Multiple sequence alignment - TraesCS1D01G111700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G111700 chr1D 100.000 6403 0 0 1 6403 107171158 107177560 0.000000e+00 11825.0
1 TraesCS1D01G111700 chr1D 92.035 113 6 3 2427 2537 407351189 407351078 8.600000e-34 156.0
2 TraesCS1D01G111700 chr1D 100.000 28 0 0 5939 5966 6539588 6539615 1.200000e-02 52.8
3 TraesCS1D01G111700 chr1A 96.752 3325 70 14 2519 5815 109575280 109578594 0.000000e+00 5507.0
4 TraesCS1D01G111700 chr1A 95.991 1821 48 10 630 2436 109573472 109575281 0.000000e+00 2935.0
5 TraesCS1D01G111700 chr1A 90.909 253 15 4 5972 6221 109579095 109579342 3.700000e-87 333.0
6 TraesCS1D01G111700 chr1A 92.000 175 12 2 5793 5965 109578772 109578946 1.780000e-60 244.0
7 TraesCS1D01G111700 chr1A 90.761 184 10 4 6227 6403 109579646 109579829 8.300000e-59 239.0
8 TraesCS1D01G111700 chr1A 96.000 75 3 0 5891 5965 109578953 109579027 8.720000e-24 122.0
9 TraesCS1D01G111700 chr1A 87.302 63 8 0 6087 6149 109579135 109579197 8.900000e-09 73.1
10 TraesCS1D01G111700 chr1B 93.477 1671 64 23 2629 4265 159635336 159633677 0.000000e+00 2440.0
11 TraesCS1D01G111700 chr1B 93.870 1354 33 8 476 1819 159638653 159637340 0.000000e+00 1995.0
12 TraesCS1D01G111700 chr1B 96.952 1181 33 3 4778 5956 159633019 159631840 0.000000e+00 1978.0
13 TraesCS1D01G111700 chr1B 95.208 480 18 3 1842 2317 159636104 159635626 0.000000e+00 754.0
14 TraesCS1D01G111700 chr1B 92.201 359 18 3 4424 4779 159633421 159633070 3.450000e-137 499.0
15 TraesCS1D01G111700 chr1B 89.802 353 29 4 6006 6351 159631740 159631388 4.550000e-121 446.0
16 TraesCS1D01G111700 chr1B 96.610 118 3 1 4248 4364 159633537 159633420 1.820000e-45 195.0
17 TraesCS1D01G111700 chr1B 97.087 103 3 0 2334 2436 159635575 159635473 2.370000e-39 174.0
18 TraesCS1D01G111700 chr1B 86.093 151 17 4 2729 2876 159635535 159635386 6.640000e-35 159.0
19 TraesCS1D01G111700 chr7D 97.196 107 3 0 6297 6403 377712817 377712923 1.420000e-41 182.0
20 TraesCS1D01G111700 chr7D 93.458 107 4 3 2427 2531 271541764 271541869 8.600000e-34 156.0
21 TraesCS1D01G111700 chr7D 92.188 64 3 2 4362 4425 631294571 631294510 8.840000e-14 89.8
22 TraesCS1D01G111700 chr4A 100.000 92 0 0 2429 2520 615436791 615436882 3.070000e-38 171.0
23 TraesCS1D01G111700 chr4A 100.000 90 0 0 2431 2520 4152060 4151971 3.970000e-37 167.0
24 TraesCS1D01G111700 chr4A 100.000 28 0 0 5939 5966 656856019 656855992 1.200000e-02 52.8
25 TraesCS1D01G111700 chr5B 98.936 94 1 0 2432 2525 612333513 612333420 1.100000e-37 169.0
26 TraesCS1D01G111700 chr2D 96.970 99 2 1 2424 2521 625194437 625194535 1.430000e-36 165.0
27 TraesCS1D01G111700 chr2D 91.379 116 6 4 2415 2528 489406998 489407111 8.600000e-34 156.0
28 TraesCS1D01G111700 chr2D 95.312 64 1 2 4363 4426 106264517 106264578 4.080000e-17 100.0
29 TraesCS1D01G111700 chr2D 93.750 64 3 1 4362 4425 326216614 326216552 1.900000e-15 95.3
30 TraesCS1D01G111700 chr2D 91.429 70 1 3 4360 4425 428662619 428662687 2.460000e-14 91.6
31 TraesCS1D01G111700 chr7A 95.146 103 4 1 2434 2535 223679796 223679694 1.850000e-35 161.0
32 TraesCS1D01G111700 chr2A 92.727 110 4 4 2413 2521 622029568 622029674 8.600000e-34 156.0
33 TraesCS1D01G111700 chr7B 97.015 67 1 1 4359 4425 53250573 53250638 1.890000e-20 111.0
34 TraesCS1D01G111700 chr7B 100.000 30 0 0 3687 3716 178392283 178392254 8.970000e-04 56.5
35 TraesCS1D01G111700 chr3D 94.030 67 3 1 4360 4425 81687853 81687919 4.080000e-17 100.0
36 TraesCS1D01G111700 chrUn 91.892 74 1 3 4355 4425 49143749 49143820 1.470000e-16 99.0
37 TraesCS1D01G111700 chrUn 87.179 78 2 5 4358 4429 184044638 184044713 1.480000e-11 82.4
38 TraesCS1D01G111700 chr6B 100.000 28 0 0 5939 5966 31895211 31895238 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G111700 chr1D 107171158 107177560 6402 False 11825.000000 11825 100.000000 1 6403 1 chr1D.!!$F2 6402
1 TraesCS1D01G111700 chr1A 109573472 109579829 6357 False 1350.442857 5507 92.816429 630 6403 7 chr1A.!!$F1 5773
2 TraesCS1D01G111700 chr1B 159631388 159638653 7265 True 960.000000 2440 93.477778 476 6351 9 chr1B.!!$R1 5875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.034756 TCACCAGTTCACCCGTCATG 59.965 55.000 0.00 0.00 0.00 3.07 F
81 82 0.034756 CACCAGTTCACCCGTCATGA 59.965 55.000 0.00 0.00 0.00 3.07 F
430 431 0.106894 GAAACGGATGGCTAGGAGGG 59.893 60.000 0.00 0.00 0.00 4.30 F
474 475 0.254178 CCAGGCAGGTACTTCAGCAT 59.746 55.000 0.00 0.00 34.60 3.79 F
1562 1606 0.526739 CGCAACGACCGGTATGATGA 60.527 55.000 7.34 0.00 0.00 2.92 F
2449 3746 1.076677 AGAACTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 37.15 3.53 F
3718 5068 1.849039 AGCTATCAAACAGGGCCTGAT 59.151 47.619 38.99 26.17 35.18 2.90 F
4427 5951 0.338814 ATGGGACGGAGGGAGTAAGT 59.661 55.000 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 1885 1.144565 CCGCAGATCGCTGTTCAGAG 61.145 60.000 3.84 0.46 44.17 3.35 R
1922 3180 1.656587 AGAAGGCCCAAAAATTCCCC 58.343 50.000 0.00 0.00 0.00 4.81 R
1945 3204 3.464907 CAGCAGATCACAGGATAACCAG 58.535 50.000 0.00 0.00 38.94 4.00 R
2435 3732 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85 R
2748 4094 0.176680 CCTGTCTCACCTAAGCGCAT 59.823 55.000 11.47 0.00 0.00 4.73 R
3752 5103 1.888512 ACACAGCAAGCAATTACAGGG 59.111 47.619 0.00 0.00 0.00 4.45 R
5285 6864 1.737735 CCTCTCGCACACATCGCAA 60.738 57.895 0.00 0.00 0.00 4.85 R
5969 7915 0.247814 CGATCCATGTTGCTTGTCGC 60.248 55.000 0.00 0.00 39.77 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.023551 CTGGATCTTGAGTTTGTTCGTTC 57.976 43.478 0.00 0.00 0.00 3.95
23 24 4.703897 TGGATCTTGAGTTTGTTCGTTCT 58.296 39.130 0.00 0.00 0.00 3.01
24 25 4.750098 TGGATCTTGAGTTTGTTCGTTCTC 59.250 41.667 0.00 0.00 0.00 2.87
25 26 4.991687 GGATCTTGAGTTTGTTCGTTCTCT 59.008 41.667 0.00 0.00 0.00 3.10
26 27 5.119434 GGATCTTGAGTTTGTTCGTTCTCTC 59.881 44.000 0.00 0.00 0.00 3.20
27 28 4.042398 TCTTGAGTTTGTTCGTTCTCTCG 58.958 43.478 0.00 0.00 0.00 4.04
28 29 3.431922 TGAGTTTGTTCGTTCTCTCGT 57.568 42.857 0.00 0.00 0.00 4.18
29 30 4.556942 TGAGTTTGTTCGTTCTCTCGTA 57.443 40.909 0.00 0.00 0.00 3.43
30 31 4.534168 TGAGTTTGTTCGTTCTCTCGTAG 58.466 43.478 0.00 0.00 0.00 3.51
31 32 3.898529 AGTTTGTTCGTTCTCTCGTAGG 58.101 45.455 0.00 0.00 0.00 3.18
32 33 2.985139 GTTTGTTCGTTCTCTCGTAGGG 59.015 50.000 0.00 0.00 0.00 3.53
33 34 2.189594 TGTTCGTTCTCTCGTAGGGA 57.810 50.000 0.00 0.00 0.00 4.20
34 35 2.507484 TGTTCGTTCTCTCGTAGGGAA 58.493 47.619 0.00 0.00 0.00 3.97
35 36 2.486982 TGTTCGTTCTCTCGTAGGGAAG 59.513 50.000 0.00 0.00 0.00 3.46
36 37 2.486472 TCGTTCTCTCGTAGGGAAGT 57.514 50.000 0.00 0.00 0.00 3.01
37 38 2.787994 TCGTTCTCTCGTAGGGAAGTT 58.212 47.619 0.00 0.00 0.00 2.66
38 39 3.152341 TCGTTCTCTCGTAGGGAAGTTT 58.848 45.455 0.00 0.00 0.00 2.66
39 40 3.571401 TCGTTCTCTCGTAGGGAAGTTTT 59.429 43.478 0.00 0.00 0.00 2.43
