Multiple sequence alignment - TraesCS1D01G111900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G111900 chr1D 100.000 5581 0 0 1 5581 107221303 107215723 0.000000e+00 10307
1 TraesCS1D01G111900 chr1D 93.056 72 5 0 3338 3409 311688847 311688918 7.650000e-19 106
2 TraesCS1D01G111900 chr1B 94.195 4083 158 41 263 4331 159384173 159388190 0.000000e+00 6154
3 TraesCS1D01G111900 chr1B 94.536 366 17 3 4765 5129 159394399 159394762 3.780000e-156 562
4 TraesCS1D01G111900 chr1B 97.122 278 8 0 4412 4689 159388311 159388588 2.350000e-128 470
5 TraesCS1D01G111900 chr1B 97.382 191 4 1 4687 4877 159388749 159388938 1.940000e-84 324
6 TraesCS1D01G111900 chr1B 93.103 174 9 1 5408 5581 159394830 159395000 9.280000e-63 252
7 TraesCS1D01G111900 chr1B 92.105 76 6 0 3339 3414 491083411 491083486 2.130000e-19 108
8 TraesCS1D01G111900 chr1A 96.731 3304 90 11 1123 4413 109986225 109982927 0.000000e+00 5487
9 TraesCS1D01G111900 chr1A 92.633 733 31 7 369 1079 109987176 109986445 0.000000e+00 1033
10 TraesCS1D01G111900 chr1A 91.787 694 45 11 4412 5101 109982833 109982148 0.000000e+00 955
11 TraesCS1D01G111900 chr1A 89.809 157 12 4 23 176 109987642 109987487 1.230000e-46 198
12 TraesCS1D01G111900 chr6A 88.293 205 22 2 5188 5392 616797217 616797419 1.550000e-60 244
13 TraesCS1D01G111900 chr2B 88.293 205 22 2 5188 5392 13039614 13039816 1.550000e-60 244
14 TraesCS1D01G111900 chr2B 86.058 208 25 4 5188 5395 718636341 718636138 2.620000e-53 220
15 TraesCS1D01G111900 chr2B 86.058 208 22 7 5188 5392 152873165 152872962 3.390000e-52 217
16 TraesCS1D01G111900 chr5B 87.317 205 24 2 5188 5392 468869849 468869647 3.360000e-57 233
17 TraesCS1D01G111900 chr5B 87.081 209 24 3 5188 5395 541163377 541163171 3.360000e-57 233
18 TraesCS1D01G111900 chr7D 87.192 203 24 2 5188 5390 593699137 593699337 4.350000e-56 230
19 TraesCS1D01G111900 chr7D 97.015 67 1 1 3344 3409 204247205 204247271 1.640000e-20 111
20 TraesCS1D01G111900 chr7D 94.286 70 4 0 3344 3413 20238992 20239061 2.130000e-19 108
21 TraesCS1D01G111900 chr4B 86.341 205 26 2 5188 5392 97054701 97054499 7.280000e-54 222
22 TraesCS1D01G111900 chr7B 85.437 206 27 3 5188 5392 627284820 627285023 1.580000e-50 211
23 TraesCS1D01G111900 chr4A 94.667 75 3 1 3344 3417 626981560 626981486 1.270000e-21 115
24 TraesCS1D01G111900 chr6B 94.366 71 4 0 3342 3412 462028698 462028628 5.910000e-20 110
25 TraesCS1D01G111900 chr3B 93.333 75 4 1 3344 3417 672774673 672774747 5.910000e-20 110
26 TraesCS1D01G111900 chr7A 94.286 70 4 0 3344 3413 20293288 20293357 2.130000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G111900 chr1D 107215723 107221303 5580 True 10307.00 10307 100.0000 1 5581 1 chr1D.!!$R1 5580
1 TraesCS1D01G111900 chr1B 159384173 159388938 4765 False 2316.00 6154 96.2330 263 4877 3 chr1B.!!$F2 4614
2 TraesCS1D01G111900 chr1B 159394399 159395000 601 False 407.00 562 93.8195 4765 5581 2 chr1B.!!$F3 816
3 TraesCS1D01G111900 chr1A 109982148 109987642 5494 True 1918.25 5487 92.7400 23 5101 4 chr1A.!!$R1 5078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 364 0.036388 CTTCGCCAGCTGGACCTTTA 60.036 55.000 37.21 12.91 37.39 1.85 F
637 797 0.036952 CTTGCACCGAGAGACCATGT 60.037 55.000 0.00 0.00 0.00 3.21 F
663 823 0.951558 ACACACCGAATGAAACTGCC 59.048 50.000 0.00 0.00 0.00 4.85 F
1080 1240 1.131315 GATTGAGCGGCCTCTGTTTTC 59.869 52.381 0.00 0.00 38.93 2.29 F
1401 1742 1.205893 CTCTTTGGAGAGGAGGGTTCG 59.794 57.143 0.00 0.00 44.69 3.95 F
2772 3115 4.286910 CACAATTGGTAAAGTTGTCGGTG 58.713 43.478 10.83 0.00 34.09 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1790 0.581529 CGTTTTCTCAAGAGCACGCA 59.418 50.000 0.00 0.00 0.00 5.24 R
1534 1875 1.374560 TCACAAACACAGTTCCACCG 58.625 50.000 0.00 0.00 0.00 4.94 R
1908 2249 3.975035 GTGCCTTCTTTTGCTCTTTAACG 59.025 43.478 0.00 0.00 0.00 3.18 R
1909 2250 5.188327 AGTGCCTTCTTTTGCTCTTTAAC 57.812 39.130 0.00 0.00 0.00 2.01 R
3429 3777 8.748380 AGTTTTGCATTAATAAGCAGAGAAAC 57.252 30.769 13.49 13.49 42.39 2.78 R
4698 5332 1.416401 AGCTCCGACTTTGTTCTTCCA 59.584 47.619 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.426023 GTAGCCCCGTAGCCATGG 59.574 66.667 7.63 7.63 0.00 3.66
18 19 3.556306 TAGCCCCGTAGCCATGGC 61.556 66.667 30.12 30.12 44.35 4.40
30 31 1.524621 CCATGGCCGTAGCTTGGAG 60.525 63.158 0.00 0.00 41.80 3.86
39 40 2.168521 CCGTAGCTTGGAGAGGAAATCA 59.831 50.000 0.00 0.00 0.00 2.57
192 194 3.930012 GATCGGAAGGGGGCGAGG 61.930 72.222 0.00 0.00 0.00 4.63
193 195 4.475444 ATCGGAAGGGGGCGAGGA 62.475 66.667 0.00 0.00 0.00 3.71
197 199 2.042843 GAAGGGGGCGAGGAGAGA 60.043 66.667 0.00 0.00 0.00 3.10
198 200 1.686110 GAAGGGGGCGAGGAGAGAA 60.686 63.158 0.00 0.00 0.00 2.87
201 203 2.042843 GGGGCGAGGAGAGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
203 205 2.791868 GGGCGAGGAGAGAAGGAGC 61.792 68.421 0.00 0.00 0.00 4.70
206 208 2.485795 CGAGGAGAGAAGGAGCGGG 61.486 68.421 0.00 0.00 0.00 6.13
207 209 1.076632 GAGGAGAGAAGGAGCGGGA 60.077 63.158 0.00 0.00 0.00 5.14
208 210 1.380650 AGGAGAGAAGGAGCGGGAC 60.381 63.158 0.00 0.00 0.00 4.46
209 211 1.682684 GGAGAGAAGGAGCGGGACA 60.683 63.158 0.00 0.00 0.00 4.02
210 212 1.258445 GGAGAGAAGGAGCGGGACAA 61.258 60.000 0.00 0.00 0.00 3.18
211 213 0.108567 GAGAGAAGGAGCGGGACAAC 60.109 60.000 0.00 0.00 0.00 3.32
212 214 1.079057 GAGAAGGAGCGGGACAACC 60.079 63.158 0.00 0.00 0.00 3.77
213 215 1.827399 GAGAAGGAGCGGGACAACCA 61.827 60.000 0.00 0.00 40.22 3.67
214 216 1.376037 GAAGGAGCGGGACAACCAG 60.376 63.158 0.00 0.00 40.22 4.00
215 217 1.827399 GAAGGAGCGGGACAACCAGA 61.827 60.000 0.00 0.00 40.22 3.86
216 218 1.201429 AAGGAGCGGGACAACCAGAT 61.201 55.000 0.00 0.00 40.22 2.90
217 219 1.153349 GGAGCGGGACAACCAGATC 60.153 63.158 0.00 0.00 43.83 2.75
218 220 1.153349 GAGCGGGACAACCAGATCC 60.153 63.158 0.00 0.00 40.00 3.36
219 221 1.899437 GAGCGGGACAACCAGATCCA 61.899 60.000 0.00 0.00 40.00 3.41
220 222 1.745489 GCGGGACAACCAGATCCAC 60.745 63.158 0.00 0.00 40.22 4.02
221 223 1.676968 CGGGACAACCAGATCCACA 59.323 57.895 0.00 0.00 40.22 4.17
