Multiple sequence alignment - TraesCS1D01G112500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G112500 chr1D 100.000 4527 0 0 1 4527 108263701 108259175 0.000000e+00 8360.0
1 TraesCS1D01G112500 chr1D 100.000 2472 0 0 5119 7590 108258583 108256112 0.000000e+00 4566.0
2 TraesCS1D01G112500 chr1D 99.442 538 3 0 1 538 460320656 460321193 0.000000e+00 977.0
3 TraesCS1D01G112500 chr1A 94.470 2152 92 13 745 2877 111154073 111151930 0.000000e+00 3290.0
4 TraesCS1D01G112500 chr1A 95.032 1550 67 4 2955 4503 423920730 423919190 0.000000e+00 2427.0
5 TraesCS1D01G112500 chr1A 94.010 1536 67 14 6000 7530 111151656 111150141 0.000000e+00 2303.0
6 TraesCS1D01G112500 chr1A 92.718 206 4 4 538 733 111154254 111154050 3.470000e-73 287.0
7 TraesCS1D01G112500 chr1A 98.113 53 1 0 7538 7590 111150100 111150048 8.110000e-15 93.5
8 TraesCS1D01G112500 chr1A 89.831 59 6 0 1230 1288 121881634 121881692 8.170000e-10 76.8
9 TraesCS1D01G112500 chr1B 92.215 2158 99 23 745 2874 158516276 158518392 0.000000e+00 2990.0
10 TraesCS1D01G112500 chr1B 90.822 1351 90 14 5780 7129 158518389 158519706 0.000000e+00 1777.0
11 TraesCS1D01G112500 chr1B 97.340 188 4 1 7275 7461 158519944 158520131 1.230000e-82 318.0
12 TraesCS1D01G112500 chr1B 97.143 70 2 0 7461 7530 158520157 158520226 1.340000e-22 119.0
13 TraesCS1D01G112500 chr2D 96.679 1566 47 3 2954 4517 392699957 392698395 0.000000e+00 2599.0
14 TraesCS1D01G112500 chr2D 95.429 1575 69 3 2955 4527 293681627 293680054 0.000000e+00 2507.0
15 TraesCS1D01G112500 chr2D 92.405 158 7 3 2005 2160 67561288 67561134 3.570000e-53 220.0
16 TraesCS1D01G112500 chr2D 95.652 92 4 0 2863 2954 433984747 433984838 1.710000e-31 148.0
17 TraesCS1D01G112500 chr4D 95.984 1519 54 6 2995 4507 301753058 301751541 0.000000e+00 2460.0
18 TraesCS1D01G112500 chr4D 97.797 590 12 1 5142 5731 432422605 432422017 0.000000e+00 1016.0
19 TraesCS1D01G112500 chr4D 99.255 537 4 0 1 537 19680003 19679467 0.000000e+00 970.0
20 TraesCS1D01G112500 chr4D 99.255 537 4 0 1 537 488033141 488033677 0.000000e+00 970.0
21 TraesCS1D01G112500 chr4D 92.079 101 5 2 2856 2954 270678652 270678553 1.030000e-28 139.0
22 TraesCS1D01G112500 chr4D 86.792 106 12 2 2859 2963 387048606 387048502 4.810000e-22 117.0
23 TraesCS1D01G112500 chr4D 78.767 146 31 0 1740 1885 7798690 7798835 1.740000e-16 99.0
24 TraesCS1D01G112500 chr7D 94.586 1570 82 3 2955 4522 451194356 451195924 0.000000e+00 2425.0
25 TraesCS1D01G112500 chr7D 95.065 1540 74 2 2955 4492 310992898 310994437 0.000000e+00 2422.0
26 TraesCS1D01G112500 chr7D 99.258 539 3 1 1 538 101142244 101141706 0.000000e+00 972.0
27 TraesCS1D01G112500 chr7D 99.076 541 4 1 1 541 89273198 89273737 0.000000e+00 970.0
28 TraesCS1D01G112500 chr7D 94.862 545 24 2 5182 5726 431883001 431883541 0.000000e+00 848.0
29 TraesCS1D01G112500 chr7D 89.326 178 10 5 1989 2160 42644766 42644592 1.660000e-51 215.0
30 TraesCS1D01G112500 chr7D 93.750 96 5 1 2869 2964 581296264 581296358 7.940000e-30 143.0
31 TraesCS1D01G112500 chr7D 93.220 59 4 0 1230 1288 66989136 66989194 3.770000e-13 87.9
32 TraesCS1D01G112500 chr3A 94.794 1556 76 5 2955 4508 746139829 746138277 0.000000e+00 2420.0
33 TraesCS1D01G112500 chr3A 95.556 90 3 1 2873 2962 36857910 36857822 7.940000e-30 143.0
34 TraesCS1D01G112500 chr2A 93.968 1575 89 5 2955 4527 503465132 503463562 0.000000e+00 2377.0
35 TraesCS1D01G112500 chr2A 89.809 628 24 6 5119 5731 503463393 503462791 0.000000e+00 769.0
36 TraesCS1D01G112500 chr2A 93.082 159 8 2 2002 2160 66799843 66799998 5.920000e-56 230.0
37 TraesCS1D01G112500 chr2A 97.701 87 1 1 5690 5775 428143103 428143189 1.710000e-31 148.0
38 TraesCS1D01G112500 chr2A 87.719 57 7 0 1232 1288 642961931 642961987 4.920000e-07 67.6
39 TraesCS1D01G112500 chr5A 94.125 1566 79 6 2953 4517 126268806 126270359 0.000000e+00 2370.0
40 TraesCS1D01G112500 chr5A 90.741 162 11 3 1997 2158 246820222 246820065 5.970000e-51 213.0
41 TraesCS1D01G112500 chr6D 95.759 613 26 0 5119 5731 178001139 178000527 0.000000e+00 989.0
42 TraesCS1D01G112500 chr6D 99.255 537 4 0 1 537 210880606 210881142 0.000000e+00 970.0
43 TraesCS1D01G112500 chr3D 99.441 537 3 0 1 537 491628290 491627754 0.000000e+00 976.0
44 TraesCS1D01G112500 chr3D 99.441 537 2 1 1 537 297460846 297461381 0.000000e+00 974.0
45 TraesCS1D01G112500 chr3D 99.257 538 3 1 1 538 288118469 288119005 0.000000e+00 970.0
46 TraesCS1D01G112500 chr3D 94.943 613 31 0 5119 5731 647245 646633 0.000000e+00 961.0
47 TraesCS1D01G112500 chr3D 94.454 613 29 4 5119 5731 146057972 146058579 0.000000e+00 939.0
48 TraesCS1D01G112500 chr3D 92.157 102 5 2 2863 2962 129677992 129678092 2.860000e-29 141.0
49 TraesCS1D01G112500 chr3D 92.079 101 6 2 2871 2970 255449929 255449830 2.860000e-29 141.0
50 TraesCS1D01G112500 chr3D 83.448 145 12 6 1208 1341 506707184 506707327 2.880000e-24 124.0
51 TraesCS1D01G112500 chr6A 94.935 612 31 0 5120 5731 520839761 520839150 0.000000e+00 959.0
52 TraesCS1D01G112500 chr6A 94.780 613 29 1 5119 5731 100316627 100316018 0.000000e+00 952.0
53 TraesCS1D01G112500 chr6A 98.810 84 1 0 2871 2954 478526475 478526392 4.740000e-32 150.0
54 TraesCS1D01G112500 chr6A 95.699 93 3 1 2870 2962 447160942 447160851 1.710000e-31 148.0
55 TraesCS1D01G112500 chr7A 91.379 638 54 1 5119 5756 314423781 314423145 0.000000e+00 872.0
56 TraesCS1D01G112500 chr7A 84.548 343 11 12 5475 5775 269961192 269961534 1.240000e-77 302.0
57 TraesCS1D01G112500 chr7A 83.904 292 18 2 5513 5775 398930979 398930688 1.260000e-62 252.0
58 TraesCS1D01G112500 chr7A 78.646 384 35 7 5438 5775 398928504 398928122 2.150000e-50 211.0
59 TraesCS1D01G112500 chr7A 86.957 184 18 5 1984 2166 493113305 493113483 1.290000e-47 202.0
60 TraesCS1D01G112500 chr7A 80.195 308 13 10 5513 5775 514822142 514821838 3.620000e-43 187.0
61 TraesCS1D01G112500 chr7A 83.645 214 5 11 5589 5775 1928763 1928973 2.820000e-39 174.0
62 TraesCS1D01G112500 chr7A 90.476 105 7 3 2868 2969 608509221 608509117 1.330000e-27 135.0
63 TraesCS1D01G112500 chr4A 91.111 630 50 4 5119 5747 583752505 583751881 0.000000e+00 848.0
64 TraesCS1D01G112500 chr4A 92.357 157 9 2 2005 2161 363744551 363744704 3.570000e-53 220.0
65 TraesCS1D01G112500 chr4A 77.397 146 33 0 1740 1885 595658527 595658672 3.770000e-13 87.9
66 TraesCS1D01G112500 chr4A 91.525 59 5 0 1230 1288 28272964 28272906 1.760000e-11 82.4
67 TraesCS1D01G112500 chr5B 90.643 171 9 6 1997 2167 176588385 176588222 3.570000e-53 220.0
68 TraesCS1D01G112500 chr4B 79.452 146 30 0 1740 1885 13998953 13998808 3.750000e-18 104.0
69 TraesCS1D01G112500 chrUn 81.739 115 8 1 1230 1344 391724895 391724794 4.880000e-12 84.2
70 TraesCS1D01G112500 chr7B 81.739 115 8 1 1230 1344 553229571 553229470 4.880000e-12 84.2
71 TraesCS1D01G112500 chr2B 80.870 115 9 1 1230 1344 621182592 621182491 2.270000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G112500 chr1D 108256112 108263701 7589 True 6463.000 8360 100.00000 1 7590 2 chr1D.!!$R1 7589
