Multiple sequence alignment - TraesCS1D01G111900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G111900 | chr1D | 100.000 | 5581 | 0 | 0 | 1 | 5581 | 107221303 | 107215723 | 0.000000e+00 | 10307 |
1 | TraesCS1D01G111900 | chr1D | 93.056 | 72 | 5 | 0 | 3338 | 3409 | 311688847 | 311688918 | 7.650000e-19 | 106 |
2 | TraesCS1D01G111900 | chr1B | 94.195 | 4083 | 158 | 41 | 263 | 4331 | 159384173 | 159388190 | 0.000000e+00 | 6154 |
3 | TraesCS1D01G111900 | chr1B | 94.536 | 366 | 17 | 3 | 4765 | 5129 | 159394399 | 159394762 | 3.780000e-156 | 562 |
4 | TraesCS1D01G111900 | chr1B | 97.122 | 278 | 8 | 0 | 4412 | 4689 | 159388311 | 159388588 | 2.350000e-128 | 470 |
5 | TraesCS1D01G111900 | chr1B | 97.382 | 191 | 4 | 1 | 4687 | 4877 | 159388749 | 159388938 | 1.940000e-84 | 324 |
6 | TraesCS1D01G111900 | chr1B | 93.103 | 174 | 9 | 1 | 5408 | 5581 | 159394830 | 159395000 | 9.280000e-63 | 252 |
7 | TraesCS1D01G111900 | chr1B | 92.105 | 76 | 6 | 0 | 3339 | 3414 | 491083411 | 491083486 | 2.130000e-19 | 108 |
8 | TraesCS1D01G111900 | chr1A | 96.731 | 3304 | 90 | 11 | 1123 | 4413 | 109986225 | 109982927 | 0.000000e+00 | 5487 |
9 | TraesCS1D01G111900 | chr1A | 92.633 | 733 | 31 | 7 | 369 | 1079 | 109987176 | 109986445 | 0.000000e+00 | 1033 |
10 | TraesCS1D01G111900 | chr1A | 91.787 | 694 | 45 | 11 | 4412 | 5101 | 109982833 | 109982148 | 0.000000e+00 | 955 |
11 | TraesCS1D01G111900 | chr1A | 89.809 | 157 | 12 | 4 | 23 | 176 | 109987642 | 109987487 | 1.230000e-46 | 198 |
12 | TraesCS1D01G111900 | chr6A | 88.293 | 205 | 22 | 2 | 5188 | 5392 | 616797217 | 616797419 | 1.550000e-60 | 244 |
13 | TraesCS1D01G111900 | chr2B | 88.293 | 205 | 22 | 2 | 5188 | 5392 | 13039614 | 13039816 | 1.550000e-60 | 244 |
14 | TraesCS1D01G111900 | chr2B | 86.058 | 208 | 25 | 4 | 5188 | 5395 | 718636341 | 718636138 | 2.620000e-53 | 220 |
15 | TraesCS1D01G111900 | chr2B | 86.058 | 208 | 22 | 7 | 5188 | 5392 | 152873165 | 152872962 | 3.390000e-52 | 217 |
16 | TraesCS1D01G111900 | chr5B | 87.317 | 205 | 24 | 2 | 5188 | 5392 | 468869849 | 468869647 | 3.360000e-57 | 233 |
17 | TraesCS1D01G111900 | chr5B | 87.081 | 209 | 24 | 3 | 5188 | 5395 | 541163377 | 541163171 | 3.360000e-57 | 233 |
18 | TraesCS1D01G111900 | chr7D | 87.192 | 203 | 24 | 2 | 5188 | 5390 | 593699137 | 593699337 | 4.350000e-56 | 230 |
19 | TraesCS1D01G111900 | chr7D | 97.015 | 67 | 1 | 1 | 3344 | 3409 | 204247205 | 204247271 | 1.640000e-20 | 111 |
20 | TraesCS1D01G111900 | chr7D | 94.286 | 70 | 4 | 0 | 3344 | 3413 | 20238992 | 20239061 | 2.130000e-19 | 108 |
21 | TraesCS1D01G111900 | chr4B | 86.341 | 205 | 26 | 2 | 5188 | 5392 | 97054701 | 97054499 | 7.280000e-54 | 222 |
22 | TraesCS1D01G111900 | chr7B | 85.437 | 206 | 27 | 3 | 5188 | 5392 | 627284820 | 627285023 | 1.580000e-50 | 211 |
23 | TraesCS1D01G111900 | chr4A | 94.667 | 75 | 3 | 1 | 3344 | 3417 | 626981560 | 626981486 | 1.270000e-21 | 115 |
24 | TraesCS1D01G111900 | chr6B | 94.366 | 71 | 4 | 0 | 3342 | 3412 | 462028698 | 462028628 | 5.910000e-20 | 110 |
25 | TraesCS1D01G111900 | chr3B | 93.333 | 75 | 4 | 1 | 3344 | 3417 | 672774673 | 672774747 | 5.910000e-20 | 110 |
26 | TraesCS1D01G111900 | chr7A | 94.286 | 70 | 4 | 0 | 3344 | 3413 | 20293288 | 20293357 | 2.130000e-19 | 108 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G111900 | chr1D | 107215723 | 107221303 | 5580 | True | 10307.00 | 10307 | 100.0000 | 1 | 5581 | 1 | chr1D.!!$R1 | 5580 |
1 | TraesCS1D01G111900 | chr1B | 159384173 | 159388938 | 4765 | False | 2316.00 | 6154 | 96.2330 | 263 | 4877 | 3 | chr1B.!!$F2 | 4614 |
2 | TraesCS1D01G111900 | chr1B | 159394399 | 159395000 | 601 | False | 407.00 | 562 | 93.8195 | 4765 | 5581 | 2 | chr1B.!!$F3 | 816 |
3 | TraesCS1D01G111900 | chr1A | 109982148 | 109987642 | 5494 | True | 1918.25 | 5487 | 92.7400 | 23 | 5101 | 4 | chr1A.!!$R1 | 5078 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
362 | 364 | 0.036388 | CTTCGCCAGCTGGACCTTTA | 60.036 | 55.000 | 37.21 | 12.91 | 37.39 | 1.85 | F |
637 | 797 | 0.036952 | CTTGCACCGAGAGACCATGT | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 | F |
663 | 823 | 0.951558 | ACACACCGAATGAAACTGCC | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 | F |
1080 | 1240 | 1.131315 | GATTGAGCGGCCTCTGTTTTC | 59.869 | 52.381 | 0.00 | 0.00 | 38.93 | 2.29 | F |
1401 | 1742 | 1.205893 | CTCTTTGGAGAGGAGGGTTCG | 59.794 | 57.143 | 0.00 | 0.00 | 44.69 | 3.95 | F |
2772 | 3115 | 4.286910 | CACAATTGGTAAAGTTGTCGGTG | 58.713 | 43.478 | 10.83 | 0.00 | 34.09 | 4.94 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1449 | 1790 | 0.581529 | CGTTTTCTCAAGAGCACGCA | 59.418 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 | R |
1534 | 1875 | 1.374560 | TCACAAACACAGTTCCACCG | 58.625 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 | R |
1908 | 2249 | 3.975035 | GTGCCTTCTTTTGCTCTTTAACG | 59.025 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 | R |
1909 | 2250 | 5.188327 | AGTGCCTTCTTTTGCTCTTTAAC | 57.812 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 | R |
3429 | 3777 | 8.748380 | AGTTTTGCATTAATAAGCAGAGAAAC | 57.252 | 30.769 | 13.49 | 13.49 | 42.39 | 2.78 | R |
4698 | 5332 | 1.416401 | AGCTCCGACTTTGTTCTTCCA | 59.584 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.426023 | GTAGCCCCGTAGCCATGG | 59.574 | 66.667 | 7.63 | 7.63 | 0.00 | 3.66 |
18 | 19 | 3.556306 | TAGCCCCGTAGCCATGGC | 61.556 | 66.667 | 30.12 | 30.12 | 44.35 | 4.40 |
30 | 31 | 1.524621 | CCATGGCCGTAGCTTGGAG | 60.525 | 63.158 | 0.00 | 0.00 | 41.80 | 3.86 |
39 | 40 | 2.168521 | CCGTAGCTTGGAGAGGAAATCA | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
192 | 194 | 3.930012 | GATCGGAAGGGGGCGAGG | 61.930 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
193 | 195 | 4.475444 | ATCGGAAGGGGGCGAGGA | 62.475 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
197 | 199 | 2.042843 | GAAGGGGGCGAGGAGAGA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 3.10 |
198 | 200 | 1.686110 | GAAGGGGGCGAGGAGAGAA | 60.686 | 63.158 | 0.00 | 0.00 | 0.00 | 2.87 |
201 | 203 | 2.042843 | GGGGCGAGGAGAGAAGGA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
203 | 205 | 2.791868 | GGGCGAGGAGAGAAGGAGC | 61.792 | 68.421 | 0.00 | 0.00 | 0.00 | 4.70 |
206 | 208 | 2.485795 | CGAGGAGAGAAGGAGCGGG | 61.486 | 68.421 | 0.00 | 0.00 | 0.00 | 6.13 |
207 | 209 | 1.076632 | GAGGAGAGAAGGAGCGGGA | 60.077 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
208 | 210 | 1.380650 | AGGAGAGAAGGAGCGGGAC | 60.381 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
209 | 211 | 1.682684 | GGAGAGAAGGAGCGGGACA | 60.683 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
210 | 212 | 1.258445 | GGAGAGAAGGAGCGGGACAA | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
211 | 213 | 0.108567 | GAGAGAAGGAGCGGGACAAC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.32 |
212 | 214 | 1.079057 | GAGAAGGAGCGGGACAACC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
213 | 215 | 1.827399 | GAGAAGGAGCGGGACAACCA | 61.827 | 60.000 | 0.00 | 0.00 | 40.22 | 3.67 |
214 | 216 | 1.376037 | GAAGGAGCGGGACAACCAG | 60.376 | 63.158 | 0.00 | 0.00 | 40.22 | 4.00 |
215 | 217 | 1.827399 | GAAGGAGCGGGACAACCAGA | 61.827 | 60.000 | 0.00 | 0.00 | 40.22 | 3.86 |
216 | 218 | 1.201429 | AAGGAGCGGGACAACCAGAT | 61.201 | 55.000 | 0.00 | 0.00 | 40.22 | 2.90 |
217 | 219 | 1.153349 | GGAGCGGGACAACCAGATC | 60.153 | 63.158 | 0.00 | 0.00 | 43.83 | 2.75 |
218 | 220 | 1.153349 | GAGCGGGACAACCAGATCC | 60.153 | 63.158 | 0.00 | 0.00 | 40.00 | 3.36 |
219 | 221 | 1.899437 | GAGCGGGACAACCAGATCCA | 61.899 | 60.000 | 0.00 | 0.00 | 40.00 | 3.41 |
220 | 222 | 1.745489 | GCGGGACAACCAGATCCAC | 60.745 | 63.158 | 0.00 | 0.00 | 40.22 | 4.02 |
221 | 223 | 1.676968 | CGGGACAACCAGATCCACA | 59.323 | 57.895 | 0.00 | 0.00 | 40.22 | 4.17 |
222 | 224 | 0.673644 | CGGGACAACCAGATCCACAC | 60.674 | 60.000 | 0.00 | 0.00 | 40.22 | 3.82 |