222 224 0.673644 CGGGACAACCAGATCCACAC 60.674 60.000 0.00 0.00 40.22 3.82
223 225 0.322546 GGGACAACCAGATCCACACC 60.323 60.000 0.00 0.00 39.85 4.16
224 226 0.400213 GGACAACCAGATCCACACCA 59.600 55.000 0.00 0.00 34.87 4.17
225 227 1.611673 GGACAACCAGATCCACACCAG 60.612 57.143 0.00 0.00 34.87 4.00
226 228 0.250901 ACAACCAGATCCACACCAGC 60.251 55.000 0.00 0.00 0.00 4.85
291 293 4.451150 GCCGACGCCAGGACATCA 62.451 66.667 0.00 0.00 0.00 3.07
292 294 2.509336 CCGACGCCAGGACATCAC 60.509 66.667 0.00 0.00 0.00 3.06
293 295 2.573869 CGACGCCAGGACATCACT 59.426 61.111 0.00 0.00 0.00 3.41
294 296 1.807165 CGACGCCAGGACATCACTG 60.807 63.158 0.00 0.00 35.74 3.66
296 298 2.046988 CGCCAGGACATCACTGCA 60.047 61.111 0.00 0.00 34.65 4.41
298 300 1.002868 GCCAGGACATCACTGCACT 60.003 57.895 0.00 0.00 34.65 4.40
299 301 1.303799 GCCAGGACATCACTGCACTG 61.304 60.000 0.00 0.00 34.65 3.66
314 316 0.401738 CACTGAGGGAAAAGGCCTCA 59.598 55.000 5.23 0.00 38.12 3.86
334 336 3.364441 GCCGCCTTCACATGCACA 61.364 61.111 0.00 0.00 0.00 4.57
360 362 2.348998 CTTCGCCAGCTGGACCTT 59.651 61.111 37.21 0.00 37.39 3.50
362 364 0.036388 CTTCGCCAGCTGGACCTTTA 60.036 55.000 37.21 12.91 37.39 1.85
433 590 2.203640 ACAGAGGCGACACAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
448 605 1.014804 AGGGAGGAGGTGATCTCAGT 58.985 55.000 0.00 0.00 44.19 3.41
456 613 2.693074 GAGGTGATCTCAGTCTCTTCCC 59.307 54.545 0.00 0.00 42.02 3.97
559 718 8.378421 GTGTATTTCACTCGGTAAATTCTGTAC 58.622 37.037 0.00 0.00 43.13 2.90
617 777 2.806945 TTCAAATCCGATGGCCTCTT 57.193 45.000 3.32 0.00 0.00 2.85
637 797 0.036952 CTTGCACCGAGAGACCATGT 60.037 55.000 0.00 0.00 0.00 3.21
643 803 1.339824 ACCGAGAGACCATGTCGTACT 60.340 52.381 2.53 0.00 42.88 2.73
663 823 0.951558 ACACACCGAATGAAACTGCC 59.048 50.000 0.00 0.00 0.00 4.85
751 911 4.193334 GCAAAATCCCTCGCCGCC 62.193 66.667 0.00 0.00 0.00 6.13
1076 1236 2.185350 CGATTGAGCGGCCTCTGT 59.815 61.111 0.00 0.00 38.93 3.41
1079 1239 1.168714 GATTGAGCGGCCTCTGTTTT 58.831 50.000 0.00 0.00 38.93 2.43
1080 1240 1.131315 GATTGAGCGGCCTCTGTTTTC 59.869 52.381 0.00 0.00 38.93 2.29
1084 1244 3.431725 CGGCCTCTGTTTTCCGGC 61.432 66.667 0.00 0.00 41.75 6.13
1089 1249 1.599797 CTCTGTTTTCCGGCGGGTT 60.600 57.895 27.98 0.00 33.83 4.11
1248 1585 2.743179 GGTGAGATCCCCCGTTCCC 61.743 68.421 0.00 0.00 0.00 3.97
1346 1687 4.772100 AGATGGTTGTATTTTTGGGGTCAG 59.228 41.667 0.00 0.00 0.00 3.51
1358 1699 1.559682 TGGGGTCAGGTAGAGCAATTC 59.440 52.381 0.00 0.00 46.51 2.17
1401 1742 1.205893 CTCTTTGGAGAGGAGGGTTCG 59.794 57.143 0.00 0.00 44.69 3.95
1703 2044 8.087982 TCTGCAACAGACTAATAAAGAACAAG 57.912 34.615 0.00 0.00 35.39 3.16
1707 2048 9.170584 GCAACAGACTAATAAAGAACAAGTTTC 57.829 33.333 0.00 0.00 0.00 2.78
1731 2072 6.376299 TCCAAGAATGATCTGGATTTTCAGTG 59.624 38.462 0.00 0.00 35.59 3.66
1908 2249 7.441458 AGAAAGTAGTTGTATCCACTCACAAAC 59.559 37.037 0.00 0.00 36.47 2.93
1909 2250 5.227908 AGTAGTTGTATCCACTCACAAACG 58.772 41.667 0.00 0.00 36.47 3.60
2260 2602 4.922206 TGCTACAGACATTTCCCATTTCT 58.078 39.130 0.00 0.00 0.00 2.52
2321 2663 5.726980 ATGTTATGGTGCAACATGTCTTT 57.273 34.783 27.55 2.54 43.27 2.52
2772 3115 4.286910 CACAATTGGTAAAGTTGTCGGTG 58.713 43.478 10.83 0.00 34.09 4.94
2784 3127 5.128992 AGTTGTCGGTGTTTTTCAAAAGT 57.871 34.783 0.00 0.00 0.00 2.66
3099 3446 7.872483 ACTTCAGCAACCAAGGTTTAATATTTG 59.128 33.333 0.79 0.00 36.00 2.32
3106 3453 8.921670 CAACCAAGGTTTAATATTTGTTACTGC 58.078 33.333 0.79 0.00 36.00 4.40
3670 4018 3.517038 AAGGTACCTGCCACCCCCT 62.517 63.158 17.14 0.00 36.67 4.79
3721 4069 2.554032 AGTTGCTGCTTGGTGATGTAAC 59.446 45.455 0.00 0.00 0.00 2.50
3970 4321 1.605738 CCTGGCAGCCTTTCAGCTT 60.606 57.895 14.15 0.00 42.61 3.74
4349 4725 2.486472 AGTTTCTCACAGGCTGATGG 57.514 50.000 23.66 10.28 0.00 3.51
4353 4729 0.179702 TCTCACAGGCTGATGGATGC 59.820 55.000 23.66 0.00 0.00 3.91
4371 4747 1.002659 TGCCGTATTGTTAGCCACAGT 59.997 47.619 0.00 0.00 36.48 3.55
4648 5119 3.008594 CACCTTGTATTCTGGTGGGTACA 59.991 47.826 0.00 0.00 45.29 2.90
4683 5154 3.837213 AAGTGCAACCGAATGATCAAG 57.163 42.857 0.00 0.00 37.80 3.02
4690 5324 5.182950 TGCAACCGAATGATCAAGTGTAATT 59.817 36.000 0.00 0.00 0.00 1.40
4698 5332 9.825972 CGAATGATCAAGTGTAATTTGTAAAGT 57.174 29.630 0.00 0.00 34.82 2.66
4877 5514 3.497103 TGAGATGGGTGCAGATTATGG 57.503 47.619 0.00 0.00 0.00 2.74
4962 5600 4.165565 TCTCTCACCCTCGAATCCTAACTA 59.834 45.833 0.00 0.00 0.00 2.24
4982 5620 1.895798 AGTAGCAGTAGAGCAGCACAA 59.104 47.619 0.00 0.00 36.85 3.33
4999 5637 0.326238 CAAGTGGGGAGGTAGGGCTA 60.326 60.000 0.00 0.00 0.00 3.93
5019 5657 1.353694 AGAGAAATGCCAAGACTGCCT 59.646 47.619 0.00 0.00 0.00 4.75
5026 5664 4.778213 ATGCCAAGACTGCCTTCTAATA 57.222 40.909 0.00 0.00 31.42 0.98
5042 5680 0.469917 AATATGGCGCCACTGCTACT 59.530 50.000 35.50 17.37 34.43 2.57
5101 5739 4.095334 TGCAACATAGAATAGCAACAGCAG 59.905 41.667 0.00 0.00 31.42 4.24
5158 5832 5.144100 ACATAAAGGTCAATCCACAAACCA 58.856 37.500 0.00 0.00 39.02 3.67
5165 5839 7.645058 AGGTCAATCCACAAACCATAATAAG 57.355 36.000 0.00 0.00 39.02 1.73
5166 5840 7.182060 AGGTCAATCCACAAACCATAATAAGT 58.818 34.615 0.00 0.00 39.02 2.24
5167 5841 7.339466 AGGTCAATCCACAAACCATAATAAGTC 59.661 37.037 0.00 0.00 39.02 3.01
5168 5842 7.186804 GTCAATCCACAAACCATAATAAGTCG 58.813 38.462 0.00 0.00 0.00 4.18
5169 5843 6.317642 TCAATCCACAAACCATAATAAGTCGG 59.682 38.462 0.00 0.00 0.00 4.79
5170 5844 5.423704 TCCACAAACCATAATAAGTCGGA 57.576 39.130 0.00 0.00 0.00 4.55
5171 5845 5.996644 TCCACAAACCATAATAAGTCGGAT 58.003 37.500 0.00 0.00 0.00 4.18
5172 5846 6.419791 TCCACAAACCATAATAAGTCGGATT 58.580 36.000 0.00 0.00 0.00 3.01
5173 5847 6.887545 TCCACAAACCATAATAAGTCGGATTT 59.112 34.615 0.00 0.00 0.00 2.17
5174 5848 6.972328 CCACAAACCATAATAAGTCGGATTTG 59.028 38.462 0.00 0.00 0.00 2.32
5175 5849 6.472163 CACAAACCATAATAAGTCGGATTTGC 59.528 38.462 0.00 0.00 0.00 3.68
5176 5850 6.377146 ACAAACCATAATAAGTCGGATTTGCT 59.623 34.615 0.00 0.00 0.00 3.91
5177 5851 7.093945 ACAAACCATAATAAGTCGGATTTGCTT 60.094 33.333 0.00 0.00 0.00 3.91