1 TraesCS1D01G112500 chr1D 460320656 460321193 537 False 977.000 977 99.44200 1 538 1 chr1D.!!$F1 537
2 TraesCS1D01G112500 chr1A 423919190 423920730 1540 True 2427.000 2427 95.03200 2955 4503 1 chr1A.!!$R1 1548
3 TraesCS1D01G112500 chr1A 111150048 111154254 4206 True 1493.375 3290 94.82775 538 7590 4 chr1A.!!$R2 7052
4 TraesCS1D01G112500 chr1B 158516276 158520226 3950 False 1301.000 2990 94.38000 745 7530 4 chr1B.!!$F1 6785
5 TraesCS1D01G112500 chr2D 392698395 392699957 1562 True 2599.000 2599 96.67900 2954 4517 1 chr2D.!!$R3 1563
6 TraesCS1D01G112500 chr2D 293680054 293681627 1573 True 2507.000 2507 95.42900 2955 4527 1 chr2D.!!$R2 1572
7 TraesCS1D01G112500 chr4D 301751541 301753058 1517 True 2460.000 2460 95.98400 2995 4507 1 chr4D.!!$R3 1512
8 TraesCS1D01G112500 chr4D 432422017 432422605 588 True 1016.000 1016 97.79700 5142 5731 1 chr4D.!!$R5 589
9 TraesCS1D01G112500 chr4D 19679467 19680003 536 True 970.000 970 99.25500 1 537 1 chr4D.!!$R1 536
10 TraesCS1D01G112500 chr4D 488033141 488033677 536 False 970.000 970 99.25500 1 537 1 chr4D.!!$F2 536
11 TraesCS1D01G112500 chr7D 451194356 451195924 1568 False 2425.000 2425 94.58600 2955 4522 1 chr7D.!!$F5 1567
12 TraesCS1D01G112500 chr7D 310992898 310994437 1539 False 2422.000 2422 95.06500 2955 4492 1 chr7D.!!$F3 1537
13 TraesCS1D01G112500 chr7D 101141706 101142244 538 True 972.000 972 99.25800 1 538 1 chr7D.!!$R2 537
14 TraesCS1D01G112500 chr7D 89273198 89273737 539 False 970.000 970 99.07600 1 541 1 chr7D.!!$F2 540
15 TraesCS1D01G112500 chr7D 431883001 431883541 540 False 848.000 848 94.86200 5182 5726 1 chr7D.!!$F4 544
16 TraesCS1D01G112500 chr3A 746138277 746139829 1552 True 2420.000 2420 94.79400 2955 4508 1 chr3A.!!$R2 1553
17 TraesCS1D01G112500 chr2A 503462791 503465132 2341 True 1573.000 2377 91.88850 2955 5731 2 chr2A.!!$R1 2776
18 TraesCS1D01G112500 chr5A 126268806 126270359 1553 False 2370.000 2370 94.12500 2953 4517 1 chr5A.!!$F1 1564
19 TraesCS1D01G112500 chr6D 178000527 178001139 612 True 989.000 989 95.75900 5119 5731 1 chr6D.!!$R1 612
20 TraesCS1D01G112500 chr6D 210880606 210881142 536 False 970.000 970 99.25500 1 537 1 chr6D.!!$F1 536
21 TraesCS1D01G112500 chr3D 491627754 491628290 536 True 976.000 976 99.44100 1 537 1 chr3D.!!$R3 536
22 TraesCS1D01G112500 chr3D 297460846 297461381 535 False 974.000 974 99.44100 1 537 1 chr3D.!!$F4 536
23 TraesCS1D01G112500 chr3D 288118469 288119005 536 False 970.000 970 99.25700 1 538 1 chr3D.!!$F3 537
24 TraesCS1D01G112500 chr3D 646633 647245 612 True 961.000 961 94.94300 5119 5731 1 chr3D.!!$R1 612
25 TraesCS1D01G112500 chr3D 146057972 146058579 607 False 939.000 939 94.45400 5119 5731 1 chr3D.!!$F2 612
26 TraesCS1D01G112500 chr6A 520839150 520839761 611 True 959.000 959 94.93500 5120 5731 1 chr6A.!!$R4 611
27 TraesCS1D01G112500 chr6A 100316018 100316627 609 True 952.000 952 94.78000 5119 5731 1 chr6A.!!$R1 612
28 TraesCS1D01G112500 chr7A 314423145 314423781 636 True 872.000 872 91.37900 5119 5756 1 chr7A.!!$R1 637
29 TraesCS1D01G112500 chr7A 398928122 398930979 2857 True 231.500 252 81.27500 5438 5775 2 chr7A.!!$R4 337
30 TraesCS1D01G112500 chr4A 583751881 583752505 624 True 848.000 848 91.11100 5119 5747 1 chr4A.!!$R2 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 743 0.178903 TTAGGCCCACTGACCAGTCT 60.179 55.0 0.00 0.00 40.2 3.24 F
2161 2182 0.599558 TTGTGAACGGAGGGAGTACG 59.400 55.0 0.00 0.00 0.0 3.67 F
3311 3355 0.463833 CATAACACTTCTCCCCGCCC 60.464 60.0 0.00 0.00 0.0 6.13 F
4228 4273 0.179124 GGAGCAGTGAGGATGACGAC 60.179 60.0 0.00 0.00 0.0 4.34 F
4336 4381 0.034896 CCTCTGTGTAAACTGGCGGT 59.965 55.0 0.00 0.00 0.0 5.68 F
5985 8187 0.036952 CTTCTCTCTGAGCCGGCAAA 60.037 55.0 31.54 15.58 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2321 0.037303 CACAGGTCCATGACAGGCTT 59.963 55.0 0.0 0.0 33.68 4.35 R
4124 4169 1.017177 TTCGCCACTTATGACGGCAC 61.017 55.0 0.0 0.0 46.60 5.01 R
4317 4362 0.034896 ACCGCCAGTTTACACAGAGG 59.965 55.0 0.0 0.0 0.00 3.69 R
6074 8401 0.033366 AAATTGCTGCACGGGGAAAC 59.967 50.0 0.0 0.0 0.00 2.78 R
6075 8402 0.316841 GAAATTGCTGCACGGGGAAA 59.683 50.0 0.0 0.0 0.00 3.13 R
6995 9322 1.101331 GAGAGCAATTCTTGGGCAGG 58.899 55.0 0.0 0.0 35.87 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
317 318 3.044986 CAGTTTGCTGACATTTTCACCG 58.955 45.455 0.00 0.00 45.28 4.94
365 366 7.670364 TCAAGATATCTGTTTCAGTCTCAACA 58.330 34.615 5.86 0.00 32.61 3.33
545 547 9.305925 AGTTTTATTCAGCTTTCACAAAAGAAG 57.694 29.630 2.21 0.00 43.90 2.85
578 580 5.804639 ACTCATGTGCAAAGTATTAGGTGA 58.195 37.500 0.00 0.00 0.00 4.02
666 676 1.576421 GTGCAAACTGCCTTCCTCG 59.424 57.895 0.00 0.00 44.23 4.63
714 724 2.224079 GTGAGCAACGACAACACATGAT 59.776 45.455 0.00 0.00 0.00 2.45
730 740 0.911769 TGATTAGGCCCACTGACCAG 59.088 55.000 0.00 0.00 0.00 4.00
731 741 0.912486 GATTAGGCCCACTGACCAGT 59.088 55.000 0.00 0.00 43.61 4.00
733 743 0.178903 TTAGGCCCACTGACCAGTCT 60.179 55.000 0.00 0.00 40.20 3.24
734 744 0.178903 TAGGCCCACTGACCAGTCTT 60.179 55.000 0.00 0.00 40.20 3.01
735 745 1.062488 AGGCCCACTGACCAGTCTTT 61.062 55.000 0.00 0.00 40.20 2.52
737 747 1.692411 GCCCACTGACCAGTCTTTTT 58.308 50.000 0.00 0.00 40.20 1.94
763 773 1.078143 GAGGATGCCCACTGACCAC 60.078 63.158 0.00 0.00 33.88 4.16
778 788 3.151554 TGACCACTCAGCGTCTACTAAA 58.848 45.455 0.00 0.00 0.00 1.85
780 790 2.230750 ACCACTCAGCGTCTACTAAACC 59.769 50.000 0.00 0.00 0.00 3.27
781 791 2.516923 CACTCAGCGTCTACTAAACCG 58.483 52.381 0.00 0.00 0.00 4.44
782 792 2.095364 CACTCAGCGTCTACTAAACCGT 60.095 50.000 0.00 0.00 0.00 4.83
797 809 2.067414 ACCGTTTCTTCTTCTCTCGC 57.933 50.000 0.00 0.00 0.00 5.03
862 881 1.557443 CTCGCGTTGAAACCTCGCTT 61.557 55.000 5.77 0.00 46.31 4.68
894 913 9.739276 TTTTAACCACTCATCAAGTCTCATAAT 57.261 29.630 0.00 0.00 35.45 1.28
897 916 8.954950 AACCACTCATCAAGTCTCATAATAAG 57.045 34.615 0.00 0.00 35.45 1.73
900 919 7.655328 CCACTCATCAAGTCTCATAATAAGTCC 59.345 40.741 0.00 0.00 35.45 3.85
901 920 8.420222 CACTCATCAAGTCTCATAATAAGTCCT 58.580 37.037 0.00 0.00 35.45 3.85
911 930 5.155905 TCATAATAAGTCCTCCTTCCCTCC 58.844 45.833 0.00 0.00 34.46 4.30
1053 1072 4.767255 GCCGCTCTGTCCAGGGTG 62.767 72.222 0.62 0.62 39.08 4.61
1569 1588 3.093278 GACAAGAATGGCGGCGAG 58.907 61.111 12.98 0.00 0.00 5.03
1713 1732 4.095400 GGGGAGGAGGAGGAGGCA 62.095 72.222 0.00 0.00 0.00 4.75
1755 1774 1.318158 CCAAGGTGCTGGAGATTGGC 61.318 60.000 0.39 0.00 38.96 4.52
1905 1924 1.475034 GCACAGGTCAGAGTCCAACAA 60.475 52.381 0.00 0.00 0.00 2.83
1952 1971 4.771590 TCTGTGCAATTGGAGAATTCAC 57.228 40.909 8.44 0.52 34.06 3.18
2161 2182 0.599558 TTGTGAACGGAGGGAGTACG 59.400 55.000 0.00 0.00 0.00 3.67
2175 2196 6.424207 GGAGGGAGTACGATTTTGTTCATATC 59.576 42.308 0.00 0.00 0.00 1.63
2183 2204 5.293569 ACGATTTTGTTCATATCCCGACTTC 59.706 40.000 0.00 0.00 0.00 3.01
2201 2222 2.121291 TCCAGTGTGAGTTTTGTGCA 57.879 45.000 0.00 0.00 0.00 4.57