40 41 4.038402 TCGTTCTCTCGTAGGGAAGTTTTT 59.962 41.667 0.00 0.00 0.00 1.94
64 65 9.528018 TTTTGTTTTCCTTACAATGAATCTCAC 57.472 29.630 0.00 0.00 35.60 3.51
65 66 7.214467 TGTTTTCCTTACAATGAATCTCACC 57.786 36.000 0.00 0.00 0.00 4.02
66 67 6.775142 TGTTTTCCTTACAATGAATCTCACCA 59.225 34.615 0.00 0.00 0.00 4.17
67 68 7.040478 TGTTTTCCTTACAATGAATCTCACCAG 60.040 37.037 0.00 0.00 0.00 4.00
68 69 5.762179 TCCTTACAATGAATCTCACCAGT 57.238 39.130 0.00 0.00 0.00 4.00
69 70 6.126863 TCCTTACAATGAATCTCACCAGTT 57.873 37.500 0.00 0.00 0.00 3.16
70 71 6.173339 TCCTTACAATGAATCTCACCAGTTC 58.827 40.000 0.00 0.00 0.00 3.01
71 72 5.939883 CCTTACAATGAATCTCACCAGTTCA 59.060 40.000 0.00 0.00 36.42 3.18
72 73 6.128172 CCTTACAATGAATCTCACCAGTTCAC 60.128 42.308 0.00 0.00 34.98 3.18
73 74 4.074970 ACAATGAATCTCACCAGTTCACC 58.925 43.478 0.00 0.00 34.98 4.02
74 75 2.859165 TGAATCTCACCAGTTCACCC 57.141 50.000 0.00 0.00 0.00 4.61
75 76 1.001974 TGAATCTCACCAGTTCACCCG 59.998 52.381 0.00 0.00 0.00 5.28
76 77 1.002087 GAATCTCACCAGTTCACCCGT 59.998 52.381 0.00 0.00 0.00 5.28
77 78 0.608640 ATCTCACCAGTTCACCCGTC 59.391 55.000 0.00 0.00 0.00 4.79
78 79 0.757561 TCTCACCAGTTCACCCGTCA 60.758 55.000 0.00 0.00 0.00 4.35
79 80 0.321671 CTCACCAGTTCACCCGTCAT 59.678 55.000 0.00 0.00 0.00 3.06
80 81 0.034756 TCACCAGTTCACCCGTCATG 59.965 55.000 0.00 0.00 0.00 3.07
81 82 0.034756 CACCAGTTCACCCGTCATGA 59.965 55.000 0.00 0.00 0.00 3.07
82 83 0.762418 ACCAGTTCACCCGTCATGAA 59.238 50.000 0.00 0.00 33.68 2.57
83 84 1.142060 ACCAGTTCACCCGTCATGAAA 59.858 47.619 0.00 0.00 37.80 2.69
84 85 1.806542 CCAGTTCACCCGTCATGAAAG 59.193 52.381 0.00 0.00 37.80 2.62
85 86 1.197721 CAGTTCACCCGTCATGAAAGC 59.802 52.381 0.00 0.00 37.80 3.51
86 87 0.521735 GTTCACCCGTCATGAAAGCC 59.478 55.000 0.00 0.00 37.80 4.35
87 88 0.109532 TTCACCCGTCATGAAAGCCA 59.890 50.000 0.00 0.00 33.16 4.75
88 89 0.321564 TCACCCGTCATGAAAGCCAG 60.322 55.000 0.00 0.00 0.00 4.85
89 90 1.675641 ACCCGTCATGAAAGCCAGC 60.676 57.895 0.00 0.00 0.00 4.85
90 91 1.377725 CCCGTCATGAAAGCCAGCT 60.378 57.895 0.00 0.00 0.00 4.24
91 92 1.372087 CCCGTCATGAAAGCCAGCTC 61.372 60.000 0.00 0.00 0.00 4.09
92 93 0.392193 CCGTCATGAAAGCCAGCTCT 60.392 55.000 0.00 0.00 0.00 4.09
93 94 0.725686 CGTCATGAAAGCCAGCTCTG 59.274 55.000 0.00 0.00 0.00 3.35
116 117 3.591835 CGCAACACACACCCCCAC 61.592 66.667 0.00 0.00 0.00 4.61
117 118 3.591835 GCAACACACACCCCCACG 61.592 66.667 0.00 0.00 0.00 4.94
118 119 2.190843 CAACACACACCCCCACGA 59.809 61.111 0.00 0.00 0.00 4.35
119 120 1.891919 CAACACACACCCCCACGAG 60.892 63.158 0.00 0.00 0.00 4.18
120 121 3.767630 AACACACACCCCCACGAGC 62.768 63.158 0.00 0.00 0.00 5.03
123 124 4.742201 CACACCCCCACGAGCGAG 62.742 72.222 0.00 0.00 0.00 5.03
151 152 2.190578 CGAAGGGACTCATGGCCC 59.809 66.667 0.00 10.21 45.04 5.80
156 157 3.161450 GGACTCATGGCCCGCCTA 61.161 66.667 7.35 0.00 36.94 3.93
157 158 2.520536 GGACTCATGGCCCGCCTAT 61.521 63.158 7.35 0.00 36.94 2.57
158 159 1.004440 GACTCATGGCCCGCCTATC 60.004 63.158 7.35 0.00 36.94 2.08
159 160 2.047844 CTCATGGCCCGCCTATCG 60.048 66.667 7.35 0.00 36.94 2.92
160 161 2.842462 TCATGGCCCGCCTATCGT 60.842 61.111 7.35 0.00 36.94 3.73
161 162 2.666190 CATGGCCCGCCTATCGTG 60.666 66.667 7.35 0.00 36.94 4.35
162 163 2.842462 ATGGCCCGCCTATCGTGA 60.842 61.111 7.35 0.00 36.94 4.35
163 164 3.165160 ATGGCCCGCCTATCGTGAC 62.165 63.158 7.35 0.00 36.94 3.67
164 165 3.537874 GGCCCGCCTATCGTGACT 61.538 66.667 0.00 0.00 36.19 3.41
165 166 2.198287 GGCCCGCCTATCGTGACTA 61.198 63.158 0.00 0.00 36.19 2.59
166 167 1.286260 GCCCGCCTATCGTGACTAG 59.714 63.158 0.00 0.00 36.19 2.57
167 168 1.170919 GCCCGCCTATCGTGACTAGA 61.171 60.000 0.00 0.00 36.19 2.43
168 169 0.592148 CCCGCCTATCGTGACTAGAC 59.408 60.000 0.00 0.00 36.19 2.59
169 170 0.592148 CCGCCTATCGTGACTAGACC 59.408 60.000 0.00 0.00 36.19 3.85
170 171 1.306148 CGCCTATCGTGACTAGACCA 58.694 55.000 0.00 0.00 0.00 4.02
171 172 1.264557 CGCCTATCGTGACTAGACCAG 59.735 57.143 0.00 0.00 0.00 4.00
172 173 1.001158 GCCTATCGTGACTAGACCAGC 60.001 57.143 0.00 0.00 0.00 4.85
173 174 1.609555 CCTATCGTGACTAGACCAGCC 59.390 57.143 0.00 0.00 0.00 4.85
174 175 1.609555 CTATCGTGACTAGACCAGCCC 59.390 57.143 0.00 0.00 0.00 5.19
175 176 1.384989 ATCGTGACTAGACCAGCCCG 61.385 60.000 0.00 0.00 0.00 6.13
176 177 2.044555 CGTGACTAGACCAGCCCGA 61.045 63.158 0.00 0.00 0.00 5.14
177 178 1.511768 GTGACTAGACCAGCCCGAC 59.488 63.158 0.00 0.00 0.00 4.79
178 179 2.044555 TGACTAGACCAGCCCGACG 61.045 63.158 0.00 0.00 0.00 5.12
179 180 3.412879 GACTAGACCAGCCCGACGC 62.413 68.421 0.00 0.00 37.98 5.19
180 181 4.554363 CTAGACCAGCCCGACGCG 62.554 72.222 3.53 3.53 44.76 6.01
187 188 3.454573 AGCCCGACGCGGTTCATA 61.455 61.111 12.47 0.00 46.80 2.15
188 189 3.259751 GCCCGACGCGGTTCATAC 61.260 66.667 12.47 0.00 46.80 2.39
189 190 2.182284 CCCGACGCGGTTCATACA 59.818 61.111 12.47 0.00 46.80 2.29
190 191 2.162754 CCCGACGCGGTTCATACAC 61.163 63.158 12.47 0.00 46.80 2.90
191 192 1.444724 CCGACGCGGTTCATACACA 60.445 57.895 12.47 0.00 42.73 3.72
192 193 1.680105 CCGACGCGGTTCATACACAC 61.680 60.000 12.47 0.00 42.73 3.82
193 194 1.680105 CGACGCGGTTCATACACACC 61.680 60.000 12.47 0.00 0.00 4.16
199 200 1.722011 GGTTCATACACACCGACAGG 58.278 55.000 0.00 0.00 45.13 4.00
211 212 3.948719 GACAGGTGGGTTCGGCCA 61.949 66.667 2.24 0.00 39.65 5.36
212 213 3.485346 GACAGGTGGGTTCGGCCAA 62.485 63.158 2.24 0.00 39.65 4.52
213 214 2.672996 CAGGTGGGTTCGGCCAAG 60.673 66.667 2.24 0.00 39.65 3.61
214 215 4.660938 AGGTGGGTTCGGCCAAGC 62.661 66.667 2.24 6.05 38.98 4.01
234 235 3.645975 CCACACGTGGGACAACGC 61.646 66.667 22.05 0.00 46.81 4.84
235 236 2.892914 CACACGTGGGACAACGCA 60.893 61.111 21.57 0.00 44.16 5.24
241 242 4.454948 TGGGACAACGCACAAGAG 57.545 55.556 0.00 0.00 34.12 2.85
242 243 1.227823 TGGGACAACGCACAAGAGG 60.228 57.895 0.00 0.00 34.12 3.69
243 244 1.966451 GGGACAACGCACAAGAGGG 60.966 63.158 0.00 0.00 0.00 4.30
244 245 2.617274 GGACAACGCACAAGAGGGC 61.617 63.158 0.00 0.00 0.00 5.19
250 251 3.567797 GCACAAGAGGGCGATCGC 61.568 66.667 31.52 31.52 41.06 4.58
251 252 3.257561 CACAAGAGGGCGATCGCG 61.258 66.667 31.76 19.83 43.06 5.87
252 253 4.514577 ACAAGAGGGCGATCGCGG 62.515 66.667 31.76 18.62 43.06 6.46
278 279 4.451150 GACGCCACCGCATGAGGA 62.451 66.667 23.45 0.00 38.22 3.71
279 280 3.740128 GACGCCACCGCATGAGGAT 62.740 63.158 23.45 3.55 38.22 3.24
280 281 3.274586 CGCCACCGCATGAGGATG 61.275 66.667 23.45 15.39 34.73 3.51
281 282 2.903855 GCCACCGCATGAGGATGG 60.904 66.667 23.45 23.39 34.73 3.51
282 283 2.903855 CCACCGCATGAGGATGGC 60.904 66.667 23.45 0.00 34.73 4.40
283 284 2.903855 CACCGCATGAGGATGGCC 60.904 66.667 23.45 0.00 34.73 5.36
284 285 4.195334 ACCGCATGAGGATGGCCC 62.195 66.667 23.45 0.00 34.73 5.80
285 286 4.962836 CCGCATGAGGATGGCCCC 62.963 72.222 10.41 0.00 34.66 5.80