223 | 225 | 0.322546 | GGGACAACCAGATCCACACC | 60.323 | 60.000 | 0.00 | 0.00 | 39.85 | 4.16 |
224 | 226 | 0.400213 | GGACAACCAGATCCACACCA | 59.600 | 55.000 | 0.00 | 0.00 | 34.87 | 4.17 |
225 | 227 | 1.611673 | GGACAACCAGATCCACACCAG | 60.612 | 57.143 | 0.00 | 0.00 | 34.87 | 4.00 |
226 | 228 | 0.250901 | ACAACCAGATCCACACCAGC | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
291 | 293 | 4.451150 | GCCGACGCCAGGACATCA | 62.451 | 66.667 | 0.00 | 0.00 | 0.00 | 3.07 |
292 | 294 | 2.509336 | CCGACGCCAGGACATCAC | 60.509 | 66.667 | 0.00 | 0.00 | 0.00 | 3.06 |
293 | 295 | 2.573869 | CGACGCCAGGACATCACT | 59.426 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
294 | 296 | 1.807165 | CGACGCCAGGACATCACTG | 60.807 | 63.158 | 0.00 | 0.00 | 35.74 | 3.66 |
296 | 298 | 2.046988 | CGCCAGGACATCACTGCA | 60.047 | 61.111 | 0.00 | 0.00 | 34.65 | 4.41 |
298 | 300 | 1.002868 | GCCAGGACATCACTGCACT | 60.003 | 57.895 | 0.00 | 0.00 | 34.65 | 4.40 |
299 | 301 | 1.303799 | GCCAGGACATCACTGCACTG | 61.304 | 60.000 | 0.00 | 0.00 | 34.65 | 3.66 |
314 | 316 | 0.401738 | CACTGAGGGAAAAGGCCTCA | 59.598 | 55.000 | 5.23 | 0.00 | 38.12 | 3.86 |
334 | 336 | 3.364441 | GCCGCCTTCACATGCACA | 61.364 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
360 | 362 | 2.348998 | CTTCGCCAGCTGGACCTT | 59.651 | 61.111 | 37.21 | 0.00 | 37.39 | 3.50 |
362 | 364 | 0.036388 | CTTCGCCAGCTGGACCTTTA | 60.036 | 55.000 | 37.21 | 12.91 | 37.39 | 1.85 |
433 | 590 | 2.203640 | ACAGAGGCGACACAGGGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
448 | 605 | 1.014804 | AGGGAGGAGGTGATCTCAGT | 58.985 | 55.000 | 0.00 | 0.00 | 44.19 | 3.41 |
456 | 613 | 2.693074 | GAGGTGATCTCAGTCTCTTCCC | 59.307 | 54.545 | 0.00 | 0.00 | 42.02 | 3.97 |
559 | 718 | 8.378421 | GTGTATTTCACTCGGTAAATTCTGTAC | 58.622 | 37.037 | 0.00 | 0.00 | 43.13 | 2.90 |
617 | 777 | 2.806945 | TTCAAATCCGATGGCCTCTT | 57.193 | 45.000 | 3.32 | 0.00 | 0.00 | 2.85 |
637 | 797 | 0.036952 | CTTGCACCGAGAGACCATGT | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
643 | 803 | 1.339824 | ACCGAGAGACCATGTCGTACT | 60.340 | 52.381 | 2.53 | 0.00 | 42.88 | 2.73 |
663 | 823 | 0.951558 | ACACACCGAATGAAACTGCC | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
751 | 911 | 4.193334 | GCAAAATCCCTCGCCGCC | 62.193 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1076 | 1236 | 2.185350 | CGATTGAGCGGCCTCTGT | 59.815 | 61.111 | 0.00 | 0.00 | 38.93 | 3.41 |
1079 | 1239 | 1.168714 | GATTGAGCGGCCTCTGTTTT | 58.831 | 50.000 | 0.00 | 0.00 | 38.93 | 2.43 |
1080 | 1240 | 1.131315 | GATTGAGCGGCCTCTGTTTTC | 59.869 | 52.381 | 0.00 | 0.00 | 38.93 | 2.29 |
1084 | 1244 | 3.431725 | CGGCCTCTGTTTTCCGGC | 61.432 | 66.667 | 0.00 | 0.00 | 41.75 | 6.13 |
1089 | 1249 | 1.599797 | CTCTGTTTTCCGGCGGGTT | 60.600 | 57.895 | 27.98 | 0.00 | 33.83 | 4.11 |
1248 | 1585 | 2.743179 | GGTGAGATCCCCCGTTCCC | 61.743 | 68.421 | 0.00 | 0.00 | 0.00 | 3.97 |
1346 | 1687 | 4.772100 | AGATGGTTGTATTTTTGGGGTCAG | 59.228 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1358 | 1699 | 1.559682 | TGGGGTCAGGTAGAGCAATTC | 59.440 | 52.381 | 0.00 | 0.00 | 46.51 | 2.17 |
1401 | 1742 | 1.205893 | CTCTTTGGAGAGGAGGGTTCG | 59.794 | 57.143 | 0.00 | 0.00 | 44.69 | 3.95 |
1703 | 2044 | 8.087982 | TCTGCAACAGACTAATAAAGAACAAG | 57.912 | 34.615 | 0.00 | 0.00 | 35.39 | 3.16 |
1707 | 2048 | 9.170584 | GCAACAGACTAATAAAGAACAAGTTTC | 57.829 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
1731 | 2072 | 6.376299 | TCCAAGAATGATCTGGATTTTCAGTG | 59.624 | 38.462 | 0.00 | 0.00 | 35.59 | 3.66 |
1908 | 2249 | 7.441458 | AGAAAGTAGTTGTATCCACTCACAAAC | 59.559 | 37.037 | 0.00 | 0.00 | 36.47 | 2.93 |
1909 | 2250 | 5.227908 | AGTAGTTGTATCCACTCACAAACG | 58.772 | 41.667 | 0.00 | 0.00 | 36.47 | 3.60 |
2260 | 2602 | 4.922206 | TGCTACAGACATTTCCCATTTCT | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2321 | 2663 | 5.726980 | ATGTTATGGTGCAACATGTCTTT | 57.273 | 34.783 | 27.55 | 2.54 | 43.27 | 2.52 |
2772 | 3115 | 4.286910 | CACAATTGGTAAAGTTGTCGGTG | 58.713 | 43.478 | 10.83 | 0.00 | 34.09 | 4.94 |
2784 | 3127 | 5.128992 | AGTTGTCGGTGTTTTTCAAAAGT | 57.871 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
3099 | 3446 | 7.872483 | ACTTCAGCAACCAAGGTTTAATATTTG | 59.128 | 33.333 | 0.79 | 0.00 | 36.00 | 2.32 |
3106 | 3453 | 8.921670 | CAACCAAGGTTTAATATTTGTTACTGC | 58.078 | 33.333 | 0.79 | 0.00 | 36.00 | 4.40 |
3670 | 4018 | 3.517038 | AAGGTACCTGCCACCCCCT | 62.517 | 63.158 | 17.14 | 0.00 | 36.67 | 4.79 |
3721 | 4069 | 2.554032 | AGTTGCTGCTTGGTGATGTAAC | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
3970 | 4321 | 1.605738 | CCTGGCAGCCTTTCAGCTT | 60.606 | 57.895 | 14.15 | 0.00 | 42.61 | 3.74 |
4349 | 4725 | 2.486472 | AGTTTCTCACAGGCTGATGG | 57.514 | 50.000 | 23.66 | 10.28 | 0.00 | 3.51 |
4353 | 4729 | 0.179702 | TCTCACAGGCTGATGGATGC | 59.820 | 55.000 | 23.66 | 0.00 | 0.00 | 3.91 |
4371 | 4747 | 1.002659 | TGCCGTATTGTTAGCCACAGT | 59.997 | 47.619 | 0.00 | 0.00 | 36.48 | 3.55 |
4648 | 5119 | 3.008594 | CACCTTGTATTCTGGTGGGTACA | 59.991 | 47.826 | 0.00 | 0.00 | 45.29 | 2.90 |
4683 | 5154 | 3.837213 | AAGTGCAACCGAATGATCAAG | 57.163 | 42.857 | 0.00 | 0.00 | 37.80 | 3.02 |
4690 | 5324 | 5.182950 | TGCAACCGAATGATCAAGTGTAATT | 59.817 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4698 | 5332 | 9.825972 | CGAATGATCAAGTGTAATTTGTAAAGT | 57.174 | 29.630 | 0.00 | 0.00 | 34.82 | 2.66 |
4877 | 5514 | 3.497103 | TGAGATGGGTGCAGATTATGG | 57.503 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
4962 | 5600 | 4.165565 | TCTCTCACCCTCGAATCCTAACTA | 59.834 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
4982 | 5620 | 1.895798 | AGTAGCAGTAGAGCAGCACAA | 59.104 | 47.619 | 0.00 | 0.00 | 36.85 | 3.33 |
4999 | 5637 | 0.326238 | CAAGTGGGGAGGTAGGGCTA | 60.326 | 60.000 | 0.00 | 0.00 | 0.00 | 3.93 |
5019 | 5657 | 1.353694 | AGAGAAATGCCAAGACTGCCT | 59.646 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
5026 | 5664 | 4.778213 | ATGCCAAGACTGCCTTCTAATA | 57.222 | 40.909 | 0.00 | 0.00 | 31.42 | 0.98 |
5042 | 5680 | 0.469917 | AATATGGCGCCACTGCTACT | 59.530 | 50.000 | 35.50 | 17.37 | 34.43 | 2.57 |
5101 | 5739 | 4.095334 | TGCAACATAGAATAGCAACAGCAG | 59.905 | 41.667 | 0.00 | 0.00 | 31.42 | 4.24 |
5158 | 5832 | 5.144100 | ACATAAAGGTCAATCCACAAACCA | 58.856 | 37.500 | 0.00 | 0.00 | 39.02 | 3.67 |
5165 | 5839 | 7.645058 | AGGTCAATCCACAAACCATAATAAG | 57.355 | 36.000 | 0.00 | 0.00 | 39.02 | 1.73 |
5166 | 5840 | 7.182060 | AGGTCAATCCACAAACCATAATAAGT | 58.818 | 34.615 | 0.00 | 0.00 | 39.02 | 2.24 |
5167 | 5841 | 7.339466 | AGGTCAATCCACAAACCATAATAAGTC | 59.661 | 37.037 | 0.00 | 0.00 | 39.02 | 3.01 |
5168 | 5842 | 7.186804 | GTCAATCCACAAACCATAATAAGTCG | 58.813 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
5169 | 5843 | 6.317642 | TCAATCCACAAACCATAATAAGTCGG | 59.682 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
5170 | 5844 | 5.423704 | TCCACAAACCATAATAAGTCGGA | 57.576 | 39.130 | 0.00 | 0.00 | 0.00 | 4.55 |
5171 | 5845 | 5.996644 | TCCACAAACCATAATAAGTCGGAT | 58.003 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
5172 | 5846 | 6.419791 | TCCACAAACCATAATAAGTCGGATT | 58.580 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5173 | 5847 | 6.887545 | TCCACAAACCATAATAAGTCGGATTT | 59.112 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
5174 | 5848 | 6.972328 | CCACAAACCATAATAAGTCGGATTTG | 59.028 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
5175 | 5849 | 6.472163 | CACAAACCATAATAAGTCGGATTTGC | 59.528 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
5176 | 5850 | 6.377146 | ACAAACCATAATAAGTCGGATTTGCT | 59.623 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
5177 | 5851 | 7.093945 | ACAAACCATAATAAGTCGGATTTGCTT | 60.094 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
5178 | 5852 | 6.377327 | ACCATAATAAGTCGGATTTGCTTG | 57.623 | 37.500 | 0.00 | 0.00 | 0.00 | 4.01 |