2204 2225 0.740737 AGTGTGAGTTTTGTGCAGCC 59.259 50.000 0.00 0.00 0.00 4.85
2300 2321 9.173021 TGTTGACTGATTTTCTTAAGAAAGACA 57.827 29.630 25.38 24.65 43.90 3.41
2453 2475 7.065803 CCCTCGTATGTTGATTTAGATGTTTGT 59.934 37.037 0.00 0.00 0.00 2.83
2538 2566 3.508845 ATACCACTTTGTCAGCCAAGT 57.491 42.857 0.00 0.00 33.75 3.16
2574 2602 8.897752 AGTTGAATATGATTTGTTAAGCTCCTC 58.102 33.333 0.00 0.00 0.00 3.71
2593 2621 0.974383 CGTGTTACCCTGAACCCTCT 59.026 55.000 0.00 0.00 0.00 3.69
2608 2637 1.340114 CCCTCTGGTAACTTTGGAGGC 60.340 57.143 0.00 0.00 41.38 4.70
2615 2644 4.850680 TGGTAACTTTGGAGGCGATTATT 58.149 39.130 0.00 0.00 37.61 1.40
2632 2661 1.686236 ATTGGTGGAAGGATCCCTGT 58.314 50.000 8.55 0.00 45.95 4.00
2678 2709 5.045869 TCAGTTACATTTACCTTAGCAGCCT 60.046 40.000 0.00 0.00 0.00 4.58
2679 2710 5.648092 CAGTTACATTTACCTTAGCAGCCTT 59.352 40.000 0.00 0.00 0.00 4.35
2680 2711 5.880887 AGTTACATTTACCTTAGCAGCCTTC 59.119 40.000 0.00 0.00 0.00 3.46
2681 2712 4.301072 ACATTTACCTTAGCAGCCTTCA 57.699 40.909 0.00 0.00 0.00 3.02
2682 2713 4.265073 ACATTTACCTTAGCAGCCTTCAG 58.735 43.478 0.00 0.00 0.00 3.02
2683 2714 4.019321 ACATTTACCTTAGCAGCCTTCAGA 60.019 41.667 0.00 0.00 0.00 3.27
2698 2735 3.812053 CCTTCAGACCTCAACTTTCTGTG 59.188 47.826 0.00 0.00 38.35 3.66
2700 2737 4.487714 TCAGACCTCAACTTTCTGTGTT 57.512 40.909 0.00 0.00 38.35 3.32
2703 2740 6.223852 TCAGACCTCAACTTTCTGTGTTATC 58.776 40.000 0.00 0.00 38.35 1.75
2717 2754 8.768501 TTCTGTGTTATCTATACTCATGGAGT 57.231 34.615 4.13 4.13 45.54 3.85
2731 2768 5.163195 ACTCATGGAGTCCTAACTGTTTTGT 60.163 40.000 11.33 0.54 38.71 2.83
2732 2769 5.690865 TCATGGAGTCCTAACTGTTTTGTT 58.309 37.500 11.33 0.00 35.28 2.83
2733 2770 6.126409 TCATGGAGTCCTAACTGTTTTGTTT 58.874 36.000 11.33 0.00 35.28 2.83
2734 2771 6.605594 TCATGGAGTCCTAACTGTTTTGTTTT 59.394 34.615 11.33 0.00 35.28 2.43
2742 2780 9.628746 GTCCTAACTGTTTTGTTTTTAGACAAA 57.371 29.630 0.00 0.00 45.07 2.83
2777 2815 1.374125 CTGTTCGTCCATGTCCGCA 60.374 57.895 0.00 0.00 0.00 5.69
2788 2826 2.480073 CCATGTCCGCATCCATTTTGTC 60.480 50.000 0.00 0.00 31.99 3.18
2795 2833 3.244976 CGCATCCATTTTGTCTTTCCAC 58.755 45.455 0.00 0.00 0.00 4.02
2799 2837 5.702209 GCATCCATTTTGTCTTTCCACATTT 59.298 36.000 0.00 0.00 0.00 2.32
2846 2884 1.694150 CACACAGGAGAAGGGACAGAA 59.306 52.381 0.00 0.00 0.00 3.02
2871 2909 7.686434 AGAATAGCACTTGGTAGGTCTTTAAA 58.314 34.615 0.00 0.00 0.00 1.52
2872 2910 7.824779 AGAATAGCACTTGGTAGGTCTTTAAAG 59.175 37.037 9.04 9.04 0.00 1.85
2873 2911 5.306114 AGCACTTGGTAGGTCTTTAAAGT 57.694 39.130 14.74 0.00 0.00 2.66
2874 2912 6.429521 AGCACTTGGTAGGTCTTTAAAGTA 57.570 37.500 14.74 0.00 0.00 2.24
2875 2913 6.228995 AGCACTTGGTAGGTCTTTAAAGTAC 58.771 40.000 14.74 9.87 0.00 2.73
2876 2914 6.042897 AGCACTTGGTAGGTCTTTAAAGTACT 59.957 38.462 14.74 15.02 0.00 2.73
2877 2915 6.368243 GCACTTGGTAGGTCTTTAAAGTACTC 59.632 42.308 14.74 8.26 0.00 2.59
2878 2916 6.872547 CACTTGGTAGGTCTTTAAAGTACTCC 59.127 42.308 14.74 14.93 0.00 3.85
2879 2917 6.013898 ACTTGGTAGGTCTTTAAAGTACTCCC 60.014 42.308 14.74 13.64 0.00 4.30
2880 2918 5.658474 TGGTAGGTCTTTAAAGTACTCCCT 58.342 41.667 14.74 13.95 0.00 4.20
2881 2919 5.718607 TGGTAGGTCTTTAAAGTACTCCCTC 59.281 44.000 14.74 8.91 0.00 4.30
2882 2920 5.128499 GGTAGGTCTTTAAAGTACTCCCTCC 59.872 48.000 14.74 12.70 0.00 4.30
2883 2921 3.768215 AGGTCTTTAAAGTACTCCCTCCG 59.232 47.826 14.74 0.00 0.00 4.63
2884 2922 3.513119 GGTCTTTAAAGTACTCCCTCCGT 59.487 47.826 14.74 0.00 0.00 4.69
2885 2923 4.706962 GGTCTTTAAAGTACTCCCTCCGTA 59.293 45.833 14.74 0.00 0.00 4.02
2886 2924 5.185828 GGTCTTTAAAGTACTCCCTCCGTAA 59.814 44.000 14.74 0.00 0.00 3.18
2887 2925 6.295292 GGTCTTTAAAGTACTCCCTCCGTAAA 60.295 42.308 14.74 0.00 0.00 2.01
2888 2926 6.587990 GTCTTTAAAGTACTCCCTCCGTAAAC 59.412 42.308 14.74 0.00 0.00 2.01
2889 2927 6.494835 TCTTTAAAGTACTCCCTCCGTAAACT 59.505 38.462 14.74 0.00 0.00 2.66
2890 2928 7.669722 TCTTTAAAGTACTCCCTCCGTAAACTA 59.330 37.037 14.74 0.00 0.00 2.24
2891 2929 7.775053 TTAAAGTACTCCCTCCGTAAACTAA 57.225 36.000 0.00 0.00 0.00 2.24
2892 2930 6.864151 AAAGTACTCCCTCCGTAAACTAAT 57.136 37.500 0.00 0.00 0.00 1.73
2893 2931 7.961326 AAAGTACTCCCTCCGTAAACTAATA 57.039 36.000 0.00 0.00 0.00 0.98
2894 2932 8.544687 AAAGTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
2895 2933 9.646522 AAAGTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
2896 2934 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2897 2935 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2898 2936 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2899 2937 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2900 2938 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2901 2939 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2902 2940 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2903 2941 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2904 2942 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2905 2943 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2906 2944 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2907 2945 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2918 2956 5.899120 AGAGCGTTTAGATCACTACTTCA 57.101 39.130 0.00 0.00 37.82 3.02
2919 2957 5.885881 AGAGCGTTTAGATCACTACTTCAG 58.114 41.667 0.00 0.00 37.82 3.02
2920 2958 5.416326 AGAGCGTTTAGATCACTACTTCAGT 59.584 40.000 0.00 0.00 37.82 3.41
2934 2972 7.768807 ACTACTTCAGTGATCTAAACACTCT 57.231 36.000 0.00 0.00 45.15 3.24
2935 2973 8.184304 ACTACTTCAGTGATCTAAACACTCTT 57.816 34.615 0.00 0.00 45.15 2.85
2936 2974 9.298250 ACTACTTCAGTGATCTAAACACTCTTA 57.702 33.333 0.00 0.00 45.15 2.10
3311 3355 0.463833 CATAACACTTCTCCCCGCCC 60.464 60.000 0.00 0.00 0.00 6.13
3474 3518 1.464734 CTCCAGGTAGAAGAGTCGCA 58.535 55.000 0.00 0.00 0.00 5.10
3498 3542 4.467084 CATGGCCGGGCGTGTAGT 62.467 66.667 35.50 10.56 0.00 2.73
3570 3614 2.847234 AGGTGAGCCGGTGGAACA 60.847 61.111 1.90 0.00 39.98 3.18
3940 3985 1.218316 CGGAGGCCTAAAGCGAAGT 59.782 57.895 4.42 0.00 45.17 3.01
4040 4085 2.417516 CGCGGAGGTGGTAGGATG 59.582 66.667 0.00 0.00 0.00 3.51
4041 4086 2.423898 CGCGGAGGTGGTAGGATGT 61.424 63.158 0.00 0.00 0.00 3.06
4122 4167 1.449778 GCCAGTTAAGCGGGTCCTC 60.450 63.158 0.00 0.00 34.75 3.71
4157 4202 0.732571 GGCGAAATCAATCTTGGCGA 59.267 50.000 0.00 0.00 0.00 5.54
4225 4270 4.823276 CGGAGCAGTGAGGATGAC 57.177 61.111 0.00 0.00 0.00 3.06
4226 4271 1.226802 CGGAGCAGTGAGGATGACG 60.227 63.158 0.00 0.00 0.00 4.35
4227 4272 1.657751 CGGAGCAGTGAGGATGACGA 61.658 60.000 0.00 0.00 0.00 4.20
4228 4273 0.179124 GGAGCAGTGAGGATGACGAC 60.179 60.000 0.00 0.00 0.00 4.34
4229 4274 0.524392 GAGCAGTGAGGATGACGACG 60.524 60.000 0.00 0.00 0.00 5.12
4230 4275 2.161486 GCAGTGAGGATGACGACGC 61.161 63.158 0.00 0.00 0.00 5.19
4231 4276 1.517257 CAGTGAGGATGACGACGCC 60.517 63.158 0.00 0.00 0.00 5.68
4232 4277 2.202756 GTGAGGATGACGACGCCC 60.203 66.667 0.00 0.00 0.00 6.13
