Multiple sequence alignment - TraesCS1D01G111600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G111600 chr1D 100.000 2792 0 0 1 2792 106959771 106962562 0.000000e+00 5156
1 TraesCS1D01G111600 chr1D 91.358 324 26 1 2395 2718 250132738 250133059 2.550000e-120 442
2 TraesCS1D01G111600 chr1D 91.589 107 8 1 81 187 483907576 483907681 2.240000e-31 147
3 TraesCS1D01G111600 chr1A 93.212 1591 66 13 582 2165 105887414 105885859 0.000000e+00 2302
4 TraesCS1D01G111600 chr1A 83.497 612 75 8 1 596 105902820 105902219 5.260000e-152 547
5 TraesCS1D01G111600 chr1A 88.235 340 37 2 2375 2714 320151523 320151859 1.200000e-108 403
6 TraesCS1D01G111600 chr1A 91.346 104 9 0 87 190 351606858 351606755 2.900000e-30 143
7 TraesCS1D01G111600 chr1B 91.762 1396 57 19 641 2035 159913536 159912198 0.000000e+00 1888
8 TraesCS1D01G111600 chr1B 89.535 344 32 3 2376 2719 364427339 364427000 1.540000e-117 433
9 TraesCS1D01G111600 chr1B 83.191 351 22 17 2032 2381 159912154 159911840 1.270000e-73 287
10 TraesCS1D01G111600 chr1B 82.622 328 39 12 1 326 159913973 159913662 9.850000e-70 274
11 TraesCS1D01G111600 chr6A 96.232 345 13 0 2375 2719 556039298 556039642 1.450000e-157 566
12 TraesCS1D01G111600 chr6A 92.308 104 7 1 84 187 596589346 596589448 2.240000e-31 147
13 TraesCS1D01G111600 chr6A 90.826 109 8 1 85 191 53118298 53118190 8.060000e-31 145
14 TraesCS1D01G111600 chr4A 93.043 345 22 1 2375 2719 270328108 270328450 1.150000e-138 503
15 TraesCS1D01G111600 chr7D 92.733 344 23 2 2376 2719 35531809 35531468 1.930000e-136 496
16 TraesCS1D01G111600 chr7D 90.741 108 9 1 77 183 491253290 491253397 2.900000e-30 143
17 TraesCS1D01G111600 chr2D 97.312 186 5 0 2533 2718 72768603 72768418 1.610000e-82 316
18 TraesCS1D01G111600 chr2D 92.727 110 3 1 2384 2493 72768702 72768598 1.340000e-33 154
19 TraesCS1D01G111600 chr3A 93.069 101 7 0 84 184 156206283 156206383 6.230000e-32 148
20 TraesCS1D01G111600 chr5B 90.000 110 9 2 77 186 693877785 693877678 1.040000e-29 141
21 TraesCS1D01G111600 chr5B 89.189 111 11 1 73 183 693583789 693583898 1.350000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G111600 chr1D 106959771 106962562 2791 False 5156.000000 5156 100.000000 1 2792 1 chr1D.!!$F1 2791
1 TraesCS1D01G111600 chr1A 105885859 105887414 1555 True 2302.000000 2302 93.212000 582 2165 1 chr1A.!!$R1 1583
2 TraesCS1D01G111600 chr1A 105902219 105902820 601 True 547.000000 547 83.497000 1 596 1 chr1A.!!$R2 595
3 TraesCS1D01G111600 chr1B 159911840 159913973 2133 True 816.333333 1888 85.858333 1 2381 3 chr1B.!!$R2 2380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 900 0.607489 CCATCCATTCCTCGATGGCC 60.607 60.0 0.0 0.0 46.71 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 2608 0.034059 AAGCAGGTCTCACTCGGTTG 59.966 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 102 7.392673 TGATTACATTATACTACTCCCTCCGTC 59.607 40.741 0.00 0.00 0.00 4.79
124 128 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
130 134 9.694137 ATAAGTGTCTCAACTTTGTACTAACTC 57.306 33.333 0.00 0.00 40.77 3.01
133 137 8.910944 AGTGTCTCAACTTTGTACTAACTCTAA 58.089 33.333 0.00 0.00 0.00 2.10
169 173 9.649167 GTACTAGGCTTGAGACACTTATTTTAA 57.351 33.333 2.20 0.00 0.00 1.52
172 176 9.827411 CTAGGCTTGAGACACTTATTTTAAAAC 57.173 33.333 1.97 0.00 0.00 2.43
225 233 3.195698 CGCGGTTGCTAAGGAGGC 61.196 66.667 0.00 0.00 39.65 4.70
283 291 2.054687 TCGTATGTCGTTTGTTCGCT 57.945 45.000 0.00 0.00 40.80 4.93
292 300 3.911964 GTCGTTTGTTCGCTTGCATTTAT 59.088 39.130 0.00 0.00 0.00 1.40
294 302 4.083537 TCGTTTGTTCGCTTGCATTTATCT 60.084 37.500 0.00 0.00 0.00 1.98
299 307 4.935205 TGTTCGCTTGCATTTATCTGTAGT 59.065 37.500 0.00 0.00 0.00 2.73
302 310 4.566759 TCGCTTGCATTTATCTGTAGTGTC 59.433 41.667 0.00 0.00 0.00 3.67
303 311 4.548916 CGCTTGCATTTATCTGTAGTGTCG 60.549 45.833 0.00 0.00 0.00 4.35
321 329 1.205179 TCGAAATTGCACTAGCCCGTA 59.795 47.619 0.00 0.00 41.13 4.02
329 337 4.261781 CTAGCCCGTACCCGCGTC 62.262 72.222 4.92 0.00 0.00 5.19
333 341 3.589881 CCCGTACCCGCGTCTAGG 61.590 72.222 4.92 0.45 0.00 3.02
343 351 1.375013 GCGTCTAGGAAAACGGCCA 60.375 57.895 2.24 0.00 39.24 5.36