5179 | 5853 | 5.215160 | CCATAATAAGTCGGATTTGCTTGC | 58.785 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
5180 | 5854 | 5.009010 | CCATAATAAGTCGGATTTGCTTGCT | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
5181 | 5855 | 4.622701 | AATAAGTCGGATTTGCTTGCTC | 57.377 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
5182 | 5856 | 0.798776 | AAGTCGGATTTGCTTGCTCG | 59.201 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
5183 | 5857 | 1.021390 | AGTCGGATTTGCTTGCTCGG | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5184 | 5858 | 1.019278 | GTCGGATTTGCTTGCTCGGA | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
5185 | 5859 | 1.019278 | TCGGATTTGCTTGCTCGGAC | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5186 | 5860 | 1.021390 | CGGATTTGCTTGCTCGGACT | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5187 | 5861 | 0.729690 | GGATTTGCTTGCTCGGACTC | 59.270 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5188 | 5862 | 0.371645 | GATTTGCTTGCTCGGACTCG | 59.628 | 55.000 | 0.00 | 0.00 | 37.82 | 4.18 |
5189 | 5863 | 1.639298 | ATTTGCTTGCTCGGACTCGC | 61.639 | 55.000 | 0.00 | 0.00 | 36.13 | 5.03 |
5190 | 5864 | 4.742201 | TGCTTGCTCGGACTCGCC | 62.742 | 66.667 | 0.00 | 0.00 | 36.13 | 5.54 |
5191 | 5865 | 4.443266 | GCTTGCTCGGACTCGCCT | 62.443 | 66.667 | 0.00 | 0.00 | 36.13 | 5.52 |
5192 | 5866 | 2.507992 | CTTGCTCGGACTCGCCTG | 60.508 | 66.667 | 0.00 | 0.00 | 36.13 | 4.85 |
5193 | 5867 | 3.288308 | CTTGCTCGGACTCGCCTGT | 62.288 | 63.158 | 0.00 | 0.00 | 36.13 | 4.00 |
5194 | 5868 | 2.771763 | CTTGCTCGGACTCGCCTGTT | 62.772 | 60.000 | 0.00 | 0.00 | 36.13 | 3.16 |
5195 | 5869 | 2.048127 | GCTCGGACTCGCCTGTTT | 60.048 | 61.111 | 0.00 | 0.00 | 36.13 | 2.83 |
5196 | 5870 | 2.383527 | GCTCGGACTCGCCTGTTTG | 61.384 | 63.158 | 0.00 | 0.00 | 36.13 | 2.93 |
5197 | 5871 | 1.738099 | CTCGGACTCGCCTGTTTGG | 60.738 | 63.158 | 0.00 | 0.00 | 39.35 | 3.28 |
5198 | 5872 | 2.742372 | CGGACTCGCCTGTTTGGG | 60.742 | 66.667 | 0.00 | 0.00 | 36.00 | 4.12 |
5206 | 5880 | 3.439440 | GCCTGTTTGGGGAGAAAGT | 57.561 | 52.632 | 0.00 | 0.00 | 36.00 | 2.66 |
5207 | 5881 | 0.961753 | GCCTGTTTGGGGAGAAAGTG | 59.038 | 55.000 | 0.00 | 0.00 | 36.00 | 3.16 |
5208 | 5882 | 1.478654 | GCCTGTTTGGGGAGAAAGTGA | 60.479 | 52.381 | 0.00 | 0.00 | 36.00 | 3.41 |
5209 | 5883 | 2.819348 | GCCTGTTTGGGGAGAAAGTGAT | 60.819 | 50.000 | 0.00 | 0.00 | 36.00 | 3.06 |
5210 | 5884 | 2.821969 | CCTGTTTGGGGAGAAAGTGATG | 59.178 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
5211 | 5885 | 3.498481 | CCTGTTTGGGGAGAAAGTGATGA | 60.498 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
5212 | 5886 | 3.486383 | TGTTTGGGGAGAAAGTGATGAC | 58.514 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
5213 | 5887 | 2.472695 | TTGGGGAGAAAGTGATGACG | 57.527 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5214 | 5888 | 1.639722 | TGGGGAGAAAGTGATGACGA | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5215 | 5889 | 2.187958 | TGGGGAGAAAGTGATGACGAT | 58.812 | 47.619 | 0.00 | 0.00 | 0.00 | 3.73 |
5216 | 5890 | 2.093500 | TGGGGAGAAAGTGATGACGATG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
5217 | 5891 | 2.168521 | GGGGAGAAAGTGATGACGATGA | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
5218 | 5892 | 3.190874 | GGGAGAAAGTGATGACGATGAC | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5219 | 5893 | 2.854777 | GGAGAAAGTGATGACGATGACG | 59.145 | 50.000 | 0.00 | 0.00 | 45.75 | 4.35 |
5220 | 5894 | 2.263077 | AGAAAGTGATGACGATGACGC | 58.737 | 47.619 | 0.00 | 0.00 | 43.96 | 5.19 |
5221 | 5895 | 2.094494 | AGAAAGTGATGACGATGACGCT | 60.094 | 45.455 | 0.00 | 0.00 | 43.96 | 5.07 |
5222 | 5896 | 2.370281 | AAGTGATGACGATGACGCTT | 57.630 | 45.000 | 0.00 | 0.00 | 43.96 | 4.68 |
5223 | 5897 | 1.633561 | AGTGATGACGATGACGCTTG | 58.366 | 50.000 | 0.00 | 0.00 | 43.96 | 4.01 |
5224 | 5898 | 1.067565 | AGTGATGACGATGACGCTTGT | 60.068 | 47.619 | 0.00 | 0.00 | 43.96 | 3.16 |
5225 | 5899 | 1.059692 | GTGATGACGATGACGCTTGTG | 59.940 | 52.381 | 0.00 | 0.00 | 43.96 | 3.33 |
5226 | 5900 | 1.336795 | TGATGACGATGACGCTTGTGT | 60.337 | 47.619 | 0.00 | 0.00 | 43.96 | 3.72 |
5227 | 5901 | 1.059692 | GATGACGATGACGCTTGTGTG | 59.940 | 52.381 | 0.00 | 0.00 | 43.96 | 3.82 |
5228 | 5902 | 1.130613 | GACGATGACGCTTGTGTGC | 59.869 | 57.895 | 0.00 | 0.00 | 43.96 | 4.57 |
5229 | 5903 | 1.284982 | GACGATGACGCTTGTGTGCT | 61.285 | 55.000 | 0.00 | 0.00 | 43.96 | 4.40 |
5230 | 5904 | 0.038618 | ACGATGACGCTTGTGTGCTA | 60.039 | 50.000 | 0.00 | 0.00 | 43.96 | 3.49 |
5231 | 5905 | 0.642291 | CGATGACGCTTGTGTGCTAG | 59.358 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
5232 | 5906 | 0.371645 | GATGACGCTTGTGTGCTAGC | 59.628 | 55.000 | 8.10 | 8.10 | 39.50 | 3.42 |
5233 | 5907 | 0.036952 | ATGACGCTTGTGTGCTAGCT | 60.037 | 50.000 | 17.23 | 0.00 | 40.45 | 3.32 |
5234 | 5908 | 0.667487 | TGACGCTTGTGTGCTAGCTC | 60.667 | 55.000 | 17.23 | 13.38 | 40.45 | 4.09 |
5235 | 5909 | 1.678269 | GACGCTTGTGTGCTAGCTCG | 61.678 | 60.000 | 17.23 | 9.85 | 40.45 | 5.03 |
5236 | 5910 | 1.444383 | CGCTTGTGTGCTAGCTCGA | 60.444 | 57.895 | 17.23 | 5.69 | 40.45 | 4.04 |
5237 | 5911 | 1.678269 | CGCTTGTGTGCTAGCTCGAC | 61.678 | 60.000 | 17.23 | 13.04 | 40.45 | 4.20 |
5238 | 5912 | 1.678269 | GCTTGTGTGCTAGCTCGACG | 61.678 | 60.000 | 17.23 | 2.36 | 39.71 | 5.12 |
5239 | 5913 | 1.073216 | CTTGTGTGCTAGCTCGACGG | 61.073 | 60.000 | 17.23 | 6.92 | 0.00 | 4.79 |
5240 | 5914 | 2.202623 | GTGTGCTAGCTCGACGGG | 60.203 | 66.667 | 17.23 | 0.00 | 0.00 | 5.28 |
5241 | 5915 | 3.449227 | TGTGCTAGCTCGACGGGG | 61.449 | 66.667 | 17.23 | 0.00 | 0.00 | 5.73 |
5242 | 5916 | 4.874977 | GTGCTAGCTCGACGGGGC | 62.875 | 72.222 | 17.23 | 0.92 | 0.00 | 5.80 |
5244 | 5918 | 4.874977 | GCTAGCTCGACGGGGCAC | 62.875 | 72.222 | 7.70 | 0.00 | 0.00 | 5.01 |
5245 | 5919 | 3.141488 | CTAGCTCGACGGGGCACT | 61.141 | 66.667 | 14.04 | 0.00 | 0.00 | 4.40 |
5246 | 5920 | 3.127352 | CTAGCTCGACGGGGCACTC | 62.127 | 68.421 | 14.04 | 0.00 | 0.00 | 3.51 |
5247 | 5921 | 3.640257 | TAGCTCGACGGGGCACTCT | 62.640 | 63.158 | 14.04 | 0.00 | 0.00 | 3.24 |
5248 | 5922 | 4.070552 | GCTCGACGGGGCACTCTT | 62.071 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
5249 | 5923 | 2.657237 | CTCGACGGGGCACTCTTT | 59.343 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
5250 | 5924 | 1.738099 | CTCGACGGGGCACTCTTTG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 2.77 |
5251 | 5925 | 2.030562 | CGACGGGGCACTCTTTGT | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 2.83 |
5252 | 5926 | 1.180456 | TCGACGGGGCACTCTTTGTA | 61.180 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5253 | 5927 | 0.320073 | CGACGGGGCACTCTTTGTAA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5254 | 5928 | 1.874739 | CGACGGGGCACTCTTTGTAAA | 60.875 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
5255 | 5929 | 1.804748 | GACGGGGCACTCTTTGTAAAG | 59.195 | 52.381 | 0.00 | 0.00 | 37.36 | 1.85 |
5256 | 5930 | 1.165270 | CGGGGCACTCTTTGTAAAGG | 58.835 | 55.000 | 4.67 | 0.00 | 36.67 | 3.11 |
5257 | 5931 | 1.544759 | CGGGGCACTCTTTGTAAAGGT | 60.545 | 52.381 | 4.67 | 0.00 | 36.67 | 3.50 |
5258 | 5932 | 1.886542 | GGGGCACTCTTTGTAAAGGTG | 59.113 | 52.381 | 15.51 | 15.51 | 38.79 | 4.00 |
5259 | 5933 | 2.583143 | GGGCACTCTTTGTAAAGGTGT | 58.417 | 47.619 | 18.43 | 10.59 | 38.41 | 4.16 |
5260 | 5934 | 2.293399 | GGGCACTCTTTGTAAAGGTGTG | 59.707 | 50.000 | 18.43 | 18.26 | 40.39 | 3.82 |
5261 | 5935 | 2.949644 | GGCACTCTTTGTAAAGGTGTGT | 59.050 | 45.455 | 20.71 | 8.85 | 40.01 | 3.72 |
5262 | 5936 | 3.243068 | GGCACTCTTTGTAAAGGTGTGTG | 60.243 | 47.826 | 20.71 | 16.42 | 40.01 | 3.82 |
5263 | 5937 | 3.377172 | GCACTCTTTGTAAAGGTGTGTGT | 59.623 | 43.478 | 20.71 | 6.10 | 40.01 | 3.72 |
5264 | 5938 | 4.730613 | GCACTCTTTGTAAAGGTGTGTGTG | 60.731 | 45.833 | 20.71 | 13.88 | 40.01 | 3.82 |
5265 | 5939 | 4.394920 | CACTCTTTGTAAAGGTGTGTGTGT | 59.605 | 41.667 | 16.00 | 0.00 | 36.78 | 3.72 |