287 288 4.962836 GCATGAGGATGGCCCCGG 62.963 72.222 0.00 0.00 34.66 5.73
288 289 4.275508 CATGAGGATGGCCCCGGG 62.276 72.222 15.80 15.80 34.66 5.73
289 290 4.514594 ATGAGGATGGCCCCGGGA 62.515 66.667 26.32 0.92 34.66 5.14
290 291 3.818105 ATGAGGATGGCCCCGGGAT 62.818 63.158 26.32 7.68 34.66 3.85
291 292 3.641454 GAGGATGGCCCCGGGATC 61.641 72.222 26.32 17.50 34.66 3.36
292 293 4.514594 AGGATGGCCCCGGGATCA 62.515 66.667 26.32 20.21 34.66 2.92
293 294 4.271016 GGATGGCCCCGGGATCAC 62.271 72.222 26.32 9.54 0.00 3.06
294 295 3.171388 GATGGCCCCGGGATCACT 61.171 66.667 26.32 9.54 0.00 3.41
295 296 3.171388 ATGGCCCCGGGATCACTC 61.171 66.667 26.32 4.87 0.00 3.51
304 305 4.222847 GGATCACTCCCGCGGTCC 62.223 72.222 26.12 19.33 35.28 4.46
305 306 3.458163 GATCACTCCCGCGGTCCA 61.458 66.667 26.12 6.44 0.00 4.02
306 307 2.764128 ATCACTCCCGCGGTCCAT 60.764 61.111 26.12 5.41 0.00 3.41
307 308 2.701163 GATCACTCCCGCGGTCCATC 62.701 65.000 26.12 13.51 0.00 3.51
308 309 4.530857 CACTCCCGCGGTCCATCC 62.531 72.222 26.12 0.00 0.00 3.51
318 319 3.080647 GGTCCATCCGTCATGAACC 57.919 57.895 0.00 0.00 33.80 3.62
319 320 0.251916 GGTCCATCCGTCATGAACCA 59.748 55.000 0.00 0.00 33.80 3.67
320 321 1.134098 GGTCCATCCGTCATGAACCAT 60.134 52.381 0.00 0.00 33.80 3.55
321 322 1.942657 GTCCATCCGTCATGAACCATG 59.057 52.381 0.00 0.00 42.60 3.66
322 323 1.134128 TCCATCCGTCATGAACCATGG 60.134 52.381 11.19 11.19 41.66 3.66
323 324 1.134128 CCATCCGTCATGAACCATGGA 60.134 52.381 21.47 11.52 41.66 3.41
324 325 2.216046 CATCCGTCATGAACCATGGAG 58.784 52.381 21.47 2.63 41.66 3.86
325 326 0.541392 TCCGTCATGAACCATGGAGG 59.459 55.000 21.47 8.15 41.66 4.30
334 335 4.828296 CCATGGAGGTGGGCTGCC 62.828 72.222 11.05 11.05 35.55 4.85
335 336 4.828296 CATGGAGGTGGGCTGCCC 62.828 72.222 30.97 30.97 45.71 5.36
349 350 4.593864 GCCCGAGTCCGAGCCATC 62.594 72.222 0.00 0.00 38.22 3.51
350 351 3.917760 CCCGAGTCCGAGCCATCC 61.918 72.222 0.00 0.00 38.22 3.51
351 352 4.271816 CCGAGTCCGAGCCATCCG 62.272 72.222 0.00 0.00 38.22 4.18
353 354 3.917760 GAGTCCGAGCCATCCGGG 61.918 72.222 0.00 0.00 46.47 5.73
371 372 4.069232 CAGAACGGGCGGCTCAGA 62.069 66.667 9.56 0.00 0.00 3.27
372 373 3.764466 AGAACGGGCGGCTCAGAG 61.764 66.667 9.56 0.00 0.00 3.35
373 374 3.760035 GAACGGGCGGCTCAGAGA 61.760 66.667 9.56 0.00 0.00 3.10
374 375 3.708220 GAACGGGCGGCTCAGAGAG 62.708 68.421 9.56 0.00 0.00 3.20
408 409 2.825836 CCTCCACGGCAAGCCATC 60.826 66.667 12.19 0.00 35.37 3.51
409 410 3.197790 CTCCACGGCAAGCCATCG 61.198 66.667 12.19 0.00 35.37 3.84
410 411 3.958147 CTCCACGGCAAGCCATCGT 62.958 63.158 12.19 0.28 37.64 3.73
413 414 2.031919 ACGGCAAGCCATCGTGAA 59.968 55.556 12.19 0.00 35.70 3.18
414 415 1.599518 ACGGCAAGCCATCGTGAAA 60.600 52.632 12.19 0.00 35.70 2.69
415 416 1.154225 CGGCAAGCCATCGTGAAAC 60.154 57.895 12.19 0.00 35.37 2.78
428 429 1.941325 GTGAAACGGATGGCTAGGAG 58.059 55.000 0.00 0.00 0.00 3.69
429 430 0.830648 TGAAACGGATGGCTAGGAGG 59.169 55.000 0.00 0.00 0.00 4.30
430 431 0.106894 GAAACGGATGGCTAGGAGGG 59.893 60.000 0.00 0.00 0.00 4.30
431 432 1.984288 AAACGGATGGCTAGGAGGGC 61.984 60.000 0.00 0.00 0.00 5.19
432 433 2.844362 CGGATGGCTAGGAGGGCA 60.844 66.667 0.00 0.00 45.45 5.36
433 434 2.832498 GGATGGCTAGGAGGGCAC 59.168 66.667 0.00 0.00 44.25 5.01
434 435 1.768077 GGATGGCTAGGAGGGCACT 60.768 63.158 0.00 0.00 44.25 4.40
435 436 1.751563 GATGGCTAGGAGGGCACTC 59.248 63.158 7.70 7.70 44.25 3.51
436 437 0.762461 GATGGCTAGGAGGGCACTCT 60.762 60.000 17.22 4.49 44.25 3.24
437 438 0.762461 ATGGCTAGGAGGGCACTCTC 60.762 60.000 17.22 6.11 44.25 3.20
438 439 2.494530 GGCTAGGAGGGCACTCTCG 61.495 68.421 17.22 5.64 43.46 4.04
439 440 3.124686 CTAGGAGGGCACTCTCGC 58.875 66.667 17.22 0.00 43.46 5.03
447 448 4.200283 GCACTCTCGCCCTCGGAG 62.200 72.222 0.00 0.00 38.27 4.63
448 449 3.522731 CACTCTCGCCCTCGGAGG 61.523 72.222 17.41 17.41 37.34 4.30
449 450 4.049817 ACTCTCGCCCTCGGAGGT 62.050 66.667 22.07 0.00 37.34 3.85
450 451 3.213402 CTCTCGCCCTCGGAGGTC 61.213 72.222 22.07 9.31 31.93 3.85
451 452 4.816984 TCTCGCCCTCGGAGGTCC 62.817 72.222 22.07 11.81 31.93 4.46
454 455 4.517934 CGCCCTCGGAGGTCCCTA 62.518 72.222 22.07 0.00 31.93 3.53
455 456 2.838693 GCCCTCGGAGGTCCCTAC 60.839 72.222 22.07 1.59 31.93 3.18
472 473 4.625800 CCAGGCAGGTACTTCAGC 57.374 61.111 0.00 0.00 34.60 4.26
473 474 1.679311 CCAGGCAGGTACTTCAGCA 59.321 57.895 0.00 0.00 34.60 4.41
474 475 0.254178 CCAGGCAGGTACTTCAGCAT 59.746 55.000 0.00 0.00 34.60 3.79
475 476 1.661341 CAGGCAGGTACTTCAGCATC 58.339 55.000 0.00 0.00 34.60 3.91
476 477 0.543749 AGGCAGGTACTTCAGCATCC 59.456 55.000 0.00 0.00 34.60 3.51
477 478 0.543749 GGCAGGTACTTCAGCATCCT 59.456 55.000 0.00 0.00 34.60 3.24
478 479 1.474143 GGCAGGTACTTCAGCATCCTC 60.474 57.143 0.00 0.00 34.60 3.71
479 480 1.484240 GCAGGTACTTCAGCATCCTCT 59.516 52.381 0.00 0.00 34.60 3.69
480 481 2.695666 GCAGGTACTTCAGCATCCTCTA 59.304 50.000 0.00 0.00 34.60 2.43
488 489 7.666388 GGTACTTCAGCATCCTCTATAGAAGTA 59.334 40.741 3.57 0.00 42.69 2.24
543 544 8.744568 AGAATTCCTGAAGATATGAACTTTCC 57.255 34.615 0.65 0.00 0.00 3.13
584 585 4.472286 GGTGATGTTTTATGTTGGTGTCG 58.528 43.478 0.00 0.00 0.00 4.35
602 603 1.779025 CGCCCATTCGAATGAGCCTG 61.779 60.000 34.21 19.54 36.88 4.85
605 606 0.749091 CCATTCGAATGAGCCTGCCA 60.749 55.000 34.21 0.00 38.70 4.92
635 636 4.288626 TCTTTATTTGTGCCAGGGTACTCT 59.711 41.667 8.04 0.00 0.00 3.24
645 646 3.577415 GCCAGGGTACTCTTATACGGAAT 59.423 47.826 0.00 0.00 0.00 3.01
659 660 1.489230 ACGGAATGTCAACCCCCTATC 59.511 52.381 0.00 0.00 0.00 2.08
743 759 2.754472 GAGGGTTCATGGTTTGCAAAC 58.246 47.619 30.09 30.09 38.17 2.93
763 806 4.632538 ACTTGACCTTTTCGTTTCCTTG 57.367 40.909 0.00 0.00 0.00 3.61
764 807 4.266714 ACTTGACCTTTTCGTTTCCTTGA 58.733 39.130 0.00 0.00 0.00 3.02
765 808 4.095932 ACTTGACCTTTTCGTTTCCTTGAC 59.904 41.667 0.00 0.00 0.00 3.18
766 809 2.610374 TGACCTTTTCGTTTCCTTGACG 59.390 45.455 0.00 0.00 41.62 4.35
767 810 1.944709 ACCTTTTCGTTTCCTTGACGG 59.055 47.619 0.00 0.00 40.70 4.79
768 811 1.265905 CCTTTTCGTTTCCTTGACGGG 59.734 52.381 0.00 0.00 40.70 5.28
769 812 2.215196 CTTTTCGTTTCCTTGACGGGA 58.785 47.619 0.00 0.00 40.70 5.14
770 813 1.873698 TTTCGTTTCCTTGACGGGAG 58.126 50.000 0.00 0.00 40.70 4.30
771 814 0.601841 TTCGTTTCCTTGACGGGAGC 60.602 55.000 0.00 0.00 40.70 4.70
772 815 2.380410 CGTTTCCTTGACGGGAGCG 61.380 63.158 0.00 0.00 36.66 5.03
773 816 2.033194 GTTTCCTTGACGGGAGCGG 61.033 63.158 0.00 0.00 36.66 5.52
774 817 2.211410 TTTCCTTGACGGGAGCGGA 61.211 57.895 0.00 0.00 36.66 5.54
775 818 2.167398 TTTCCTTGACGGGAGCGGAG 62.167 60.000 0.00 0.00 36.66 4.63
842 885 5.451908 CAGACGCAAAAGAGCAAATTCTTA 58.548 37.500 0.00 0.00 36.42 2.10
894 937 1.138266 CACCCCAACCCGTCTATACTG 59.862 57.143 0.00 0.00 0.00 2.74
909 952 3.710209 ATACTGCTCTTCACTTGCCTT 57.290 42.857 0.00 0.00 0.00 4.35