351 359 6.090783 GTCTAGGAAAACGGCCAAATTTAAG 58.909 40.000 2.24 0.17 0.00 1.85
353 361 3.070302 AGGAAAACGGCCAAATTTAAGCA 59.930 39.130 2.24 0.00 0.00 3.91
363 371 3.189285 CAAATTTAAGCATTCCTGGCGG 58.811 45.455 0.00 0.00 36.08 6.13
371 379 1.689233 ATTCCTGGCGGCCTGACTA 60.689 57.895 25.41 11.31 0.00 2.59
389 397 5.057149 TGACTAAGGAGTGCTTTGAGTTTC 58.943 41.667 12.39 0.94 35.45 2.78
393 401 1.334149 GGAGTGCTTTGAGTTTCACGC 60.334 52.381 0.00 0.00 34.84 5.34
398 406 1.069227 GCTTTGAGTTTCACGCGGATT 60.069 47.619 12.47 0.00 0.00 3.01
404 412 3.810941 TGAGTTTCACGCGGATTAGTTTT 59.189 39.130 12.47 0.00 0.00 2.43
445 453 4.261572 GCCAAACAACTCAGATTTAGCACA 60.262 41.667 0.00 0.00 0.00 4.57
452 460 8.340618 ACAACTCAGATTTAGCACATTACAAT 57.659 30.769 0.00 0.00 0.00 2.71
465 473 4.451774 CACATTACAATTTGGTTGGGCTTG 59.548 41.667 0.78 0.00 42.28 4.01
471 479 1.126488 TTTGGTTGGGCTTGATGCAA 58.874 45.000 0.00 0.00 45.15 4.08
472 480 1.350071 TTGGTTGGGCTTGATGCAAT 58.650 45.000 0.00 0.00 45.15 3.56
474 482 1.188863 GGTTGGGCTTGATGCAATCT 58.811 50.000 0.00 0.00 45.81 2.40
483 491 4.168760 GCTTGATGCAATCTACCAAACAC 58.831 43.478 0.00 0.00 45.81 3.32
571 590 0.748005 CGGACGGAGCAAATGGGATT 60.748 55.000 0.00 0.00 0.00 3.01
572 591 1.474320 CGGACGGAGCAAATGGGATTA 60.474 52.381 0.00 0.00 0.00 1.75
573 592 2.650322 GGACGGAGCAAATGGGATTAA 58.350 47.619 0.00 0.00 0.00 1.40
574 593 3.222603 GGACGGAGCAAATGGGATTAAT 58.777 45.455 0.00 0.00 0.00 1.40
687 733 8.356533 AGAAATTGCAAATTACACACTTTCAG 57.643 30.769 1.71 0.00 36.18 3.02
714 760 8.848474 ATTACTATGTGCAGTTTTAAGTGACT 57.152 30.769 1.56 0.00 0.00 3.41
852 900 0.607489 CCATCCATTCCTCGATGGCC 60.607 60.000 0.00 0.00 46.71 5.36
887 935 2.096980 TCTCACCTTACGTACAGCATCG 59.903 50.000 0.00 0.00 0.00 3.84
1191 1243 2.436292 CTCCAGCTGCTGCAGTCC 60.436 66.667 28.50 14.49 42.74 3.85
1194 1246 3.054503 CAGCTGCTGCAGTCCACC 61.055 66.667 28.50 13.08 42.74 4.61
1287 1339 2.030562 CCGGACAACGCCTTCACT 59.969 61.111 0.00 0.00 42.52 3.41
1461 1513 3.458579 CCGCTCAACGTCACGTCG 61.459 66.667 1.67 2.10 39.99 5.12
2048 2155 6.878923 TGTAGCAAAGTAGCAATATTGAGTGT 59.121 34.615 19.73 2.83 36.85 3.55
2075 2182 2.283604 GCCACCCGGGGTTCAATT 60.284 61.111 27.92 0.00 37.04 2.32
2078 2185 1.926108 CCACCCGGGGTTCAATTAAA 58.074 50.000 27.92 0.00 31.02 1.52
2079 2186 1.546923 CCACCCGGGGTTCAATTAAAC 59.453 52.381 27.92 0.00 31.02 2.01
2080 2187 1.200484 CACCCGGGGTTCAATTAAACG 59.800 52.381 27.92 0.00 31.02 3.60
2081 2188 1.202915 ACCCGGGGTTCAATTAAACGT 60.203 47.619 27.92 0.00 27.29 3.99
2082 2189 1.887854 CCCGGGGTTCAATTAAACGTT 59.112 47.619 14.71 0.00 0.00 3.99
2083 2190 2.296752 CCCGGGGTTCAATTAAACGTTT 59.703 45.455 18.90 18.90 0.00 3.60
2084 2191 3.243805 CCCGGGGTTCAATTAAACGTTTT 60.244 43.478 20.19 0.00 0.00 2.43
2085 2192 4.370049 CCGGGGTTCAATTAAACGTTTTT 58.630 39.130 20.19 5.42 0.00 1.94
2086 2193 4.445052 CCGGGGTTCAATTAAACGTTTTTC 59.555 41.667 20.19 2.63 0.00 2.29
2087 2194 5.283294 CGGGGTTCAATTAAACGTTTTTCT 58.717 37.500 20.19 1.28 0.00 2.52
2088 2195 5.749588 CGGGGTTCAATTAAACGTTTTTCTT 59.250 36.000 20.19 7.64 0.00 2.52
2089 2196 6.074729 CGGGGTTCAATTAAACGTTTTTCTTC 60.075 38.462 20.19 4.61 0.00 2.87
2130 2239 5.379732 TCAATTAAACGATGAAACCACCC 57.620 39.130 0.00 0.00 0.00 4.61
2160 2269 4.084013 CGGTCTCAAACAGTTACATCAACC 60.084 45.833 0.00 0.00 37.93 3.77
2192 2301 6.391227 AAAAGTTACATCAACCACCTCTTG 57.609 37.500 0.00 0.00 37.93 3.02
2193 2302 4.974645 AGTTACATCAACCACCTCTTGA 57.025 40.909 0.00 0.00 37.93 3.02
2194 2303 5.505181 AGTTACATCAACCACCTCTTGAT 57.495 39.130 0.00 0.00 38.62 2.57
2195 2304 6.620877 AGTTACATCAACCACCTCTTGATA 57.379 37.500 0.00 0.00 36.42 2.15
2196 2305 7.200434 AGTTACATCAACCACCTCTTGATAT 57.800 36.000 0.00 0.00 36.42 1.63
2197 2306 8.319057 AGTTACATCAACCACCTCTTGATATA 57.681 34.615 0.00 0.00 36.42 0.86
2198 2307 8.424918 AGTTACATCAACCACCTCTTGATATAG 58.575 37.037 0.00 0.00 36.42 1.31
2199 2308 8.421784 GTTACATCAACCACCTCTTGATATAGA 58.578 37.037 0.00 0.00 36.42 1.98
2200 2309 7.060383 ACATCAACCACCTCTTGATATAGAG 57.940 40.000 0.00 0.00 36.42 2.43
2232 2341 6.938030 AGTTAAATCCACGGTCTTCAACATTA 59.062 34.615 0.00 0.00 0.00 1.90
2235 2344 4.345859 TCCACGGTCTTCAACATTACTT 57.654 40.909 0.00 0.00 0.00 2.24