4233 4278 3.822192 TGAGGATGACGACGCCCG 61.822 66.667 0.00 0.00 45.44 6.13
4234 4279 4.570663 GAGGATGACGACGCCCGG 62.571 72.222 0.00 0.00 43.93 5.73
4236 4281 4.867599 GGATGACGACGCCCGGTC 62.868 72.222 0.00 0.00 43.93 4.79
4237 4282 4.124351 GATGACGACGCCCGGTCA 62.124 66.667 0.00 0.00 46.42 4.02
4238 4283 3.636313 GATGACGACGCCCGGTCAA 62.636 63.158 0.00 0.00 46.42 3.18
4239 4284 3.927163 ATGACGACGCCCGGTCAAC 62.927 63.158 0.00 0.00 46.42 3.18
4249 4294 4.388499 CGGTCAACGGTGGGGAGG 62.388 72.222 0.00 0.00 39.42 4.30
4250 4295 4.717313 GGTCAACGGTGGGGAGGC 62.717 72.222 0.00 0.00 0.00 4.70
4251 4296 4.717313 GTCAACGGTGGGGAGGCC 62.717 72.222 0.00 0.00 0.00 5.19
4258 4303 3.834799 GTGGGGAGGCCGTCGTAG 61.835 72.222 0.00 0.00 0.00 3.51
4290 4335 3.775654 GGACGAGGCCCCAGACTG 61.776 72.222 0.00 0.00 0.00 3.51
4291 4336 4.459089 GACGAGGCCCCAGACTGC 62.459 72.222 0.00 0.00 0.00 4.40
4293 4338 4.463879 CGAGGCCCCAGACTGCAG 62.464 72.222 13.48 13.48 0.00 4.41
4294 4339 4.792804 GAGGCCCCAGACTGCAGC 62.793 72.222 15.27 6.85 0.00 5.25
4296 4341 4.437587 GGCCCCAGACTGCAGCAT 62.438 66.667 15.27 0.00 0.00 3.79
4297 4342 3.138798 GCCCCAGACTGCAGCATG 61.139 66.667 15.27 12.72 40.87 4.06
4298 4343 2.439701 CCCCAGACTGCAGCATGG 60.440 66.667 24.43 24.43 35.86 3.66
4299 4344 2.439701 CCCAGACTGCAGCATGGG 60.440 66.667 31.74 31.74 46.14 4.00
4300 4345 2.353958 CCAGACTGCAGCATGGGT 59.646 61.111 23.91 1.86 35.86 4.51
4301 4346 1.603842 CCAGACTGCAGCATGGGTA 59.396 57.895 23.91 0.00 35.86 3.69
4302 4347 0.745845 CCAGACTGCAGCATGGGTAC 60.746 60.000 23.91 3.99 35.86 3.34
4315 4360 3.543641 GGTACCGATGGGTCCCCG 61.544 72.222 1.19 2.09 46.01 5.73
4316 4361 3.543641 GTACCGATGGGTCCCCGG 61.544 72.222 20.68 20.68 46.01 5.73
4326 4371 2.682494 GTCCCCGGCCTCTGTGTA 60.682 66.667 0.00 0.00 0.00 2.90
4327 4372 2.120940 TCCCCGGCCTCTGTGTAA 59.879 61.111 0.00 0.00 0.00 2.41
4328 4373 1.536907 TCCCCGGCCTCTGTGTAAA 60.537 57.895 0.00 0.00 0.00 2.01
4329 4374 1.376812 CCCCGGCCTCTGTGTAAAC 60.377 63.158 0.00 0.00 0.00 2.01
4330 4375 1.677552 CCCGGCCTCTGTGTAAACT 59.322 57.895 0.00 0.00 0.00 2.66
4331 4376 0.673644 CCCGGCCTCTGTGTAAACTG 60.674 60.000 0.00 0.00 0.00 3.16
4332 4377 0.673644 CCGGCCTCTGTGTAAACTGG 60.674 60.000 0.00 0.00 0.00 4.00
4333 4378 1.298859 CGGCCTCTGTGTAAACTGGC 61.299 60.000 0.00 6.71 39.61 4.85
4334 4379 1.298859 GGCCTCTGTGTAAACTGGCG 61.299 60.000 0.00 0.00 41.08 5.69
4335 4380 1.298859 GCCTCTGTGTAAACTGGCGG 61.299 60.000 0.00 0.00 0.00 6.13
4336 4381 0.034896 CCTCTGTGTAAACTGGCGGT 59.965 55.000 0.00 0.00 0.00 5.68
4337 4382 1.148310 CTCTGTGTAAACTGGCGGTG 58.852 55.000 0.00 0.00 0.00 4.94
4338 4383 0.250124 TCTGTGTAAACTGGCGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
4339 4384 1.852067 CTGTGTAAACTGGCGGTGGC 61.852 60.000 0.00 0.00 38.90 5.01
4340 4385 2.666862 TGTAAACTGGCGGTGGCG 60.667 61.111 0.00 0.00 41.24 5.69
4341 4386 2.357760 GTAAACTGGCGGTGGCGA 60.358 61.111 0.00 0.00 41.24 5.54
4342 4387 2.357760 TAAACTGGCGGTGGCGAC 60.358 61.111 0.00 0.00 41.24 5.19
4343 4388 3.166490 TAAACTGGCGGTGGCGACA 62.166 57.895 0.00 0.00 41.24 4.35
4344 4389 2.457743 TAAACTGGCGGTGGCGACAT 62.458 55.000 0.00 0.00 46.14 3.06
4345 4390 4.760047 ACTGGCGGTGGCGACATC 62.760 66.667 0.00 0.00 46.14 3.06
4351 4396 4.404098 GGTGGCGACATCCCGGTT 62.404 66.667 0.00 0.00 46.14 4.44
4352 4397 2.580276 GTGGCGACATCCCGGTTA 59.420 61.111 0.00 0.00 46.14 2.85
4353 4398 1.520787 GTGGCGACATCCCGGTTAG 60.521 63.158 0.00 0.00 46.14 2.34
4354 4399 2.588034 GGCGACATCCCGGTTAGC 60.588 66.667 0.00 0.00 0.00 3.09
4355 4400 2.588034 GCGACATCCCGGTTAGCC 60.588 66.667 0.00 0.00 0.00 3.93
4356 4401 2.897207 CGACATCCCGGTTAGCCA 59.103 61.111 0.00 0.00 34.09 4.75
4357 4402 1.227263 CGACATCCCGGTTAGCCAG 60.227 63.158 0.00 0.00 34.09 4.85
4358 4403 1.146263 GACATCCCGGTTAGCCAGG 59.854 63.158 0.00 0.00 33.49 4.45
4359 4404 2.203209 CATCCCGGTTAGCCAGGC 60.203 66.667 1.84 1.84 32.21 4.85
4360 4405 3.489513 ATCCCGGTTAGCCAGGCC 61.490 66.667 8.22 0.00 32.21 5.19
4365 4410 3.489513 GGTTAGCCAGGCCGGGAT 61.490 66.667 27.79 23.40 34.06 3.85
4366 4411 2.111251 GTTAGCCAGGCCGGGATC 59.889 66.667 27.79 8.93 34.06 3.36
4367 4412 3.546543 TTAGCCAGGCCGGGATCG 61.547 66.667 27.79 0.00 34.06 3.69
4398 4443 2.742372 CGGAAACCGGACCTGCTG 60.742 66.667 9.46 0.00 44.15 4.41
4400 4445 2.747686 GAAACCGGACCTGCTGGA 59.252 61.111 17.64 0.00 46.81 3.86
4401 4446 1.299976 GAAACCGGACCTGCTGGAT 59.700 57.895 17.64 0.21 46.81 3.41
4402 4447 0.744771 GAAACCGGACCTGCTGGATC 60.745 60.000 17.64 9.78 46.81 3.36
4403 4448 2.521958 AAACCGGACCTGCTGGATCG 62.522 60.000 17.64 17.31 46.81 3.69
4404 4449 4.227134 CCGGACCTGCTGGATCGG 62.227 72.222 24.06 24.06 46.81 4.18
4405 4450 3.147595 CGGACCTGCTGGATCGGA 61.148 66.667 17.64 0.00 37.04 4.55
4406 4451 2.721167 CGGACCTGCTGGATCGGAA 61.721 63.158 17.64 0.00 37.04 4.30
4407 4452 1.144936 GGACCTGCTGGATCGGAAG 59.855 63.158 17.64 0.00 37.04 3.46
4408 4453 1.617947 GGACCTGCTGGATCGGAAGT 61.618 60.000 17.64 0.00 37.04 3.01
4409 4454 0.179097 GACCTGCTGGATCGGAAGTC 60.179 60.000 17.64 0.00 37.04 3.01
4410 4455 1.144936 CCTGCTGGATCGGAAGTCC 59.855 63.158 2.92 0.00 36.26 3.85
4411 4456 1.333636 CCTGCTGGATCGGAAGTCCT 61.334 60.000 2.92 0.00 36.68 3.85
4412 4457 0.103937 CTGCTGGATCGGAAGTCCTC 59.896 60.000 0.00 0.00 36.68 3.71
4413 4458 1.330655 TGCTGGATCGGAAGTCCTCC 61.331 60.000 0.00 0.00 41.40 4.30
4414 4459 2.034048 GCTGGATCGGAAGTCCTCCC 62.034 65.000 3.77 0.00 41.87 4.30
4415 4460 1.739338 CTGGATCGGAAGTCCTCCCG 61.739 65.000 0.00 0.00 46.57 5.14
4416 4461 2.499827 GGATCGGAAGTCCTCCCGG 61.500 68.421 0.00 0.00 45.36 5.73
4417 4462 1.757340 GATCGGAAGTCCTCCCGGT 60.757 63.158 0.00 0.00 45.36 5.28
4418 4463 2.017559 GATCGGAAGTCCTCCCGGTG 62.018 65.000 0.00 0.00 45.36 4.94
4419 4464 2.800159 ATCGGAAGTCCTCCCGGTGT 62.800 60.000 0.00 0.00 45.36 4.16
4420 4465 2.979649 GGAAGTCCTCCCGGTGTC 59.020 66.667 0.00 0.00 38.44 3.67
4421 4466 2.572284 GAAGTCCTCCCGGTGTCG 59.428 66.667 0.00 0.00 0.00 4.35
4422 4467 1.975407 GAAGTCCTCCCGGTGTCGA 60.975 63.158 0.00 0.00 39.00 4.20
4423 4468 2.210341 GAAGTCCTCCCGGTGTCGAC 62.210 65.000 9.11 9.11 39.00 4.20
4424 4469 2.675772 GTCCTCCCGGTGTCGACT 60.676 66.667 17.92 0.00 39.00 4.18
4425 4470 2.675423 TCCTCCCGGTGTCGACTG 60.675 66.667 17.92 6.58 39.00 3.51
4427 4472 4.436998 CTCCCGGTGTCGACTGGC 62.437 72.222 17.92 6.94 46.35 4.85
4431 4476 4.742201 CGGTGTCGACTGGCCCAG 62.742 72.222 17.92 9.83 39.00 4.45
5634 7831 3.482232 CTGGGAGCCGGGCAATAGG 62.482 68.421 23.09 4.36 0.00 2.57
5775 7975 2.038387 AGCTAAACCGGCCATAACAG 57.962 50.000 0.00 0.00 0.00 3.16
5776 7976 1.557832 AGCTAAACCGGCCATAACAGA 59.442 47.619 0.00 0.00 0.00 3.41
5777 7977 1.940613 GCTAAACCGGCCATAACAGAG 59.059 52.381 0.00 0.00 0.00 3.35
5778 7978 2.561569 CTAAACCGGCCATAACAGAGG 58.438 52.381 0.00 0.00 0.00 3.69
5779 7979 0.988832 AAACCGGCCATAACAGAGGA 59.011 50.000 0.00 0.00 0.00 3.71
5783 7983 1.760613 CCGGCCATAACAGAGGAAGTA 59.239 52.381 2.24 0.00 0.00 2.24