5178 5852 6.377327 ACCATAATAAGTCGGATTTGCTTG 57.623 37.500 0.00 0.00 0.00 4.01
5179 5853 5.215160 CCATAATAAGTCGGATTTGCTTGC 58.785 41.667 0.00 0.00 0.00 4.01
5180 5854 5.009010 CCATAATAAGTCGGATTTGCTTGCT 59.991 40.000 0.00 0.00 0.00 3.91
5181 5855 4.622701 AATAAGTCGGATTTGCTTGCTC 57.377 40.909 0.00 0.00 0.00 4.26
5182 5856 0.798776 AAGTCGGATTTGCTTGCTCG 59.201 50.000 0.00 0.00 0.00 5.03
5183 5857 1.021390 AGTCGGATTTGCTTGCTCGG 61.021 55.000 0.00 0.00 0.00 4.63
5184 5858 1.019278 GTCGGATTTGCTTGCTCGGA 61.019 55.000 0.00 0.00 0.00 4.55
5185 5859 1.019278 TCGGATTTGCTTGCTCGGAC 61.019 55.000 0.00 0.00 0.00 4.79
5186 5860 1.021390 CGGATTTGCTTGCTCGGACT 61.021 55.000 0.00 0.00 0.00 3.85
5187 5861 0.729690 GGATTTGCTTGCTCGGACTC 59.270 55.000 0.00 0.00 0.00 3.36
5188 5862 0.371645 GATTTGCTTGCTCGGACTCG 59.628 55.000 0.00 0.00 37.82 4.18
5189 5863 1.639298 ATTTGCTTGCTCGGACTCGC 61.639 55.000 0.00 0.00 36.13 5.03
5190 5864 4.742201 TGCTTGCTCGGACTCGCC 62.742 66.667 0.00 0.00 36.13 5.54
5191 5865 4.443266 GCTTGCTCGGACTCGCCT 62.443 66.667 0.00 0.00 36.13 5.52
5192 5866 2.507992 CTTGCTCGGACTCGCCTG 60.508 66.667 0.00 0.00 36.13 4.85
5193 5867 3.288308 CTTGCTCGGACTCGCCTGT 62.288 63.158 0.00 0.00 36.13 4.00
5194 5868 2.771763 CTTGCTCGGACTCGCCTGTT 62.772 60.000 0.00 0.00 36.13 3.16
5195 5869 2.048127 GCTCGGACTCGCCTGTTT 60.048 61.111 0.00 0.00 36.13 2.83
5196 5870 2.383527 GCTCGGACTCGCCTGTTTG 61.384 63.158 0.00 0.00 36.13 2.93
5197 5871 1.738099 CTCGGACTCGCCTGTTTGG 60.738 63.158 0.00 0.00 39.35 3.28
5198 5872 2.742372 CGGACTCGCCTGTTTGGG 60.742 66.667 0.00 0.00 36.00 4.12
5206 5880 3.439440 GCCTGTTTGGGGAGAAAGT 57.561 52.632 0.00 0.00 36.00 2.66
5207 5881 0.961753 GCCTGTTTGGGGAGAAAGTG 59.038 55.000 0.00 0.00 36.00 3.16
5208 5882 1.478654 GCCTGTTTGGGGAGAAAGTGA 60.479 52.381 0.00 0.00 36.00 3.41
5209 5883 2.819348 GCCTGTTTGGGGAGAAAGTGAT 60.819 50.000 0.00 0.00 36.00 3.06
5210 5884 2.821969 CCTGTTTGGGGAGAAAGTGATG 59.178 50.000 0.00 0.00 0.00 3.07
5211 5885 3.498481 CCTGTTTGGGGAGAAAGTGATGA 60.498 47.826 0.00 0.00 0.00 2.92
5212 5886 3.486383 TGTTTGGGGAGAAAGTGATGAC 58.514 45.455 0.00 0.00 0.00 3.06
5213 5887 2.472695 TTGGGGAGAAAGTGATGACG 57.527 50.000 0.00 0.00 0.00 4.35
5214 5888 1.639722 TGGGGAGAAAGTGATGACGA 58.360 50.000 0.00 0.00 0.00 4.20
5215 5889 2.187958 TGGGGAGAAAGTGATGACGAT 58.812 47.619 0.00 0.00 0.00 3.73
5216 5890 2.093500 TGGGGAGAAAGTGATGACGATG 60.093 50.000 0.00 0.00 0.00 3.84
5217 5891 2.168521 GGGGAGAAAGTGATGACGATGA 59.831 50.000 0.00 0.00 0.00 2.92
5218 5892 3.190874 GGGAGAAAGTGATGACGATGAC 58.809 50.000 0.00 0.00 0.00 3.06
5219 5893 2.854777 GGAGAAAGTGATGACGATGACG 59.145 50.000 0.00 0.00 45.75 4.35
5220 5894 2.263077 AGAAAGTGATGACGATGACGC 58.737 47.619 0.00 0.00 43.96 5.19
5221 5895 2.094494 AGAAAGTGATGACGATGACGCT 60.094 45.455 0.00 0.00 43.96 5.07
5222 5896 2.370281 AAGTGATGACGATGACGCTT 57.630 45.000 0.00 0.00 43.96 4.68
5223 5897 1.633561 AGTGATGACGATGACGCTTG 58.366 50.000 0.00 0.00 43.96 4.01
5224 5898 1.067565 AGTGATGACGATGACGCTTGT 60.068 47.619 0.00 0.00 43.96 3.16
5225 5899 1.059692 GTGATGACGATGACGCTTGTG 59.940 52.381 0.00 0.00 43.96 3.33
5226 5900 1.336795 TGATGACGATGACGCTTGTGT 60.337 47.619 0.00 0.00 43.96 3.72
5227 5901 1.059692 GATGACGATGACGCTTGTGTG 59.940 52.381 0.00 0.00 43.96 3.82
5228 5902 1.130613 GACGATGACGCTTGTGTGC 59.869 57.895 0.00 0.00 43.96 4.57
5229 5903 1.284982 GACGATGACGCTTGTGTGCT 61.285 55.000 0.00 0.00 43.96 4.40
5230 5904 0.038618 ACGATGACGCTTGTGTGCTA 60.039 50.000 0.00 0.00 43.96 3.49
5231 5905 0.642291 CGATGACGCTTGTGTGCTAG 59.358 55.000 0.00 0.00 0.00 3.42
5232 5906 0.371645 GATGACGCTTGTGTGCTAGC 59.628 55.000 8.10 8.10 39.50 3.42
5233 5907 0.036952 ATGACGCTTGTGTGCTAGCT 60.037 50.000 17.23 0.00 40.45 3.32
5234 5908 0.667487 TGACGCTTGTGTGCTAGCTC 60.667 55.000 17.23 13.38 40.45 4.09
5235 5909 1.678269 GACGCTTGTGTGCTAGCTCG 61.678 60.000 17.23 9.85 40.45 5.03
5236 5910 1.444383 CGCTTGTGTGCTAGCTCGA 60.444 57.895 17.23 5.69 40.45 4.04
5237 5911 1.678269 CGCTTGTGTGCTAGCTCGAC 61.678 60.000 17.23 13.04 40.45 4.20
5238 5912 1.678269 GCTTGTGTGCTAGCTCGACG 61.678 60.000 17.23 2.36 39.71 5.12
5239 5913 1.073216 CTTGTGTGCTAGCTCGACGG 61.073 60.000 17.23 6.92 0.00 4.79
5240 5914 2.202623 GTGTGCTAGCTCGACGGG 60.203 66.667 17.23 0.00 0.00 5.28
5241 5915 3.449227 TGTGCTAGCTCGACGGGG 61.449 66.667 17.23 0.00 0.00 5.73
5242 5916 4.874977 GTGCTAGCTCGACGGGGC 62.875 72.222 17.23 0.92 0.00 5.80
5244 5918 4.874977 GCTAGCTCGACGGGGCAC 62.875 72.222 7.70 0.00 0.00 5.01
5245 5919 3.141488 CTAGCTCGACGGGGCACT 61.141 66.667 14.04 0.00 0.00 4.40
5246 5920 3.127352 CTAGCTCGACGGGGCACTC 62.127 68.421 14.04 0.00 0.00 3.51
5247 5921 3.640257 TAGCTCGACGGGGCACTCT 62.640 63.158 14.04 0.00 0.00 3.24
5248 5922 4.070552 GCTCGACGGGGCACTCTT 62.071 66.667 0.00 0.00 0.00 2.85
5249 5923 2.657237 CTCGACGGGGCACTCTTT 59.343 61.111 0.00 0.00 0.00 2.52
5250 5924 1.738099 CTCGACGGGGCACTCTTTG 60.738 63.158 0.00 0.00 0.00 2.77
5251 5925 2.030562 CGACGGGGCACTCTTTGT 59.969 61.111 0.00 0.00 0.00 2.83
5252 5926 1.180456 TCGACGGGGCACTCTTTGTA 61.180 55.000 0.00 0.00 0.00 2.41
5253 5927 0.320073 CGACGGGGCACTCTTTGTAA 60.320 55.000 0.00 0.00 0.00 2.41
5254 5928 1.874739 CGACGGGGCACTCTTTGTAAA 60.875 52.381 0.00 0.00 0.00 2.01
5255 5929 1.804748 GACGGGGCACTCTTTGTAAAG 59.195 52.381 0.00 0.00 37.36 1.85
5256 5930 1.165270 CGGGGCACTCTTTGTAAAGG 58.835 55.000 4.67 0.00 36.67 3.11
5257 5931 1.544759 CGGGGCACTCTTTGTAAAGGT 60.545 52.381 4.67 0.00 36.67 3.50
5258 5932 1.886542 GGGGCACTCTTTGTAAAGGTG 59.113 52.381 15.51 15.51 38.79 4.00
5259 5933 2.583143 GGGCACTCTTTGTAAAGGTGT 58.417 47.619 18.43 10.59 38.41 4.16
5260 5934 2.293399 GGGCACTCTTTGTAAAGGTGTG 59.707 50.000 18.43 18.26 40.39 3.82
5261 5935 2.949644 GGCACTCTTTGTAAAGGTGTGT 59.050 45.455 20.71 8.85 40.01 3.72
5262 5936 3.243068 GGCACTCTTTGTAAAGGTGTGTG 60.243 47.826 20.71 16.42 40.01 3.82
5263 5937 3.377172 GCACTCTTTGTAAAGGTGTGTGT 59.623 43.478 20.71 6.10 40.01 3.72
5264 5938 4.730613 GCACTCTTTGTAAAGGTGTGTGTG 60.731 45.833 20.71 13.88 40.01 3.82