2264 2373 3.339141 CAGGGGTTCTCAAACTTAGAGC 58.661 50.000 0.00 0.00 35.61 4.09
2272 2381 5.916661 TCTCAAACTTAGAGCGGAGTATT 57.083 39.130 0.00 0.00 33.15 1.89
2368 2477 5.997385 TCTGATTCTTTTGCGGTAAACTTC 58.003 37.500 0.00 0.00 0.00 3.01
2374 2483 6.870971 TCTTTTGCGGTAAACTTCTACAAT 57.129 33.333 0.00 0.00 0.00 2.71
2376 2485 7.708998 TCTTTTGCGGTAAACTTCTACAATTT 58.291 30.769 0.00 0.00 0.00 1.82
2398 2507 4.561735 TTTTTAGGACAAAGAAGTGGCG 57.438 40.909 0.00 0.00 0.00 5.69
2399 2508 1.519408 TTAGGACAAAGAAGTGGCGC 58.481 50.000 0.00 0.00 0.00 6.53
2400 2509 0.321298 TAGGACAAAGAAGTGGCGCC 60.321 55.000 22.73 22.73 0.00 6.53
2401 2510 1.600916 GGACAAAGAAGTGGCGCCT 60.601 57.895 29.70 7.33 0.00 5.52
2402 2511 1.172812 GGACAAAGAAGTGGCGCCTT 61.173 55.000 29.70 15.25 0.00 4.35
2403 2512 1.519408 GACAAAGAAGTGGCGCCTTA 58.481 50.000 29.70 4.80 0.00 2.69
2404 2513 1.464997 GACAAAGAAGTGGCGCCTTAG 59.535 52.381 29.70 10.94 0.00 2.18
2405 2514 0.804989 CAAAGAAGTGGCGCCTTAGG 59.195 55.000 29.70 5.33 0.00 2.69
2406 2515 0.960861 AAAGAAGTGGCGCCTTAGGC 60.961 55.000 29.70 14.22 46.75 3.93
2415 2524 2.111043 GCCTTAGGCGCCTATGCA 59.889 61.111 35.49 23.83 39.62 3.96
2416 2525 1.302832 GCCTTAGGCGCCTATGCAT 60.303 57.895 35.49 18.48 39.62 3.96
2417 2526 0.890996 GCCTTAGGCGCCTATGCATT 60.891 55.000 35.49 17.84 39.62 3.56
2418 2527 1.610624 GCCTTAGGCGCCTATGCATTA 60.611 52.381 35.49 22.63 39.62 1.90
2419 2528 2.778299 CCTTAGGCGCCTATGCATTAA 58.222 47.619 35.60 20.18 37.32 1.40
2420 2529 3.347216 CCTTAGGCGCCTATGCATTAAT 58.653 45.455 35.60 10.03 37.32 1.40
2421 2530 3.375299 CCTTAGGCGCCTATGCATTAATC 59.625 47.826 35.60 0.00 37.32 1.75
2422 2531 2.867109 AGGCGCCTATGCATTAATCT 57.133 45.000 31.86 0.00 37.32 2.40
2423 2532 2.430465 AGGCGCCTATGCATTAATCTG 58.570 47.619 31.86 0.00 37.32 2.90
2424 2533 2.038952 AGGCGCCTATGCATTAATCTGA 59.961 45.455 31.86 0.00 37.32 3.27
2425 2534 2.813754 GGCGCCTATGCATTAATCTGAA 59.186 45.455 22.15 0.00 37.32 3.02
2426 2535 3.120060 GGCGCCTATGCATTAATCTGAAG 60.120 47.826 22.15 0.00 37.32 3.02
2427 2536 3.748048 GCGCCTATGCATTAATCTGAAGA 59.252 43.478 3.54 0.00 37.32 2.87
2428 2537 4.214119 GCGCCTATGCATTAATCTGAAGAA 59.786 41.667 3.54 0.00 37.32 2.52
2429 2538 5.683859 CGCCTATGCATTAATCTGAAGAAC 58.316 41.667 3.54 0.00 37.32 3.01
2430 2539 5.237127 CGCCTATGCATTAATCTGAAGAACA 59.763 40.000 3.54 0.00 37.32 3.18
2431 2540 6.238456 CGCCTATGCATTAATCTGAAGAACAA 60.238 38.462 3.54 0.00 37.32 2.83
2432 2541 7.137426 GCCTATGCATTAATCTGAAGAACAAG 58.863 38.462 3.54 0.00 37.47 3.16
2433 2542 7.201767 GCCTATGCATTAATCTGAAGAACAAGT 60.202 37.037 3.54 0.00 37.47 3.16
2434 2543 8.680903 CCTATGCATTAATCTGAAGAACAAGTT 58.319 33.333 3.54 0.00 0.00 2.66
2437 2546 8.389779 TGCATTAATCTGAAGAACAAGTTACA 57.610 30.769 0.00 0.00 0.00 2.41
2438 2547 8.845227 TGCATTAATCTGAAGAACAAGTTACAA 58.155 29.630 0.00 0.00 0.00 2.41
2439 2548 9.118236 GCATTAATCTGAAGAACAAGTTACAAC 57.882 33.333 0.00 0.00 0.00 3.32
2440 2549 9.612620 CATTAATCTGAAGAACAAGTTACAACC 57.387 33.333 0.00 0.00 0.00 3.77
2441 2550 8.740123 TTAATCTGAAGAACAAGTTACAACCA 57.260 30.769 0.00 0.00 0.00 3.67
2442 2551 7.823745 AATCTGAAGAACAAGTTACAACCAT 57.176 32.000 0.00 0.00 0.00 3.55
2443 2552 6.618287 TCTGAAGAACAAGTTACAACCATG 57.382 37.500 0.00 0.00 0.00 3.66
2444 2553 6.353323 TCTGAAGAACAAGTTACAACCATGA 58.647 36.000 0.00 0.00 0.00 3.07
2445 2554 6.998074 TCTGAAGAACAAGTTACAACCATGAT 59.002 34.615 0.00 0.00 0.00 2.45
2446 2555 7.502226 TCTGAAGAACAAGTTACAACCATGATT 59.498 33.333 0.00 0.00 0.00 2.57
2447 2556 8.006298 TGAAGAACAAGTTACAACCATGATTT 57.994 30.769 0.00 0.00 0.00 2.17
2448 2557 8.474025 TGAAGAACAAGTTACAACCATGATTTT 58.526 29.630 0.00 0.00 0.00 1.82
2449 2558 9.959749 GAAGAACAAGTTACAACCATGATTTTA 57.040 29.630 0.00 0.00 0.00 1.52
2450 2559 9.744468 AAGAACAAGTTACAACCATGATTTTAC 57.256 29.630 0.00 0.00 0.00 2.01
2451 2560 8.908903 AGAACAAGTTACAACCATGATTTTACA 58.091 29.630 0.00 0.00 0.00 2.41
2452 2561 9.522804 GAACAAGTTACAACCATGATTTTACAA 57.477 29.630 0.00 0.00 0.00 2.41
2454 2563 9.474920 ACAAGTTACAACCATGATTTTACAATG 57.525 29.630 0.00 0.00 0.00 2.82
