTGTGAGATTTAAGTTTA 59.070 34.615 0.00 0.00 0.00 2.01
2102 3099 5.761234 TGTTAGCGGTGTGAGATTTAAGTTT 59.239 36.000 0.00 0.00 0.00 2.66
2103 3100 5.302360 TGTTAGCGGTGTGAGATTTAAGTT 58.698 37.500 0.00 0.00 0.00 2.66
2104 3101 4.890088 TGTTAGCGGTGTGAGATTTAAGT 58.110 39.130 0.00 0.00 0.00 2.24
2105 3102 6.250819 CAATGTTAGCGGTGTGAGATTTAAG 58.749 40.000 0.00 0.00 0.00 1.85
2106 3103 5.391523 GCAATGTTAGCGGTGTGAGATTTAA 60.392 40.000 0.00 0.00 0.00 1.52
2107 3104 4.094294 GCAATGTTAGCGGTGTGAGATTTA 59.906 41.667 0.00 0.00 0.00 1.40
2108 3105 3.119849 GCAATGTTAGCGGTGTGAGATTT 60.120 43.478 0.00 0.00 0.00 2.17
2109 3106 2.420022 GCAATGTTAGCGGTGTGAGATT 59.580 45.455 0.00 0.00 0.00 2.40
2110 3107 2.009774 GCAATGTTAGCGGTGTGAGAT 58.990 47.619 0.00 0.00 0.00 2.75
2111 3108 1.001974 AGCAATGTTAGCGGTGTGAGA 59.998 47.619 0.00 0.00 37.01 3.27
2112 3109 1.442769 AGCAATGTTAGCGGTGTGAG 58.557 50.000 0.00 0.00 37.01 3.51
2113 3110 1.804151 GAAGCAATGTTAGCGGTGTGA 59.196 47.619 0.00 0.00 37.01 3.58
2114 3111 1.535028 TGAAGCAATGTTAGCGGTGTG 59.465 47.619 0.00 0.00 37.01 3.82
2115 3112 1.890876 TGAAGCAATGTTAGCGGTGT 58.109 45.000 0.00 0.00 37.01 4.16
2116 3113 2.223340 GGATGAAGCAATGTTAGCGGTG 60.223 50.000 0.00 0.00 37.01 4.94
2117 3114 2.017049 GGATGAAGCAATGTTAGCGGT 58.983 47.619 0.00 0.00 37.01 5.68
2118 3115 1.334869 GGGATGAAGCAATGTTAGCGG 59.665 52.381 0.00 0.00 37.01 5.52
2119 3116 2.016318 TGGGATGAAGCAATGTTAGCG 58.984 47.619 0.00 0.00 37.01 4.26
2120 3117 3.019564 ACTGGGATGAAGCAATGTTAGC 58.980 45.455 0.00 0.00 0.00 3.09
2121 3118 3.379372 CCACTGGGATGAAGCAATGTTAG 59.621 47.826 0.00 0.00 35.59 2.34
2122 3119 3.010027 TCCACTGGGATGAAGCAATGTTA 59.990 43.478 0.00 0.00 38.64 2.41
2123 3120 2.173519 CCACTGGGATGAAGCAATGTT 58.826 47.619 0.00 0.00 35.59 2.71
2124 3121 1.355381 TCCACTGGGATGAAGCAATGT 59.645 47.619 0.00 0.00 38.64 2.71
2125 3122 2.133281 TCCACTGGGATGAAGCAATG 57.867 50.000 0.00 0.00 38.64 2.82
2126 3123 2.450476 GTTCCACTGGGATGAAGCAAT 58.550 47.619 0.00 0.00 44.48 3.56
2127 3124 1.547675 GGTTCCACTGGGATGAAGCAA 60.548 52.381 0.00 0.00 44.48 3.91
2128 3125 0.038166 GGTTCCACTGGGATGAAGCA 59.962 55.000 0.00 0.00 44.48 3.91
2129 3126 1.026718 CGGTTCCACTGGGATGAAGC 61.027 60.000 0.00 0.00 44.48 3.86