5265 5939 4.394920 CACTCTTTGTAAAGGTGTGTGTGT 59.605 41.667 16.00 0.00 36.78 3.72
5266 5940 4.634443 ACTCTTTGTAAAGGTGTGTGTGTC 59.366 41.667 4.67 0.00 36.67 3.67
5267 5941 4.580868 TCTTTGTAAAGGTGTGTGTGTCA 58.419 39.130 4.67 0.00 36.67 3.58
5268 5942 5.189928 TCTTTGTAAAGGTGTGTGTGTCAT 58.810 37.500 4.67 0.00 36.67 3.06
5269 5943 6.350103 TCTTTGTAAAGGTGTGTGTGTCATA 58.650 36.000 4.67 0.00 36.67 2.15
5270 5944 6.995686 TCTTTGTAAAGGTGTGTGTGTCATAT 59.004 34.615 4.67 0.00 36.67 1.78
5271 5945 6.795098 TTGTAAAGGTGTGTGTGTCATATC 57.205 37.500 0.00 0.00 0.00 1.63
5272 5946 6.109156 TGTAAAGGTGTGTGTGTCATATCT 57.891 37.500 0.00 0.00 29.85 1.98
5273 5947 5.931724 TGTAAAGGTGTGTGTGTCATATCTG 59.068 40.000 0.00 0.00 29.19 2.90
5274 5948 4.623932 AAGGTGTGTGTGTCATATCTGT 57.376 40.909 0.00 0.00 29.19 3.41
5275 5949 3.930336 AGGTGTGTGTGTCATATCTGTG 58.070 45.455 0.00 0.00 27.57 3.66
5276 5950 3.324846 AGGTGTGTGTGTCATATCTGTGT 59.675 43.478 0.00 0.00 27.57 3.72
5277 5951 3.433274 GGTGTGTGTGTCATATCTGTGTG 59.567 47.826 0.00 0.00 0.00 3.82
5278 5952 4.058124 GTGTGTGTGTCATATCTGTGTGT 58.942 43.478 0.00 0.00 0.00 3.72
5279 5953 4.057432 TGTGTGTGTCATATCTGTGTGTG 58.943 43.478 0.00 0.00 0.00 3.82
5280 5954 3.066380 TGTGTGTCATATCTGTGTGTGC 58.934 45.455 0.00 0.00 0.00 4.57
5281 5955 2.416547 GTGTGTCATATCTGTGTGTGCC 59.583 50.000 0.00 0.00 0.00 5.01
5282 5956 1.660607 GTGTCATATCTGTGTGTGCCG 59.339 52.381 0.00 0.00 0.00 5.69
5283 5957 0.652592 GTCATATCTGTGTGTGCCGC 59.347 55.000 0.00 0.00 0.00 6.53
5284 5958 0.536724 TCATATCTGTGTGTGCCGCT 59.463 50.000 0.00 0.00 0.00 5.52
5285 5959 0.933097 CATATCTGTGTGTGCCGCTC 59.067 55.000 0.00 0.00 0.00 5.03
5286 5960 0.536724 ATATCTGTGTGTGCCGCTCA 59.463 50.000 0.00 0.00 0.00 4.26
5287 5961 0.320050 TATCTGTGTGTGCCGCTCAA 59.680 50.000 0.00 0.00 0.00 3.02
5288 5962 1.230635 ATCTGTGTGTGCCGCTCAAC 61.231 55.000 0.00 0.00 0.00 3.18
5289 5963 3.227372 CTGTGTGTGCCGCTCAACG 62.227 63.158 0.00 0.00 43.15 4.10
5300 5974 1.673760 CGCTCAACGGTTTTGTGATG 58.326 50.000 0.00 0.00 38.44 3.07
5301 5975 1.662876 CGCTCAACGGTTTTGTGATGG 60.663 52.381 0.00 0.00 38.44 3.51
5302 5976 1.336755 GCTCAACGGTTTTGTGATGGT 59.663 47.619 0.00 0.00 0.00 3.55
5303 5977 2.223711 GCTCAACGGTTTTGTGATGGTT 60.224 45.455 0.00 0.00 0.00 3.67
5304 5978 3.736740 GCTCAACGGTTTTGTGATGGTTT 60.737 43.478 0.00 0.00 0.00 3.27
5305 5979 4.429108 CTCAACGGTTTTGTGATGGTTTT 58.571 39.130 0.00 0.00 0.00 2.43
5306 5980 4.425520 TCAACGGTTTTGTGATGGTTTTC 58.574 39.130 0.00 0.00 0.00 2.29
5307 5981 3.073144 ACGGTTTTGTGATGGTTTTCG 57.927 42.857 0.00 0.00 0.00 3.46
5308 5982 1.784283 CGGTTTTGTGATGGTTTTCGC 59.216 47.619 0.00 0.00 0.00 4.70
5309 5983 2.131972 GGTTTTGTGATGGTTTTCGCC 58.868 47.619 0.00 0.00 0.00 5.54
5310 5984 2.131972 GTTTTGTGATGGTTTTCGCCC 58.868 47.619 0.00 0.00 0.00 6.13
5311 5985 0.312416 TTTGTGATGGTTTTCGCCCG 59.688 50.000 0.00 0.00 0.00 6.13
5312 5986 1.519751 TTGTGATGGTTTTCGCCCGG 61.520 55.000 0.00 0.00 0.00 5.73
5313 5987 1.969589 GTGATGGTTTTCGCCCGGT 60.970 57.895 0.00 0.00 0.00 5.28
5314 5988 1.228306 TGATGGTTTTCGCCCGGTT 60.228 52.632 0.00 0.00 0.00 4.44
5315 5989 0.824182 TGATGGTTTTCGCCCGGTTT 60.824 50.000 0.00 0.00 0.00 3.27
5316 5990 0.315886 GATGGTTTTCGCCCGGTTTT 59.684 50.000 0.00 0.00 0.00 2.43
5317 5991 0.315886 ATGGTTTTCGCCCGGTTTTC 59.684 50.000 0.00 0.00 0.00 2.29
5318 5992 1.007038 GGTTTTCGCCCGGTTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
5319 5993 1.734748 GTTTTCGCCCGGTTTTCCA 59.265 52.632 0.00 0.00 40.70 3.53
5320 5994 0.315886 GTTTTCGCCCGGTTTTCCAT 59.684 50.000 0.00 0.00 40.70 3.41
5321 5995 1.041437 TTTTCGCCCGGTTTTCCATT 58.959 45.000 0.00 0.00 40.70 3.16
5322 5996 1.906990 TTTCGCCCGGTTTTCCATTA 58.093 45.000 0.00 0.00 40.70 1.90
5323 5997 1.906990 TTCGCCCGGTTTTCCATTAA 58.093 45.000 0.00 0.00 40.70 1.40
5324 5998 2.131776 TCGCCCGGTTTTCCATTAAT 57.868 45.000 0.00 0.00 40.70 1.40
5325 5999 2.018515 TCGCCCGGTTTTCCATTAATC 58.981 47.619 0.00 0.00 40.70 1.75
5326 6000 1.746220 CGCCCGGTTTTCCATTAATCA 59.254 47.619 0.00 0.00 40.70 2.57
5327 6001 2.164624 CGCCCGGTTTTCCATTAATCAA 59.835 45.455 0.00 0.00 40.70 2.57
5328 6002 3.517602 GCCCGGTTTTCCATTAATCAAC 58.482 45.455 0.00 0.00 40.70 3.18
5329 6003 3.677700 GCCCGGTTTTCCATTAATCAACC 60.678 47.826 0.00 5.72 40.70 3.77
5333 6007 4.740268 GGTTTTCCATTAATCAACCGGAC 58.260 43.478 9.46 0.00 40.31 4.79
5334 6008 4.218852 GGTTTTCCATTAATCAACCGGACA 59.781 41.667 9.46 0.00 40.31 4.02
5335 6009 5.279056 GGTTTTCCATTAATCAACCGGACAA 60.279 40.000 9.46 0.00 40.31 3.18
5336 6010 6.394809 GTTTTCCATTAATCAACCGGACAAT 58.605 36.000 9.46 0.00 0.00 2.71
5337 6011 6.597832 TTTCCATTAATCAACCGGACAATT 57.402 33.333 9.46 6.82 0.00 2.32
5338 6012 5.828299 TCCATTAATCAACCGGACAATTC 57.172 39.130 9.46 0.00 0.00 2.17
5339 6013 5.505780 TCCATTAATCAACCGGACAATTCT 58.494 37.500 9.46 0.00 0.00 2.40
5340 6014 5.588648 TCCATTAATCAACCGGACAATTCTC 59.411 40.000 9.46 0.00 0.00 2.87
5341 6015 5.590259 CCATTAATCAACCGGACAATTCTCT 59.410 40.000 9.46 0.00 0.00 3.10
5342 6016 6.095440 CCATTAATCAACCGGACAATTCTCTT 59.905 38.462 9.46 0.00 0.00 2.85
5343 6017 6.737254 TTAATCAACCGGACAATTCTCTTC 57.263 37.500 9.46 0.00 0.00 2.87
5344 6018 4.559862 ATCAACCGGACAATTCTCTTCT 57.440 40.909 9.46 0.00 0.00 2.85
5345 6019 3.664107 TCAACCGGACAATTCTCTTCTG 58.336 45.455 9.46 0.00 0.00 3.02
5346 6020 2.100605 ACCGGACAATTCTCTTCTGC 57.899 50.000 9.46 0.00 0.00 4.26
5347 6021 1.625818 ACCGGACAATTCTCTTCTGCT 59.374 47.619 9.46 0.00 0.00 4.24
5348 6022 2.039084 ACCGGACAATTCTCTTCTGCTT 59.961 45.455 9.46 0.00 0.00 3.91
5349 6023 2.675348 CCGGACAATTCTCTTCTGCTTC 59.325 50.000 0.00 0.00 0.00 3.86
5350 6024 3.329386 CGGACAATTCTCTTCTGCTTCA 58.671 45.455 0.00 0.00 0.00 3.02
5351 6025 3.937706 CGGACAATTCTCTTCTGCTTCAT 59.062 43.478 0.00 0.00 0.00 2.57
5352 6026 4.394300 CGGACAATTCTCTTCTGCTTCATT 59.606 41.667 0.00 0.00 0.00 2.57
5353 6027 5.582269 CGGACAATTCTCTTCTGCTTCATTA 59.418 40.000 0.00 0.00 0.00 1.90
5354 6028 6.092670 CGGACAATTCTCTTCTGCTTCATTAA 59.907 38.462 0.00 0.00 0.00 1.40