2455 2564 9.474920 CAAGTTACAACCATGATTTTACAATGT 57.525 29.630 0.00 0.00 0.00 2.71
2456 2565 9.691362 AAGTTACAACCATGATTTTACAATGTC 57.309 29.630 0.00 0.00 0.00 3.06
2457 2566 9.077885 AGTTACAACCATGATTTTACAATGTCT 57.922 29.630 0.00 0.00 0.00 3.41
2458 2567 9.128107 GTTACAACCATGATTTTACAATGTCTG 57.872 33.333 0.00 0.00 0.00 3.51
2459 2568 7.523293 ACAACCATGATTTTACAATGTCTGA 57.477 32.000 0.00 0.00 0.00 3.27
2460 2569 8.125978 ACAACCATGATTTTACAATGTCTGAT 57.874 30.769 0.00 0.00 0.00 2.90
2461 2570 8.030692 ACAACCATGATTTTACAATGTCTGATG 58.969 33.333 0.00 0.00 0.00 3.07
2462 2571 7.707624 ACCATGATTTTACAATGTCTGATGT 57.292 32.000 0.00 0.00 0.00 3.06
2463 2572 8.125978 ACCATGATTTTACAATGTCTGATGTT 57.874 30.769 0.00 0.00 0.00 2.71
2464 2573 8.246180 ACCATGATTTTACAATGTCTGATGTTC 58.754 33.333 0.00 0.00 0.00 3.18
2465 2574 8.245491 CCATGATTTTACAATGTCTGATGTTCA 58.755 33.333 0.00 0.00 0.00 3.18
2466 2575 9.285770 CATGATTTTACAATGTCTGATGTTCAG 57.714 33.333 0.00 0.00 45.59 3.02
2477 2586 3.920231 TGATGTTCAGATTGCCTAGCT 57.080 42.857 0.00 0.00 0.00 3.32
2478 2587 4.226427 TGATGTTCAGATTGCCTAGCTT 57.774 40.909 0.00 0.00 0.00 3.74
2479 2588 4.194640 TGATGTTCAGATTGCCTAGCTTC 58.805 43.478 0.00 0.00 0.00 3.86
2480 2589 3.701205 TGTTCAGATTGCCTAGCTTCA 57.299 42.857 0.00 0.00 0.00 3.02
2481 2590 3.603532 TGTTCAGATTGCCTAGCTTCAG 58.396 45.455 0.00 0.00 0.00 3.02
2482 2591 3.261643 TGTTCAGATTGCCTAGCTTCAGA 59.738 43.478 0.00 0.00 0.00 3.27
2483 2592 4.256920 GTTCAGATTGCCTAGCTTCAGAA 58.743 43.478 0.00 0.00 0.00 3.02
2484 2593 4.134379 TCAGATTGCCTAGCTTCAGAAG 57.866 45.455 5.72 5.72 0.00 2.85
2493 2602 3.814577 GCTTCAGAAGCGTAGGACA 57.185 52.632 19.41 0.00 45.74 4.02
2494 2603 1.634702 GCTTCAGAAGCGTAGGACAG 58.365 55.000 19.41 0.00 45.74 3.51
2495 2604 1.067495 GCTTCAGAAGCGTAGGACAGT 60.067 52.381 19.41 0.00 45.74 3.55
2496 2605 2.600731 CTTCAGAAGCGTAGGACAGTG 58.399 52.381 0.00 0.00 0.00 3.66
2497 2606 1.905637 TCAGAAGCGTAGGACAGTGA 58.094 50.000 0.00 0.00 0.00 3.41
2498 2607 2.447443 TCAGAAGCGTAGGACAGTGAT 58.553 47.619 0.00 0.00 0.00 3.06
2499 2608 2.423892 TCAGAAGCGTAGGACAGTGATC 59.576 50.000 0.00 0.00 0.00 2.92
2500 2609 2.164422 CAGAAGCGTAGGACAGTGATCA 59.836 50.000 0.00 0.00 0.00 2.92
2501 2610 2.826128 AGAAGCGTAGGACAGTGATCAA 59.174 45.455 0.00 0.00 0.00 2.57
2502 2611 2.656560 AGCGTAGGACAGTGATCAAC 57.343 50.000 0.00 0.00 0.00 3.18
2503 2612 1.204941 AGCGTAGGACAGTGATCAACC 59.795 52.381 0.00 0.00 0.00 3.77
2504 2613 1.909376 CGTAGGACAGTGATCAACCG 58.091 55.000 0.00 0.00 0.00 4.44
2505 2614 1.471287 CGTAGGACAGTGATCAACCGA 59.529 52.381 0.00 0.00 0.00 4.69
2506 2615 2.478031 CGTAGGACAGTGATCAACCGAG 60.478 54.545 0.00 0.00 0.00 4.63
2507 2616 1.633774 AGGACAGTGATCAACCGAGT 58.366 50.000 0.00 0.00 0.00 4.18
2508 2617 1.273606 AGGACAGTGATCAACCGAGTG 59.726 52.381 0.00 0.00 0.00 3.51
2509 2618 1.272490 GGACAGTGATCAACCGAGTGA 59.728 52.381 0.00 0.00 0.00 3.41
2510 2619 2.600731 GACAGTGATCAACCGAGTGAG 58.399 52.381 0.00 0.00 0.00 3.51
2511 2620 2.229062 GACAGTGATCAACCGAGTGAGA 59.771 50.000 0.00 0.00 0.00 3.27
2512 2621 2.029828 ACAGTGATCAACCGAGTGAGAC 60.030 50.000 0.00 0.00 0.00 3.36
2513 2622 1.546476 AGTGATCAACCGAGTGAGACC 59.454 52.381 0.00 0.00 0.00 3.85
2514 2623 1.546476 GTGATCAACCGAGTGAGACCT 59.454 52.381 0.00 0.00 0.00 3.85
2515 2624 1.546029 TGATCAACCGAGTGAGACCTG 59.454 52.381 0.00 0.00 0.00 4.00
2516 2625 0.247736 ATCAACCGAGTGAGACCTGC 59.752 55.000 0.00 0.00 0.00 4.85
2517 2626 0.827925 TCAACCGAGTGAGACCTGCT 60.828 55.000 0.00 0.00 0.00 4.24
2518 2627 0.034059 CAACCGAGTGAGACCTGCTT 59.966 55.000 0.00 0.00 0.00 3.91
2519 2628 0.759346 AACCGAGTGAGACCTGCTTT 59.241 50.000 0.00 0.00 0.00 3.51
2520 2629 0.759346 ACCGAGTGAGACCTGCTTTT 59.241 50.000 0.00 0.00 0.00 2.27
2521 2630 1.968493 ACCGAGTGAGACCTGCTTTTA 59.032 47.619 0.00 0.00 0.00 1.52
2522 2631 2.288886 ACCGAGTGAGACCTGCTTTTAC 60.289 50.000 0.00 0.00 0.00 2.01
2523 2632 2.288825 CCGAGTGAGACCTGCTTTTACA 60.289 50.000 0.00 0.00 0.00 2.41
2524 2633 3.390135 CGAGTGAGACCTGCTTTTACAA 58.610 45.455 0.00 0.00 0.00 2.41
2525 2634 3.807622 CGAGTGAGACCTGCTTTTACAAA 59.192 43.478 0.00 0.00 0.00 2.83
2526 2635 4.318831 CGAGTGAGACCTGCTTTTACAAAC 60.319 45.833 0.00 0.00 0.00 2.93