5787 7987 4.443621 GGCCATAACAGAGGAAGTACTTC 58.556 47.826 24.73 24.73 38.80 3.01
5800 8000 5.710567 AGGAAGTACTTCTTAATTTGGTGGC 59.289 40.000 29.66 12.16 39.45 5.01
5803 8003 6.759497 AGTACTTCTTAATTTGGTGGCATC 57.241 37.500 0.00 0.00 0.00 3.91
5805 8005 4.079253 ACTTCTTAATTTGGTGGCATCGT 58.921 39.130 0.00 0.00 0.00 3.73
5850 8051 5.288804 GCACTTTGACATGCTAAGGAAAAA 58.711 37.500 12.83 0.00 38.84 1.94
5889 8090 8.712228 AATAAAGGAAAGAGGTTTCAAGATGT 57.288 30.769 0.66 0.00 43.52 3.06
5903 8104 3.010027 TCAAGATGTGCCCAAATGGTAGA 59.990 43.478 0.00 0.00 36.04 2.59
5907 8108 2.455557 TGTGCCCAAATGGTAGAATGG 58.544 47.619 0.00 0.00 36.04 3.16
5909 8110 0.752658 GCCCAAATGGTAGAATGGCC 59.247 55.000 0.00 0.00 36.04 5.36
5914 8115 3.243501 CCAAATGGTAGAATGGCCAATCG 60.244 47.826 10.96 0.00 38.38 3.34
5921 8122 4.023707 GGTAGAATGGCCAATCGATTGAAG 60.024 45.833 34.21 21.44 40.14 3.02
5942 8143 3.686726 AGCTGAAATCTCCAGTTTTAGCG 59.313 43.478 8.91 0.00 46.55 4.26
5950 8151 0.521735 CCAGTTTTAGCGAAGGCACC 59.478 55.000 0.00 0.00 43.41 5.01
5969 8170 3.629398 CACCAGTGCATTTCCTATCCTTC 59.371 47.826 0.00 0.00 0.00 3.46
5971 8172 4.133078 CCAGTGCATTTCCTATCCTTCTC 58.867 47.826 0.00 0.00 0.00 2.87
5974 8176 4.968080 AGTGCATTTCCTATCCTTCTCTCT 59.032 41.667 0.00 0.00 0.00 3.10
5979 8181 3.237268 TCCTATCCTTCTCTCTGAGCC 57.763 52.381 0.00 0.00 0.00 4.70
5980 8182 1.885887 CCTATCCTTCTCTCTGAGCCG 59.114 57.143 0.00 0.00 0.00 5.52
5981 8183 1.885887 CTATCCTTCTCTCTGAGCCGG 59.114 57.143 0.00 0.00 0.00 6.13
5982 8184 1.398958 ATCCTTCTCTCTGAGCCGGC 61.399 60.000 21.89 21.89 0.00 6.13
5983 8185 2.354401 CCTTCTCTCTGAGCCGGCA 61.354 63.158 31.54 7.98 0.00 5.69
5984 8186 1.593787 CTTCTCTCTGAGCCGGCAA 59.406 57.895 31.54 16.00 0.00 4.52
5985 8187 0.036952 CTTCTCTCTGAGCCGGCAAA 60.037 55.000 31.54 15.58 0.00 3.68
5986 8188 0.036952 TTCTCTCTGAGCCGGCAAAG 60.037 55.000 31.54 24.65 0.00 2.77
6016 8343 5.277490 CCATAATGTATCAAACAGAGCCACG 60.277 44.000 0.00 0.00 42.70 4.94
6017 8344 3.610040 ATGTATCAAACAGAGCCACGA 57.390 42.857 0.00 0.00 42.70 4.35
6018 8345 2.683968 TGTATCAAACAGAGCCACGAC 58.316 47.619 0.00 0.00 33.01 4.34
6025 8352 1.376424 CAGAGCCACGACCTGCAAT 60.376 57.895 0.00 0.00 0.00 3.56
6085 8412 0.321653 AGATGACAGTTTCCCCGTGC 60.322 55.000 0.00 0.00 0.00 5.34
6119 8446 6.097839 CCAGCTGTATACCTTACCACTTTCTA 59.902 42.308 13.81 0.00 0.00 2.10
6187 8514 5.407502 GTCTGCTTTAGAAGTTCTCCTCTC 58.592 45.833 9.12 0.00 37.12 3.20
6191 8518 5.992217 TGCTTTAGAAGTTCTCCTCTCAAAC 59.008 40.000 9.12 0.31 0.00 2.93
6196 8523 6.732896 AGAAGTTCTCCTCTCAAACTGTAA 57.267 37.500 0.00 0.00 33.68 2.41
6199 8526 5.848406 AGTTCTCCTCTCAAACTGTAACAG 58.152 41.667 0.00 0.00 37.52 3.16
6207 8534 6.372659 CCTCTCAAACTGTAACAGCACATAAT 59.627 38.462 0.00 0.00 34.37 1.28
6214 8541 3.689161 TGTAACAGCACATAATCACCAGC 59.311 43.478 0.00 0.00 0.00 4.85
6216 8543 3.077484 ACAGCACATAATCACCAGCTT 57.923 42.857 0.00 0.00 0.00 3.74
6217 8544 4.220693 ACAGCACATAATCACCAGCTTA 57.779 40.909 0.00 0.00 0.00 3.09
6221 8548 5.007430 CAGCACATAATCACCAGCTTAAGAG 59.993 44.000 6.67 0.00 0.00 2.85
6229 8556 3.653836 TCACCAGCTTAAGAGGGGTTTTA 59.346 43.478 6.67 0.00 0.00 1.52
6286 8613 1.672356 CTCACAGGCTGGTTTCGGG 60.672 63.158 20.34 0.00 0.00 5.14
6334 8661 3.845781 ATGTTCTCAGTGACAACACCT 57.154 42.857 15.11 0.00 46.99 4.00
6335 8662 3.179443 TGTTCTCAGTGACAACACCTC 57.821 47.619 9.61 0.00 46.99 3.85
6460 8787 0.613260 TCCTTGTCTACATGGCGCTT 59.387 50.000 7.64 0.00 40.03 4.68
6745 9072 5.241506 TGCTTCTGTTACTTTGCAGCTTATT 59.758 36.000 0.00 0.00 33.09 1.40
6811 9138 7.613585 TGATTTACCTTTCAGTTGATACCGTA 58.386 34.615 0.00 0.00 0.00 4.02
6827 9154 7.049754 TGATACCGTACACTGTAATAGACTGA 58.950 38.462 0.00 0.00 0.00 3.41
6834 9161 8.975439 CGTACACTGTAATAGACTGAACTTTTT 58.025 33.333 0.00 0.00 0.00 1.94
6905 9232 2.909006 TCATGTTCAGAGAAGGAAGGCT 59.091 45.455 0.00 0.00 0.00 4.58
6906 9233 4.096681 TCATGTTCAGAGAAGGAAGGCTA 58.903 43.478 0.00 0.00 0.00 3.93
6964 9291 2.965477 GCAATTTGCAAATTTCGCCA 57.035 40.000 30.13 0.00 44.26 5.69
6986 9313 7.754924 CGCCACACTTAATTAAGAATGTTCATT 59.245 33.333 27.92 3.18 37.08 2.57
7052 9379 9.832445 CTGATATTTTACCACCAGTAAGTATGT 57.168 33.333 0.00 0.00 41.89 2.29
7114 9441 6.642131 TGCTCATTTTGTTCTGCATTTAGTTC 59.358 34.615 0.00 0.00 0.00 3.01
7154 9631 1.115467 TTCTCCTAGCAGGCTAGCAC 58.885 55.000 20.28 6.06 43.35 4.40
7179 9656 7.457852 ACCATATTATCATCTACAGGCAAGGTA 59.542 37.037 0.00 0.00 0.00 3.08
7211 9688 4.584874 CATTACATGTGGTAGTGGTTCCA 58.415 43.478 9.11 0.00 36.39 3.53
7246 9723 3.749665 TGCTTGCTTTAACTTGGCAAT 57.250 38.095 0.00 0.00 43.51 3.56
7267 9744 5.779529 ATTATGCTGCCCTTCATACTTTG 57.220 39.130 0.00 0.00 0.00 2.77
7268 9745 2.584835 TGCTGCCCTTCATACTTTGT 57.415 45.000 0.00 0.00 0.00 2.83
7302 9781 7.704899 TCTCTGTATATTTGATGTACAACACCG 59.295 37.037 5.16 0.00 36.60 4.94
7480 9986 5.824904 ACTCGCAATGCAAGAATTCTAAT 57.175 34.783 8.75 0.43 0.00 1.73
7565 10104 0.665972 CCAAAATGGCGTCCAAACCG 60.666 55.000 2.68 0.00 36.95 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
365 366 3.760035 AACGGCAGGCTCGACGAT 61.760 61.111 17.05 4.44 0.00 3.73
551 553 7.979537 CACCTAATACTTTGCACATGAGTAGTA 59.020 37.037 0.00 0.00 30.19 1.82
714 724 0.178903 AGACTGGTCAGTGGGCCTAA 60.179 55.000 8.49 0.00 42.66 2.69
740 750 2.238521 GTCAGTGGGCATCCTCAAAAA 58.761 47.619 0.00 0.00 0.00 1.94
743 753 1.133181 TGGTCAGTGGGCATCCTCAA 61.133 55.000 0.00 0.00 0.00 3.02
750 760 3.150949 CTGAGTGGTCAGTGGGCA 58.849 61.111 0.00 0.00 44.72 5.36
763 773 2.915738 ACGGTTTAGTAGACGCTGAG 57.084 50.000 0.00 0.00 0.00 3.35
778 788 1.340248 TGCGAGAGAAGAAGAAACGGT 59.660 47.619 0.00 0.00 0.00 4.83
780 790 3.053455 ACTTGCGAGAGAAGAAGAAACG 58.947 45.455 8.31 0.00 0.00 3.60
781 791 5.411083 AAACTTGCGAGAGAAGAAGAAAC 57.589 39.130 8.31 0.00 0.00 2.78
782 792 4.511826 GGAAACTTGCGAGAGAAGAAGAAA 59.488 41.667 8.31 0.00 0.00 2.52
797 809 3.727726 GATGGGGTTTTGTGGAAACTTG 58.272 45.455 2.18 0.00 45.55 3.16
862 881 7.556275 AGACTTGATGAGTGGTTAAAAGAAACA 59.444 33.333 0.00 0.00 39.19 2.83
894 913 0.342313 GGGGAGGGAAGGAGGACTTA 59.658 60.000 0.00 0.00 40.21 2.24
895 914 1.083141 GGGGAGGGAAGGAGGACTT 59.917 63.158 0.00 0.00 43.65 3.01
897 916 1.690985 CAGGGGAGGGAAGGAGGAC 60.691 68.421 0.00 0.00 0.00 3.85
900 919 3.093172 GGCAGGGGAGGGAAGGAG 61.093 72.222 0.00 0.00 0.00 3.69
1041 1060 3.625897 CGGCACACCCTGGACAGA 61.626 66.667 0.00 0.00 0.00 3.41
1593 1612 0.676782 CGCCTTTCTTGGGACCGAAT 60.677 55.000 0.00 0.00 0.00 3.34
1713 1732 3.073650 ACACCATCTTCTGCTTCTTCCTT 59.926 43.478 0.00 0.00 0.00 3.36
1789 1808 2.187946 GTCCTGCGACATCCCCAG 59.812 66.667 0.00 0.00 38.99 4.45
1905 1924 2.964464 TCACACCAAATTGAGTGGCATT 59.036 40.909 15.39 0.00 40.02 3.56
2161 2182 5.588648 TGGAAGTCGGGATATGAACAAAATC 59.411 40.000 0.00 0.00 0.00 2.17
2183 2204 1.534595 GCTGCACAAAACTCACACTGG 60.535 52.381 0.00 0.00 0.00 4.00
2201 2222 6.736110 AATTCATACCATTGCAAATAGGCT 57.264 33.333 1.71 0.00 34.04 4.58