956 999 4.101077 CTCCTCCCAGCCTCCCCT 62.101 72.222 0.00 0.00 0.00 4.79
1562 1606 0.526739 CGCAACGACCGGTATGATGA 60.527 55.000 7.34 0.00 0.00 2.92
1563 1607 1.865865 GCAACGACCGGTATGATGAT 58.134 50.000 7.34 0.00 0.00 2.45
1564 1608 2.210116 GCAACGACCGGTATGATGATT 58.790 47.619 7.34 0.00 0.00 2.57
1726 1771 5.554437 TGTTGGTGTCCTGTATAGACAAA 57.446 39.130 0.00 0.00 45.37 2.83
1840 1885 2.734606 TGTGAGCTTGTTATGTACGTGC 59.265 45.455 0.00 0.00 0.00 5.34
1945 3204 4.564821 GGGGAATTTTTGGGCCTTCTTTAC 60.565 45.833 4.53 0.00 0.00 2.01
2435 3732 2.755655 GCACTAGGCAGAGACAGAACTA 59.244 50.000 0.00 0.00 43.97 2.24
2436 3733 3.428316 GCACTAGGCAGAGACAGAACTAC 60.428 52.174 0.00 0.00 43.97 2.73
2437 3734 4.013728 CACTAGGCAGAGACAGAACTACT 58.986 47.826 0.00 0.00 0.00 2.57
2438 3735 4.095782 CACTAGGCAGAGACAGAACTACTC 59.904 50.000 0.00 0.00 0.00 2.59
2439 3736 2.452505 AGGCAGAGACAGAACTACTCC 58.547 52.381 0.00 0.00 0.00 3.85
2440 3737 1.478916 GGCAGAGACAGAACTACTCCC 59.521 57.143 0.00 0.00 0.00 4.30
2441 3738 2.452505 GCAGAGACAGAACTACTCCCT 58.547 52.381 0.00 0.00 0.00 4.20
2442 3739 2.425668 GCAGAGACAGAACTACTCCCTC 59.574 54.545 0.00 0.00 0.00 4.30
2443 3740 3.020984 CAGAGACAGAACTACTCCCTCC 58.979 54.545 0.00 0.00 0.00 4.30
2444 3741 2.018515 GAGACAGAACTACTCCCTCCG 58.981 57.143 0.00 0.00 0.00 4.63
2445 3742 1.355043 AGACAGAACTACTCCCTCCGT 59.645 52.381 0.00 0.00 0.00 4.69
2446 3743 2.169330 GACAGAACTACTCCCTCCGTT 58.831 52.381 0.00 0.00 0.00 4.44
2447 3744 2.164017 GACAGAACTACTCCCTCCGTTC 59.836 54.545 0.00 0.00 36.81 3.95
2448 3745 1.477295 CAGAACTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 37.15 3.62
2449 3746 1.076677 AGAACTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 37.15 3.53
2450 3747 1.897802 GAACTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 31.89 3.53
2451 3748 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2452 3749 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2453 3750 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2454 3751 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2455 3752 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2456 3753 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2457 3754 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2458 3755 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2459 3756 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2460 3757 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2461 3758 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2462 3759 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2463 3760 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2464 3761 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2465 3762 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2466 3763 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2467 3764 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2468 3765 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2469 3766 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2470 3767 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2471 3768 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2472 3769 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2473 3770 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2474 3771 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2475 3772 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2476 3773 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2477 3774 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
2478 3775 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
2480 3777 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
2481 3778 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
2482 3779 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
2483 3780 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
2506 3803 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2507 3804 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2508 3805 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2509 3806 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2510 3807 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2511 3808 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2512 3809 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2513 3810 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2514 3811 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2515 3812 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2516 3813 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2517 3814 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2518 3815 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2587 3893 7.549134 ACATCTGAAGACGCATCTAAATACAAA 59.451 33.333 0.00 0.00 33.57 2.83
2628 3935 6.245408 TGAAGCCAAACATAGGAAGTTATGT 58.755 36.000 0.00 0.00 44.08 2.29
2731 4066 4.744570 CATGTGCTTGAAATCAGAATGCT 58.255 39.130 0.00 0.00 34.76 3.79
2732 4067 5.677852 GCATGTGCTTGAAATCAGAATGCTA 60.678 40.000 0.00 0.00 38.21 3.49
2748 4094 1.900351 CTAGTGCTAGTGCCAGGCA 59.100 57.895 11.22 11.22 38.71 4.75
2852 4198 8.691661 AGTATGGTGTTAACTTTTGAAGATGT 57.308 30.769 7.22 0.00 0.00 3.06
2853 4199 8.567948 AGTATGGTGTTAACTTTTGAAGATGTG 58.432 33.333 7.22 0.00 0.00 3.21
3318 4664 8.394121 GTTCAATCTTAAATCTGGAGTCATGTC 58.606 37.037 0.00 0.00 0.00 3.06
3337 4683 9.973450 GTCATGTCTTATGAAAGCTTCTAGATA 57.027 33.333 0.00 0.00 32.36 1.98
3718 5068 1.849039 AGCTATCAAACAGGGCCTGAT 59.151 47.619 38.99 26.17 35.18 2.90
3752 5103 8.994170 AGTTCTTTATTCAGTTGCTTCTAGTTC 58.006 33.333 0.00 0.00 0.00 3.01
3768 5119 3.160679 AGTTCCCTGTAATTGCTTGCT 57.839 42.857 0.00 0.00 0.00 3.91
3769 5120 2.821969 AGTTCCCTGTAATTGCTTGCTG 59.178 45.455 0.00 0.00 0.00 4.41
3833 5184 2.965572 TGCATAATGCCTGCTTTTCC 57.034 45.000 0.00 0.00 44.23 3.13
4057 5412 8.486210 TCTTAAGAAAGTATAGTGTGGCATCAT 58.514 33.333 1.68 0.00 34.13 2.45
4295 5818 5.769484 AAGGATGCTATGCAAGAAATCTG 57.231 39.130 0.00 0.00 43.62 2.90
4345 5869 6.919721 TGTAGAACTGGTTGAATATTTTGGC 58.080 36.000 0.00 0.00 0.00 4.52
4391 5915 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
4426 5950 2.376695 TATGGGACGGAGGGAGTAAG 57.623 55.000 0.00 0.00 0.00 2.34
4427 5951 0.338814 ATGGGACGGAGGGAGTAAGT 59.661 55.000 0.00 0.00 0.00 2.24
4428 5952 1.002069 TGGGACGGAGGGAGTAAGTA 58.998 55.000 0.00 0.00 0.00 2.24
4429 5953 1.358787 TGGGACGGAGGGAGTAAGTAA 59.641 52.381 0.00 0.00 0.00 2.24
4485 6009 0.744874 TTCCTACAGGGAGCGAATCG 59.255 55.000 0.00 0.00 46.01 3.34
4487 6011 1.134007 TCCTACAGGGAGCGAATCGTA 60.134 52.381 4.07 0.00 39.58 3.43
4488 6012 1.887198 CCTACAGGGAGCGAATCGTAT 59.113 52.381 4.07 0.00 37.23 3.06
4490 6014 2.981859 ACAGGGAGCGAATCGTATTT 57.018 45.000 4.07 0.00 0.00 1.40