2527 2636 3.883489 AGTGAGACCTGCTTTTACAAACC 59.117 43.478 0.00 0.00 0.00 3.27
2528 2637 3.630312 GTGAGACCTGCTTTTACAAACCA 59.370 43.478 0.00 0.00 0.00 3.67
2529 2638 4.278419 GTGAGACCTGCTTTTACAAACCAT 59.722 41.667 0.00 0.00 0.00 3.55
2530 2639 4.892934 TGAGACCTGCTTTTACAAACCATT 59.107 37.500 0.00 0.00 0.00 3.16
2531 2640 5.200368 AGACCTGCTTTTACAAACCATTG 57.800 39.130 0.00 0.00 42.46 2.82
2547 2656 8.786826 CAAACCATTGTAGGACTAGTATTTGA 57.213 34.615 0.00 0.00 0.00 2.69
2548 2657 9.396022 CAAACCATTGTAGGACTAGTATTTGAT 57.604 33.333 0.00 0.00 0.00 2.57
2549 2658 9.975218 AAACCATTGTAGGACTAGTATTTGATT 57.025 29.630 0.00 0.00 0.00 2.57
2550 2659 9.614792 AACCATTGTAGGACTAGTATTTGATTC 57.385 33.333 0.00 0.00 0.00 2.52
2551 2660 8.993424 ACCATTGTAGGACTAGTATTTGATTCT 58.007 33.333 0.00 0.00 0.00 2.40
2552 2661 9.265901 CCATTGTAGGACTAGTATTTGATTCTG 57.734 37.037 0.00 0.00 0.00 3.02
2555 2664 9.475620 TTGTAGGACTAGTATTTGATTCTGAGA 57.524 33.333 0.00 0.00 0.00 3.27
2556 2665 9.475620 TGTAGGACTAGTATTTGATTCTGAGAA 57.524 33.333 0.00 0.00 0.00 2.87
2557 2666 9.959749 GTAGGACTAGTATTTGATTCTGAGAAG 57.040 37.037 0.00 0.00 0.00 2.85
2558 2667 8.602472 AGGACTAGTATTTGATTCTGAGAAGT 57.398 34.615 0.00 0.00 0.00 3.01
2559 2668 9.702253 AGGACTAGTATTTGATTCTGAGAAGTA 57.298 33.333 0.00 0.00 0.00 2.24
2562 2671 9.757227 ACTAGTATTTGATTCTGAGAAGTATGC 57.243 33.333 0.00 0.00 0.00 3.14
2563 2672 9.979578 CTAGTATTTGATTCTGAGAAGTATGCT 57.020 33.333 0.00 3.42 0.00 3.79
2564 2673 8.885494 AGTATTTGATTCTGAGAAGTATGCTC 57.115 34.615 0.00 0.00 42.95 4.26
2565 2674 8.703743 AGTATTTGATTCTGAGAAGTATGCTCT 58.296 33.333 0.00 0.00 43.11 4.09
2566 2675 9.973450 GTATTTGATTCTGAGAAGTATGCTCTA 57.027 33.333 0.00 0.00 43.11 2.43
2568 2677 6.083098 TGATTCTGAGAAGTATGCTCTAGC 57.917 41.667 0.00 0.00 43.11 3.42
2569 2678 4.927978 TTCTGAGAAGTATGCTCTAGCC 57.072 45.455 0.00 0.00 43.11 3.93
2570 2679 2.881513 TCTGAGAAGTATGCTCTAGCCG 59.118 50.000 0.00 0.00 43.11 5.52
2571 2680 1.338337 TGAGAAGTATGCTCTAGCCGC 59.662 52.381 0.00 0.00 43.11 6.53
2572 2681 1.338337 GAGAAGTATGCTCTAGCCGCA 59.662 52.381 8.64 8.64 37.97 5.69
2573 2682 4.563538 TGAGAAGTATGCTCTAGCCGCAT 61.564 47.826 18.92 18.92 43.11 4.73
2574 2683 2.366916 AGAAGTATGCTCTAGCCGCATT 59.633 45.455 19.77 7.48 45.18 3.56
2575 2684 2.160822 AGTATGCTCTAGCCGCATTG 57.839 50.000 19.77 0.00 45.18 2.82
2576 2685 1.414181 AGTATGCTCTAGCCGCATTGT 59.586 47.619 19.77 8.79 45.18 2.71
2577 2686 2.158900 AGTATGCTCTAGCCGCATTGTT 60.159 45.455 19.77 7.64 45.18 2.83
2578 2687 1.019673 ATGCTCTAGCCGCATTGTTG 58.980 50.000 11.96 0.00 45.18 3.33
2579 2688 0.321564 TGCTCTAGCCGCATTGTTGT 60.322 50.000 0.00 0.00 41.18 3.32
2580 2689 0.097674 GCTCTAGCCGCATTGTTGTG 59.902 55.000 0.00 0.00 34.31 3.33
2581 2690 1.725641 CTCTAGCCGCATTGTTGTGA 58.274 50.000 0.00 0.00 35.26 3.58
2582 2691 1.662629 CTCTAGCCGCATTGTTGTGAG 59.337 52.381 0.00 0.00 35.26 3.51
2583 2692 0.097674 CTAGCCGCATTGTTGTGAGC 59.902 55.000 0.00 0.00 35.26 4.26
2584 2693 1.305219 TAGCCGCATTGTTGTGAGCC 61.305 55.000 0.00 0.00 35.26 4.70
2585 2694 2.568090 CCGCATTGTTGTGAGCCC 59.432 61.111 0.00 0.00 35.26 5.19
2586 2695 1.973281 CCGCATTGTTGTGAGCCCT 60.973 57.895 0.00 0.00 35.26 5.19
2587 2696 0.676466 CCGCATTGTTGTGAGCCCTA 60.676 55.000 0.00 0.00 35.26 3.53
2588 2697 0.447801 CGCATTGTTGTGAGCCCTAC 59.552 55.000 0.00 0.00 35.26 3.18
2589 2698 1.826385 GCATTGTTGTGAGCCCTACT 58.174 50.000 0.00 0.00 0.00 2.57
2590 2699 2.676750 CGCATTGTTGTGAGCCCTACTA 60.677 50.000 0.00 0.00 35.26 1.82
2591 2700 3.545703 GCATTGTTGTGAGCCCTACTAT 58.454 45.455 0.00 0.00 0.00 2.12
2592 2701 3.947834 GCATTGTTGTGAGCCCTACTATT 59.052 43.478 0.00 0.00 0.00 1.73
2593 2702 5.123227 GCATTGTTGTGAGCCCTACTATTA 58.877 41.667 0.00 0.00 0.00 0.98
2594 2703 5.588648 GCATTGTTGTGAGCCCTACTATTAA 59.411 40.000 0.00 0.00 0.00 1.40
2595 2704 6.238484 GCATTGTTGTGAGCCCTACTATTAAG 60.238 42.308 0.00 0.00 0.00 1.85
2596 2705 4.766375 TGTTGTGAGCCCTACTATTAAGC 58.234 43.478 0.00 0.00 0.00 3.09
2597 2706 4.469945 TGTTGTGAGCCCTACTATTAAGCT 59.530 41.667 0.00 0.00 36.25 3.74
2602 2711 4.888917 GAGCCCTACTATTAAGCTCCTTG 58.111 47.826 0.00 0.00 43.27 3.61