5355 6029 7.201679 CGGACAATTCTCTTCTGCTTCATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
5356 6030 7.914346 GGACAATTCTCTTCTGCTTCATTAATG 59.086 37.037 9.29 9.29 0.00 1.90
5357 6031 7.769220 ACAATTCTCTTCTGCTTCATTAATGG 58.231 34.615 15.36 1.65 0.00 3.16
5358 6032 7.613022 ACAATTCTCTTCTGCTTCATTAATGGA 59.387 33.333 15.36 5.89 0.00 3.41
5359 6033 8.630917 CAATTCTCTTCTGCTTCATTAATGGAT 58.369 33.333 15.36 0.00 0.00 3.41
5360 6034 7.563888 TTCTCTTCTGCTTCATTAATGGATG 57.436 36.000 15.36 7.15 0.00 3.51
5361 6035 6.892485 TCTCTTCTGCTTCATTAATGGATGA 58.108 36.000 15.36 10.20 34.37 2.92
5362 6036 6.990939 TCTCTTCTGCTTCATTAATGGATGAG 59.009 38.462 15.36 17.32 37.35 2.90
5363 6037 6.060136 TCTTCTGCTTCATTAATGGATGAGG 58.940 40.000 15.36 6.49 37.35 3.86
5390 6064 6.410243 AAAAATTGCCTTCGTTTCGAAAAA 57.590 29.167 13.10 3.41 45.23 1.94
5431 6105 2.847959 TCGACCGCATATAAACACGA 57.152 45.000 0.00 0.00 0.00 4.35
5441 6115 4.790123 GCATATAAACACGACGAGAGCTCT 60.790 45.833 18.28 18.28 0.00 4.09
5477 6151 2.653726 GGTGCATGACCAATATGACCA 58.346 47.619 0.00 0.00 45.34 4.02
5487 6161 5.647658 TGACCAATATGACCAGACATTGTTC 59.352 40.000 0.00 0.00 0.00 3.18
5489 6163 4.949238 CCAATATGACCAGACATTGTTCCA 59.051 41.667 0.00 0.00 0.00 3.53
5557 6231 0.179000 CCAGGGTCAGGTAGATGTGC 59.821 60.000 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.426023 CCATGGCTACGGGGCTAC 59.574 66.667 0.00 0.00 41.48 3.58
1 2 3.556306 GCCATGGCTACGGGGCTA 61.556 66.667 29.98 0.00 43.09 3.93
5 6 3.515316 CTACGGCCATGGCTACGGG 62.515 68.421 34.70 21.88 41.60 5.28
6 7 2.029073 CTACGGCCATGGCTACGG 59.971 66.667 34.70 22.78 41.60 4.02
7 8 2.644555 AAGCTACGGCCATGGCTACG 62.645 60.000 34.70 30.61 34.96 3.51
8 9 1.146263 AAGCTACGGCCATGGCTAC 59.854 57.895 34.70 19.13 34.96 3.58
9 10 1.146041 CAAGCTACGGCCATGGCTA 59.854 57.895 34.70 19.87 34.96 3.93
10 11 2.124570 CAAGCTACGGCCATGGCT 60.125 61.111 34.70 19.81 38.17 4.75
11 12 3.211963 CCAAGCTACGGCCATGGC 61.212 66.667 29.47 29.47 38.50 4.40
12 13 1.524621 CTCCAAGCTACGGCCATGG 60.525 63.158 7.63 7.63 43.25 3.66
13 14 0.531532 CTCTCCAAGCTACGGCCATG 60.532 60.000 2.24 0.00 39.73 3.66
14 15 1.690219 CCTCTCCAAGCTACGGCCAT 61.690 60.000 2.24 0.00 39.73 4.40
15 16 2.359169 CCTCTCCAAGCTACGGCCA 61.359 63.158 2.24 0.00 39.73 5.36
16 17 1.614241 TTCCTCTCCAAGCTACGGCC 61.614 60.000 0.00 0.00 39.73 6.13
17 18 0.249398 TTTCCTCTCCAAGCTACGGC 59.751 55.000 0.00 0.00 39.06 5.68
18 19 2.168521 TGATTTCCTCTCCAAGCTACGG 59.831 50.000 0.00 0.00 0.00 4.02
19 20 3.190874 GTGATTTCCTCTCCAAGCTACG 58.809 50.000 0.00 0.00 0.00 3.51
20 21 3.536570 GGTGATTTCCTCTCCAAGCTAC 58.463 50.000 0.00 0.00 37.45 3.58
21 22 2.168521 CGGTGATTTCCTCTCCAAGCTA 59.831 50.000 0.00 0.00 37.37 3.32
30 31 2.128035 CGTCATAGCGGTGATTTCCTC 58.872 52.381 0.00 0.00 0.00 3.71
184 186 2.042843 TCCTTCTCTCCTCGCCCC 60.043 66.667 0.00 0.00 0.00 5.80
186 188 2.811799 GCTCCTTCTCTCCTCGCC 59.188 66.667 0.00 0.00 0.00 5.54
188 190 2.485795 CCCGCTCCTTCTCTCCTCG 61.486 68.421 0.00 0.00 0.00 4.63
190 192 1.380650 GTCCCGCTCCTTCTCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
192 194 0.108567 GTTGTCCCGCTCCTTCTCTC 60.109 60.000 0.00 0.00 0.00 3.20
193 195 1.545706 GGTTGTCCCGCTCCTTCTCT 61.546 60.000 0.00 0.00 0.00 3.10
194 196 1.079057 GGTTGTCCCGCTCCTTCTC 60.079 63.158 0.00 0.00 0.00 2.87
195 197 1.831652 CTGGTTGTCCCGCTCCTTCT 61.832 60.000 0.00 0.00 35.15 2.85
197 199 1.201429 ATCTGGTTGTCCCGCTCCTT 61.201 55.000 0.00 0.00 35.15 3.36
198 200 1.613630 ATCTGGTTGTCCCGCTCCT 60.614 57.895 0.00 0.00 35.15 3.69
201 203 1.918293 TGGATCTGGTTGTCCCGCT 60.918 57.895 0.00 0.00 35.15 5.52
203 205 0.673644 GTGTGGATCTGGTTGTCCCG 60.674 60.000 0.00 0.00 35.15 5.14
206 208 1.813513 CTGGTGTGGATCTGGTTGTC 58.186 55.000 0.00 0.00 0.00 3.18
207 209 0.250901 GCTGGTGTGGATCTGGTTGT 60.251 55.000 0.00 0.00 0.00 3.32
208 210 1.300971 CGCTGGTGTGGATCTGGTTG 61.301 60.000 0.00 0.00 0.00 3.77
209 211 1.003355 CGCTGGTGTGGATCTGGTT 60.003 57.895 0.00 0.00 0.00 3.67
210 212 2.665000 CGCTGGTGTGGATCTGGT 59.335 61.111 0.00 0.00 0.00 4.00
211 213 2.821366 GCGCTGGTGTGGATCTGG 60.821 66.667 0.00 0.00 0.00 3.86
212 214 3.190849 CGCGCTGGTGTGGATCTG 61.191 66.667 5.56 0.00 0.00 2.90
213 215 3.362399 CTCGCGCTGGTGTGGATCT 62.362 63.158 5.56 0.00 0.00 2.75
214 216 2.887568 CTCGCGCTGGTGTGGATC 60.888 66.667 5.56 0.00 0.00 3.36
215 217 4.457496 CCTCGCGCTGGTGTGGAT 62.457 66.667 5.56 0.00 39.16 3.41
280 282 1.002868 AGTGCAGTGATGTCCTGGC 60.003 57.895 0.00 0.00 0.00 4.85
281 283 0.322648 TCAGTGCAGTGATGTCCTGG 59.677 55.000 20.39 0.00 0.00 4.45
282 284 1.675116 CCTCAGTGCAGTGATGTCCTG 60.675 57.143 24.08 11.42 0.00 3.86
291 293 0.538287 GCCTTTTCCCTCAGTGCAGT 60.538 55.000 0.00 0.00 0.00 4.40
292 294 1.246737 GGCCTTTTCCCTCAGTGCAG 61.247 60.000 0.00 0.00 0.00 4.41
293 295 1.228552 GGCCTTTTCCCTCAGTGCA 60.229 57.895 0.00 0.00 0.00 4.57
294 296 0.962855 GAGGCCTTTTCCCTCAGTGC 60.963 60.000 6.77 0.00 46.51 4.40
350 352 2.269241 GCCGCTAAAGGTCCAGCT 59.731 61.111 0.00 0.00 35.57 4.24
376 514 0.039911 AGCTGTCGTACCTTCTCCCT 59.960 55.000 0.00 0.00 0.00 4.20
417 555 2.575993 CTCCCTGTGTCGCCTCTG 59.424 66.667 0.00 0.00 0.00 3.35
427 565 0.712979 TGAGATCACCTCCTCCCTGT 59.287 55.000 0.00 0.00 41.25 4.00
433 590 3.627237 GGAAGAGACTGAGATCACCTCCT 60.627 52.174 0.00 0.00 41.25 3.69
448 605 4.695455 CGCATAACTCAAAAAGGGAAGAGA 59.305 41.667 0.00 0.00 32.59 3.10
456 613 9.820229 TTTGAAGTATACGCATAACTCAAAAAG 57.180 29.630 9.43 0.00 32.17 2.27
559 718 4.677584 TCCGTGAAACTTTCCAAACATTG 58.322 39.130 0.00 0.00 31.75 2.82
617 777 0.247460 CATGGTCTCTCGGTGCAAGA 59.753 55.000 0.00 0.00 0.00 3.02
637 797 4.022935 AGTTTCATTCGGTGTGTAGTACGA 60.023 41.667 0.00 0.00 0.00 3.43
643 803 2.147958 GGCAGTTTCATTCGGTGTGTA 58.852 47.619 0.00 0.00 0.00 2.90
663 823 0.972983 AGTGGACTCCGGATGTCAGG 60.973 60.000 25.48 9.80 36.26 3.86
957 1117 0.617249 AAGTGGGCTCCTCTCCTCTG 60.617 60.000 0.00 0.00 0.00 3.35
1058 1218 3.267860 CAGAGGCCGCTCAATCGC 61.268 66.667 5.80 0.00 0.00 4.58