2204 2225 9.903682 CTTCCTAATTCATACCATTGCAAATAG 57.096 33.333 1.71 0.00 0.00 1.73
2264 2285 6.261826 AGAAAATCAGTCAACAGGAAAGACAG 59.738 38.462 0.00 0.00 34.80 3.51
2300 2321 0.037303 CACAGGTCCATGACAGGCTT 59.963 55.000 0.00 0.00 33.68 4.35
2453 2475 7.509546 ACAGGATTACTCAAAGACAGAGAAAA 58.490 34.615 0.00 0.00 36.91 2.29
2566 2594 0.608640 CAGGGTAACACGAGGAGCTT 59.391 55.000 0.00 0.00 39.74 3.74
2574 2602 0.974383 AGAGGGTTCAGGGTAACACG 59.026 55.000 0.00 0.00 37.85 4.49
2593 2621 2.871096 AATCGCCTCCAAAGTTACCA 57.129 45.000 0.00 0.00 0.00 3.25
2608 2637 3.073062 AGGGATCCTTCCACCAATAATCG 59.927 47.826 12.58 0.00 44.60 3.34
2615 2644 0.698238 CAACAGGGATCCTTCCACCA 59.302 55.000 12.58 0.00 44.60 4.17
2632 2661 1.975660 AAAAAGGGCTCGCTGTACAA 58.024 45.000 0.00 0.00 0.00 2.41
2660 2691 4.019321 TCTGAAGGCTGCTAAGGTAAATGT 60.019 41.667 0.00 0.00 0.00 2.71
2668 2699 1.552337 TGAGGTCTGAAGGCTGCTAAG 59.448 52.381 0.00 0.00 0.00 2.18
2678 2709 4.487714 ACACAGAAAGTTGAGGTCTGAA 57.512 40.909 8.88 0.00 41.08 3.02
2679 2710 4.487714 AACACAGAAAGTTGAGGTCTGA 57.512 40.909 8.88 0.00 41.08 3.27
2680 2711 6.226787 AGATAACACAGAAAGTTGAGGTCTG 58.773 40.000 1.51 1.51 43.61 3.51
2681 2712 6.426646 AGATAACACAGAAAGTTGAGGTCT 57.573 37.500 0.00 0.00 0.00 3.85
2682 2713 9.303537 GTATAGATAACACAGAAAGTTGAGGTC 57.696 37.037 0.00 0.00 0.00 3.85
2683 2714 9.036980 AGTATAGATAACACAGAAAGTTGAGGT 57.963 33.333 0.00 0.00 0.00 3.85
2698 2735 9.523168 AGTTAGGACTCCATGAGTATAGATAAC 57.477 37.037 0.00 3.56 43.53 1.89
2700 2737 8.670490 ACAGTTAGGACTCCATGAGTATAGATA 58.330 37.037 0.00 0.00 43.53 1.98
2703 2740 7.589958 AACAGTTAGGACTCCATGAGTATAG 57.410 40.000 0.00 0.00 43.53 1.31
2742 2780 6.758254 ACGAACAGAATTGAATGGGAAAAAT 58.242 32.000 0.00 0.00 0.00 1.82
2751 2789 4.396166 GGACATGGACGAACAGAATTGAAT 59.604 41.667 0.00 0.00 0.00 2.57
2777 2815 5.702209 GCAAATGTGGAAAGACAAAATGGAT 59.298 36.000 0.00 0.00 0.00 3.41
2788 2826 5.163683 CCTCATCTAGTGCAAATGTGGAAAG 60.164 44.000 12.08 0.00 36.58 2.62
2795 2833 3.538591 TCAGCCTCATCTAGTGCAAATG 58.461 45.455 0.00 0.00 0.00 2.32
2799 2837 2.113807 ACATCAGCCTCATCTAGTGCA 58.886 47.619 0.00 0.00 0.00 4.57
2830 2868 4.442753 GCTATTCTTCTGTCCCTTCTCCTG 60.443 50.000 0.00 0.00 0.00 3.86
2846 2884 5.763876 AAAGACCTACCAAGTGCTATTCT 57.236 39.130 0.00 0.00 0.00 2.40
2871 2909 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
2872 2910 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2873 2911 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2874 2912 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2875 2913 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2876 2914 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2877 2915 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2878 2916 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2879 2917 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2880 2918 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2881 2919 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2892 2930 9.117183 TGAAGTAGTGATCTAAACGCTCTTATA 57.883 33.333 0.00 0.00 0.00 0.98
2893 2931 7.997482 TGAAGTAGTGATCTAAACGCTCTTAT 58.003 34.615 0.00 0.00 0.00 1.73
2894 2932 7.120873 ACTGAAGTAGTGATCTAAACGCTCTTA 59.879 37.037 0.00 0.00 38.49 2.10
2895 2933 6.071840 ACTGAAGTAGTGATCTAAACGCTCTT 60.072 38.462 0.00 0.00 38.49 2.85
2896 2934 5.416326 ACTGAAGTAGTGATCTAAACGCTCT 59.584 40.000 0.00 0.00 38.49 4.09
2897 2935 5.642686 ACTGAAGTAGTGATCTAAACGCTC 58.357 41.667 0.00 0.00 38.49 5.03
2898 2936 5.646577 ACTGAAGTAGTGATCTAAACGCT 57.353 39.130 0.00 0.00 38.49 5.07
2910 2948 7.768807 AGAGTGTTTAGATCACTGAAGTAGT 57.231 36.000 3.29 0.00 44.68 2.73
2928 2966 9.490083 ACCCTCTGTAAACTAATATAAGAGTGT 57.510 33.333 0.00 0.00 0.00 3.55
2929 2967 9.751542 CACCCTCTGTAAACTAATATAAGAGTG 57.248 37.037 0.00 0.00 0.00 3.51
2930 2968 8.925338 CCACCCTCTGTAAACTAATATAAGAGT 58.075 37.037 0.00 0.00 0.00 3.24
2931 2969 8.925338 ACCACCCTCTGTAAACTAATATAAGAG 58.075 37.037 0.00 0.00 0.00 2.85
2932 2970 8.849543 ACCACCCTCTGTAAACTAATATAAGA 57.150 34.615 0.00 0.00 0.00 2.10
2934 2972 9.940974 TCTACCACCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
2935 2973 9.940974 TTCTACCACCCTCTGTAAACTAATATA 57.059 33.333 0.00 0.00 0.00 0.86
2936 2974 8.702819 GTTCTACCACCCTCTGTAAACTAATAT 58.297 37.037 0.00 0.00 0.00 1.28
2937 2975 7.124750 GGTTCTACCACCCTCTGTAAACTAATA 59.875 40.741 0.00 0.00 38.42 0.98
2938 2976 6.070366 GGTTCTACCACCCTCTGTAAACTAAT 60.070 42.308 0.00 0.00 38.42 1.73
2939 2977 5.246883 GGTTCTACCACCCTCTGTAAACTAA 59.753 44.000 0.00 0.00 38.42 2.24
2940 2978 4.774200 GGTTCTACCACCCTCTGTAAACTA 59.226 45.833 0.00 0.00 38.42 2.24
2941 2979 3.581770 GGTTCTACCACCCTCTGTAAACT 59.418 47.826 0.00 0.00 38.42 2.66
2942 2980 3.325716 TGGTTCTACCACCCTCTGTAAAC 59.674 47.826 0.00 0.00 44.79 2.01
2943 2981 3.581332 CTGGTTCTACCACCCTCTGTAAA 59.419 47.826 0.00 0.00 44.79 2.01
2944 2982 3.170717 CTGGTTCTACCACCCTCTGTAA 58.829 50.000 0.00 0.00 44.79 2.41
2945 2983 2.559026 CCTGGTTCTACCACCCTCTGTA 60.559 54.545 0.00 0.00 44.79 2.74
2946 2984 1.645710 CTGGTTCTACCACCCTCTGT 58.354 55.000 0.00 0.00 44.79 3.41
2947 2985 0.905357 CCTGGTTCTACCACCCTCTG 59.095 60.000 0.00 0.00 44.79 3.35
2948 2986 0.252742 CCCTGGTTCTACCACCCTCT 60.253 60.000 0.00 0.00 44.79 3.69
2949 2987 0.252558 TCCCTGGTTCTACCACCCTC 60.253 60.000 0.00 0.00 44.79 4.30
2950 2988 0.421904 ATCCCTGGTTCTACCACCCT 59.578 55.000 0.00 0.00 44.79 4.34
2951 2989 0.837940 GATCCCTGGTTCTACCACCC 59.162 60.000 0.00 0.00 44.79 4.61
2988 3026 1.212935 CCATCCTTCCCCTACAACCTG 59.787 57.143 0.00 0.00 0.00 4.00
3311 3355 1.891060 GAGGACGAGCTGTTTGTGCG 61.891 60.000 0.00 0.00 36.68 5.34
3349 3393 2.048127 GAGGAGTTCCGCAAGCGT 60.048 61.111 13.80 0.00 42.08 5.07
3705 3750 2.279918 CCATGTACTACGCCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
3857 3902 3.414700 CACGGTGCAGGACTTCGC 61.415 66.667 0.00 0.00 0.00 4.70
3930 3975 1.825474 AGCTCTGCCTACTTCGCTTTA 59.175 47.619 0.00 0.00 0.00 1.85
3940 3985 2.754254 TTCCGCGAGCTCTGCCTA 60.754 61.111 19.89 9.21 0.00 3.93
4024 4069 1.327690 TGACATCCTACCACCTCCGC 61.328 60.000 0.00 0.00 0.00 5.54
4040 4085 3.426568 GGAGCGCACTTGGCTGAC 61.427 66.667 11.47 0.00 41.72 3.51
4124 4169 1.017177 TTCGCCACTTATGACGGCAC 61.017 55.000 0.00 0.00 46.60 5.01
4147 4192 2.332654 GCCACGGTTCGCCAAGATT 61.333 57.895 0.00 0.00 37.00 2.40
4204 4249 3.023949 ATCCTCACTGCTCCGCACC 62.024 63.158 0.00 0.00 33.79 5.01
4205 4250 1.812922 CATCCTCACTGCTCCGCAC 60.813 63.158 0.00 0.00 33.79 5.34
4206 4251 1.984026 TCATCCTCACTGCTCCGCA 60.984 57.895 0.00 0.00 36.92 5.69
4207 4252 1.520342 GTCATCCTCACTGCTCCGC 60.520 63.158 0.00 0.00 0.00 5.54
4208 4253 1.226802 CGTCATCCTCACTGCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
4209 4254 0.179124 GTCGTCATCCTCACTGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
4210 4255 0.524392 CGTCGTCATCCTCACTGCTC 60.524 60.000 0.00 0.00 0.00 4.26