2603 2712 3.648545 AGCCCTACTATTAAGCTCCTTGG 59.351 47.826 0.00 0.00 0.00 3.61
2604 2713 3.244596 GCCCTACTATTAAGCTCCTTGGG 60.245 52.174 0.00 0.00 0.00 4.12
2605 2714 4.232091 CCCTACTATTAAGCTCCTTGGGA 58.768 47.826 0.00 0.00 33.14 4.37
2606 2715 4.658901 CCCTACTATTAAGCTCCTTGGGAA 59.341 45.833 0.00 0.00 33.14 3.97
2607 2716 5.310857 CCCTACTATTAAGCTCCTTGGGAAT 59.689 44.000 0.00 0.00 33.14 3.01
2608 2717 6.234177 CCTACTATTAAGCTCCTTGGGAATG 58.766 44.000 0.00 0.00 0.00 2.67
2609 2718 5.717119 ACTATTAAGCTCCTTGGGAATGT 57.283 39.130 0.00 0.00 0.00 2.71
2610 2719 5.440610 ACTATTAAGCTCCTTGGGAATGTG 58.559 41.667 0.00 0.00 0.00 3.21
2611 2720 3.806949 TTAAGCTCCTTGGGAATGTGT 57.193 42.857 0.00 0.00 0.00 3.72
2612 2721 2.206576 AAGCTCCTTGGGAATGTGTC 57.793 50.000 0.00 0.00 0.00 3.67
2613 2722 1.366319 AGCTCCTTGGGAATGTGTCT 58.634 50.000 0.00 0.00 0.00 3.41
2614 2723 2.551270 AGCTCCTTGGGAATGTGTCTA 58.449 47.619 0.00 0.00 0.00 2.59
2615 2724 2.912956 AGCTCCTTGGGAATGTGTCTAA 59.087 45.455 0.00 0.00 0.00 2.10
2616 2725 3.010420 GCTCCTTGGGAATGTGTCTAAC 58.990 50.000 0.00 0.00 0.00 2.34
2617 2726 3.262420 CTCCTTGGGAATGTGTCTAACG 58.738 50.000 0.00 0.00 0.00 3.18
2618 2727 2.027561 TCCTTGGGAATGTGTCTAACGG 60.028 50.000 0.00 0.00 0.00 4.44
2619 2728 2.290071 CCTTGGGAATGTGTCTAACGGT 60.290 50.000 0.00 0.00 0.00 4.83
2620 2729 3.408634 CTTGGGAATGTGTCTAACGGTT 58.591 45.455 0.00 0.00 0.00 4.44
2621 2730 4.563993 CCTTGGGAATGTGTCTAACGGTTA 60.564 45.833 0.00 0.00 0.00 2.85
2622 2731 4.829872 TGGGAATGTGTCTAACGGTTAT 57.170 40.909 0.29 0.00 0.00 1.89
2623 2732 4.761975 TGGGAATGTGTCTAACGGTTATC 58.238 43.478 0.29 0.00 0.00 1.75
2624 2733 4.468510 TGGGAATGTGTCTAACGGTTATCT 59.531 41.667 0.29 0.00 0.00 1.98
2625 2734 4.809426 GGGAATGTGTCTAACGGTTATCTG 59.191 45.833 0.29 0.00 0.00 2.90
2626 2735 5.394883 GGGAATGTGTCTAACGGTTATCTGA 60.395 44.000 0.29 0.00 0.00 3.27
2627 2736 5.749109 GGAATGTGTCTAACGGTTATCTGAG 59.251 44.000 0.29 0.00 0.00 3.35
2628 2737 4.106029 TGTGTCTAACGGTTATCTGAGC 57.894 45.455 0.29 0.00 0.00 4.26
2629 2738 3.119245 TGTGTCTAACGGTTATCTGAGCC 60.119 47.826 0.29 0.00 0.00 4.70
2630 2739 3.130693 GTGTCTAACGGTTATCTGAGCCT 59.869 47.826 0.29 0.00 0.00 4.58
2631 2740 3.767673 TGTCTAACGGTTATCTGAGCCTT 59.232 43.478 0.29 0.00 0.00 4.35
2632 2741 4.113354 GTCTAACGGTTATCTGAGCCTTG 58.887 47.826 0.29 0.00 0.00 3.61
2633 2742 1.739067 AACGGTTATCTGAGCCTTGC 58.261 50.000 0.00 0.00 0.00 4.01
2634 2743 0.905357 ACGGTTATCTGAGCCTTGCT 59.095 50.000 0.00 0.00 43.88 3.91
2635 2744 2.108168 ACGGTTATCTGAGCCTTGCTA 58.892 47.619 0.00 0.00 39.88 3.49
2636 2745 2.101582 ACGGTTATCTGAGCCTTGCTAG 59.898 50.000 0.00 0.00 39.88 3.42
2637 2746 2.101582 CGGTTATCTGAGCCTTGCTAGT 59.898 50.000 0.00 0.00 39.88 2.57
2638 2747 3.318275 CGGTTATCTGAGCCTTGCTAGTA 59.682 47.826 0.00 0.00 39.88 1.82
2639 2748 4.557695 CGGTTATCTGAGCCTTGCTAGTAG 60.558 50.000 0.00 0.00 39.88 2.57
2640 2749 4.585162 GGTTATCTGAGCCTTGCTAGTAGA 59.415 45.833 0.00 0.00 39.88 2.59
2641 2750 5.278758 GGTTATCTGAGCCTTGCTAGTAGAG 60.279 48.000 0.00 0.00 39.88 2.43
2657 2766 7.849804 CTAGTAGAGCTAAAGAAATTTGCCA 57.150 36.000 0.00 0.00 40.12 4.92
2658 2767 6.749923 AGTAGAGCTAAAGAAATTTGCCAG 57.250 37.500 0.00 0.00 40.12 4.85
2659 2768 6.241645 AGTAGAGCTAAAGAAATTTGCCAGT 58.758 36.000 0.00 0.00 40.12 4.00
2660 2769 6.717084 AGTAGAGCTAAAGAAATTTGCCAGTT 59.283 34.615 0.00 0.00 40.12 3.16
2661 2770 5.776744 AGAGCTAAAGAAATTTGCCAGTTG 58.223 37.500 0.00 0.00 40.12 3.16
2662 2771 4.886579 AGCTAAAGAAATTTGCCAGTTGG 58.113 39.130 0.00 0.00 40.12 3.77
2675 2784 2.924421 CCAGTTGGCTTCTAATCTCCC 58.076 52.381 0.00 0.00 0.00 4.30
2676 2785 2.239654 CCAGTTGGCTTCTAATCTCCCA 59.760 50.000 0.00 0.00 0.00 4.37
2677 2786 3.308402 CCAGTTGGCTTCTAATCTCCCAA 60.308 47.826 0.00 0.00 33.47 4.12
2678 2787 4.530875 CAGTTGGCTTCTAATCTCCCAAT 58.469 43.478 0.00 0.00 37.82 3.16
2679 2788 4.337555 CAGTTGGCTTCTAATCTCCCAATG 59.662 45.833 0.00 0.00 37.82 2.82
2680 2789 4.228210 AGTTGGCTTCTAATCTCCCAATGA 59.772 41.667 0.00 0.00 37.82 2.57
2681 2790 4.156455 TGGCTTCTAATCTCCCAATGAC 57.844 45.455 0.00 0.00 0.00 3.06