1059 1219 1.021390 AAACAGAGGCCGCTCAATCG 61.021 55.000 5.80 0.00 0.00 3.34
1071 1231 1.170290 AAACCCGCCGGAAAACAGAG 61.170 55.000 5.05 0.00 0.00 3.35
1076 1236 1.041437 AATCAAAACCCGCCGGAAAA 58.959 45.000 5.05 0.00 0.00 2.29
1079 1239 1.579084 CGAAATCAAAACCCGCCGGA 61.579 55.000 5.05 0.00 0.00 5.14
1080 1240 1.154112 CGAAATCAAAACCCGCCGG 60.154 57.895 0.00 0.00 0.00 6.13
1084 1244 1.334288 GCGCACGAAATCAAAACCCG 61.334 55.000 0.30 0.00 0.00 5.28
1089 1249 0.040514 CACCAGCGCACGAAATCAAA 60.041 50.000 11.47 0.00 0.00 2.69
1133 1469 1.946475 CTCCGTCCTCGTTCCTTCCC 61.946 65.000 0.00 0.00 35.01 3.97
1136 1472 1.982938 CCCTCCGTCCTCGTTCCTT 60.983 63.158 0.00 0.00 35.01 3.36
1248 1585 6.336392 GTCAACGAACAAAATCAATGAAACG 58.664 36.000 0.00 0.00 0.00 3.60
1346 1687 5.582665 CAGTTCACCTAAGAATTGCTCTACC 59.417 44.000 0.00 0.00 32.46 3.18
1358 1699 8.091449 AGAGACAAATAAGACAGTTCACCTAAG 58.909 37.037 0.00 0.00 0.00 2.18
1401 1742 4.320057 CCTCAAAGTGATGAACAGAACAGC 60.320 45.833 0.00 0.00 0.00 4.40
1449 1790 0.581529 CGTTTTCTCAAGAGCACGCA 59.418 50.000 0.00 0.00 0.00 5.24
1534 1875 1.374560 TCACAAACACAGTTCCACCG 58.625 50.000 0.00 0.00 0.00 4.94
1572 1913 8.998558 AGCAAATAAGTTTCACTAACGTTAAC 57.001 30.769 9.68 6.14 41.78 2.01
1703 2044 7.605449 TGAAAATCCAGATCATTCTTGGAAAC 58.395 34.615 4.86 0.00 34.76 2.78
1707 2048 6.376299 TCACTGAAAATCCAGATCATTCTTGG 59.624 38.462 0.00 0.00 37.59 3.61
1908 2249 3.975035 GTGCCTTCTTTTGCTCTTTAACG 59.025 43.478 0.00 0.00 0.00 3.18
1909 2250 5.188327 AGTGCCTTCTTTTGCTCTTTAAC 57.812 39.130 0.00 0.00 0.00 2.01
2026 2367 5.913137 ATGTGACAACCAAAGTCTTCAAA 57.087 34.783 0.00 0.00 36.94 2.69
2030 2371 7.936847 TGTAGATTATGTGACAACCAAAGTCTT 59.063 33.333 0.00 0.00 36.94 3.01
3429 3777 8.748380 AGTTTTGCATTAATAAGCAGAGAAAC 57.252 30.769 13.49 13.49 42.39 2.78
3670 4018 4.324267 GCTAACAAAGAGCAGGGAAGTTA 58.676 43.478 0.00 0.00 39.84 2.24
3747 4095 5.189736 TGACATTGCTAGGACCTATTTCAGT 59.810 40.000 0.46 0.00 0.00 3.41
4349 4725 2.285083 TGTGGCTAACAATACGGCATC 58.715 47.619 0.00 0.00 35.24 3.91
4353 4729 4.119442 AGTACTGTGGCTAACAATACGG 57.881 45.455 0.00 0.00 44.39 4.02
4355 4731 8.712285 TTATGAAGTACTGTGGCTAACAATAC 57.288 34.615 0.00 4.27 40.92 1.89
4371 4747 9.010029 GGAGAAAATCAAGTGGTTTATGAAGTA 57.990 33.333 0.00 0.00 0.00 2.24
4648 5119 5.585047 GGTTGCACTTATTCCGATCTTACTT 59.415 40.000 0.00 0.00 0.00 2.24
4683 5154 9.575783 TTTGTTCTTCCACTTTACAAATTACAC 57.424 29.630 0.00 0.00 34.75 2.90
4690 5324 5.065474 CCGACTTTGTTCTTCCACTTTACAA 59.935 40.000 0.00 0.00 0.00 2.41
4698 5332 1.416401 AGCTCCGACTTTGTTCTTCCA 59.584 47.619 0.00 0.00 0.00 3.53
4943 5581 4.246712 ACTAGTTAGGATTCGAGGGTGA 57.753 45.455 0.00 0.00 0.00 4.02
4962 5600 1.550327 TGTGCTGCTCTACTGCTACT 58.450 50.000 0.00 0.00 43.25 2.57
4982 5620 0.929734 TCTAGCCCTACCTCCCCACT 60.930 60.000 0.00 0.00 0.00 4.00
5019 5657 1.593196 GCAGTGGCGCCATATTAGAA 58.407 50.000 35.23 2.76 0.00 2.10
5042 5680 2.172851 ACCGGTCTTTGTTTATCGCA 57.827 45.000 0.00 0.00 0.00 5.10
5071 5709 7.986889 TGTTGCTATTCTATGTTGCAGAATCTA 59.013 33.333 1.74 0.00 40.91 1.98
5101 5739 0.467659 TTCCTCGCTAGGGGCTAGTC 60.468 60.000 4.14 0.00 43.84 2.59
5122 5760 7.496346 TGACCTTTATGTAAGAACAGGATCT 57.504 36.000 0.00 0.00 39.49 2.75
5128 5802 7.227873 TGTGGATTGACCTTTATGTAAGAACA 58.772 34.615 0.00 0.00 38.71 3.18
5131 5805 7.175990 GGTTTGTGGATTGACCTTTATGTAAGA 59.824 37.037 0.00 0.00 39.86 2.10
5143 5817 7.186804 CGACTTATTATGGTTTGTGGATTGAC 58.813 38.462 0.00 0.00 0.00 3.18
5158 5832 5.050091 CGAGCAAGCAAATCCGACTTATTAT 60.050 40.000 0.00 0.00 0.00 1.28
5165 5839 1.019278 TCCGAGCAAGCAAATCCGAC 61.019 55.000 0.00 0.00 0.00 4.79
5166 5840 1.019278 GTCCGAGCAAGCAAATCCGA 61.019 55.000 0.00 0.00 0.00 4.55
5167 5841 1.021390 AGTCCGAGCAAGCAAATCCG 61.021 55.000 0.00 0.00 0.00 4.18
5168 5842 0.729690 GAGTCCGAGCAAGCAAATCC 59.270 55.000 0.00 0.00 0.00 3.01
5169 5843 0.371645 CGAGTCCGAGCAAGCAAATC 59.628 55.000 0.00 0.00 38.22 2.17
5170 5844 1.639298 GCGAGTCCGAGCAAGCAAAT 61.639 55.000 0.00 0.00 38.22 2.32
5171 5845 2.317609 GCGAGTCCGAGCAAGCAAA 61.318 57.895 0.00 0.00 38.22 3.68
5172 5846 2.738521 GCGAGTCCGAGCAAGCAA 60.739 61.111 0.00 0.00 38.22 3.91
5173 5847 4.742201 GGCGAGTCCGAGCAAGCA 62.742 66.667 0.00 0.00 38.22 3.91
5174 5848 4.443266 AGGCGAGTCCGAGCAAGC 62.443 66.667 0.00 0.00 40.77 4.01
5175 5849 2.507992 CAGGCGAGTCCGAGCAAG 60.508 66.667 0.00 0.00 40.77 4.01
5176 5850 2.377628 AAACAGGCGAGTCCGAGCAA 62.378 55.000 0.00 0.00 40.77 3.91
5177 5851 2.867855 AAACAGGCGAGTCCGAGCA 61.868 57.895 0.00 0.00 40.77 4.26
5178 5852 2.048127 AAACAGGCGAGTCCGAGC 60.048 61.111 0.00 0.00 40.77 5.03
5179 5853 1.738099 CCAAACAGGCGAGTCCGAG 60.738 63.158 0.00 0.00 40.77 4.63
5180 5854 2.342279 CCAAACAGGCGAGTCCGA 59.658 61.111 0.00 0.00 40.77 4.55
5181 5855 2.742372 CCCAAACAGGCGAGTCCG 60.742 66.667 0.00 0.00 40.77 4.79
5182 5856 2.359975 CCCCAAACAGGCGAGTCC 60.360 66.667 0.00 0.00 35.39 3.85
5183 5857 1.376037 CTCCCCAAACAGGCGAGTC 60.376 63.158 0.00 0.00 35.39 3.36
5184 5858 1.415672 TTCTCCCCAAACAGGCGAGT 61.416 55.000 0.00 0.00 35.39 4.18
5185 5859 0.250727 TTTCTCCCCAAACAGGCGAG 60.251 55.000 0.00 0.00 35.39 5.03
5186 5860 0.250727 CTTTCTCCCCAAACAGGCGA 60.251 55.000 0.00 0.00 35.39 5.54
5187 5861 0.537371 ACTTTCTCCCCAAACAGGCG 60.537 55.000 0.00 0.00 35.39 5.52
5188 5862 0.961753 CACTTTCTCCCCAAACAGGC 59.038 55.000 0.00 0.00 35.39 4.85
5189 5863 2.656947 TCACTTTCTCCCCAAACAGG 57.343 50.000 0.00 0.00 37.03 4.00
5190 5864 3.503748 GTCATCACTTTCTCCCCAAACAG 59.496 47.826 0.00 0.00 0.00 3.16
5191 5865 3.486383 GTCATCACTTTCTCCCCAAACA 58.514 45.455 0.00 0.00 0.00 2.83
5192 5866 2.484264 CGTCATCACTTTCTCCCCAAAC 59.516 50.000 0.00 0.00 0.00 2.93
5193 5867 2.370519 TCGTCATCACTTTCTCCCCAAA 59.629 45.455 0.00 0.00 0.00 3.28
5194 5868 1.974957 TCGTCATCACTTTCTCCCCAA 59.025 47.619 0.00 0.00 0.00 4.12
5195 5869 1.639722 TCGTCATCACTTTCTCCCCA 58.360 50.000 0.00 0.00 0.00 4.96
5196 5870 2.168521 TCATCGTCATCACTTTCTCCCC 59.831 50.000 0.00 0.00 0.00 4.81
5197 5871 3.190874 GTCATCGTCATCACTTTCTCCC 58.809 50.000 0.00 0.00 0.00 4.30