5266 | 5940 | 4.634443 | ACTCTTTGTAAAGGTGTGTGTGTC | 59.366 | 41.667 | 4.67 | 0.00 | 36.67 | 3.67 |
5267 | 5941 | 4.580868 | TCTTTGTAAAGGTGTGTGTGTCA | 58.419 | 39.130 | 4.67 | 0.00 | 36.67 | 3.58 |
5268 | 5942 | 5.189928 | TCTTTGTAAAGGTGTGTGTGTCAT | 58.810 | 37.500 | 4.67 | 0.00 | 36.67 | 3.06 |
5269 | 5943 | 6.350103 | TCTTTGTAAAGGTGTGTGTGTCATA | 58.650 | 36.000 | 4.67 | 0.00 | 36.67 | 2.15 |
5270 | 5944 | 6.995686 | TCTTTGTAAAGGTGTGTGTGTCATAT | 59.004 | 34.615 | 4.67 | 0.00 | 36.67 | 1.78 |
5271 | 5945 | 6.795098 | TTGTAAAGGTGTGTGTGTCATATC | 57.205 | 37.500 | 0.00 | 0.00 | 0.00 | 1.63 |
5272 | 5946 | 6.109156 | TGTAAAGGTGTGTGTGTCATATCT | 57.891 | 37.500 | 0.00 | 0.00 | 29.85 | 1.98 |
5273 | 5947 | 5.931724 | TGTAAAGGTGTGTGTGTCATATCTG | 59.068 | 40.000 | 0.00 | 0.00 | 29.19 | 2.90 |
5274 | 5948 | 4.623932 | AAGGTGTGTGTGTCATATCTGT | 57.376 | 40.909 | 0.00 | 0.00 | 29.19 | 3.41 |
5275 | 5949 | 3.930336 | AGGTGTGTGTGTCATATCTGTG | 58.070 | 45.455 | 0.00 | 0.00 | 27.57 | 3.66 |
5276 | 5950 | 3.324846 | AGGTGTGTGTGTCATATCTGTGT | 59.675 | 43.478 | 0.00 | 0.00 | 27.57 | 3.72 |
5277 | 5951 | 3.433274 | GGTGTGTGTGTCATATCTGTGTG | 59.567 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
5278 | 5952 | 4.058124 | GTGTGTGTGTCATATCTGTGTGT | 58.942 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
5279 | 5953 | 4.057432 | TGTGTGTGTCATATCTGTGTGTG | 58.943 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
5280 | 5954 | 3.066380 | TGTGTGTCATATCTGTGTGTGC | 58.934 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
5281 | 5955 | 2.416547 | GTGTGTCATATCTGTGTGTGCC | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
5282 | 5956 | 1.660607 | GTGTCATATCTGTGTGTGCCG | 59.339 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
5283 | 5957 | 0.652592 | GTCATATCTGTGTGTGCCGC | 59.347 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
5284 | 5958 | 0.536724 | TCATATCTGTGTGTGCCGCT | 59.463 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
5285 | 5959 | 0.933097 | CATATCTGTGTGTGCCGCTC | 59.067 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
5286 | 5960 | 0.536724 | ATATCTGTGTGTGCCGCTCA | 59.463 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5287 | 5961 | 0.320050 | TATCTGTGTGTGCCGCTCAA | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5288 | 5962 | 1.230635 | ATCTGTGTGTGCCGCTCAAC | 61.231 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5289 | 5963 | 3.227372 | CTGTGTGTGCCGCTCAACG | 62.227 | 63.158 | 0.00 | 0.00 | 43.15 | 4.10 |
5300 | 5974 | 1.673760 | CGCTCAACGGTTTTGTGATG | 58.326 | 50.000 | 0.00 | 0.00 | 38.44 | 3.07 |
5301 | 5975 | 1.662876 | CGCTCAACGGTTTTGTGATGG | 60.663 | 52.381 | 0.00 | 0.00 | 38.44 | 3.51 |
5302 | 5976 | 1.336755 | GCTCAACGGTTTTGTGATGGT | 59.663 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
5303 | 5977 | 2.223711 | GCTCAACGGTTTTGTGATGGTT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
5304 | 5978 | 3.736740 | GCTCAACGGTTTTGTGATGGTTT | 60.737 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
5305 | 5979 | 4.429108 | CTCAACGGTTTTGTGATGGTTTT | 58.571 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
5306 | 5980 | 4.425520 | TCAACGGTTTTGTGATGGTTTTC | 58.574 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
5307 | 5981 | 3.073144 | ACGGTTTTGTGATGGTTTTCG | 57.927 | 42.857 | 0.00 | 0.00 | 0.00 | 3.46 |
5308 | 5982 | 1.784283 | CGGTTTTGTGATGGTTTTCGC | 59.216 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
5309 | 5983 | 2.131972 | GGTTTTGTGATGGTTTTCGCC | 58.868 | 47.619 | 0.00 | 0.00 | 0.00 | 5.54 |
5310 | 5984 | 2.131972 | GTTTTGTGATGGTTTTCGCCC | 58.868 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
5311 | 5985 | 0.312416 | TTTGTGATGGTTTTCGCCCG | 59.688 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
5312 | 5986 | 1.519751 | TTGTGATGGTTTTCGCCCGG | 61.520 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
5313 | 5987 | 1.969589 | GTGATGGTTTTCGCCCGGT | 60.970 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
5314 | 5988 | 1.228306 | TGATGGTTTTCGCCCGGTT | 60.228 | 52.632 | 0.00 | 0.00 | 0.00 | 4.44 |
5315 | 5989 | 0.824182 | TGATGGTTTTCGCCCGGTTT | 60.824 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
5316 | 5990 | 0.315886 | GATGGTTTTCGCCCGGTTTT | 59.684 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5317 | 5991 | 0.315886 | ATGGTTTTCGCCCGGTTTTC | 59.684 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5318 | 5992 | 1.007038 | GGTTTTCGCCCGGTTTTCC | 60.007 | 57.895 | 0.00 | 0.00 | 0.00 | 3.13 |
5319 | 5993 | 1.734748 | GTTTTCGCCCGGTTTTCCA | 59.265 | 52.632 | 0.00 | 0.00 | 40.70 | 3.53 |
5320 | 5994 | 0.315886 | GTTTTCGCCCGGTTTTCCAT | 59.684 | 50.000 | 0.00 | 0.00 | 40.70 | 3.41 |
5321 | 5995 | 1.041437 | TTTTCGCCCGGTTTTCCATT | 58.959 | 45.000 | 0.00 | 0.00 | 40.70 | 3.16 |
5322 | 5996 | 1.906990 | TTTCGCCCGGTTTTCCATTA | 58.093 | 45.000 | 0.00 | 0.00 | 40.70 | 1.90 |
5323 | 5997 | 1.906990 | TTCGCCCGGTTTTCCATTAA | 58.093 | 45.000 | 0.00 | 0.00 | 40.70 | 1.40 |
5324 | 5998 | 2.131776 | TCGCCCGGTTTTCCATTAAT | 57.868 | 45.000 | 0.00 | 0.00 | 40.70 | 1.40 |
5325 | 5999 | 2.018515 | TCGCCCGGTTTTCCATTAATC | 58.981 | 47.619 | 0.00 | 0.00 | 40.70 | 1.75 |
5326 | 6000 | 1.746220 | CGCCCGGTTTTCCATTAATCA | 59.254 | 47.619 | 0.00 | 0.00 | 40.70 | 2.57 |
5327 | 6001 | 2.164624 | CGCCCGGTTTTCCATTAATCAA | 59.835 | 45.455 | 0.00 | 0.00 | 40.70 | 2.57 |
5328 | 6002 | 3.517602 | GCCCGGTTTTCCATTAATCAAC | 58.482 | 45.455 | 0.00 | 0.00 | 40.70 | 3.18 |
5329 | 6003 | 3.677700 | GCCCGGTTTTCCATTAATCAACC | 60.678 | 47.826 | 0.00 | 5.72 | 40.70 | 3.77 |
5333 | 6007 | 4.740268 | GGTTTTCCATTAATCAACCGGAC | 58.260 | 43.478 | 9.46 | 0.00 | 40.31 | 4.79 |
5334 | 6008 | 4.218852 | GGTTTTCCATTAATCAACCGGACA | 59.781 | 41.667 | 9.46 | 0.00 | 40.31 | 4.02 |
5335 | 6009 | 5.279056 | GGTTTTCCATTAATCAACCGGACAA | 60.279 | 40.000 | 9.46 | 0.00 | 40.31 | 3.18 |
5336 | 6010 | 6.394809 | GTTTTCCATTAATCAACCGGACAAT | 58.605 | 36.000 | 9.46 | 0.00 | 0.00 | 2.71 |
5337 | 6011 | 6.597832 | TTTCCATTAATCAACCGGACAATT | 57.402 | 33.333 | 9.46 | 6.82 | 0.00 | 2.32 |
5338 | 6012 | 5.828299 | TCCATTAATCAACCGGACAATTC | 57.172 | 39.130 | 9.46 | 0.00 | 0.00 | 2.17 |
5339 | 6013 | 5.505780 | TCCATTAATCAACCGGACAATTCT | 58.494 | 37.500 | 9.46 | 0.00 | 0.00 | 2.40 |
5340 | 6014 | 5.588648 | TCCATTAATCAACCGGACAATTCTC | 59.411 | 40.000 | 9.46 | 0.00 | 0.00 | 2.87 |
5341 | 6015 | 5.590259 | CCATTAATCAACCGGACAATTCTCT | 59.410 | 40.000 | 9.46 | 0.00 | 0.00 | 3.10 |
5342 | 6016 | 6.095440 | CCATTAATCAACCGGACAATTCTCTT | 59.905 | 38.462 | 9.46 | 0.00 | 0.00 | 2.85 |
5343 | 6017 | 6.737254 | TTAATCAACCGGACAATTCTCTTC | 57.263 | 37.500 | 9.46 | 0.00 | 0.00 | 2.87 |
5344 | 6018 | 4.559862 | ATCAACCGGACAATTCTCTTCT | 57.440 | 40.909 | 9.46 | 0.00 | 0.00 | 2.85 |
5345 | 6019 | 3.664107 | TCAACCGGACAATTCTCTTCTG | 58.336 | 45.455 | 9.46 | 0.00 | 0.00 | 3.02 |
5346 | 6020 | 2.100605 | ACCGGACAATTCTCTTCTGC | 57.899 | 50.000 | 9.46 | 0.00 | 0.00 | 4.26 |
5347 | 6021 | 1.625818 | ACCGGACAATTCTCTTCTGCT | 59.374 | 47.619 | 9.46 | 0.00 | 0.00 | 4.24 |
5348 | 6022 | 2.039084 | ACCGGACAATTCTCTTCTGCTT | 59.961 | 45.455 | 9.46 | 0.00 | 0.00 | 3.91 |
5349 | 6023 | 2.675348 | CCGGACAATTCTCTTCTGCTTC | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5350 | 6024 | 3.329386 | CGGACAATTCTCTTCTGCTTCA | 58.671 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
5351 | 6025 | 3.937706 | CGGACAATTCTCTTCTGCTTCAT | 59.062 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5352 | 6026 | 4.394300 | CGGACAATTCTCTTCTGCTTCATT | 59.606 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5353 | 6027 | 5.582269 | CGGACAATTCTCTTCTGCTTCATTA | 59.418 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
5354 | 6028 | 6.092670 | CGGACAATTCTCTTCTGCTTCATTAA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5355 | 6029 | 7.201679 | CGGACAATTCTCTTCTGCTTCATTAAT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