2682 2791 3.117888 TGGCTTCTAATCTCCCAATGACC 60.118 47.826 0.00 0.00 0.00 4.02
2683 2792 3.117888 GGCTTCTAATCTCCCAATGACCA 60.118 47.826 0.00 0.00 0.00 4.02
2684 2793 4.133078 GCTTCTAATCTCCCAATGACCAG 58.867 47.826 0.00 0.00 0.00 4.00
2685 2794 4.712476 CTTCTAATCTCCCAATGACCAGG 58.288 47.826 0.00 0.00 0.00 4.45
2686 2795 3.736094 TCTAATCTCCCAATGACCAGGT 58.264 45.455 0.00 0.00 0.00 4.00
2687 2796 3.711704 TCTAATCTCCCAATGACCAGGTC 59.288 47.826 13.35 13.35 0.00 3.85
2688 2797 1.971149 ATCTCCCAATGACCAGGTCA 58.029 50.000 25.06 25.06 46.90 4.02
2702 2811 7.067496 TGACCAGGTCATTTAAGGATATCTC 57.933 40.000 19.21 0.00 37.67 2.75
2703 2812 6.846505 TGACCAGGTCATTTAAGGATATCTCT 59.153 38.462 19.21 0.00 37.67 3.10
2704 2813 7.348274 TGACCAGGTCATTTAAGGATATCTCTT 59.652 37.037 19.21 7.11 37.67 2.85
2705 2814 7.512992 ACCAGGTCATTTAAGGATATCTCTTG 58.487 38.462 13.60 2.27 0.00 3.02
2706 2815 6.429385 CCAGGTCATTTAAGGATATCTCTTGC 59.571 42.308 13.60 0.00 0.00 4.01
2707 2816 7.222872 CAGGTCATTTAAGGATATCTCTTGCT 58.777 38.462 13.60 0.00 0.00 3.91
2708 2817 7.718753 CAGGTCATTTAAGGATATCTCTTGCTT 59.281 37.037 13.60 6.57 0.00 3.91
2709 2818 7.718753 AGGTCATTTAAGGATATCTCTTGCTTG 59.281 37.037 13.60 9.33 0.00 4.01
2710 2819 7.500559 GGTCATTTAAGGATATCTCTTGCTTGT 59.499 37.037 13.60 0.00 0.00 3.16
2711 2820 8.341173 GTCATTTAAGGATATCTCTTGCTTGTG 58.659 37.037 13.60 5.87 0.00 3.33
2712 2821 6.683974 TTTAAGGATATCTCTTGCTTGTGC 57.316 37.500 13.60 0.00 40.20 4.57
2722 2831 2.049433 GCTTGTGCAGCCTGCTTG 60.049 61.111 18.96 6.37 45.31 4.01
2723 2832 2.853290 GCTTGTGCAGCCTGCTTGT 61.853 57.895 18.96 0.00 45.31 3.16
2724 2833 1.518056 GCTTGTGCAGCCTGCTTGTA 61.518 55.000 18.96 0.00 45.31 2.41
2725 2834 0.239347 CTTGTGCAGCCTGCTTGTAC 59.761 55.000 18.96 8.10 45.31 2.90
2726 2835 0.465278 TTGTGCAGCCTGCTTGTACA 60.465 50.000 18.96 10.84 45.31 2.90
2727 2836 0.250858 TGTGCAGCCTGCTTGTACAT 60.251 50.000 18.96 0.00 45.31 2.29
2728 2837 0.883833 GTGCAGCCTGCTTGTACATT 59.116 50.000 18.96 0.00 45.31 2.71
2729 2838 1.270550 GTGCAGCCTGCTTGTACATTT 59.729 47.619 18.96 0.00 45.31 2.32
2730 2839 2.487762 GTGCAGCCTGCTTGTACATTTA 59.512 45.455 18.96 0.00 45.31 1.40
2731 2840 2.749076 TGCAGCCTGCTTGTACATTTAG 59.251 45.455 18.96 0.00 45.31 1.85
2732 2841 2.478539 GCAGCCTGCTTGTACATTTAGC 60.479 50.000 10.04 10.50 40.96 3.09
2733 2842 2.749076 CAGCCTGCTTGTACATTTAGCA 59.251 45.455 17.48 17.48 42.22 3.49
2734 2843 3.379372 CAGCCTGCTTGTACATTTAGCAT 59.621 43.478 18.49 4.40 43.33 3.79
2735 2844 3.379372 AGCCTGCTTGTACATTTAGCATG 59.621 43.478 18.49 16.68 43.33 4.06
2736 2845 3.378112 GCCTGCTTGTACATTTAGCATGA 59.622 43.478 20.73 3.00 43.33 3.07
2737 2846 4.142403 GCCTGCTTGTACATTTAGCATGAA 60.142 41.667 20.73 2.72 43.33 2.57
2738 2847 5.622007 GCCTGCTTGTACATTTAGCATGAAA 60.622 40.000 20.73 2.42 43.33 2.69
2739 2848 6.032094 CCTGCTTGTACATTTAGCATGAAAG 58.968 40.000 18.49 8.61 43.33 2.62
2740 2849 5.953183 TGCTTGTACATTTAGCATGAAAGG 58.047 37.500 15.15 0.00 39.79 3.11
2741 2850 5.709631 TGCTTGTACATTTAGCATGAAAGGA 59.290 36.000 15.15 0.00 39.79 3.36
2742 2851 6.030228 GCTTGTACATTTAGCATGAAAGGAC 58.970 40.000 12.19 0.00 35.05 3.85
2743 2852 6.349280 GCTTGTACATTTAGCATGAAAGGACA 60.349 38.462 12.19 0.00 35.05 4.02
2744 2853 7.629222 GCTTGTACATTTAGCATGAAAGGACAT 60.629 37.037 12.19 0.00 35.05 3.06
2745 2854 7.701539 TGTACATTTAGCATGAAAGGACATT 57.298 32.000 0.00 0.00 0.00 2.71
2746 2855 7.761409 TGTACATTTAGCATGAAAGGACATTC 58.239 34.615 0.00 0.00 0.00 2.67
2747 2856 6.212888 ACATTTAGCATGAAAGGACATTCC 57.787 37.500 0.00 0.00 36.58 3.01
2759 2868 2.076863 GGACATTCCTGAAAGTCGTGG 58.923 52.381 8.61 0.00 39.23 4.94
2760 2869 2.289444 GGACATTCCTGAAAGTCGTGGA 60.289 50.000 8.61 0.00 39.23 4.02
2761 2870 3.399330 GACATTCCTGAAAGTCGTGGAA 58.601 45.455 0.15 0.00 41.96 3.53
2762 2871 3.813166 GACATTCCTGAAAGTCGTGGAAA 59.187 43.478 0.00 0.00 41.22 3.13
2763 2872 4.204012 ACATTCCTGAAAGTCGTGGAAAA 58.796 39.130 0.00 0.00 41.22 2.29
2764 2873 4.642885 ACATTCCTGAAAGTCGTGGAAAAA 59.357 37.500 0.00 0.00 41.22 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 102 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
136 140 7.676947 AGTGTCTCAAGCCTAGTACAATTTTA 58.323 34.615 0.00 0.00 0.00 1.52