5198 5872 2.854777 CGTCATCGTCATCACTTTCTCC 59.145 50.000 0.00 0.00 0.00 3.71
5199 5873 2.280183 GCGTCATCGTCATCACTTTCTC 59.720 50.000 0.00 0.00 39.49 2.87
5200 5874 2.094494 AGCGTCATCGTCATCACTTTCT 60.094 45.455 0.00 0.00 39.49 2.52
5201 5875 2.263077 AGCGTCATCGTCATCACTTTC 58.737 47.619 0.00 0.00 39.49 2.62
5202 5876 2.370281 AGCGTCATCGTCATCACTTT 57.630 45.000 0.00 0.00 39.49 2.66
5203 5877 1.995484 CAAGCGTCATCGTCATCACTT 59.005 47.619 0.00 0.00 39.49 3.16
5204 5878 1.067565 ACAAGCGTCATCGTCATCACT 60.068 47.619 0.00 0.00 39.49 3.41
5205 5879 1.059692 CACAAGCGTCATCGTCATCAC 59.940 52.381 0.00 0.00 39.49 3.06
5206 5880 1.336795 ACACAAGCGTCATCGTCATCA 60.337 47.619 0.00 0.00 39.49 3.07
5207 5881 1.059692 CACACAAGCGTCATCGTCATC 59.940 52.381 0.00 0.00 39.49 2.92
5208 5882 1.070821 CACACAAGCGTCATCGTCAT 58.929 50.000 0.00 0.00 39.49 3.06
5209 5883 1.556591 GCACACAAGCGTCATCGTCA 61.557 55.000 0.00 0.00 39.49 4.35
5210 5884 1.130613 GCACACAAGCGTCATCGTC 59.869 57.895 0.00 0.00 39.49 4.20
5211 5885 0.038618 TAGCACACAAGCGTCATCGT 60.039 50.000 0.00 0.00 40.15 3.73
5212 5886 0.642291 CTAGCACACAAGCGTCATCG 59.358 55.000 0.00 0.00 40.15 3.84
5213 5887 0.371645 GCTAGCACACAAGCGTCATC 59.628 55.000 10.63 0.00 40.15 2.92
5214 5888 0.036952 AGCTAGCACACAAGCGTCAT 60.037 50.000 18.83 0.00 43.63 3.06
5215 5889 0.667487 GAGCTAGCACACAAGCGTCA 60.667 55.000 18.83 0.00 43.63 4.35
5216 5890 1.678269 CGAGCTAGCACACAAGCGTC 61.678 60.000 18.83 0.87 43.63 5.19
5217 5891 1.734477 CGAGCTAGCACACAAGCGT 60.734 57.895 18.83 0.00 43.63 5.07
5218 5892 1.444383 TCGAGCTAGCACACAAGCG 60.444 57.895 18.83 8.49 43.63 4.68
5219 5893 1.678269 CGTCGAGCTAGCACACAAGC 61.678 60.000 18.83 0.00 39.08 4.01
5220 5894 1.073216 CCGTCGAGCTAGCACACAAG 61.073 60.000 18.83 3.38 0.00 3.16
5221 5895 1.080772 CCGTCGAGCTAGCACACAA 60.081 57.895 18.83 0.00 0.00 3.33
5222 5896 2.566529 CCGTCGAGCTAGCACACA 59.433 61.111 18.83 0.00 0.00 3.72
5223 5897 2.202623 CCCGTCGAGCTAGCACAC 60.203 66.667 18.83 8.98 0.00 3.82
5224 5898 3.449227 CCCCGTCGAGCTAGCACA 61.449 66.667 18.83 0.00 0.00 4.57
5225 5899 4.874977 GCCCCGTCGAGCTAGCAC 62.875 72.222 18.83 10.18 0.00 4.40
5227 5901 4.874977 GTGCCCCGTCGAGCTAGC 62.875 72.222 6.62 6.62 0.00 3.42
5228 5902 3.127352 GAGTGCCCCGTCGAGCTAG 62.127 68.421 8.40 0.00 0.00 3.42
5229 5903 3.138798 GAGTGCCCCGTCGAGCTA 61.139 66.667 8.40 0.00 0.00 3.32
5231 5905 3.591254 AAAGAGTGCCCCGTCGAGC 62.591 63.158 0.00 0.00 0.00 5.03
5232 5906 1.738099 CAAAGAGTGCCCCGTCGAG 60.738 63.158 0.00 0.00 0.00 4.04
5233 5907 1.180456 TACAAAGAGTGCCCCGTCGA 61.180 55.000 0.00 0.00 0.00 4.20
5234 5908 0.320073 TTACAAAGAGTGCCCCGTCG 60.320 55.000 0.00 0.00 0.00 5.12
5235 5909 1.804748 CTTTACAAAGAGTGCCCCGTC 59.195 52.381 0.00 0.00 38.28 4.79
5236 5910 1.544759 CCTTTACAAAGAGTGCCCCGT 60.545 52.381 3.25 0.00 38.28 5.28
5237 5911 1.165270 CCTTTACAAAGAGTGCCCCG 58.835 55.000 3.25 0.00 38.28 5.73
5238 5912 1.886542 CACCTTTACAAAGAGTGCCCC 59.113 52.381 3.25 0.00 38.28 5.80
5239 5913 2.293399 CACACCTTTACAAAGAGTGCCC 59.707 50.000 16.55 0.00 39.07 5.36
5240 5914 2.949644 ACACACCTTTACAAAGAGTGCC 59.050 45.455 18.72 0.00 41.38 5.01
5241 5915 3.377172 ACACACACCTTTACAAAGAGTGC 59.623 43.478 18.72 0.00 41.38 4.40
5242 5916 4.394920 ACACACACACCTTTACAAAGAGTG 59.605 41.667 17.86 17.86 42.35 3.51
5243 5917 4.585879 ACACACACACCTTTACAAAGAGT 58.414 39.130 3.25 0.00 38.28 3.24
5244 5918 4.634004 TGACACACACACCTTTACAAAGAG 59.366 41.667 3.25 0.00 38.28 2.85
5245 5919 4.580868 TGACACACACACCTTTACAAAGA 58.419 39.130 3.25 0.00 38.28 2.52
5246 5920 4.955925 TGACACACACACCTTTACAAAG 57.044 40.909 0.00 0.00 35.79 2.77
5247 5921 6.995686 AGATATGACACACACACCTTTACAAA 59.004 34.615 0.00 0.00 0.00 2.83
5248 5922 6.426633 CAGATATGACACACACACCTTTACAA 59.573 38.462 0.00 0.00 0.00 2.41
5249 5923 5.931724 CAGATATGACACACACACCTTTACA 59.068 40.000 0.00 0.00 0.00 2.41
5250 5924 5.932303 ACAGATATGACACACACACCTTTAC 59.068 40.000 0.00 0.00 0.00 2.01
5251 5925 5.931724 CACAGATATGACACACACACCTTTA 59.068 40.000 0.00 0.00 0.00 1.85
5252 5926 4.756642 CACAGATATGACACACACACCTTT 59.243 41.667 0.00 0.00 0.00 3.11
5253 5927 4.202357 ACACAGATATGACACACACACCTT 60.202 41.667 0.00 0.00 0.00 3.50
5254 5928 3.324846 ACACAGATATGACACACACACCT 59.675 43.478 0.00 0.00 0.00 4.00
5255 5929 3.433274 CACACAGATATGACACACACACC 59.567 47.826 0.00 0.00 0.00 4.16
5256 5930 4.058124 ACACACAGATATGACACACACAC 58.942 43.478 0.00 0.00 0.00 3.82
5257 5931 4.057432 CACACACAGATATGACACACACA 58.943 43.478 0.00 0.00 0.00 3.72
5258 5932 3.120546 GCACACACAGATATGACACACAC 60.121 47.826 0.00 0.00 0.00 3.82
5259 5933 3.066380 GCACACACAGATATGACACACA 58.934 45.455 0.00 0.00 0.00 3.72
5260 5934 2.416547 GGCACACACAGATATGACACAC 59.583 50.000 0.00 0.00 0.00 3.82
5261 5935 2.698803 GGCACACACAGATATGACACA 58.301 47.619 0.00 0.00 0.00 3.72
5262 5936 1.660607 CGGCACACACAGATATGACAC 59.339 52.381 0.00 0.00 0.00 3.67
5263 5937 2.006552 GCGGCACACACAGATATGACA 61.007 52.381 0.00 0.00 0.00 3.58
5264 5938 0.652592 GCGGCACACACAGATATGAC 59.347 55.000 0.00 0.00 0.00 3.06
5265 5939 0.536724 AGCGGCACACACAGATATGA 59.463 50.000 1.45 0.00 0.00 2.15
5266 5940 0.933097 GAGCGGCACACACAGATATG 59.067 55.000 1.45 0.00 0.00 1.78
5267 5941 0.536724 TGAGCGGCACACACAGATAT 59.463 50.000 1.45 0.00 0.00 1.63
5268 5942 0.320050 TTGAGCGGCACACACAGATA 59.680 50.000 1.45 0.00 0.00 1.98
5269 5943 1.071299 TTGAGCGGCACACACAGAT 59.929 52.632 1.45 0.00 0.00 2.90
5270 5944 1.887242 GTTGAGCGGCACACACAGA 60.887 57.895 1.45 0.00 0.00 3.41
5271 5945 2.633657 GTTGAGCGGCACACACAG 59.366 61.111 1.45 0.00 0.00 3.66
5272 5946 3.268603 CGTTGAGCGGCACACACA 61.269 61.111 1.45 0.00 36.85 3.72
5281 5955 1.662876 CCATCACAAAACCGTTGAGCG 60.663 52.381 0.00 0.00 40.95 5.03
5282 5956 1.336755 ACCATCACAAAACCGTTGAGC 59.663 47.619 0.00 0.00 0.00 4.26
5283 5957 3.708563 AACCATCACAAAACCGTTGAG 57.291 42.857 0.00 0.00 0.00 3.02
5284 5958 4.425520 GAAAACCATCACAAAACCGTTGA 58.574 39.130 0.00 0.00 0.00 3.18