2130 3127 1.026718 GCGGTTCCACTGGGATGAAG 61.027 60.000 0.00 0.00 44.48 3.02
2131 3128 1.002624 GCGGTTCCACTGGGATGAA 60.003 57.895 0.00 0.00 44.48 2.57
2132 3129 2.220586 TGCGGTTCCACTGGGATGA 61.221 57.895 0.00 0.00 44.48 2.92
2133 3130 2.040544 GTGCGGTTCCACTGGGATG 61.041 63.158 0.00 0.00 44.48 3.51
2134 3131 2.063015 TTGTGCGGTTCCACTGGGAT 62.063 55.000 0.00 0.00 44.48 3.85
2135 3132 2.272230 TTTGTGCGGTTCCACTGGGA 62.272 55.000 0.00 0.00 43.03 4.37
2136 3133 1.178534 ATTTGTGCGGTTCCACTGGG 61.179 55.000 0.00 0.00 36.68 4.45
2137 3134 0.673437 AATTTGTGCGGTTCCACTGG 59.327 50.000 0.00 0.00 36.68 4.00
2138 3135 2.126467 CAAATTTGTGCGGTTCCACTG 58.874 47.619 10.15 0.00 36.68 3.66
2139 3136 2.028130 TCAAATTTGTGCGGTTCCACT 58.972 42.857 17.47 0.00 36.68 4.00
2140 3137 2.500509 TCAAATTTGTGCGGTTCCAC 57.499 45.000 17.47 0.00 36.28 4.02
2141 3138 2.351253 CGATCAAATTTGTGCGGTTCCA 60.351 45.455 17.47 0.00 0.00 3.53
2142 3139 2.250188 CGATCAAATTTGTGCGGTTCC 58.750 47.619 17.47 0.06 0.00 3.62
2143 3140 1.648681 GCGATCAAATTTGTGCGGTTC 59.351 47.619 25.05 12.83 0.00 3.62
2144 3141 1.000827 TGCGATCAAATTTGTGCGGTT 60.001 42.857 25.05 6.80 0.00 4.44
2145 3142 0.595588 TGCGATCAAATTTGTGCGGT 59.404 45.000 25.05 8.97 0.00 5.68
2146 3143 0.984109 GTGCGATCAAATTTGTGCGG 59.016 50.000 25.05 13.58 0.00 5.69
2147 3144 0.629767 CGTGCGATCAAATTTGTGCG 59.370 50.000 22.05 22.05 0.00 5.34
2148 3145 1.685302 ACGTGCGATCAAATTTGTGC 58.315 45.000 17.47 18.37 0.00 4.57
2149 3146 4.909305 AGTAAACGTGCGATCAAATTTGTG 59.091 37.500 17.47 10.07 0.00 3.33
2150 3147 4.909305 CAGTAAACGTGCGATCAAATTTGT 59.091 37.500 17.47 5.61 0.00 2.83
2151 3148 5.058008 GTCAGTAAACGTGCGATCAAATTTG 59.942 40.000 12.15 12.15 0.00 2.32
2152 3149 5.144359 GTCAGTAAACGTGCGATCAAATTT 58.856 37.500 0.00 0.00 0.00 1.82
2153 3150 4.378046 GGTCAGTAAACGTGCGATCAAATT 60.378 41.667 0.00 0.00 0.00 1.82
2154 3151 3.124636 GGTCAGTAAACGTGCGATCAAAT 59.875 43.478 0.00 0.00 0.00 2.32
2155 3152 2.477375 GGTCAGTAAACGTGCGATCAAA 59.523 45.455 0.00 0.00 0.00 2.69
2156 3153 2.063266 GGTCAGTAAACGTGCGATCAA 58.937 47.619 0.00 0.00 0.00 2.57
2157 3154 1.000052 TGGTCAGTAAACGTGCGATCA 60.000 47.619 0.00 0.00 0.00 2.92
2158 3155 1.705256 TGGTCAGTAAACGTGCGATC 58.295 50.000 0.00 0.00 0.00 3.69
2159 3156 1.999735 CATGGTCAGTAAACGTGCGAT 59.000 47.619 0.00 0.00 0.00 4.58