4211 4256 1.508545 CGTCGTCATCCTCACTGCT 59.491 57.895 0.00 0.00 0.00 4.24
4212 4257 2.161486 GCGTCGTCATCCTCACTGC 61.161 63.158 0.00 0.00 0.00 4.40
4213 4258 1.517257 GGCGTCGTCATCCTCACTG 60.517 63.158 0.00 0.00 0.00 3.66
4214 4259 2.711922 GGGCGTCGTCATCCTCACT 61.712 63.158 0.00 0.00 0.00 3.41
4215 4260 2.202756 GGGCGTCGTCATCCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
4216 4261 3.822192 CGGGCGTCGTCATCCTCA 61.822 66.667 0.00 0.00 0.00 3.86
4217 4262 4.570663 CCGGGCGTCGTCATCCTC 62.571 72.222 0.00 0.00 37.11 3.71
4219 4264 4.867599 GACCGGGCGTCGTCATCC 62.868 72.222 6.32 0.00 37.11 3.51
4220 4265 3.636313 TTGACCGGGCGTCGTCATC 62.636 63.158 6.32 0.00 45.23 2.92
4221 4266 3.687102 TTGACCGGGCGTCGTCAT 61.687 61.111 6.32 0.00 45.23 3.06
4222 4267 4.651008 GTTGACCGGGCGTCGTCA 62.651 66.667 6.32 0.00 45.23 4.35
4232 4277 4.388499 CCTCCCCACCGTTGACCG 62.388 72.222 0.00 0.00 0.00 4.79
4233 4278 4.717313 GCCTCCCCACCGTTGACC 62.717 72.222 0.00 0.00 0.00 4.02
4234 4279 4.717313 GGCCTCCCCACCGTTGAC 62.717 72.222 0.00 0.00 0.00 3.18
4241 4286 3.834799 CTACGACGGCCTCCCCAC 61.835 72.222 0.00 0.00 0.00 4.61
4273 4318 3.775654 CAGTCTGGGGCCTCGTCC 61.776 72.222 0.84 0.00 0.00 4.79
4274 4319 4.459089 GCAGTCTGGGGCCTCGTC 62.459 72.222 0.84 0.00 0.00 4.20
4276 4321 4.463879 CTGCAGTCTGGGGCCTCG 62.464 72.222 5.25 0.00 0.00 4.63
4277 4322 4.792804 GCTGCAGTCTGGGGCCTC 62.793 72.222 16.64 0.00 0.00 4.70
4279 4324 4.437587 ATGCTGCAGTCTGGGGCC 62.438 66.667 16.64 0.00 0.00 5.80
4280 4325 3.138798 CATGCTGCAGTCTGGGGC 61.139 66.667 16.64 0.00 0.00 5.80
4281 4326 2.439701 CCATGCTGCAGTCTGGGG 60.440 66.667 22.17 11.62 0.00 4.96
4282 4327 2.439701 CCCATGCTGCAGTCTGGG 60.440 66.667 29.68 29.68 42.29 4.45
4283 4328 0.745845 GTACCCATGCTGCAGTCTGG 60.746 60.000 22.68 22.68 0.00 3.86
4284 4329 0.745845 GGTACCCATGCTGCAGTCTG 60.746 60.000 16.64 12.65 0.00 3.51
4285 4330 1.604378 GGTACCCATGCTGCAGTCT 59.396 57.895 16.64 0.00 0.00 3.24
4286 4331 1.815421 CGGTACCCATGCTGCAGTC 60.815 63.158 16.64 8.39 0.00 3.51
4287 4332 1.626356 ATCGGTACCCATGCTGCAGT 61.626 55.000 16.64 3.20 0.00 4.40
4288 4333 1.146930 ATCGGTACCCATGCTGCAG 59.853 57.895 10.11 10.11 0.00 4.41
4289 4334 1.153188 CATCGGTACCCATGCTGCA 60.153 57.895 6.56 4.13 0.00 4.41
4290 4335 1.893808 CCATCGGTACCCATGCTGC 60.894 63.158 13.62 0.00 0.00 5.25
4291 4336 1.227943 CCCATCGGTACCCATGCTG 60.228 63.158 13.62 3.79 0.00 4.41
4292 4337 1.692749 ACCCATCGGTACCCATGCT 60.693 57.895 13.62 0.00 42.18 3.79
4293 4338 1.227853 GACCCATCGGTACCCATGC 60.228 63.158 13.62 0.00 44.88 4.06
4294 4339 1.450211 GGACCCATCGGTACCCATG 59.550 63.158 12.24 12.24 44.88 3.66
4295 4340 3.981313 GGACCCATCGGTACCCAT 58.019 61.111 6.25 0.00 44.88 4.00
4309 4354 1.833787 TTTACACAGAGGCCGGGGAC 61.834 60.000 2.18 0.00 0.00 4.46
4310 4355 1.536907 TTTACACAGAGGCCGGGGA 60.537 57.895 2.18 0.00 0.00 4.81
4311 4356 1.376812 GTTTACACAGAGGCCGGGG 60.377 63.158 2.18 0.00 0.00 5.73
4312 4357 0.673644 CAGTTTACACAGAGGCCGGG 60.674 60.000 2.18 0.00 0.00 5.73
4313 4358 0.673644 CCAGTTTACACAGAGGCCGG 60.674 60.000 0.00 0.00 0.00 6.13
4314 4359 1.298859 GCCAGTTTACACAGAGGCCG 61.299 60.000 0.00 0.00 33.67 6.13
4315 4360 1.298859 CGCCAGTTTACACAGAGGCC 61.299 60.000 0.00 0.00 35.36 5.19
4316 4361 1.298859 CCGCCAGTTTACACAGAGGC 61.299 60.000 0.00 0.00 35.42 4.70
4317 4362 0.034896 ACCGCCAGTTTACACAGAGG 59.965 55.000 0.00 0.00 0.00 3.69
4318 4363 1.148310 CACCGCCAGTTTACACAGAG 58.852 55.000 0.00 0.00 0.00 3.35
4319 4364 0.250124 CCACCGCCAGTTTACACAGA 60.250 55.000 0.00 0.00 0.00 3.41
4320 4365 1.852067 GCCACCGCCAGTTTACACAG 61.852 60.000 0.00 0.00 0.00 3.66
4321 4366 1.894756 GCCACCGCCAGTTTACACA 60.895 57.895 0.00 0.00 0.00 3.72
4322 4367 2.951458 GCCACCGCCAGTTTACAC 59.049 61.111 0.00 0.00 0.00 2.90
4323 4368 2.666862 CGCCACCGCCAGTTTACA 60.667 61.111 0.00 0.00 0.00 2.41
4324 4369 2.357760 TCGCCACCGCCAGTTTAC 60.358 61.111 0.00 0.00 0.00 2.01
4325 4370 2.357760 GTCGCCACCGCCAGTTTA 60.358 61.111 0.00 0.00 0.00 2.01
4326 4371 3.842925 ATGTCGCCACCGCCAGTTT 62.843 57.895 0.00 0.00 0.00 2.66
4327 4372 4.329545 ATGTCGCCACCGCCAGTT 62.330 61.111 0.00 0.00 0.00 3.16
4328 4373 4.760047 GATGTCGCCACCGCCAGT 62.760 66.667 0.00 0.00 0.00 4.00
4334 4379 2.918230 CTAACCGGGATGTCGCCACC 62.918 65.000 6.32 0.00 0.00 4.61
4335 4380 1.520787 CTAACCGGGATGTCGCCAC 60.521 63.158 6.32 0.00 0.00 5.01
4336 4381 2.897207 CTAACCGGGATGTCGCCA 59.103 61.111 6.32 0.00 0.00 5.69
4337 4382 2.588034 GCTAACCGGGATGTCGCC 60.588 66.667 6.32 0.00 0.00 5.54
4338 4383 2.588034 GGCTAACCGGGATGTCGC 60.588 66.667 6.32 0.00 0.00 5.19
4339 4384 1.227263 CTGGCTAACCGGGATGTCG 60.227 63.158 6.32 0.00 38.86 4.35
4340 4385 4.857251 CTGGCTAACCGGGATGTC 57.143 61.111 6.32 0.00 38.86 3.06
4348 4393 3.477578 GATCCCGGCCTGGCTAACC 62.478 68.421 19.68 0.00 35.87 2.85
4349 4394 2.111251 GATCCCGGCCTGGCTAAC 59.889 66.667 19.68 0.41 35.87 2.34
4350 4395 3.546543 CGATCCCGGCCTGGCTAA 61.547 66.667 19.68 1.94 35.87 3.09
4361 4406 3.846430 GTCACCGTCCCCGATCCC 61.846 72.222 0.00 0.00 35.63 3.85
4362 4407 4.203076 CGTCACCGTCCCCGATCC 62.203 72.222 0.00 0.00 35.63 3.36
4363 4408 3.136123 TCGTCACCGTCCCCGATC 61.136 66.667 0.00 0.00 35.63 3.69
4364 4409 3.446570 GTCGTCACCGTCCCCGAT 61.447 66.667 0.00 0.00 35.63 4.18
4368 4413 3.211564 TTTCCGTCGTCACCGTCCC 62.212 63.158 0.00 0.00 35.01 4.46
4369 4414 2.018324 GTTTCCGTCGTCACCGTCC 61.018 63.158 0.00 0.00 35.01 4.79
4370 4415 2.018324 GGTTTCCGTCGTCACCGTC 61.018 63.158 0.00 0.00 35.01 4.79
4371 4416 2.028043 GGTTTCCGTCGTCACCGT 59.972 61.111 0.00 0.00 35.01 4.83
4372 4417 3.101428 CGGTTTCCGTCGTCACCG 61.101 66.667 11.35 11.35 45.75 4.94
4373 4418 2.735857 CCGGTTTCCGTCGTCACC 60.736 66.667 7.40 0.00 46.80 4.02
4374 4419 2.018324 GTCCGGTTTCCGTCGTCAC 61.018 63.158 0.00 0.00 46.80 3.67
4375 4420 2.336088 GTCCGGTTTCCGTCGTCA 59.664 61.111 0.00 0.00 46.80 4.35
4376 4421 2.431430 GGTCCGGTTTCCGTCGTC 60.431 66.667 0.00 0.00 46.80 4.20
4377 4422 2.914097 AGGTCCGGTTTCCGTCGT 60.914 61.111 0.00 0.00 46.80 4.34
4378 4423 2.431942 CAGGTCCGGTTTCCGTCG 60.432 66.667 0.00 0.00 46.80 5.12
4379 4424 2.741211 GCAGGTCCGGTTTCCGTC 60.741 66.667 0.00 0.69 46.80 4.79
4380 4425 3.239253 AGCAGGTCCGGTTTCCGT 61.239 61.111 0.00 0.00 46.80 4.69
4382 4427 2.198304 ATCCAGCAGGTCCGGTTTCC 62.198 60.000 0.00 2.95 35.89 3.13
4383 4428 0.744771 GATCCAGCAGGTCCGGTTTC 60.745 60.000 0.00 0.00 35.89 2.78
4384 4429 1.299976 GATCCAGCAGGTCCGGTTT 59.700 57.895 0.00 0.00 35.89 3.27
4385 4430 2.990479 GATCCAGCAGGTCCGGTT 59.010 61.111 0.00 0.00 35.89 4.44
4386 4431 3.461773 CGATCCAGCAGGTCCGGT 61.462 66.667 0.00 0.00 35.89 5.28
4387 4432 4.227134 CCGATCCAGCAGGTCCGG 62.227 72.222 14.02 14.02 41.58 5.14
4388 4433 2.635229 CTTCCGATCCAGCAGGTCCG 62.635 65.000 0.00 0.05 35.89 4.79
4389 4434 1.144936 CTTCCGATCCAGCAGGTCC 59.855 63.158 0.00 0.00 35.89 4.46
4390 4435 0.179097 GACTTCCGATCCAGCAGGTC 60.179 60.000 0.00 0.00 35.89 3.85