5285 5959 3.241784 CGAAAACCATCACAAAACCGTTG 59.758 43.478 0.00 0.00 0.00 4.10
5286 5960 3.440228 CGAAAACCATCACAAAACCGTT 58.560 40.909 0.00 0.00 0.00 4.44
5287 5961 2.796735 GCGAAAACCATCACAAAACCGT 60.797 45.455 0.00 0.00 0.00 4.83
5288 5962 1.784283 GCGAAAACCATCACAAAACCG 59.216 47.619 0.00 0.00 0.00 4.44
5289 5963 2.131972 GGCGAAAACCATCACAAAACC 58.868 47.619 0.00 0.00 0.00 3.27
5290 5964 2.131972 GGGCGAAAACCATCACAAAAC 58.868 47.619 0.00 0.00 0.00 2.43
5291 5965 1.269309 CGGGCGAAAACCATCACAAAA 60.269 47.619 0.00 0.00 0.00 2.44
5292 5966 0.312416 CGGGCGAAAACCATCACAAA 59.688 50.000 0.00 0.00 0.00 2.83
5293 5967 1.519751 CCGGGCGAAAACCATCACAA 61.520 55.000 0.00 0.00 0.00 3.33
5294 5968 1.969064 CCGGGCGAAAACCATCACA 60.969 57.895 0.00 0.00 0.00 3.58
5295 5969 1.520600 AACCGGGCGAAAACCATCAC 61.521 55.000 6.32 0.00 0.00 3.06
5296 5970 0.824182 AAACCGGGCGAAAACCATCA 60.824 50.000 6.32 0.00 0.00 3.07
5297 5971 0.315886 AAAACCGGGCGAAAACCATC 59.684 50.000 6.32 0.00 0.00 3.51
5298 5972 0.315886 GAAAACCGGGCGAAAACCAT 59.684 50.000 6.32 0.00 0.00 3.55
5299 5973 1.734748 GAAAACCGGGCGAAAACCA 59.265 52.632 6.32 0.00 0.00 3.67
5300 5974 1.007038 GGAAAACCGGGCGAAAACC 60.007 57.895 6.32 0.00 0.00 3.27
5301 5975 0.315886 ATGGAAAACCGGGCGAAAAC 59.684 50.000 6.32 0.00 0.00 2.43
5302 5976 1.041437 AATGGAAAACCGGGCGAAAA 58.959 45.000 6.32 0.00 0.00 2.29
5303 5977 1.906990 TAATGGAAAACCGGGCGAAA 58.093 45.000 6.32 0.00 0.00 3.46
5304 5978 1.906990 TTAATGGAAAACCGGGCGAA 58.093 45.000 6.32 0.00 0.00 4.70
5305 5979 2.018515 GATTAATGGAAAACCGGGCGA 58.981 47.619 6.32 0.00 0.00 5.54
5306 5980 1.746220 TGATTAATGGAAAACCGGGCG 59.254 47.619 6.32 0.00 0.00 6.13
5307 5981 3.517602 GTTGATTAATGGAAAACCGGGC 58.482 45.455 6.32 0.00 0.00 6.13
5308 5982 4.118093 GGTTGATTAATGGAAAACCGGG 57.882 45.455 6.32 0.00 31.69 5.73
5311 5985 4.218852 TGTCCGGTTGATTAATGGAAAACC 59.781 41.667 0.00 1.18 37.51 3.27
5312 5986 5.379732 TGTCCGGTTGATTAATGGAAAAC 57.620 39.130 0.00 0.00 0.00 2.43
5313 5987 6.597832 ATTGTCCGGTTGATTAATGGAAAA 57.402 33.333 0.00 0.00 30.84 2.29
5314 5988 6.435904 AGAATTGTCCGGTTGATTAATGGAAA 59.564 34.615 0.00 0.00 0.00 3.13
5315 5989 5.949354 AGAATTGTCCGGTTGATTAATGGAA 59.051 36.000 0.00 0.00 0.00 3.53
5316 5990 5.505780 AGAATTGTCCGGTTGATTAATGGA 58.494 37.500 0.00 0.00 0.00 3.41
5317 5991 5.590259 AGAGAATTGTCCGGTTGATTAATGG 59.410 40.000 0.00 0.00 0.00 3.16
5318 5992 6.683974 AGAGAATTGTCCGGTTGATTAATG 57.316 37.500 0.00 0.00 0.00 1.90
5319 5993 7.066284 CAGAAGAGAATTGTCCGGTTGATTAAT 59.934 37.037 0.00 0.00 0.00 1.40
5320 5994 6.371548 CAGAAGAGAATTGTCCGGTTGATTAA 59.628 38.462 0.00 0.00 0.00 1.40
5321 5995 5.874810 CAGAAGAGAATTGTCCGGTTGATTA 59.125 40.000 0.00 0.00 0.00 1.75
5322 5996 4.697352 CAGAAGAGAATTGTCCGGTTGATT 59.303 41.667 0.00 0.00 0.00 2.57
5323 5997 4.256920 CAGAAGAGAATTGTCCGGTTGAT 58.743 43.478 0.00 0.00 0.00 2.57
5324 5998 3.664107 CAGAAGAGAATTGTCCGGTTGA 58.336 45.455 0.00 0.00 0.00 3.18
5325 5999 2.160417 GCAGAAGAGAATTGTCCGGTTG 59.840 50.000 0.00 0.00 0.00 3.77
5326 6000 2.039084 AGCAGAAGAGAATTGTCCGGTT 59.961 45.455 0.00 0.00 0.00 4.44
5327 6001 1.625818 AGCAGAAGAGAATTGTCCGGT 59.374 47.619 0.00 0.00 0.00 5.28
5328 6002 2.393271 AGCAGAAGAGAATTGTCCGG 57.607 50.000 0.00 0.00 0.00 5.14
5329 6003 3.329386 TGAAGCAGAAGAGAATTGTCCG 58.671 45.455 0.00 0.00 0.00 4.79
5330 6004 5.893897 AATGAAGCAGAAGAGAATTGTCC 57.106 39.130 0.00 0.00 0.00 4.02
5331 6005 7.914346 CCATTAATGAAGCAGAAGAGAATTGTC 59.086 37.037 17.23 0.00 0.00 3.18
5332 6006 7.613022 TCCATTAATGAAGCAGAAGAGAATTGT 59.387 33.333 17.23 0.00 0.00 2.71
5333 6007 7.993101 TCCATTAATGAAGCAGAAGAGAATTG 58.007 34.615 17.23 0.00 0.00 2.32
5334 6008 8.630917 CATCCATTAATGAAGCAGAAGAGAATT 58.369 33.333 17.23 0.00 0.00 2.17
5335 6009 7.997223 TCATCCATTAATGAAGCAGAAGAGAAT 59.003 33.333 17.23 0.00 32.80 2.40
5336 6010 7.341030 TCATCCATTAATGAAGCAGAAGAGAA 58.659 34.615 17.23 0.00 32.80 2.87
5337 6011 6.892485 TCATCCATTAATGAAGCAGAAGAGA 58.108 36.000 17.23 1.93 32.80 3.10
5338 6012 6.205076 CCTCATCCATTAATGAAGCAGAAGAG 59.795 42.308 17.23 14.51 35.32 2.85
5339 6013 6.060136 CCTCATCCATTAATGAAGCAGAAGA 58.940 40.000 17.23 6.70 35.32 2.87
5340 6014 5.278364 GCCTCATCCATTAATGAAGCAGAAG 60.278 44.000 17.23 2.73 41.00 2.85
5341 6015 4.581824 GCCTCATCCATTAATGAAGCAGAA 59.418 41.667 17.23 0.00 41.00 3.02
5342 6016 4.139786 GCCTCATCCATTAATGAAGCAGA 58.860 43.478 17.23 5.48 41.00 4.26
5343 6017 3.887110 TGCCTCATCCATTAATGAAGCAG 59.113 43.478 17.23 7.14 44.28 4.24
5344 6018 3.900971 TGCCTCATCCATTAATGAAGCA 58.099 40.909 17.23 12.07 45.97 3.91
5345 6019 4.924305 TTGCCTCATCCATTAATGAAGC 57.076 40.909 17.23 9.90 41.47 3.86
5367 6041 6.410243 TTTTTCGAAACGAAGGCAATTTTT 57.590 29.167 10.79 0.00 46.43 1.94
5407 6081 5.063691 TCGTGTTTATATGCGGTCGATTTTT 59.936 36.000 0.00 0.00 0.00 1.94
5408 6082 4.567558 TCGTGTTTATATGCGGTCGATTTT 59.432 37.500 0.00 0.00 0.00 1.82
5409 6083 4.026310 GTCGTGTTTATATGCGGTCGATTT 60.026 41.667 0.00 0.00 0.00 2.17
5410 6084 3.488310 GTCGTGTTTATATGCGGTCGATT 59.512 43.478 0.00 0.00 0.00 3.34
5411 6085 3.047796 GTCGTGTTTATATGCGGTCGAT 58.952 45.455 0.00 0.00 0.00 3.59
5412 6086 2.453080 GTCGTGTTTATATGCGGTCGA 58.547 47.619 0.00 0.00 0.00 4.20
5413 6087 1.186408 CGTCGTGTTTATATGCGGTCG 59.814 52.381 0.00 0.00 0.00 4.79
5414 6088 2.453080 TCGTCGTGTTTATATGCGGTC 58.547 47.619 0.00 0.00 0.00 4.79
5431 6105 4.021894 ACAGAACAAATACAGAGCTCTCGT 60.022 41.667 14.96 17.30 34.09 4.18
5441 6115 5.942826 TCATGCACCATACAGAACAAATACA 59.057 36.000 0.00 0.00 0.00 2.29
5487 6161 4.747108 TGTGTTTGTTGTTGTTCTTGTTGG 59.253 37.500 0.00 0.00 0.00 3.77
5489 6163 6.306837 CGTATGTGTTTGTTGTTGTTCTTGTT 59.693 34.615 0.00 0.00 0.00 2.83
5495 6169 4.156190 TCCACGTATGTGTTTGTTGTTGTT 59.844 37.500 13.91 0.00 44.92 2.83
5496 6170 3.690139 TCCACGTATGTGTTTGTTGTTGT 59.310 39.130 13.91 0.00 44.92 3.32
5497 6171 4.280101 TCCACGTATGTGTTTGTTGTTG 57.720 40.909 13.91 0.00 44.92 3.33
5557 6231 3.763097 TGCAATATGGAAGCGTTTCTG 57.237 42.857 11.94 3.14 33.68 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.