5356 | 6030 | 7.914346 | GGACAATTCTCTTCTGCTTCATTAATG | 59.086 | 37.037 | 9.29 | 9.29 | 0.00 | 1.90 |
5357 | 6031 | 7.769220 | ACAATTCTCTTCTGCTTCATTAATGG | 58.231 | 34.615 | 15.36 | 1.65 | 0.00 | 3.16 |
5358 | 6032 | 7.613022 | ACAATTCTCTTCTGCTTCATTAATGGA | 59.387 | 33.333 | 15.36 | 5.89 | 0.00 | 3.41 |
5359 | 6033 | 8.630917 | CAATTCTCTTCTGCTTCATTAATGGAT | 58.369 | 33.333 | 15.36 | 0.00 | 0.00 | 3.41 |
5360 | 6034 | 7.563888 | TTCTCTTCTGCTTCATTAATGGATG | 57.436 | 36.000 | 15.36 | 7.15 | 0.00 | 3.51 |
5361 | 6035 | 6.892485 | TCTCTTCTGCTTCATTAATGGATGA | 58.108 | 36.000 | 15.36 | 10.20 | 34.37 | 2.92 |
5362 | 6036 | 6.990939 | TCTCTTCTGCTTCATTAATGGATGAG | 59.009 | 38.462 | 15.36 | 17.32 | 37.35 | 2.90 |
5363 | 6037 | 6.060136 | TCTTCTGCTTCATTAATGGATGAGG | 58.940 | 40.000 | 15.36 | 6.49 | 37.35 | 3.86 |
5390 | 6064 | 6.410243 | AAAAATTGCCTTCGTTTCGAAAAA | 57.590 | 29.167 | 13.10 | 3.41 | 45.23 | 1.94 |
5431 | 6105 | 2.847959 | TCGACCGCATATAAACACGA | 57.152 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5441 | 6115 | 4.790123 | GCATATAAACACGACGAGAGCTCT | 60.790 | 45.833 | 18.28 | 18.28 | 0.00 | 4.09 |
5477 | 6151 | 2.653726 | GGTGCATGACCAATATGACCA | 58.346 | 47.619 | 0.00 | 0.00 | 45.34 | 4.02 |
5487 | 6161 | 5.647658 | TGACCAATATGACCAGACATTGTTC | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5489 | 6163 | 4.949238 | CCAATATGACCAGACATTGTTCCA | 59.051 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
5557 | 6231 | 0.179000 | CCAGGGTCAGGTAGATGTGC | 59.821 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.426023 | CCATGGCTACGGGGCTAC | 59.574 | 66.667 | 0.00 | 0.00 | 41.48 | 3.58 |
1 | 2 | 3.556306 | GCCATGGCTACGGGGCTA | 61.556 | 66.667 | 29.98 | 0.00 | 43.09 | 3.93 |
5 | 6 | 3.515316 | CTACGGCCATGGCTACGGG | 62.515 | 68.421 | 34.70 | 21.88 | 41.60 | 5.28 |
6 | 7 | 2.029073 | CTACGGCCATGGCTACGG | 59.971 | 66.667 | 34.70 | 22.78 | 41.60 | 4.02 |
7 | 8 | 2.644555 | AAGCTACGGCCATGGCTACG | 62.645 | 60.000 | 34.70 | 30.61 | 34.96 | 3.51 |
8 | 9 | 1.146263 | AAGCTACGGCCATGGCTAC | 59.854 | 57.895 | 34.70 | 19.13 | 34.96 | 3.58 |
9 | 10 | 1.146041 | CAAGCTACGGCCATGGCTA | 59.854 | 57.895 | 34.70 | 19.87 | 34.96 | 3.93 |
10 | 11 | 2.124570 | CAAGCTACGGCCATGGCT | 60.125 | 61.111 | 34.70 | 19.81 | 38.17 | 4.75 |
11 | 12 | 3.211963 | CCAAGCTACGGCCATGGC | 61.212 | 66.667 | 29.47 | 29.47 | 38.50 | 4.40 |
12 | 13 | 1.524621 | CTCCAAGCTACGGCCATGG | 60.525 | 63.158 | 7.63 | 7.63 | 43.25 | 3.66 |
13 | 14 | 0.531532 | CTCTCCAAGCTACGGCCATG | 60.532 | 60.000 | 2.24 | 0.00 | 39.73 | 3.66 |
14 | 15 | 1.690219 | CCTCTCCAAGCTACGGCCAT | 61.690 | 60.000 | 2.24 | 0.00 | 39.73 | 4.40 |
15 | 16 | 2.359169 | CCTCTCCAAGCTACGGCCA | 61.359 | 63.158 | 2.24 | 0.00 | 39.73 | 5.36 |
16 | 17 | 1.614241 | TTCCTCTCCAAGCTACGGCC | 61.614 | 60.000 | 0.00 | 0.00 | 39.73 | 6.13 |
17 | 18 | 0.249398 | TTTCCTCTCCAAGCTACGGC | 59.751 | 55.000 | 0.00 | 0.00 | 39.06 | 5.68 |
18 | 19 | 2.168521 | TGATTTCCTCTCCAAGCTACGG | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
19 | 20 | 3.190874 | GTGATTTCCTCTCCAAGCTACG | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
20 | 21 | 3.536570 | GGTGATTTCCTCTCCAAGCTAC | 58.463 | 50.000 | 0.00 | 0.00 | 37.45 | 3.58 |
21 | 22 | 2.168521 | CGGTGATTTCCTCTCCAAGCTA | 59.831 | 50.000 | 0.00 | 0.00 | 37.37 | 3.32 |
30 | 31 | 2.128035 | CGTCATAGCGGTGATTTCCTC | 58.872 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
184 | 186 | 2.042843 | TCCTTCTCTCCTCGCCCC | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
186 | 188 | 2.811799 | GCTCCTTCTCTCCTCGCC | 59.188 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
188 | 190 | 2.485795 | CCCGCTCCTTCTCTCCTCG | 61.486 | 68.421 | 0.00 | 0.00 | 0.00 | 4.63 |
190 | 192 | 1.380650 | GTCCCGCTCCTTCTCTCCT | 60.381 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
192 | 194 | 0.108567 | GTTGTCCCGCTCCTTCTCTC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
193 | 195 | 1.545706 | GGTTGTCCCGCTCCTTCTCT | 61.546 | 60.000 | 0.00 | 0.00 | 0.00 | 3.10 |
194 | 196 | 1.079057 | GGTTGTCCCGCTCCTTCTC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 2.87 |
195 | 197 | 1.831652 | CTGGTTGTCCCGCTCCTTCT | 61.832 | 60.000 | 0.00 | 0.00 | 35.15 | 2.85 |
197 | 199 | 1.201429 | ATCTGGTTGTCCCGCTCCTT | 61.201 | 55.000 | 0.00 | 0.00 | 35.15 | 3.36 |
198 | 200 | 1.613630 | ATCTGGTTGTCCCGCTCCT | 60.614 | 57.895 | 0.00 | 0.00 | 35.15 | 3.69 |
201 | 203 | 1.918293 | TGGATCTGGTTGTCCCGCT | 60.918 | 57.895 | 0.00 | 0.00 | 35.15 | 5.52 |
203 | 205 | 0.673644 | GTGTGGATCTGGTTGTCCCG | 60.674 | 60.000 | 0.00 | 0.00 | 35.15 | 5.14 |
206 | 208 | 1.813513 | CTGGTGTGGATCTGGTTGTC | 58.186 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
207 | 209 | 0.250901 | GCTGGTGTGGATCTGGTTGT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
208 | 210 | 1.300971 | CGCTGGTGTGGATCTGGTTG | 61.301 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
209 | 211 | 1.003355 | CGCTGGTGTGGATCTGGTT | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
210 | 212 | 2.665000 | CGCTGGTGTGGATCTGGT | 59.335 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
211 | 213 | 2.821366 | GCGCTGGTGTGGATCTGG | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
212 | 214 | 3.190849 | CGCGCTGGTGTGGATCTG | 61.191 | 66.667 | 5.56 | 0.00 | 0.00 | 2.90 |
213 | 215 | 3.362399 | CTCGCGCTGGTGTGGATCT | 62.362 | 63.158 | 5.56 | 0.00 | 0.00 | 2.75 |
214 | 216 | 2.887568 | CTCGCGCTGGTGTGGATC | 60.888 | 66.667 | 5.56 | 0.00 | 0.00 | 3.36 |
215 | 217 | 4.457496 | CCTCGCGCTGGTGTGGAT | 62.457 | 66.667 | 5.56 | 0.00 | 39.16 | 3.41 |
280 | 282 | 1.002868 | AGTGCAGTGATGTCCTGGC | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
281 | 283 | 0.322648 | TCAGTGCAGTGATGTCCTGG | 59.677 | 55.000 | 20.39 | 0.00 | 0.00 | 4.45 |
282 | 284 | 1.675116 | CCTCAGTGCAGTGATGTCCTG | 60.675 | 57.143 | 24.08 | 11.42 | 0.00 | 3.86 |
291 | 293 | 0.538287 | GCCTTTTCCCTCAGTGCAGT | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
292 | 294 | 1.246737 | GGCCTTTTCCCTCAGTGCAG | 61.247 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
293 | 295 | 1.228552 | GGCCTTTTCCCTCAGTGCA | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
294 | 296 | 0.962855 | GAGGCCTTTTCCCTCAGTGC | 60.963 | 60.000 | 6.77 | 0.00 | 46.51 | 4.40 |
350 | 352 | 2.269241 | GCCGCTAAAGGTCCAGCT | 59.731 | 61.111 | 0.00 | 0.00 | 35.57 | 4.24 |
376 | 514 | 0.039911 | AGCTGTCGTACCTTCTCCCT | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
417 | 555 | 2.575993 | CTCCCTGTGTCGCCTCTG | 59.424 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
427 | 565 | 0.712979 | TGAGATCACCTCCTCCCTGT | 59.287 | 55.000 | 0.00 | 0.00 | 41.25 | 4.00 |
433 | 590 | 3.627237 | GGAAGAGACTGAGATCACCTCCT | 60.627 | 52.174 | 0.00 | 0.00 | 41.25 | 3.69 |
448 | 605 | 4.695455 | CGCATAACTCAAAAAGGGAAGAGA | 59.305 | 41.667 | 0.00 | 0.00 | 32.59 | 3.10 |
456 | 613 | 9.820229 | TTTGAAGTATACGCATAACTCAAAAAG | 57.180 | 29.630 | 9.43 | 0.00 | 32.17 | 2.27 |
559 | 718 | 4.677584 | TCCGTGAAACTTTCCAAACATTG | 58.322 | 39.130 | 0.00 | 0.00 | 31.75 | 2.82 |
617 | 777 | 0.247460 | CATGGTCTCTCGGTGCAAGA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
637 | 797 | 4.022935 | AGTTTCATTCGGTGTGTAGTACGA | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 3.43 |
643 | 803 | 2.147958 | GGCAGTTTCATTCGGTGTGTA | 58.852 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
663 | 823 | 0.972983 | AGTGGACTCCGGATGTCAGG | 60.973 | 60.000 | 25.48 | 9.80 | 36.26 | 3.86 |
957 | 1117 | 0.617249 | AAGTGGGCTCCTCTCCTCTG | 60.617 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1058 | 1218 | 3.267860 | CAGAGGCCGCTCAATCGC | 61.268 | 66.667 | 5.80 | 0.00 | 0.00 | 4.58 |
1059 | 1219 | 1.021390 | AAACAGAGGCCGCTCAATCG | 61.021 | 55.000 | 5.80 | 0.00 | 0.00 | 3.34 |