2160 3157 1.269883 ACATGGTCAGTAAACGTGCGA 60.270 47.619 0.00 0.00 0.00 5.10
2161 3158 1.144969 ACATGGTCAGTAAACGTGCG 58.855 50.000 0.00 0.00 0.00 5.34
2162 3159 3.323243 AGTACATGGTCAGTAAACGTGC 58.677 45.455 0.00 0.00 0.00 5.34
2163 3160 5.706916 AGTAGTACATGGTCAGTAAACGTG 58.293 41.667 2.52 0.00 0.00 4.49
2164 3161 5.709164 AGAGTAGTACATGGTCAGTAAACGT 59.291 40.000 2.52 0.00 0.00 3.99
2165 3162 6.128090 TGAGAGTAGTACATGGTCAGTAAACG 60.128 42.308 2.52 0.00 0.00 3.60
2166 3163 7.154435 TGAGAGTAGTACATGGTCAGTAAAC 57.846 40.000 2.52 0.00 0.00 2.01
2167 3164 7.614192 TCATGAGAGTAGTACATGGTCAGTAAA 59.386 37.037 2.52 0.00 40.86 2.01
2168 3165 7.067129 GTCATGAGAGTAGTACATGGTCAGTAA 59.933 40.741 0.00 0.00 40.86 2.24
2169 3166 6.542735 GTCATGAGAGTAGTACATGGTCAGTA 59.457 42.308 0.00 0.00 40.86 2.74
2170 3167 5.358442 GTCATGAGAGTAGTACATGGTCAGT 59.642 44.000 0.00 0.00 40.86 3.41
2171 3168 5.358160 TGTCATGAGAGTAGTACATGGTCAG 59.642 44.000 0.00 0.00 40.86 3.51
2172 3169 5.261216 TGTCATGAGAGTAGTACATGGTCA 58.739 41.667 0.00 0.22 40.86 4.02
2173 3170 5.358442 ACTGTCATGAGAGTAGTACATGGTC 59.642 44.000 23.04 0.00 40.86 4.02
2174 3171 5.265191 ACTGTCATGAGAGTAGTACATGGT 58.735 41.667 23.04 0.00 40.86 3.55
2175 3172 5.843673 ACTGTCATGAGAGTAGTACATGG 57.156 43.478 23.04 0.00 40.86 3.66
2176 3173 9.885934 GTATTACTGTCATGAGAGTAGTACATG 57.114 37.037 35.62 12.35 43.46 3.21
2177 3174 9.854668 AGTATTACTGTCATGAGAGTAGTACAT 57.145 33.333 38.27 28.84 44.90 2.29
2208 3205 9.507280 CCACTAAATTAACATGCAGAACAATAG 57.493 33.333 0.00 0.00 0.00 1.73
2209 3206 7.973388 GCCACTAAATTAACATGCAGAACAATA 59.027 33.333 0.00 0.00 0.00 1.90
2210 3207 6.813152 GCCACTAAATTAACATGCAGAACAAT 59.187 34.615 0.00 0.00 0.00 2.71
2211 3208 6.155827 GCCACTAAATTAACATGCAGAACAA 58.844 36.000 0.00 0.00 0.00 2.83
2212 3209 5.242615 TGCCACTAAATTAACATGCAGAACA 59.757 36.000 0.00 0.00 0.00 3.18
2213 3210 5.708948 TGCCACTAAATTAACATGCAGAAC 58.291 37.500 0.00 0.00 0.00 3.01
2214 3211 5.476599 ACTGCCACTAAATTAACATGCAGAA 59.523 36.000 19.73 0.00 45.84 3.02
2215 3212 5.009631 ACTGCCACTAAATTAACATGCAGA 58.990 37.500 19.73 0.00 45.84 4.26
2217 3214 5.058149 CACTGCCACTAAATTAACATGCA 57.942 39.130 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.