4391 4436 1.617947 GGACTTCCGATCCAGCAGGT 61.618 60.000 0.00 0.00 36.15 4.00
4392 4437 1.144936 GGACTTCCGATCCAGCAGG 59.855 63.158 0.00 0.00 36.15 4.85
4393 4438 0.103937 GAGGACTTCCGATCCAGCAG 59.896 60.000 0.00 0.00 42.08 4.24
4394 4439 1.330655 GGAGGACTTCCGATCCAGCA 61.331 60.000 0.00 0.00 42.08 4.41
4395 4440 1.443828 GGAGGACTTCCGATCCAGC 59.556 63.158 0.00 0.00 42.08 4.85
4410 4455 4.436998 GCCAGTCGACACCGGGAG 62.437 72.222 19.50 0.00 36.24 4.30
4414 4459 4.742201 CTGGGCCAGTCGACACCG 62.742 72.222 25.74 5.48 37.07 4.94
4415 4460 3.626924 ACTGGGCCAGTCGACACC 61.627 66.667 33.18 15.45 41.21 4.16
5746 7946 1.226542 GGTTTAGCTAGGCCCACCC 59.773 63.158 0.00 0.00 36.11 4.61
5775 7975 6.127980 GCCACCAAATTAAGAAGTACTTCCTC 60.128 42.308 28.05 8.39 40.33 3.71
5776 7976 5.710567 GCCACCAAATTAAGAAGTACTTCCT 59.289 40.000 28.05 19.95 40.33 3.36
5777 7977 5.475564 TGCCACCAAATTAAGAAGTACTTCC 59.524 40.000 28.05 13.12 40.33 3.46
5778 7978 6.569179 TGCCACCAAATTAAGAAGTACTTC 57.431 37.500 25.24 25.24 39.72 3.01
5779 7979 6.128007 CGATGCCACCAAATTAAGAAGTACTT 60.128 38.462 8.13 8.13 42.04 2.24
5783 7983 4.079253 ACGATGCCACCAAATTAAGAAGT 58.921 39.130 0.00 0.00 0.00 3.01
5787 7987 2.164219 AGCACGATGCCACCAAATTAAG 59.836 45.455 6.39 0.00 46.52 1.85
5818 8018 2.245159 TGTCAAAGTGCTCTGTGGAG 57.755 50.000 6.13 0.00 42.18 3.86
5853 8054 9.475620 ACCTCTTTCCTTTATTTATTTTCGGAT 57.524 29.630 0.00 0.00 0.00 4.18
5863 8064 9.147732 ACATCTTGAAACCTCTTTCCTTTATTT 57.852 29.630 0.00 0.00 35.75 1.40
5874 8075 1.425066 TGGGCACATCTTGAAACCTCT 59.575 47.619 0.00 0.00 0.00 3.69
5889 8090 1.484038 GCCATTCTACCATTTGGGCA 58.516 50.000 0.96 0.00 42.05 5.36
5903 8104 2.100252 CAGCTTCAATCGATTGGCCATT 59.900 45.455 32.03 13.94 38.30 3.16
5907 8108 3.492421 TTTCAGCTTCAATCGATTGGC 57.508 42.857 32.03 27.57 38.30 4.52
5909 8110 5.065602 TGGAGATTTCAGCTTCAATCGATTG 59.934 40.000 28.48 28.48 39.10 2.67
5914 8115 5.893897 AACTGGAGATTTCAGCTTCAATC 57.106 39.130 6.54 6.54 35.78 2.67
5921 8122 3.684788 TCGCTAAAACTGGAGATTTCAGC 59.315 43.478 0.00 0.00 35.78 4.26
5950 8151 5.033589 AGAGAAGGATAGGAAATGCACTG 57.966 43.478 0.00 0.00 0.00 3.66
5957 8158 3.964031 GGCTCAGAGAGAAGGATAGGAAA 59.036 47.826 0.00 0.00 0.00 3.13
5969 8170 2.105466 GCTTTGCCGGCTCAGAGAG 61.105 63.158 29.70 12.87 0.00 3.20
5971 8172 1.310933 AATGCTTTGCCGGCTCAGAG 61.311 55.000 29.70 19.48 0.00 3.35
5974 8176 2.964174 CAATGCTTTGCCGGCTCA 59.036 55.556 29.70 19.51 0.00 4.26
5982 8184 7.278203 TGTTTGATACATTATGGCAATGCTTTG 59.722 33.333 4.82 7.93 35.85 2.77
5983 8185 7.329499 TGTTTGATACATTATGGCAATGCTTT 58.671 30.769 4.82 0.00 0.00 3.51
5984 8186 6.876155 TGTTTGATACATTATGGCAATGCTT 58.124 32.000 4.82 0.00 0.00 3.91
5985 8187 6.321945 TCTGTTTGATACATTATGGCAATGCT 59.678 34.615 4.82 0.00 35.85 3.79
5986 8188 6.506147 TCTGTTTGATACATTATGGCAATGC 58.494 36.000 0.00 0.00 35.85 3.56
6071 8398 2.594592 GCTGCACGGGGAAACTGT 60.595 61.111 0.00 0.00 40.00 3.55
6074 8401 0.033366 AAATTGCTGCACGGGGAAAC 59.967 50.000 0.00 0.00 0.00 2.78
6075 8402 0.316841 GAAATTGCTGCACGGGGAAA 59.683 50.000 0.00 0.00 0.00 3.13
6076 8403 1.531739 GGAAATTGCTGCACGGGGAA 61.532 55.000 0.00 0.00 0.00 3.97
6077 8404 1.976474 GGAAATTGCTGCACGGGGA 60.976 57.895 0.00 0.00 0.00 4.81
6140 8467 6.014242 ACCGTCATATGACAAGTATGGATGAT 60.014 38.462 30.15 8.04 44.99 2.45
6154 8481 5.127194 ACTTCTAAAGCAGACCGTCATATGA 59.873 40.000 0.00 0.00 31.12 2.15
6162 8489 3.056465 AGGAGAACTTCTAAAGCAGACCG 60.056 47.826 0.00 0.00 31.12 4.79
6164 8491 5.047660 TGAGAGGAGAACTTCTAAAGCAGAC 60.048 44.000 0.00 0.00 32.63 3.51
6187 8514 6.086222 GGTGATTATGTGCTGTTACAGTTTG 58.914 40.000 14.23 0.00 33.44 2.93
6191 8518 4.201851 GCTGGTGATTATGTGCTGTTACAG 60.202 45.833 8.18 8.18 33.44 2.74
6196 8523 2.795231 AGCTGGTGATTATGTGCTGT 57.205 45.000 0.00 0.00 0.00 4.40
6199 8526 4.274459 CCTCTTAAGCTGGTGATTATGTGC 59.726 45.833 0.00 0.00 0.00 4.57
6207 8534 1.742308 AACCCCTCTTAAGCTGGTGA 58.258 50.000 10.08 0.00 0.00 4.02
6214 8541 7.996098 TGAACTTCATAAAACCCCTCTTAAG 57.004 36.000 0.00 0.00 0.00 1.85
6216 8543 8.167392 TCAATGAACTTCATAAAACCCCTCTTA 58.833 33.333 4.65 0.00 35.76 2.10
6217 8544 7.010160 TCAATGAACTTCATAAAACCCCTCTT 58.990 34.615 4.65 0.00 35.76 2.85
6221 8548 7.035612 GTCATCAATGAACTTCATAAAACCCC 58.964 38.462 4.65 0.00 35.76 4.95
6252 8579 5.643777 GCCTGTGAGAAATACACAAGTATGT 59.356 40.000 0.00 0.00 45.49 2.29
6262 8589 3.125316 CGAAACCAGCCTGTGAGAAATAC 59.875 47.826 0.00 0.00 0.00 1.89
6286 8613 1.904287 TGTAACCCACTGTTGCCATC 58.096 50.000 0.00 0.00 38.64 3.51
6376 8703 3.731216 CGTTTGGACTGCTATCGTCATAG 59.269 47.826 0.00 0.00 35.86 2.23
6460 8787 4.808414 ATCAAGAGAAATGAGGTCGACA 57.192 40.909 18.91 0.00 0.00 4.35
6745 9072 9.758651 CACATTAGTGTATAACAGGCATAAGTA 57.241 33.333 0.00 0.00 40.92 2.24
6834 9161 4.932268 CGTAGCCGGTTTCATCTTTAAA 57.068 40.909 1.90 0.00 0.00 1.52
6905 9232 9.305555 ACTTACTAACTCTACACACAAGGATTA 57.694 33.333 0.00 0.00 0.00 1.75
6906 9233 8.191534 ACTTACTAACTCTACACACAAGGATT 57.808 34.615 0.00 0.00 0.00 3.01
6986 9313 4.591321 ATTCTTGGGCAGGAACTTGATA 57.409 40.909 0.00 0.00 34.60 2.15
6995 9322 1.101331 GAGAGCAATTCTTGGGCAGG 58.899 55.000 0.00 0.00 35.87 4.85
7052 9379 9.868277 AGTTCAAAATAAATAAATCATGGCGAA 57.132 25.926 0.00 0.00 0.00 4.70
7125 9452 6.900194 AGCCTGCTAGGAGAATTATTTGTAA 58.100 36.000 13.63 0.00 37.67 2.41
7129 9606 5.072329 TGCTAGCCTGCTAGGAGAATTATTT 59.928 40.000 23.61 0.00 44.48 1.40
7140 9617 3.692257 AATATGGTGCTAGCCTGCTAG 57.308 47.619 19.48 19.48 46.41 3.42
7141 9618 4.777366 TGATAATATGGTGCTAGCCTGCTA 59.223 41.667 13.29 0.71 0.00 3.49
7142 9619 3.584406 TGATAATATGGTGCTAGCCTGCT 59.416 43.478 13.29 0.00 0.00 4.24
7143 9620 3.942829 TGATAATATGGTGCTAGCCTGC 58.057 45.455 13.29 2.22 0.00 4.85
7144 9621 5.987098 AGATGATAATATGGTGCTAGCCTG 58.013 41.667 13.29 0.00 0.00 4.85
7145 9622 6.669591 TGTAGATGATAATATGGTGCTAGCCT 59.330 38.462 13.29 0.00 0.00 4.58
7146 9623 6.878317 TGTAGATGATAATATGGTGCTAGCC 58.122 40.000 13.29 3.27 0.00 3.93
7147 9624 6.983307 CCTGTAGATGATAATATGGTGCTAGC 59.017 42.308 8.10 8.10 0.00 3.42
7154 9631 6.715280 ACCTTGCCTGTAGATGATAATATGG 58.285 40.000 0.00 0.00 0.00 2.74
7211 9688 2.045926 GCATCCACCGCCTTGTCT 60.046 61.111 0.00 0.00 0.00 3.41
7246 9723 4.599041 ACAAAGTATGAAGGGCAGCATAA 58.401 39.130 0.00 0.00 0.00 1.90
7289 9768 5.291128 CCAAGATCTAACGGTGTTGTACATC 59.709 44.000 0.00 0.00 0.00 3.06
7302 9781 6.705863 AAATCAATGGCTCCAAGATCTAAC 57.294 37.500 0.00 0.00 0.00 2.34
7530 10036 7.175990 CGCCATTTTGGTAAGGTTATATATGGT 59.824 37.037 0.00 0.00 40.46 3.55
7532 10038 8.106247 ACGCCATTTTGGTAAGGTTATATATG 57.894 34.615 0.00 0.00 40.46 1.78
7534 10040 6.711645 GGACGCCATTTTGGTAAGGTTATATA 59.288 38.462 0.00 0.00 40.46 0.86
7535 10041 5.533528 GGACGCCATTTTGGTAAGGTTATAT 59.466 40.000 0.00 0.00 40.46 0.86
7536 10042 4.883006 GGACGCCATTTTGGTAAGGTTATA 59.117 41.667 0.00 0.00 40.46 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.