4491 6015 2.822764 ACAGGGAGCGAATCGTATTTC 58.177 47.619 4.07 0.00 0.00 2.17
4558 6084 6.655078 AATTGAGCACTTGGTAGTTTTCAT 57.345 33.333 0.00 0.00 30.26 2.57
4627 6153 7.682865 CAGAGTTTTATCTAAGCAACGTTTACG 59.317 37.037 0.00 0.00 46.33 3.18
4758 6284 3.715315 GGGCCTAGTTGAACTATAGGGTT 59.285 47.826 14.28 0.00 37.20 4.11
5285 6864 1.408822 GCCGAGGAATTCTGGATTGGT 60.409 52.381 13.72 0.00 0.00 3.67
5593 7173 3.837731 TGTGAGGGAAGATGACACACATA 59.162 43.478 0.00 0.00 39.56 2.29
5718 7298 5.588648 GGAAGTTCATGTTCCAATAATCCGA 59.411 40.000 5.01 0.00 42.79 4.55
5859 7641 2.032178 GGTTTACCGATGCTGCATTCTC 59.968 50.000 17.36 4.02 0.00 2.87
5865 7647 1.760192 GATGCTGCATTCTCCAAGGT 58.240 50.000 17.36 0.00 0.00 3.50
5977 7923 2.238245 CTCAAATGTGAGCGACAAGC 57.762 50.000 0.00 0.00 44.74 4.01
6050 7999 3.673902 TGTCAATCGCTCATCCTTTCAA 58.326 40.909 0.00 0.00 0.00 2.69
6085 8034 4.202131 CCTTTAGTATCTCCGTCTTCCCAC 60.202 50.000 0.00 0.00 0.00 4.61
6102 8051 8.034215 GTCTTCCCACTATAATCTCATCATCTG 58.966 40.741 0.00 0.00 0.00 2.90
6138 8087 1.002888 CTTTCAGCTCTTCTCTGGCCA 59.997 52.381 4.71 4.71 32.63 5.36
6145 8094 3.386402 AGCTCTTCTCTGGCCATTAGTAC 59.614 47.826 5.51 0.00 0.00 2.73
6203 8152 5.392380 GCATCCTTAGACCAAATCAGTTGTG 60.392 44.000 0.00 0.00 35.23 3.33
6206 8155 4.320494 CCTTAGACCAAATCAGTTGTGCAC 60.320 45.833 10.75 10.75 35.23 4.57
6221 8170 5.528043 TTGTGCACTGGTTCACAAATTAT 57.472 34.783 19.41 0.00 46.40 1.28
6228 8177 9.019656 TGCACTGGTTCACAAATTATTAGTTAT 57.980 29.630 0.00 0.00 0.00 1.89
6310 8564 7.095732 GCTAGTGCCTCTAACCGTTAAATAATC 60.096 40.741 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.703897 AGAACGAACAAACTCAAGATCCA 58.296 39.130 0.00 0.00 0.00 3.41
2 3 4.991687 AGAGAACGAACAAACTCAAGATCC 59.008 41.667 0.00 0.00 32.59 3.36
3 4 5.164138 CGAGAGAACGAACAAACTCAAGATC 60.164 44.000 0.00 0.00 35.09 2.75
5 6 4.042398 CGAGAGAACGAACAAACTCAAGA 58.958 43.478 0.00 0.00 35.09 3.02
6 7 3.797256 ACGAGAGAACGAACAAACTCAAG 59.203 43.478 0.00 0.00 37.03 3.02
7 8 3.777478 ACGAGAGAACGAACAAACTCAA 58.223 40.909 0.00 0.00 37.03 3.02
8 9 3.431922 ACGAGAGAACGAACAAACTCA 57.568 42.857 0.00 0.00 37.03 3.41
9 10 3.913163 CCTACGAGAGAACGAACAAACTC 59.087 47.826 0.00 0.00 37.03 3.01
10 11 3.305199 CCCTACGAGAGAACGAACAAACT 60.305 47.826 0.00 0.00 37.03 2.66
11 12 2.985139 CCCTACGAGAGAACGAACAAAC 59.015 50.000 0.00 0.00 37.03 2.93
12 13 2.886523 TCCCTACGAGAGAACGAACAAA 59.113 45.455 0.00 0.00 37.03 2.83
13 14 2.507484 TCCCTACGAGAGAACGAACAA 58.493 47.619 0.00 0.00 37.03 2.83
14 15 2.189594 TCCCTACGAGAGAACGAACA 57.810 50.000 0.00 0.00 37.03 3.18
15 16 2.487372 ACTTCCCTACGAGAGAACGAAC 59.513 50.000 0.00 0.00 37.03 3.95
16 17 2.787994 ACTTCCCTACGAGAGAACGAA 58.212 47.619 0.00 0.00 37.03 3.85
17 18 2.486472 ACTTCCCTACGAGAGAACGA 57.514 50.000 0.00 0.00 37.03 3.85
18 19 3.572604 AAACTTCCCTACGAGAGAACG 57.427 47.619 0.00 0.00 39.31 3.95
38 39 9.528018 GTGAGATTCATTGTAAGGAAAACAAAA 57.472 29.630 0.00 0.00 40.05 2.44
39 40 8.141268 GGTGAGATTCATTGTAAGGAAAACAAA 58.859 33.333 0.00 0.00 40.05 2.83
40 41 7.286546 TGGTGAGATTCATTGTAAGGAAAACAA 59.713 33.333 0.00 0.00 40.85 2.83
41 42 6.775142 TGGTGAGATTCATTGTAAGGAAAACA 59.225 34.615 0.00 0.00 32.03 2.83
42 43 7.040409 ACTGGTGAGATTCATTGTAAGGAAAAC 60.040 37.037 0.00 0.00 32.03 2.43
43 44 7.004086 ACTGGTGAGATTCATTGTAAGGAAAA 58.996 34.615 0.00 0.00 32.03 2.29
44 45 6.542821 ACTGGTGAGATTCATTGTAAGGAAA 58.457 36.000 0.00 0.00 32.03 3.13
45 46 6.126863 ACTGGTGAGATTCATTGTAAGGAA 57.873 37.500 0.00 0.00 32.87 3.36
46 47 5.762179 ACTGGTGAGATTCATTGTAAGGA 57.238 39.130 0.00 0.00 0.00 3.36
47 48 5.939883 TGAACTGGTGAGATTCATTGTAAGG 59.060 40.000 0.00 0.00 0.00 2.69
48 49 6.128172 GGTGAACTGGTGAGATTCATTGTAAG 60.128 42.308 0.00 0.00 34.98 2.34
49 50 5.705441 GGTGAACTGGTGAGATTCATTGTAA 59.295 40.000 0.00 0.00 34.98 2.41
50 51 5.245531 GGTGAACTGGTGAGATTCATTGTA 58.754 41.667 0.00 0.00 34.98 2.41
51 52 4.074970 GGTGAACTGGTGAGATTCATTGT 58.925 43.478 0.00 0.00 34.98 2.71
52 53 3.441572 GGGTGAACTGGTGAGATTCATTG 59.558 47.826 0.00 0.00 34.98 2.82
53 54 3.690460 GGGTGAACTGGTGAGATTCATT 58.310 45.455 0.00 0.00 34.98 2.57
54 55 2.355108 CGGGTGAACTGGTGAGATTCAT 60.355 50.000 0.00 0.00 34.98 2.57
55 56 1.001974 CGGGTGAACTGGTGAGATTCA 59.998 52.381 0.00 0.00 0.00 2.57
56 57 1.002087 ACGGGTGAACTGGTGAGATTC 59.998 52.381 0.00 0.00 0.00 2.52
57 58 1.002087 GACGGGTGAACTGGTGAGATT 59.998 52.381 0.00 0.00 0.00 2.40
58 59 0.608640 GACGGGTGAACTGGTGAGAT 59.391 55.000 0.00 0.00 0.00 2.75
59 60 0.757561 TGACGGGTGAACTGGTGAGA 60.758 55.000 0.00 0.00 0.00 3.27
60 61 0.321671 ATGACGGGTGAACTGGTGAG 59.678 55.000 0.00 0.00 0.00 3.51
61 62 0.034756 CATGACGGGTGAACTGGTGA 59.965 55.000 0.00 0.00 0.00 4.02
62 63 0.034756 TCATGACGGGTGAACTGGTG 59.965 55.000 0.00 0.00 0.00 4.17
63 64 0.762418 TTCATGACGGGTGAACTGGT 59.238 50.000 0.00 0.00 31.07 4.00
64 65 1.806542 CTTTCATGACGGGTGAACTGG 59.193 52.381 0.00 0.00 35.47 4.00
65 66 1.197721 GCTTTCATGACGGGTGAACTG 59.802 52.381 0.00 0.00 35.47 3.16
66 67 1.523758 GCTTTCATGACGGGTGAACT 58.476 50.000 0.00 0.00 35.47 3.01
67 68 0.521735 GGCTTTCATGACGGGTGAAC 59.478 55.000 0.00 0.00 35.47 3.18
68 69 0.109532 TGGCTTTCATGACGGGTGAA 59.890 50.000 0.00 0.00 34.01 3.18
69 70 0.321564 CTGGCTTTCATGACGGGTGA 60.322 55.000 0.00 0.00 0.00 4.02
70 71 1.926511 GCTGGCTTTCATGACGGGTG 61.927 60.000 0.00 0.00 0.00 4.61
71 72 1.675641 GCTGGCTTTCATGACGGGT 60.676 57.895 0.00 0.00 0.00 5.28
72 73 1.372087 GAGCTGGCTTTCATGACGGG 61.372 60.000 0.00 0.00 0.00 5.28
73 74 0.392193 AGAGCTGGCTTTCATGACGG 60.392 55.000 0.00 0.00 0.00 4.79
74 75 0.725686 CAGAGCTGGCTTTCATGACG 59.274 55.000 0.00 0.00 0.00 4.35
75 76 1.093159 CCAGAGCTGGCTTTCATGAC 58.907 55.000 3.18 0.00 44.73 3.06
76 77 3.564262 CCAGAGCTGGCTTTCATGA 57.436 52.632 3.18 0.00 44.73 3.07
99 100 3.591835 GTGGGGGTGTGTGTTGCG 61.592 66.667 0.00 0.00 0.00 4.85
100 101 3.591835 CGTGGGGGTGTGTGTTGC 61.592 66.667 0.00 0.00 0.00 4.17
101 102 1.891919 CTCGTGGGGGTGTGTGTTG 60.892 63.158 0.00 0.00 0.00 3.33
102 103 2.508928 CTCGTGGGGGTGTGTGTT 59.491 61.111 0.00 0.00 0.00 3.32
103 104 4.250305 GCTCGTGGGGGTGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
106 107 4.742201 CTCGCTCGTGGGGGTGTG 62.742 72.222 1.51 0.00 0.00 3.82
129 130 1.519455 CATGAGTCCCTTCGGCGAC 60.519 63.158 10.16 0.00 0.00 5.19
130 131 2.721167 CCATGAGTCCCTTCGGCGA 61.721 63.158 4.99 4.99 0.00 5.54
131 132 2.202932 CCATGAGTCCCTTCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
132 133 2.514824 GCCATGAGTCCCTTCGGC 60.515 66.667 0.00 0.00 0.00 5.54
133 134 2.190578 GGCCATGAGTCCCTTCGG 59.809 66.667 0.00 0.00 0.00 4.30
134 135 2.190578 GGGCCATGAGTCCCTTCG 59.809 66.667 4.39 0.00 39.46 3.79
135 136 2.190578 CGGGCCATGAGTCCCTTC 59.809 66.667 4.39 0.00 40.41 3.46