1071 | 1231 | 1.170290 | AAACCCGCCGGAAAACAGAG | 61.170 | 55.000 | 5.05 | 0.00 | 0.00 | 3.35 |
1076 | 1236 | 1.041437 | AATCAAAACCCGCCGGAAAA | 58.959 | 45.000 | 5.05 | 0.00 | 0.00 | 2.29 |
1079 | 1239 | 1.579084 | CGAAATCAAAACCCGCCGGA | 61.579 | 55.000 | 5.05 | 0.00 | 0.00 | 5.14 |
1080 | 1240 | 1.154112 | CGAAATCAAAACCCGCCGG | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
1084 | 1244 | 1.334288 | GCGCACGAAATCAAAACCCG | 61.334 | 55.000 | 0.30 | 0.00 | 0.00 | 5.28 |
1089 | 1249 | 0.040514 | CACCAGCGCACGAAATCAAA | 60.041 | 50.000 | 11.47 | 0.00 | 0.00 | 2.69 |
1133 | 1469 | 1.946475 | CTCCGTCCTCGTTCCTTCCC | 61.946 | 65.000 | 0.00 | 0.00 | 35.01 | 3.97 |
1136 | 1472 | 1.982938 | CCCTCCGTCCTCGTTCCTT | 60.983 | 63.158 | 0.00 | 0.00 | 35.01 | 3.36 |
1248 | 1585 | 6.336392 | GTCAACGAACAAAATCAATGAAACG | 58.664 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
1346 | 1687 | 5.582665 | CAGTTCACCTAAGAATTGCTCTACC | 59.417 | 44.000 | 0.00 | 0.00 | 32.46 | 3.18 |
1358 | 1699 | 8.091449 | AGAGACAAATAAGACAGTTCACCTAAG | 58.909 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
1401 | 1742 | 4.320057 | CCTCAAAGTGATGAACAGAACAGC | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
1449 | 1790 | 0.581529 | CGTTTTCTCAAGAGCACGCA | 59.418 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
1534 | 1875 | 1.374560 | TCACAAACACAGTTCCACCG | 58.625 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1572 | 1913 | 8.998558 | AGCAAATAAGTTTCACTAACGTTAAC | 57.001 | 30.769 | 9.68 | 6.14 | 41.78 | 2.01 |
1703 | 2044 | 7.605449 | TGAAAATCCAGATCATTCTTGGAAAC | 58.395 | 34.615 | 4.86 | 0.00 | 34.76 | 2.78 |
1707 | 2048 | 6.376299 | TCACTGAAAATCCAGATCATTCTTGG | 59.624 | 38.462 | 0.00 | 0.00 | 37.59 | 3.61 |
1908 | 2249 | 3.975035 | GTGCCTTCTTTTGCTCTTTAACG | 59.025 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1909 | 2250 | 5.188327 | AGTGCCTTCTTTTGCTCTTTAAC | 57.812 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
2026 | 2367 | 5.913137 | ATGTGACAACCAAAGTCTTCAAA | 57.087 | 34.783 | 0.00 | 0.00 | 36.94 | 2.69 |
2030 | 2371 | 7.936847 | TGTAGATTATGTGACAACCAAAGTCTT | 59.063 | 33.333 | 0.00 | 0.00 | 36.94 | 3.01 |
3429 | 3777 | 8.748380 | AGTTTTGCATTAATAAGCAGAGAAAC | 57.252 | 30.769 | 13.49 | 13.49 | 42.39 | 2.78 |
3670 | 4018 | 4.324267 | GCTAACAAAGAGCAGGGAAGTTA | 58.676 | 43.478 | 0.00 | 0.00 | 39.84 | 2.24 |
3747 | 4095 | 5.189736 | TGACATTGCTAGGACCTATTTCAGT | 59.810 | 40.000 | 0.46 | 0.00 | 0.00 | 3.41 |
4349 | 4725 | 2.285083 | TGTGGCTAACAATACGGCATC | 58.715 | 47.619 | 0.00 | 0.00 | 35.24 | 3.91 |
4353 | 4729 | 4.119442 | AGTACTGTGGCTAACAATACGG | 57.881 | 45.455 | 0.00 | 0.00 | 44.39 | 4.02 |
4355 | 4731 | 8.712285 | TTATGAAGTACTGTGGCTAACAATAC | 57.288 | 34.615 | 0.00 | 4.27 | 40.92 | 1.89 |
4371 | 4747 | 9.010029 | GGAGAAAATCAAGTGGTTTATGAAGTA | 57.990 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4648 | 5119 | 5.585047 | GGTTGCACTTATTCCGATCTTACTT | 59.415 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4683 | 5154 | 9.575783 | TTTGTTCTTCCACTTTACAAATTACAC | 57.424 | 29.630 | 0.00 | 0.00 | 34.75 | 2.90 |
4690 | 5324 | 5.065474 | CCGACTTTGTTCTTCCACTTTACAA | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4698 | 5332 | 1.416401 | AGCTCCGACTTTGTTCTTCCA | 59.584 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
4943 | 5581 | 4.246712 | ACTAGTTAGGATTCGAGGGTGA | 57.753 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4962 | 5600 | 1.550327 | TGTGCTGCTCTACTGCTACT | 58.450 | 50.000 | 0.00 | 0.00 | 43.25 | 2.57 |
4982 | 5620 | 0.929734 | TCTAGCCCTACCTCCCCACT | 60.930 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5019 | 5657 | 1.593196 | GCAGTGGCGCCATATTAGAA | 58.407 | 50.000 | 35.23 | 2.76 | 0.00 | 2.10 |
5042 | 5680 | 2.172851 | ACCGGTCTTTGTTTATCGCA | 57.827 | 45.000 | 0.00 | 0.00 | 0.00 | 5.10 |
5071 | 5709 | 7.986889 | TGTTGCTATTCTATGTTGCAGAATCTA | 59.013 | 33.333 | 1.74 | 0.00 | 40.91 | 1.98 |
5101 | 5739 | 0.467659 | TTCCTCGCTAGGGGCTAGTC | 60.468 | 60.000 | 4.14 | 0.00 | 43.84 | 2.59 |
5122 | 5760 | 7.496346 | TGACCTTTATGTAAGAACAGGATCT | 57.504 | 36.000 | 0.00 | 0.00 | 39.49 | 2.75 |
5128 | 5802 | 7.227873 | TGTGGATTGACCTTTATGTAAGAACA | 58.772 | 34.615 | 0.00 | 0.00 | 38.71 | 3.18 |
5131 | 5805 | 7.175990 | GGTTTGTGGATTGACCTTTATGTAAGA | 59.824 | 37.037 | 0.00 | 0.00 | 39.86 | 2.10 |
5143 | 5817 | 7.186804 | CGACTTATTATGGTTTGTGGATTGAC | 58.813 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
5158 | 5832 | 5.050091 | CGAGCAAGCAAATCCGACTTATTAT | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
5165 | 5839 | 1.019278 | TCCGAGCAAGCAAATCCGAC | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5166 | 5840 | 1.019278 | GTCCGAGCAAGCAAATCCGA | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
5167 | 5841 | 1.021390 | AGTCCGAGCAAGCAAATCCG | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
5168 | 5842 | 0.729690 | GAGTCCGAGCAAGCAAATCC | 59.270 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5169 | 5843 | 0.371645 | CGAGTCCGAGCAAGCAAATC | 59.628 | 55.000 | 0.00 | 0.00 | 38.22 | 2.17 |
5170 | 5844 | 1.639298 | GCGAGTCCGAGCAAGCAAAT | 61.639 | 55.000 | 0.00 | 0.00 | 38.22 | 2.32 |
5171 | 5845 | 2.317609 | GCGAGTCCGAGCAAGCAAA | 61.318 | 57.895 | 0.00 | 0.00 | 38.22 | 3.68 |
5172 | 5846 | 2.738521 | GCGAGTCCGAGCAAGCAA | 60.739 | 61.111 | 0.00 | 0.00 | 38.22 | 3.91 |
5173 | 5847 | 4.742201 | GGCGAGTCCGAGCAAGCA | 62.742 | 66.667 | 0.00 | 0.00 | 38.22 | 3.91 |
5174 | 5848 | 4.443266 | AGGCGAGTCCGAGCAAGC | 62.443 | 66.667 | 0.00 | 0.00 | 40.77 | 4.01 |
5175 | 5849 | 2.507992 | CAGGCGAGTCCGAGCAAG | 60.508 | 66.667 | 0.00 | 0.00 | 40.77 | 4.01 |
5176 | 5850 | 2.377628 | AAACAGGCGAGTCCGAGCAA | 62.378 | 55.000 | 0.00 | 0.00 | 40.77 | 3.91 |
5177 | 5851 | 2.867855 | AAACAGGCGAGTCCGAGCA | 61.868 | 57.895 | 0.00 | 0.00 | 40.77 | 4.26 |
5178 | 5852 | 2.048127 | AAACAGGCGAGTCCGAGC | 60.048 | 61.111 | 0.00 | 0.00 | 40.77 | 5.03 |
5179 | 5853 | 1.738099 | CCAAACAGGCGAGTCCGAG | 60.738 | 63.158 | 0.00 | 0.00 | 40.77 | 4.63 |
5180 | 5854 | 2.342279 | CCAAACAGGCGAGTCCGA | 59.658 | 61.111 | 0.00 | 0.00 | 40.77 | 4.55 |
5181 | 5855 | 2.742372 | CCCAAACAGGCGAGTCCG | 60.742 | 66.667 | 0.00 | 0.00 | 40.77 | 4.79 |
5182 | 5856 | 2.359975 | CCCCAAACAGGCGAGTCC | 60.360 | 66.667 | 0.00 | 0.00 | 35.39 | 3.85 |
5183 | 5857 | 1.376037 | CTCCCCAAACAGGCGAGTC | 60.376 | 63.158 | 0.00 | 0.00 | 35.39 | 3.36 |
5184 | 5858 | 1.415672 | TTCTCCCCAAACAGGCGAGT | 61.416 | 55.000 | 0.00 | 0.00 | 35.39 | 4.18 |
5185 | 5859 | 0.250727 | TTTCTCCCCAAACAGGCGAG | 60.251 | 55.000 | 0.00 | 0.00 | 35.39 | 5.03 |
5186 | 5860 | 0.250727 | CTTTCTCCCCAAACAGGCGA | 60.251 | 55.000 | 0.00 | 0.00 | 35.39 | 5.54 |
5187 | 5861 | 0.537371 | ACTTTCTCCCCAAACAGGCG | 60.537 | 55.000 | 0.00 | 0.00 | 35.39 | 5.52 |
5188 | 5862 | 0.961753 | CACTTTCTCCCCAAACAGGC | 59.038 | 55.000 | 0.00 | 0.00 | 35.39 | 4.85 |
5189 | 5863 | 2.656947 | TCACTTTCTCCCCAAACAGG | 57.343 | 50.000 | 0.00 | 0.00 | 37.03 | 4.00 |
5190 | 5864 | 3.503748 | GTCATCACTTTCTCCCCAAACAG | 59.496 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
5191 | 5865 | 3.486383 | GTCATCACTTTCTCCCCAAACA | 58.514 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
5192 | 5866 | 2.484264 | CGTCATCACTTTCTCCCCAAAC | 59.516 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
5193 | 5867 | 2.370519 | TCGTCATCACTTTCTCCCCAAA | 59.629 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
5194 | 5868 | 1.974957 | TCGTCATCACTTTCTCCCCAA | 59.025 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
5195 | 5869 | 1.639722 | TCGTCATCACTTTCTCCCCA | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
5196 | 5870 | 2.168521 | TCATCGTCATCACTTTCTCCCC | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
5197 | 5871 | 3.190874 | GTCATCGTCATCACTTTCTCCC | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5198 | 5872 | 2.854777 | CGTCATCGTCATCACTTTCTCC | 59.145 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
5199 | 5873 | 2.280183 | GCGTCATCGTCATCACTTTCTC | 59.720 | 50.000 | 0.00 | 0.00 | 39.49 | 2.87 |
5200 | 5874 | 2.094494 | AGCGTCATCGTCATCACTTTCT | 60.094 | 45.455 | 0.00 | 0.00 | 39.49 | 2.52 |
5201 | 5875 | 2.263077 | AGCGTCATCGTCATCACTTTC | 58.737 | 47.619 | 0.00 | 0.00 | 39.49 | 2.62 |
5202 | 5876 | 2.370281 | AGCGTCATCGTCATCACTTT | 57.630 | 45.000 | 0.00 | 0.00 | 39.49 | 2.66 |
5203 | 5877 | 1.995484 | CAAGCGTCATCGTCATCACTT | 59.005 | 47.619 | 0.00 | 0.00 | 39.49 | 3.16 |
5204 | 5878 | 1.067565 | ACAAGCGTCATCGTCATCACT | 60.068 | 47.619 | 0.00 | 0.00 | 39.49 | 3.41 |
5205 | 5879 | 1.059692 | CACAAGCGTCATCGTCATCAC | 59.940 | 52.381 | 0.00 | 0.00 | 39.49 | 3.06 |
5206 | 5880 | 1.336795 | ACACAAGCGTCATCGTCATCA | 60.337 | 47.619 | 0.00 | 0.00 | 39.49 | 3.07 |
5207 | 5881 | 1.059692 | CACACAAGCGTCATCGTCATC | 59.940 | 52.381 | 0.00 | 0.00 | 39.49 | 2.92 |
5208 | 5882 | 1.070821 | CACACAAGCGTCATCGTCAT | 58.929 | 50.000 | 0.00 | 0.00 | 39.49 | 3.06 |
5209 | 5883 | 1.556591 | GCACACAAGCGTCATCGTCA | 61.557 | 55.000 | 0.00 | 0.00 | 39.49 | 4.35 |
5210 | 5884 | 1.130613 | GCACACAAGCGTCATCGTC | 59.869 | 57.895 | 0.00 | 0.00 | 39.49 | 4.20 |
5211 | 5885 | 0.038618 | TAGCACACAAGCGTCATCGT | 60.039 | 50.000 | 0.00 | 0.00 | 40.15 | 3.73 |
5212 | 5886 | 0.642291 | CTAGCACACAAGCGTCATCG | 59.358 | 55.000 | 0.00 | 0.00 | 40.15 | 3.84 |
5213 | 5887 | 0.371645 | GCTAGCACACAAGCGTCATC | 59.628 | 55.000 | 10.63 | 0.00 | 40.15 | 2.92 |
5214 | 5888 | 0.036952 | AGCTAGCACACAAGCGTCAT | 60.037 | 50.000 | 18.83 | 0.00 | 43.63 | 3.06 |
5215 | 5889 | 0.667487 | GAGCTAGCACACAAGCGTCA | 60.667 | 55.000 | 18.83 | 0.00 | 43.63 | 4.35 |
5216 | 5890 | 1.678269 | CGAGCTAGCACACAAGCGTC | 61.678 | 60.000 | 18.83 | 0.87 | 43.63 | 5.19 |
5217 | 5891 | 1.734477 | CGAGCTAGCACACAAGCGT | 60.734 | 57.895 | 18.83 | 0.00 | 43.63 | 5.07 |
5218 | 5892 | 1.444383 | TCGAGCTAGCACACAAGCG | 60.444 | 57.895 | 18.83 | 8.49 | 43.63 | 4.68 |
5219 | 5893 | 1.678269 | CGTCGAGCTAGCACACAAGC | 61.678 | 60.000 | 18.83 | 0.00 | 39.08 | 4.01 |
5220 | 5894 | 1.073216 | CCGTCGAGCTAGCACACAAG | 61.073 | 60.000 | 18.83 | 3.38 | 0.00 | 3.16 |
5221 | 5895 | 1.080772 | CCGTCGAGCTAGCACACAA | 60.081 | 57.895 | 18.83 | 0.00 | 0.00 | 3.33 |
5222 | 5896 | 2.566529 | CCGTCGAGCTAGCACACA | 59.433 | 61.111 | 18.83 | 0.00 | 0.00 | 3.72 |
5223 | 5897 | 2.202623 | CCCGTCGAGCTAGCACAC | 60.203 | 66.667 | 18.83 | 8.98 | 0.00 | 3.82 |
5224 | 5898 | 3.449227 | CCCCGTCGAGCTAGCACA | 61.449 | 66.667 | 18.83 | 0.00 | 0.00 | 4.57 |
5225 | 5899 | 4.874977 | GCCCCGTCGAGCTAGCAC | 62.875 | 72.222 | 18.83 | 10.18 | 0.00 | 4.40 |
5227 | 5901 | 4.874977 | GTGCCCCGTCGAGCTAGC | 62.875 | 72.222 | 6.62 | 6.62 | 0.00 | 3.42 |
5228 | 5902 | 3.127352 | GAGTGCCCCGTCGAGCTAG | 62.127 | 68.421 | 8.40 | 0.00 | 0.00 | 3.42 |
5229 | 5903 | 3.138798 | GAGTGCCCCGTCGAGCTA | 61.139 | 66.667 | 8.40 | 0.00 | 0.00 | 3.32 |
5231 | 5905 | 3.591254 | AAAGAGTGCCCCGTCGAGC | 62.591 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
5232 | 5906 | 1.738099 | CAAAGAGTGCCCCGTCGAG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
5233 | 5907 | 1.180456 | TACAAAGAGTGCCCCGTCGA | 61.180 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5234 | 5908 | 0.320073 | TTACAAAGAGTGCCCCGTCG | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
5235 | 5909 | 1.804748 | CTTTACAAAGAGTGCCCCGTC | 59.195 | 52.381 | 0.00 | 0.00 | 38.28 | 4.79 |
5236 | 5910 | 1.544759 | CCTTTACAAAGAGTGCCCCGT | 60.545 | 52.381 | 3.25 | 0.00 | 38.28 | 5.28 |
5237 | 5911 | 1.165270 | CCTTTACAAAGAGTGCCCCG | 58.835 | 55.000 | 3.25 | 0.00 | 38.28 | 5.73 |
5238 | 5912 | 1.886542 | CACCTTTACAAAGAGTGCCCC | 59.113 | 52.381 | 3.25 | 0.00 | 38.28 | 5.80 |
5239 | 5913 | 2.293399 | CACACCTTTACAAAGAGTGCCC | 59.707 | 50.000 | 16.55 | 0.00 | 39.07 | 5.36 |
5240 | 5914 | 2.949644 | ACACACCTTTACAAAGAGTGCC | 59.050 | 45.455 | 18.72 | 0.00 | 41.38 | 5.01 |
5241 | 5915 | 3.377172 | ACACACACCTTTACAAAGAGTGC | 59.623 | 43.478 | 18.72 | 0.00 | 41.38 | 4.40 |
5242 | 5916 | 4.394920 | ACACACACACCTTTACAAAGAGTG | 59.605 | 41.667 | 17.86 | 17.86 | 42.35 | 3.51 |
5243 | 5917 | 4.585879 | ACACACACACCTTTACAAAGAGT | 58.414 | 39.130 | 3.25 | 0.00 | 38.28 | 3.24 |
5244 | 5918 | 4.634004 | TGACACACACACCTTTACAAAGAG | 59.366 | 41.667 | 3.25 | 0.00 | 38.28 | 2.85 |
5245 | 5919 | 4.580868 | TGACACACACACCTTTACAAAGA | 58.419 | 39.130 | 3.25 | 0.00 | 38.28 | 2.52 |
5246 | 5920 | 4.955925 | TGACACACACACCTTTACAAAG | 57.044 | 40.909 | 0.00 | 0.00 | 35.79 | 2.77 |
5247 | 5921 | 6.995686 | AGATATGACACACACACCTTTACAAA | 59.004 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
5248 | 5922 | 6.426633 | CAGATATGACACACACACCTTTACAA | 59.573 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
5249 | 5923 | 5.931724 | CAGATATGACACACACACCTTTACA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5250 | 5924 | 5.932303 | ACAGATATGACACACACACCTTTAC | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
5251 | 5925 | 5.931724 | CACAGATATGACACACACACCTTTA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
5252 | 5926 | 4.756642 | CACAGATATGACACACACACCTTT | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 3.11 |
5253 | 5927 | 4.202357 | ACACAGATATGACACACACACCTT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
5254 | 5928 | 3.324846 | ACACAGATATGACACACACACCT | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
5255 | 5929 | 3.433274 | CACACAGATATGACACACACACC | 59.567 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
5256 | 5930 | 4.058124 | ACACACAGATATGACACACACAC | 58.942 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
5257 | 5931 | 4.057432 | CACACACAGATATGACACACACA | 58.943 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
5258 | 5932 | 3.120546 | GCACACACAGATATGACACACAC | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
5259 | 5933 | 3.066380 | GCACACACAGATATGACACACA | 58.934 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
5260 | 5934 | 2.416547 | GGCACACACAGATATGACACAC | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
5261 | 5935 | 2.698803 | GGCACACACAGATATGACACA | 58.301 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
5262 | 5936 | 1.660607 | CGGCACACACAGATATGACAC | 59.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
5263 | 5937 | 2.006552 | GCGGCACACACAGATATGACA | 61.007 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
5264 | 5938 | 0.652592 | GCGGCACACACAGATATGAC | 59.347 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5265 | 5939 | 0.536724 | AGCGGCACACACAGATATGA | 59.463 | 50.000 | 1.45 | 0.00 | 0.00 | 2.15 |
5266 | 5940 | 0.933097 | GAGCGGCACACACAGATATG | 59.067 | 55.000 | 1.45 | 0.00 | 0.00 | 1.78 |
5267 | 5941 | 0.536724 | TGAGCGGCACACACAGATAT | 59.463 | 50.000 | 1.45 | 0.00 | 0.00 | 1.63 |
5268 | 5942 | 0.320050 | TTGAGCGGCACACACAGATA | 59.680 | 50.000 | 1.45 | 0.00 | 0.00 | 1.98 |
5269 | 5943 | 1.071299 | TTGAGCGGCACACACAGAT | 59.929 | 52.632 | 1.45 | 0.00 | 0.00 | 2.90 |
5270 | 5944 | 1.887242 | GTTGAGCGGCACACACAGA | 60.887 | 57.895 | 1.45 | 0.00 | 0.00 | 3.41 |
5271 | 5945 | 2.633657 | GTTGAGCGGCACACACAG | 59.366 | 61.111 | 1.45 | 0.00 | 0.00 | 3.66 |
5272 | 5946 | 3.268603 | CGTTGAGCGGCACACACA | 61.269 | 61.111 | 1.45 | 0.00 | 36.85 | 3.72 |
5281 | 5955 | 1.662876 | CCATCACAAAACCGTTGAGCG | 60.663 | 52.381 | 0.00 | 0.00 | 40.95 | 5.03 |
5282 | 5956 | 1.336755 | ACCATCACAAAACCGTTGAGC | 59.663 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
5283 | 5957 | 3.708563 | AACCATCACAAAACCGTTGAG | 57.291 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
5284 | 5958 | 4.425520 | GAAAACCATCACAAAACCGTTGA | 58.574 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
5285 | 5959 | 3.241784 | CGAAAACCATCACAAAACCGTTG | 59.758 | 43.478 | 0.00 | 0.00 | 0.00 | 4.10 |