136 137 4.115199 GCGGGCCATGAGTCCCTT 62.115 66.667 4.39 0.00 40.41 3.95
139 140 2.456287 GATAGGCGGGCCATGAGTCC 62.456 65.000 12.97 0.00 38.92 3.85
140 141 1.004440 GATAGGCGGGCCATGAGTC 60.004 63.158 12.97 0.00 38.92 3.36
141 142 2.872388 CGATAGGCGGGCCATGAGT 61.872 63.158 12.97 0.00 38.92 3.41
142 143 2.047844 CGATAGGCGGGCCATGAG 60.048 66.667 12.97 0.00 38.92 2.90
143 144 2.842462 ACGATAGGCGGGCCATGA 60.842 61.111 12.97 0.00 46.49 3.07
144 145 2.666190 CACGATAGGCGGGCCATG 60.666 66.667 12.97 0.00 46.49 3.66
145 146 2.842462 TCACGATAGGCGGGCCAT 60.842 61.111 12.97 3.49 44.96 4.40
146 147 2.914756 TAGTCACGATAGGCGGGCCA 62.915 60.000 12.97 0.00 44.96 5.36
147 148 2.143594 CTAGTCACGATAGGCGGGCC 62.144 65.000 0.18 0.18 44.96 5.80
148 149 1.170919 TCTAGTCACGATAGGCGGGC 61.171 60.000 0.00 0.00 44.96 6.13
150 151 0.592148 GGTCTAGTCACGATAGGCGG 59.408 60.000 0.00 0.00 46.49 6.13
152 153 1.001158 GCTGGTCTAGTCACGATAGGC 60.001 57.143 0.00 0.00 43.77 3.93
153 154 1.609555 GGCTGGTCTAGTCACGATAGG 59.390 57.143 0.00 0.00 43.77 2.57
154 155 1.609555 GGGCTGGTCTAGTCACGATAG 59.390 57.143 0.00 0.00 46.19 2.08
155 156 1.688772 GGGCTGGTCTAGTCACGATA 58.311 55.000 0.00 0.00 30.64 2.92
156 157 1.384989 CGGGCTGGTCTAGTCACGAT 61.385 60.000 0.00 0.00 33.19 3.73
157 158 2.044555 CGGGCTGGTCTAGTCACGA 61.045 63.158 0.00 0.00 33.19 4.35
158 159 2.044555 TCGGGCTGGTCTAGTCACG 61.045 63.158 0.00 0.00 30.64 4.35
159 160 1.511768 GTCGGGCTGGTCTAGTCAC 59.488 63.158 0.00 0.00 30.64 3.67
160 161 2.044555 CGTCGGGCTGGTCTAGTCA 61.045 63.158 0.00 0.00 30.64 3.41
161 162 2.799371 CGTCGGGCTGGTCTAGTC 59.201 66.667 0.00 0.00 0.00 2.59
162 163 3.450115 GCGTCGGGCTGGTCTAGT 61.450 66.667 0.00 0.00 39.11 2.57
163 164 4.554363 CGCGTCGGGCTGGTCTAG 62.554 72.222 0.00 0.00 40.44 2.43
174 175 1.680105 GGTGTGTATGAACCGCGTCG 61.680 60.000 4.92 0.00 0.00 5.12
175 176 2.075761 GGTGTGTATGAACCGCGTC 58.924 57.895 4.92 0.00 0.00 5.19
176 177 4.272100 GGTGTGTATGAACCGCGT 57.728 55.556 4.92 0.00 0.00 6.01
180 181 1.001633 ACCTGTCGGTGTGTATGAACC 59.998 52.381 0.00 0.00 43.51 3.62
181 182 2.450609 ACCTGTCGGTGTGTATGAAC 57.549 50.000 0.00 0.00 43.51 3.18
194 195 3.485346 TTGGCCGAACCCACCTGTC 62.485 63.158 0.00 0.00 37.83 3.51
195 196 3.491598 CTTGGCCGAACCCACCTGT 62.492 63.158 0.00 0.00 37.83 4.00
196 197 2.672996 CTTGGCCGAACCCACCTG 60.673 66.667 0.00 0.00 37.83 4.00
197 198 4.660938 GCTTGGCCGAACCCACCT 62.661 66.667 0.00 0.00 37.83 4.00
218 219 2.892914 TGCGTTGTCCCACGTGTG 60.893 61.111 15.65 2.45 42.43 3.82
219 220 2.893404 GTGCGTTGTCCCACGTGT 60.893 61.111 15.65 0.00 42.43 4.49
220 221 2.373524 CTTGTGCGTTGTCCCACGTG 62.374 60.000 9.08 9.08 42.43 4.49
221 222 2.125065 TTGTGCGTTGTCCCACGT 60.125 55.556 0.00 0.00 42.43 4.49
222 223 1.831389 CTCTTGTGCGTTGTCCCACG 61.831 60.000 0.00 0.00 43.36 4.94
223 224 1.507141 CCTCTTGTGCGTTGTCCCAC 61.507 60.000 0.00 0.00 0.00 4.61
224 225 1.227823 CCTCTTGTGCGTTGTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
225 226 1.966451 CCCTCTTGTGCGTTGTCCC 60.966 63.158 0.00 0.00 0.00 4.46
226 227 2.617274 GCCCTCTTGTGCGTTGTCC 61.617 63.158 0.00 0.00 0.00 4.02
227 228 2.946762 GCCCTCTTGTGCGTTGTC 59.053 61.111 0.00 0.00 0.00 3.18
228 229 2.972505 CGCCCTCTTGTGCGTTGT 60.973 61.111 0.00 0.00 45.43 3.32
233 234 3.567797 GCGATCGCCCTCTTGTGC 61.568 66.667 29.48 0.00 34.56 4.57
234 235 3.257561 CGCGATCGCCCTCTTGTG 61.258 66.667 32.63 13.42 37.98 3.33
235 236 4.514577 CCGCGATCGCCCTCTTGT 62.515 66.667 32.63 0.00 37.98 3.16
261 262 3.740128 ATCCTCATGCGGTGGCGTC 62.740 63.158 0.77 0.00 44.10 5.19
262 263 3.785859 ATCCTCATGCGGTGGCGT 61.786 61.111 0.77 0.00 44.10 5.68
263 264 3.274586 CATCCTCATGCGGTGGCG 61.275 66.667 0.77 0.00 44.10 5.69
264 265 2.903855 CCATCCTCATGCGGTGGC 60.904 66.667 0.77 0.00 40.52 5.01
265 266 2.903855 GCCATCCTCATGCGGTGG 60.904 66.667 15.16 15.16 0.00 4.61
266 267 2.903855 GGCCATCCTCATGCGGTG 60.904 66.667 0.00 0.00 0.00 4.94
267 268 4.195334 GGGCCATCCTCATGCGGT 62.195 66.667 4.39 0.00 0.00 5.68
268 269 4.962836 GGGGCCATCCTCATGCGG 62.963 72.222 4.39 0.00 35.33 5.69
270 271 4.962836 CCGGGGCCATCCTCATGC 62.963 72.222 4.39 0.00 35.33 4.06
271 272 4.275508 CCCGGGGCCATCCTCATG 62.276 72.222 14.71 0.00 35.33 3.07
272 273 3.818105 ATCCCGGGGCCATCCTCAT 62.818 63.158 23.50 0.00 35.33 2.90
273 274 4.514594 ATCCCGGGGCCATCCTCA 62.515 66.667 23.50 0.00 35.33 3.86
274 275 3.641454 GATCCCGGGGCCATCCTC 61.641 72.222 23.50 2.67 35.33 3.71
275 276 4.514594 TGATCCCGGGGCCATCCT 62.515 66.667 23.50 0.00 35.33 3.24
276 277 4.271016 GTGATCCCGGGGCCATCC 62.271 72.222 23.50 6.99 0.00 3.51
277 278 3.171388 AGTGATCCCGGGGCCATC 61.171 66.667 23.50 17.20 0.00 3.51
278 279 3.171388 GAGTGATCCCGGGGCCAT 61.171 66.667 23.50 6.79 0.00 4.40
286 287 4.222847 GACCGCGGGAGTGATCCC 62.223 72.222 31.76 3.03 46.43 3.85
287 288 4.222847 GGACCGCGGGAGTGATCC 62.223 72.222 31.76 21.99 44.85 3.36
288 289 2.701163 GATGGACCGCGGGAGTGATC 62.701 65.000 31.76 16.58 44.85 2.92
289 290 2.764128 ATGGACCGCGGGAGTGAT 60.764 61.111 31.76 6.78 44.85 3.06
290 291 3.458163 GATGGACCGCGGGAGTGA 61.458 66.667 31.76 8.68 44.85 3.41
291 292 4.530857 GGATGGACCGCGGGAGTG 62.531 72.222 31.76 3.45 40.83 3.51
301 302 1.942657 CATGGTTCATGACGGATGGAC 59.057 52.381 0.00 0.45 43.81 4.02
302 303 1.134128 CCATGGTTCATGACGGATGGA 60.134 52.381 16.29 0.00 43.81 3.41
303 304 1.134128 TCCATGGTTCATGACGGATGG 60.134 52.381 12.58 15.56 43.81 3.51
304 305 2.216046 CTCCATGGTTCATGACGGATG 58.784 52.381 12.58 0.00 43.81 3.51
305 306 1.141657 CCTCCATGGTTCATGACGGAT 59.858 52.381 12.58 0.00 43.81 4.18
306 307 0.541392 CCTCCATGGTTCATGACGGA 59.459 55.000 12.58 0.00 43.81 4.69
307 308 3.085208 CCTCCATGGTTCATGACGG 57.915 57.895 12.58 5.53 43.81 4.79
317 318 4.828296 GGCAGCCCACCTCCATGG 62.828 72.222 4.97 4.97 42.93 3.66
318 319 4.828296 GGGCAGCCCACCTCCATG 62.828 72.222 27.33 0.00 44.65 3.66
333 334 3.917760 GGATGGCTCGGACTCGGG 61.918 72.222 0.00 0.00 40.45 5.14
334 335 4.271816 CGGATGGCTCGGACTCGG 62.272 72.222 0.00 0.00 36.95 4.63
354 355 3.997064 CTCTGAGCCGCCCGTTCTG 62.997 68.421 0.00 0.00 0.00 3.02
355 356 3.764466 CTCTGAGCCGCCCGTTCT 61.764 66.667 0.00 0.00 0.00 3.01
356 357 3.708220 CTCTCTGAGCCGCCCGTTC 62.708 68.421 0.00 0.00 0.00 3.95
357 358 3.764466 CTCTCTGAGCCGCCCGTT 61.764 66.667 0.00 0.00 0.00 4.44
391 392 2.825836 GATGGCTTGCCGTGGAGG 60.826 66.667 11.48 0.00 44.97 4.30
392 393 3.197790 CGATGGCTTGCCGTGGAG 61.198 66.667 11.48 0.00 0.00 3.86
393 394 4.015406 ACGATGGCTTGCCGTGGA 62.015 61.111 19.97 0.00 35.02 4.02
394 395 3.803082 CACGATGGCTTGCCGTGG 61.803 66.667 11.48 12.41 46.72 4.94
396 397 1.599518 TTTCACGATGGCTTGCCGT 60.600 52.632 6.00 6.00 36.95 5.68
397 398 1.154225 GTTTCACGATGGCTTGCCG 60.154 57.895 7.18 0.00 0.00 5.69
398 399 1.154225 CGTTTCACGATGGCTTGCC 60.154 57.895 4.43 4.43 46.05 4.52
399 400 1.154225 CCGTTTCACGATGGCTTGC 60.154 57.895 0.00 0.00 46.05 4.01
400 401 1.086696 ATCCGTTTCACGATGGCTTG 58.913 50.000 0.00 0.00 46.05 4.01
401 402 1.086696 CATCCGTTTCACGATGGCTT 58.913 50.000 0.00 0.00 46.05 4.35
402 403 0.744414 CCATCCGTTTCACGATGGCT 60.744 55.000 11.95 0.00 46.05 4.75
403 404 1.721487 CCATCCGTTTCACGATGGC 59.279 57.895 11.95 0.00 46.05 4.40
404 405 0.744414 AGCCATCCGTTTCACGATGG 60.744 55.000 16.75 16.75 46.05 3.51
405 406 1.860950 CTAGCCATCCGTTTCACGATG 59.139 52.381 0.00 0.66 46.05 3.84
406 407 1.202533 CCTAGCCATCCGTTTCACGAT 60.203 52.381 0.00 0.00 46.05 3.73
407 408 0.174845 CCTAGCCATCCGTTTCACGA 59.825 55.000 0.00 0.00 46.05 4.35
408 409 0.174845 TCCTAGCCATCCGTTTCACG 59.825 55.000 0.00 0.00 42.11 4.35
409 410 1.473434 CCTCCTAGCCATCCGTTTCAC 60.473 57.143 0.00 0.00 0.00 3.18
410 411 0.830648 CCTCCTAGCCATCCGTTTCA 59.169 55.000 0.00 0.00 0.00 2.69
411 412 0.106894 CCCTCCTAGCCATCCGTTTC 59.893 60.000 0.00 0.00 0.00 2.78
412 413 1.984288 GCCCTCCTAGCCATCCGTTT 61.984 60.000 0.00 0.00 0.00 3.60
413 414 2.444256 GCCCTCCTAGCCATCCGTT 61.444 63.158 0.00 0.00 0.00 4.44
414 415 2.844839 GCCCTCCTAGCCATCCGT 60.845 66.667 0.00 0.00 0.00 4.69
415 416 2.844362 TGCCCTCCTAGCCATCCG 60.844 66.667 0.00 0.00 0.00 4.18
416 417 1.763546 GAGTGCCCTCCTAGCCATCC 61.764 65.000 0.00 0.00 0.00 3.51
417 418 0.762461 AGAGTGCCCTCCTAGCCATC 60.762 60.000 0.00 0.00 38.58 3.51
418 419 0.762461 GAGAGTGCCCTCCTAGCCAT 60.762 60.000 0.00 0.00 38.58 4.40
419 420 1.381872 GAGAGTGCCCTCCTAGCCA 60.382 63.158 0.00 0.00 38.58 4.75
420 421 2.494530 CGAGAGTGCCCTCCTAGCC 61.495 68.421 0.00 0.00 38.58 3.93
421 422 3.124686 CGAGAGTGCCCTCCTAGC 58.875 66.667 0.00 0.00 38.58 3.42
422 423 3.124686 GCGAGAGTGCCCTCCTAG 58.875 66.667 0.00 0.00 38.58 3.02
430 431 4.200283 CTCCGAGGGCGAGAGTGC 62.200 72.222 0.00 0.00 40.82 4.40
431 432 3.522731 CCTCCGAGGGCGAGAGTG 61.523 72.222 6.53 0.00 40.82 3.51
432 433 3.999297 GACCTCCGAGGGCGAGAGT 62.999 68.421 18.99 0.00 40.58 3.24
433 434 3.213402 GACCTCCGAGGGCGAGAG 61.213 72.222 18.99 0.00 40.58 3.20
438 439 2.838693 GTAGGGACCTCCGAGGGC 60.839 72.222 18.99 16.01 45.05 5.19
439 440 2.123382 GGTAGGGACCTCCGAGGG 60.123 72.222 18.99 1.08 43.16 4.30
455 456 0.254178 ATGCTGAAGTACCTGCCTGG 59.746 55.000 0.00 0.00 42.93 4.45
456 457 1.661341 GATGCTGAAGTACCTGCCTG 58.339 55.000 0.00 0.00 0.00 4.85
457 458 0.543749 GGATGCTGAAGTACCTGCCT 59.456 55.000 0.00 0.00 0.00 4.75
458 459 0.543749 AGGATGCTGAAGTACCTGCC 59.456 55.000 0.00 0.00 0.00 4.85
459 460 1.484240 AGAGGATGCTGAAGTACCTGC 59.516 52.381 0.00 0.00 0.00 4.85
460 461 6.007076 TCTATAGAGGATGCTGAAGTACCTG 58.993 44.000 0.00 0.00 0.00 4.00
461 462 6.207509 TCTATAGAGGATGCTGAAGTACCT 57.792 41.667 0.00 0.00 0.00 3.08
462 463 6.492087 ACTTCTATAGAGGATGCTGAAGTACC 59.508 42.308 18.03 0.00 40.19 3.34
463 464 7.519032 ACTTCTATAGAGGATGCTGAAGTAC 57.481 40.000 18.03 0.00 40.19 2.73
464 465 9.069082 GTTACTTCTATAGAGGATGCTGAAGTA 57.931 37.037 18.03 15.60 41.53 2.24
465 466 7.782644 AGTTACTTCTATAGAGGATGCTGAAGT 59.217 37.037 18.03 17.14 43.07 3.01
466 467 8.177119 AGTTACTTCTATAGAGGATGCTGAAG 57.823 38.462 18.03 8.97 36.49 3.02
467 468 9.290988 CTAGTTACTTCTATAGAGGATGCTGAA 57.709 37.037 18.03 0.88 0.00 3.02
468 469 7.392113 GCTAGTTACTTCTATAGAGGATGCTGA 59.608 40.741 18.03 0.00 0.00 4.26
469 470 7.175816 TGCTAGTTACTTCTATAGAGGATGCTG 59.824 40.741 18.03 5.37 0.00 4.41
470 471 7.235079 TGCTAGTTACTTCTATAGAGGATGCT 58.765 38.462 18.03 13.13 0.00 3.79
471 472 7.455641 TGCTAGTTACTTCTATAGAGGATGC 57.544 40.000 18.03 11.68 0.00 3.91
472 473 9.237187 TCATGCTAGTTACTTCTATAGAGGATG 57.763 37.037 18.03 12.59 0.00 3.51
473 474 9.238368 GTCATGCTAGTTACTTCTATAGAGGAT 57.762 37.037 18.03 5.70 0.00 3.24
474 475 8.218488 TGTCATGCTAGTTACTTCTATAGAGGA 58.782 37.037 18.03 0.00 0.00 3.71
475 476 8.397575 TGTCATGCTAGTTACTTCTATAGAGG 57.602 38.462 10.18 10.18 0.00 3.69
480 481 9.142014 AGAGATTGTCATGCTAGTTACTTCTAT 57.858 33.333 0.00 0.00 0.00 1.98
488 489 8.918116 TCTATAACAGAGATTGTCATGCTAGTT 58.082 33.333 0.00 0.00 39.73 2.24
562 563 4.472286 CGACACCAACATAAAACATCACC 58.528 43.478 0.00 0.00 0.00 4.02
564 565 3.057876 GGCGACACCAACATAAAACATCA 60.058 43.478 0.00 0.00 38.86 3.07
576 577 0.322098 ATTCGAATGGGCGACACCAA 60.322 50.000 10.50 0.00 45.13 3.67
602 603 4.631377 GGCACAAATAAAGATTTCCTTGGC 59.369 41.667 0.00 0.00 32.73 4.52
605 606 5.046376 CCCTGGCACAAATAAAGATTTCCTT 60.046 40.000 0.00 0.00 38.70 3.36
635 636 3.116959 AGGGGGTTGACATTCCGTATAA 58.883 45.455 0.00 0.00 0.00 0.98
743 759 4.598062 GTCAAGGAAACGAAAAGGTCAAG 58.402 43.478 0.00 0.00 0.00 3.02
767 810 4.475135 GACCAAGGGCTCCGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
768 811 4.475135 GGACCAAGGGCTCCGCTC 62.475 72.222 0.00 0.00 0.00 5.03
782 825 2.230750 CCGAATCTCCGTATAAGGGGAC 59.769 54.545 9.68 0.00 44.82 4.46
783 826 2.108776 TCCGAATCTCCGTATAAGGGGA 59.891 50.000 9.91 9.91 46.30 4.81
784 827 2.522185 TCCGAATCTCCGTATAAGGGG 58.478 52.381 4.77 0.97 0.00 4.79
785 828 6.466885 AATATCCGAATCTCCGTATAAGGG 57.533 41.667 4.77 0.00 0.00 3.95
786 829 6.255887 GCAAATATCCGAATCTCCGTATAAGG 59.744 42.308 0.00 0.00 0.00 2.69
787 830 6.811665 TGCAAATATCCGAATCTCCGTATAAG 59.188 38.462 0.00 0.00 0.00 1.73
788 831 6.693466 TGCAAATATCCGAATCTCCGTATAA 58.307 36.000 0.00 0.00 0.00 0.98
789 832 6.275494 TGCAAATATCCGAATCTCCGTATA 57.725 37.500 0.00 0.00 0.00 1.47
842 885 0.246635 CGAACGAAGGGGAGATGTGT 59.753 55.000 0.00 0.00 0.00 3.72
887 930 4.399004 AGGCAAGTGAAGAGCAGTATAG 57.601 45.455 0.00 0.00 0.00 1.31
894 937 1.003003 AGAGGAAGGCAAGTGAAGAGC 59.997 52.381 0.00 0.00 0.00 4.09
909 952 2.121538 CGATGCGGGAGACAGAGGA 61.122 63.158 0.00 0.00 0.00 3.71
956 999 3.838271 GTGATCTCCGGCGAGGCA 61.838 66.667 9.30 0.00 40.77 4.75
1583 1627 3.507233 GCATCACTCATCAAACCCAAAGA 59.493 43.478 0.00 0.00 0.00 2.52
1726 1771 5.226504 TGATGCCCTGTAGATATATCCCT 57.773 43.478 9.18 0.00 0.00 4.20
1824 1869 3.250744 TCAGAGCACGTACATAACAAGC 58.749 45.455 0.00 0.00 0.00 4.01
1840 1885 1.144565 CCGCAGATCGCTGTTCAGAG 61.145 60.000 3.84 0.46 44.17 3.35
1922 3180 1.656587 AGAAGGCCCAAAAATTCCCC 58.343 50.000 0.00 0.00 0.00 4.81
1945 3204 3.464907 CAGCAGATCACAGGATAACCAG 58.535 50.000 0.00 0.00 38.94 4.00
2435 3732 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2436 3733 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2437 3734 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2438 3735 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2439 3736 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2440 3737 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2441 3738 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2442 3739 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2443 3740 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2444 3741 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2445 3742 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2446 3743 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2447 3744 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2448 3745 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2449 3746 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2450 3747 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