5286 | 5960 | 3.440228 | CGAAAACCATCACAAAACCGTT | 58.560 | 40.909 | 0.00 | 0.00 | 0.00 | 4.44 |
5287 | 5961 | 2.796735 | GCGAAAACCATCACAAAACCGT | 60.797 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
5288 | 5962 | 1.784283 | GCGAAAACCATCACAAAACCG | 59.216 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
5289 | 5963 | 2.131972 | GGCGAAAACCATCACAAAACC | 58.868 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
5290 | 5964 | 2.131972 | GGGCGAAAACCATCACAAAAC | 58.868 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
5291 | 5965 | 1.269309 | CGGGCGAAAACCATCACAAAA | 60.269 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
5292 | 5966 | 0.312416 | CGGGCGAAAACCATCACAAA | 59.688 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5293 | 5967 | 1.519751 | CCGGGCGAAAACCATCACAA | 61.520 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
5294 | 5968 | 1.969064 | CCGGGCGAAAACCATCACA | 60.969 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
5295 | 5969 | 1.520600 | AACCGGGCGAAAACCATCAC | 61.521 | 55.000 | 6.32 | 0.00 | 0.00 | 3.06 |
5296 | 5970 | 0.824182 | AAACCGGGCGAAAACCATCA | 60.824 | 50.000 | 6.32 | 0.00 | 0.00 | 3.07 |
5297 | 5971 | 0.315886 | AAAACCGGGCGAAAACCATC | 59.684 | 50.000 | 6.32 | 0.00 | 0.00 | 3.51 |
5298 | 5972 | 0.315886 | GAAAACCGGGCGAAAACCAT | 59.684 | 50.000 | 6.32 | 0.00 | 0.00 | 3.55 |
5299 | 5973 | 1.734748 | GAAAACCGGGCGAAAACCA | 59.265 | 52.632 | 6.32 | 0.00 | 0.00 | 3.67 |
5300 | 5974 | 1.007038 | GGAAAACCGGGCGAAAACC | 60.007 | 57.895 | 6.32 | 0.00 | 0.00 | 3.27 |
5301 | 5975 | 0.315886 | ATGGAAAACCGGGCGAAAAC | 59.684 | 50.000 | 6.32 | 0.00 | 0.00 | 2.43 |
5302 | 5976 | 1.041437 | AATGGAAAACCGGGCGAAAA | 58.959 | 45.000 | 6.32 | 0.00 | 0.00 | 2.29 |
5303 | 5977 | 1.906990 | TAATGGAAAACCGGGCGAAA | 58.093 | 45.000 | 6.32 | 0.00 | 0.00 | 3.46 |
5304 | 5978 | 1.906990 | TTAATGGAAAACCGGGCGAA | 58.093 | 45.000 | 6.32 | 0.00 | 0.00 | 4.70 |
5305 | 5979 | 2.018515 | GATTAATGGAAAACCGGGCGA | 58.981 | 47.619 | 6.32 | 0.00 | 0.00 | 5.54 |
5306 | 5980 | 1.746220 | TGATTAATGGAAAACCGGGCG | 59.254 | 47.619 | 6.32 | 0.00 | 0.00 | 6.13 |
5307 | 5981 | 3.517602 | GTTGATTAATGGAAAACCGGGC | 58.482 | 45.455 | 6.32 | 0.00 | 0.00 | 6.13 |
5308 | 5982 | 4.118093 | GGTTGATTAATGGAAAACCGGG | 57.882 | 45.455 | 6.32 | 0.00 | 31.69 | 5.73 |
5311 | 5985 | 4.218852 | TGTCCGGTTGATTAATGGAAAACC | 59.781 | 41.667 | 0.00 | 1.18 | 37.51 | 3.27 |
5312 | 5986 | 5.379732 | TGTCCGGTTGATTAATGGAAAAC | 57.620 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
5313 | 5987 | 6.597832 | ATTGTCCGGTTGATTAATGGAAAA | 57.402 | 33.333 | 0.00 | 0.00 | 30.84 | 2.29 |
5314 | 5988 | 6.435904 | AGAATTGTCCGGTTGATTAATGGAAA | 59.564 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
5315 | 5989 | 5.949354 | AGAATTGTCCGGTTGATTAATGGAA | 59.051 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5316 | 5990 | 5.505780 | AGAATTGTCCGGTTGATTAATGGA | 58.494 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
5317 | 5991 | 5.590259 | AGAGAATTGTCCGGTTGATTAATGG | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5318 | 5992 | 6.683974 | AGAGAATTGTCCGGTTGATTAATG | 57.316 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
5319 | 5993 | 7.066284 | CAGAAGAGAATTGTCCGGTTGATTAAT | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
5320 | 5994 | 6.371548 | CAGAAGAGAATTGTCCGGTTGATTAA | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5321 | 5995 | 5.874810 | CAGAAGAGAATTGTCCGGTTGATTA | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
5322 | 5996 | 4.697352 | CAGAAGAGAATTGTCCGGTTGATT | 59.303 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5323 | 5997 | 4.256920 | CAGAAGAGAATTGTCCGGTTGAT | 58.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
5324 | 5998 | 3.664107 | CAGAAGAGAATTGTCCGGTTGA | 58.336 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
5325 | 5999 | 2.160417 | GCAGAAGAGAATTGTCCGGTTG | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5326 | 6000 | 2.039084 | AGCAGAAGAGAATTGTCCGGTT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
5327 | 6001 | 1.625818 | AGCAGAAGAGAATTGTCCGGT | 59.374 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
5328 | 6002 | 2.393271 | AGCAGAAGAGAATTGTCCGG | 57.607 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
5329 | 6003 | 3.329386 | TGAAGCAGAAGAGAATTGTCCG | 58.671 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5330 | 6004 | 5.893897 | AATGAAGCAGAAGAGAATTGTCC | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
5331 | 6005 | 7.914346 | CCATTAATGAAGCAGAAGAGAATTGTC | 59.086 | 37.037 | 17.23 | 0.00 | 0.00 | 3.18 |
5332 | 6006 | 7.613022 | TCCATTAATGAAGCAGAAGAGAATTGT | 59.387 | 33.333 | 17.23 | 0.00 | 0.00 | 2.71 |
5333 | 6007 | 7.993101 | TCCATTAATGAAGCAGAAGAGAATTG | 58.007 | 34.615 | 17.23 | 0.00 | 0.00 | 2.32 |
5334 | 6008 | 8.630917 | CATCCATTAATGAAGCAGAAGAGAATT | 58.369 | 33.333 | 17.23 | 0.00 | 0.00 | 2.17 |
5335 | 6009 | 7.997223 | TCATCCATTAATGAAGCAGAAGAGAAT | 59.003 | 33.333 | 17.23 | 0.00 | 32.80 | 2.40 |
5336 | 6010 | 7.341030 | TCATCCATTAATGAAGCAGAAGAGAA | 58.659 | 34.615 | 17.23 | 0.00 | 32.80 | 2.87 |
5337 | 6011 | 6.892485 | TCATCCATTAATGAAGCAGAAGAGA | 58.108 | 36.000 | 17.23 | 1.93 | 32.80 | 3.10 |
5338 | 6012 | 6.205076 | CCTCATCCATTAATGAAGCAGAAGAG | 59.795 | 42.308 | 17.23 | 14.51 | 35.32 | 2.85 |
5339 | 6013 | 6.060136 | CCTCATCCATTAATGAAGCAGAAGA | 58.940 | 40.000 | 17.23 | 6.70 | 35.32 | 2.87 |
5340 | 6014 | 5.278364 | GCCTCATCCATTAATGAAGCAGAAG | 60.278 | 44.000 | 17.23 | 2.73 | 41.00 | 2.85 |
5341 | 6015 | 4.581824 | GCCTCATCCATTAATGAAGCAGAA | 59.418 | 41.667 | 17.23 | 0.00 | 41.00 | 3.02 |
5342 | 6016 | 4.139786 | GCCTCATCCATTAATGAAGCAGA | 58.860 | 43.478 | 17.23 | 5.48 | 41.00 | 4.26 |
5343 | 6017 | 3.887110 | TGCCTCATCCATTAATGAAGCAG | 59.113 | 43.478 | 17.23 | 7.14 | 44.28 | 4.24 |
5344 | 6018 | 3.900971 | TGCCTCATCCATTAATGAAGCA | 58.099 | 40.909 | 17.23 | 12.07 | 45.97 | 3.91 |
5345 | 6019 | 4.924305 | TTGCCTCATCCATTAATGAAGC | 57.076 | 40.909 | 17.23 | 9.90 | 41.47 | 3.86 |
5367 | 6041 | 6.410243 | TTTTTCGAAACGAAGGCAATTTTT | 57.590 | 29.167 | 10.79 | 0.00 | 46.43 | 1.94 |
5407 | 6081 | 5.063691 | TCGTGTTTATATGCGGTCGATTTTT | 59.936 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5408 | 6082 | 4.567558 | TCGTGTTTATATGCGGTCGATTTT | 59.432 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
5409 | 6083 | 4.026310 | GTCGTGTTTATATGCGGTCGATTT | 60.026 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
5410 | 6084 | 3.488310 | GTCGTGTTTATATGCGGTCGATT | 59.512 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
5411 | 6085 | 3.047796 | GTCGTGTTTATATGCGGTCGAT | 58.952 | 45.455 | 0.00 | 0.00 | 0.00 | 3.59 |
5412 | 6086 | 2.453080 | GTCGTGTTTATATGCGGTCGA | 58.547 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
5413 | 6087 | 1.186408 | CGTCGTGTTTATATGCGGTCG | 59.814 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
5414 | 6088 | 2.453080 | TCGTCGTGTTTATATGCGGTC | 58.547 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
5431 | 6105 | 4.021894 | ACAGAACAAATACAGAGCTCTCGT | 60.022 | 41.667 | 14.96 | 17.30 | 34.09 | 4.18 |
5441 | 6115 | 5.942826 | TCATGCACCATACAGAACAAATACA | 59.057 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5487 | 6161 | 4.747108 | TGTGTTTGTTGTTGTTCTTGTTGG | 59.253 | 37.500 | 0.00 | 0.00 | 0.00 | 3.77 |
5489 | 6163 | 6.306837 | CGTATGTGTTTGTTGTTGTTCTTGTT | 59.693 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
5495 | 6169 | 4.156190 | TCCACGTATGTGTTTGTTGTTGTT | 59.844 | 37.500 | 13.91 | 0.00 | 44.92 | 2.83 |
5496 | 6170 | 3.690139 | TCCACGTATGTGTTTGTTGTTGT | 59.310 | 39.130 | 13.91 | 0.00 | 44.92 | 3.32 |
5497 | 6171 | 4.280101 | TCCACGTATGTGTTTGTTGTTG | 57.720 | 40.909 | 13.91 | 0.00 | 44.92 | 3.33 |
5557 | 6231 | 3.763097 | TGCAATATGGAAGCGTTTCTG | 57.237 | 42.857 | 11.94 | 3.14 | 33.68 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.