2451 3748 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
2452 3749 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
2453 3750 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
2454 3751 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
2455 3752 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
2456 3753 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
2457 3754 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
2480 3777 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2481 3778 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2482 3779 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2483 3780 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2484 3781 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2485 3782 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2486 3783 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2487 3784 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2488 3785 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2489 3786 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2490 3787 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2491 3788 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2492 3789 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2493 3790 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2494 3791 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2495 3792 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2496 3793 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2497 3794 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2498 3795 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2499 3796 3.453353 CCTACTCCCTCCGTTCCAAAATA 59.547 47.826 0.00 0.00 0.00 1.40
2500 3797 2.238898 CCTACTCCCTCCGTTCCAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
2501 3798 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
2502 3799 1.203212 TCCTACTCCCTCCGTTCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2503 3800 0.410663 TCCTACTCCCTCCGTTCCAA 59.589 55.000 0.00 0.00 0.00 3.53
2504 3801 0.410663 TTCCTACTCCCTCCGTTCCA 59.589 55.000 0.00 0.00 0.00 3.53
2505 3802 1.790818 ATTCCTACTCCCTCCGTTCC 58.209 55.000 0.00 0.00 0.00 3.62
2506 3803 3.908643 AAATTCCTACTCCCTCCGTTC 57.091 47.619 0.00 0.00 0.00 3.95
2507 3804 3.131755 CGTAAATTCCTACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
2508 3805 2.692041 CGTAAATTCCTACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
2509 3806 2.545322 GCGTAAATTCCTACTCCCTCCG 60.545 54.545 0.00 0.00 0.00 4.63
2510 3807 2.224233 GGCGTAAATTCCTACTCCCTCC 60.224 54.545 0.00 0.00 0.00 4.30
2511 3808 2.699321 AGGCGTAAATTCCTACTCCCTC 59.301 50.000 0.00 0.00 28.45 4.30
2512 3809 2.760581 AGGCGTAAATTCCTACTCCCT 58.239 47.619 0.00 0.00 28.45 4.20
2513 3810 3.464907 GAAGGCGTAAATTCCTACTCCC 58.535 50.000 0.00 0.00 28.45 4.30
2514 3811 3.121544 CGAAGGCGTAAATTCCTACTCC 58.878 50.000 0.00 0.00 31.24 3.85
2515 3812 4.037858 TCGAAGGCGTAAATTCCTACTC 57.962 45.455 0.00 0.00 38.98 2.59
2516 3813 4.460948 TTCGAAGGCGTAAATTCCTACT 57.539 40.909 0.00 0.00 38.98 2.57
2517 3814 5.048507 AGATTCGAAGGCGTAAATTCCTAC 58.951 41.667 3.35 0.00 38.98 3.18
2518 3815 5.272283 AGATTCGAAGGCGTAAATTCCTA 57.728 39.130 3.35 0.00 38.98 2.94
2731 4066 0.178767 CATGCCTGGCACTAGCACTA 59.821 55.000 25.99 0.00 43.04 2.74
2732 4067 1.077930 CATGCCTGGCACTAGCACT 60.078 57.895 25.99 2.60 43.04 4.40
2748 4094 0.176680 CCTGTCTCACCTAAGCGCAT 59.823 55.000 11.47 0.00 0.00 4.73
2884 4230 7.602265 GGTTACCATGTGAAAATTGTTATTGCT 59.398 33.333 0.00 0.00 0.00 3.91
3356 4702 4.396166 ACAAAATTCCAGATTGGTCTAGCG 59.604 41.667 0.00 0.00 39.03 4.26
3418 4764 9.651913 GATAGACATCAAAGAGAGAAGACTTTT 57.348 33.333 0.00 0.00 34.68 2.27
3419 4765 7.973388 CGATAGACATCAAAGAGAGAAGACTTT 59.027 37.037 0.00 0.00 35.94 2.66
3420 4766 7.479980 CGATAGACATCAAAGAGAGAAGACTT 58.520 38.462 0.00 0.00 39.76 3.01
3752 5103 1.888512 ACACAGCAAGCAATTACAGGG 59.111 47.619 0.00 0.00 0.00 4.45
3768 5119 5.825679 ACAACAGGTGCTAAATTCTTACACA 59.174 36.000 0.00 0.00 32.89 3.72
3769 5120 6.313744 ACAACAGGTGCTAAATTCTTACAC 57.686 37.500 0.00 0.00 0.00 2.90
3833 5184 6.071952 CCAAAATGGGAATATAATGACGAGGG 60.072 42.308 0.00 0.00 32.67 4.30
4057 5412 5.294356 ACAAACACAGTTGCTACGAAGATA 58.706 37.500 0.00 0.00 31.29 1.98
4295 5818 4.331717 TCTCAGACTTCAAAAACACGGAAC 59.668 41.667 0.00 0.00 0.00 3.62
4345 5869 8.490311 AGAGGGAGTAGATTCTTAAAATCCAAG 58.510 37.037 4.35 0.00 0.00 3.61
4426 5950 5.048782 TCAGTGCATCACCAATTGTTCTTAC 60.049 40.000 4.43 0.00 34.49 2.34
4427 5951 5.069318 TCAGTGCATCACCAATTGTTCTTA 58.931 37.500 4.43 0.00 34.49 2.10
4428 5952 3.890756 TCAGTGCATCACCAATTGTTCTT 59.109 39.130 4.43 0.00 34.49 2.52
4429 5953 3.489355 TCAGTGCATCACCAATTGTTCT 58.511 40.909 4.43 0.00 34.49 3.01
5285 6864 1.737735 CCTCTCGCACACATCGCAA 60.738 57.895 0.00 0.00 0.00 4.85
5438 7017 2.124151 CTTCAAGGCCCCCATCCG 60.124 66.667 0.00 0.00 0.00 4.18
5593 7173 6.702716 TGGAAACGTTAGAAGGTTTTGAAT 57.297 33.333 12.77 0.00 44.23 2.57
5600 7180 3.326880 AGGACATGGAAACGTTAGAAGGT 59.673 43.478 0.00 0.00 0.00 3.50
5825 7607 3.499157 TCGGTAAACCAACTATTGTGTGC 59.501 43.478 0.00 0.00 35.14 4.57
5859 7641 1.529010 TTGCAGAGCACCACCTTGG 60.529 57.895 0.00 0.00 45.02 3.61
5969 7915 0.247814 CGATCCATGTTGCTTGTCGC 60.248 55.000 0.00 0.00 39.77 5.19
5970 7916 1.358877 TCGATCCATGTTGCTTGTCG 58.641 50.000 0.00 0.00 0.00 4.35
5977 7923 1.267732 GCTTCGCTTCGATCCATGTTG 60.268 52.381 0.00 0.00 35.23 3.33
5984 7930 4.522297 AAGTATTTGCTTCGCTTCGATC 57.478 40.909 0.00 0.00 35.23 3.69
5985 7931 4.946784 AAAGTATTTGCTTCGCTTCGAT 57.053 36.364 0.00 0.00 36.60 3.59
5986 7932 7.709269 ATATAAAGTATTTGCTTCGCTTCGA 57.291 32.000 0.00 0.00 39.63 3.71
6036 7985 3.594134 AGAAGAGTTGAAAGGATGAGCG 58.406 45.455 0.00 0.00 0.00 5.03
6050 7999 6.352308 GGAGATACTAAAGGCCAAAGAAGAGT 60.352 42.308 5.01 0.40 0.00 3.24
6085 8034 9.152595 CCATTGACACAGATGATGAGATTATAG 57.847 37.037 0.00 0.00 0.00 1.31
6102 8051 3.084039 TGAAAGGATGAGCCATTGACAC 58.916 45.455 0.00 0.00 40.02 3.67
6138 8087 4.215908 TCATTCTCTGCCGAGGTACTAAT 58.784 43.478 5.22 0.00 41.55 1.73
6145 8094 1.110442 ACTCTCATTCTCTGCCGAGG 58.890 55.000 5.22 0.00 37.86 4.63
6203 8152 9.855021 AATAACTAATAATTTGTGAACCAGTGC 57.145 29.630 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.