143 147 9.649167 TTAAAATAAGTGTCTCAAGCCTAGTAC 57.351 33.333 0.00 0.00 0.00 2.73
146 150 9.827411 GTTTTAAAATAAGTGTCTCAAGCCTAG 57.173 33.333 3.52 0.00 0.00 3.02
149 153 6.581166 CCGTTTTAAAATAAGTGTCTCAAGCC 59.419 38.462 3.52 0.00 0.00 4.35
156 160 6.429078 ACTCCCTCCGTTTTAAAATAAGTGTC 59.571 38.462 3.52 0.00 0.00 3.67
157 161 6.301486 ACTCCCTCCGTTTTAAAATAAGTGT 58.699 36.000 3.52 0.01 0.00 3.55
169 173 6.268617 AGTTTTAGTTAGTACTCCCTCCGTTT 59.731 38.462 0.00 0.00 35.78 3.60
170 174 5.777223 AGTTTTAGTTAGTACTCCCTCCGTT 59.223 40.000 0.00 0.00 35.78 4.44
172 176 5.911378 AGTTTTAGTTAGTACTCCCTCCG 57.089 43.478 0.00 0.00 35.78 4.63
225 233 0.460311 ATACCCTCGAACAGGCTTCG 59.540 55.000 2.21 2.21 41.80 3.79
283 291 7.609760 ATTTCGACACTACAGATAAATGCAA 57.390 32.000 0.00 0.00 0.00 4.08
292 300 3.990092 AGTGCAATTTCGACACTACAGA 58.010 40.909 3.97 0.00 42.65 3.41
294 302 3.678072 GCTAGTGCAATTTCGACACTACA 59.322 43.478 8.34 0.00 42.65 2.74
299 307 1.448985 GGGCTAGTGCAATTTCGACA 58.551 50.000 0.00 0.00 41.91 4.35
302 310 1.326548 GTACGGGCTAGTGCAATTTCG 59.673 52.381 0.00 0.00 41.91 3.46
303 311 1.669265 GGTACGGGCTAGTGCAATTTC 59.331 52.381 0.00 0.00 41.91 2.17
321 329 1.080298 CGTTTTCCTAGACGCGGGT 60.080 57.895 12.47 4.12 32.11 5.28
329 337 4.862574 GCTTAAATTTGGCCGTTTTCCTAG 59.137 41.667 0.00 0.00 0.00 3.02
333 341 5.390461 GGAATGCTTAAATTTGGCCGTTTTC 60.390 40.000 0.00 6.33 0.00 2.29
343 351 2.418609 GCCGCCAGGAATGCTTAAATTT 60.419 45.455 0.00 0.00 41.02 1.82
351 359 4.802051 TCAGGCCGCCAGGAATGC 62.802 66.667 13.15 0.00 41.02 3.56
353 361 1.271840 TTAGTCAGGCCGCCAGGAAT 61.272 55.000 13.15 10.53 41.02 3.01
363 371 2.079925 CAAAGCACTCCTTAGTCAGGC 58.920 52.381 0.00 0.00 43.55 4.85
371 379 2.614057 CGTGAAACTCAAAGCACTCCTT 59.386 45.455 0.00 0.00 31.24 3.36
374 382 1.657538 CGCGTGAAACTCAAAGCACTC 60.658 52.381 0.00 0.00 33.67 3.51
383 391 4.400036 AAAACTAATCCGCGTGAAACTC 57.600 40.909 4.92 0.00 31.75 3.01
409 417 1.339535 TGTTTGGCTGTGTGACACTCA 60.340 47.619 17.47 8.64 35.11 3.41
410 418 1.378531 TGTTTGGCTGTGTGACACTC 58.621 50.000 17.47 8.48 35.11 3.51
411 419 1.472480 GTTGTTTGGCTGTGTGACACT 59.528 47.619 17.47 0.00 35.11 3.55
413 421 1.742831 GAGTTGTTTGGCTGTGTGACA 59.257 47.619 0.00 0.00 0.00 3.58
415 423 2.016318 CTGAGTTGTTTGGCTGTGTGA 58.984 47.619 0.00 0.00 0.00 3.58
418 426 3.996150 AATCTGAGTTGTTTGGCTGTG 57.004 42.857 0.00 0.00 0.00 3.66
419 427 4.022849 GCTAAATCTGAGTTGTTTGGCTGT 60.023 41.667 0.00 0.00 36.69 4.40
422 430 4.229876 GTGCTAAATCTGAGTTGTTTGGC 58.770 43.478 0.00 2.13 39.04 4.52
445 453 5.490159 CATCAAGCCCAACCAAATTGTAAT 58.510 37.500 0.00 0.00 36.47 1.89
452 460 1.126488 TTGCATCAAGCCCAACCAAA 58.874 45.000 0.00 0.00 44.83 3.28
465 473 4.868171 TCTACGTGTTTGGTAGATTGCATC 59.132 41.667 0.00 0.00 40.94 3.91
571 590 5.353394 AGTGCGGTGGATTCTCTTAATTA 57.647 39.130 0.00 0.00 0.00 1.40
572 591 4.222124 AGTGCGGTGGATTCTCTTAATT 57.778 40.909 0.00 0.00 0.00 1.40
573 592 3.914426 AGTGCGGTGGATTCTCTTAAT 57.086 42.857 0.00 0.00 0.00 1.40
574 593 3.695830 AAGTGCGGTGGATTCTCTTAA 57.304 42.857 0.00 0.00 0.00 1.85
687 733 9.968743 GTCACTTAAAACTGCACATAGTAATAC 57.031 33.333 0.00 0.00 0.00 1.89
714 760 9.970395 GTTTGGATGCAATATTCATAATTCTCA 57.030 29.630 0.00 0.00 0.00 3.27
731 777 3.623060 TCTGCTAATCTTCGTTTGGATGC 59.377 43.478 0.00 0.00 0.00 3.91
800 848 1.635487 TGGATTGCCTAGGTTGCTTCT 59.365 47.619 11.31 0.00 34.31 2.85
852 900 3.226777 AGGTGAGATGGAAGTAGATCGG 58.773 50.000 0.00 0.00 0.00 4.18
1191 1243 2.284921 TGCTCCTCCTCCTGGGTG 60.285 66.667 0.00 0.00 36.25 4.61
1194 1246 1.462731 CGATCTGCTCCTCCTCCTGG 61.463 65.000 0.00 0.00 0.00 4.45
1247 1299 2.089349 GCGAAGACAGTGAGACCGC 61.089 63.158 0.00 3.03 0.00 5.68
1437 1489 0.038892 TGACGTTGAGCGGGTACTTC 60.039 55.000 0.00 0.00 46.52 3.01
1741 1799 2.821366 GGCCACCATGCAGAGACG 60.821 66.667 0.00 0.00 0.00 4.18
1832 1890 7.498900 AGAAAAGGGAAAATCAAAACATCCAAC 59.501 33.333 0.00 0.00 31.63 3.77
1911 1969 9.804758 ACACCGAAGAAAAACATAAACATAAAA 57.195 25.926 0.00 0.00 0.00 1.52
1912 1970 9.239002 CACACCGAAGAAAAACATAAACATAAA 57.761 29.630 0.00 0.00 0.00 1.40
1913 1971 8.407064 ACACACCGAAGAAAAACATAAACATAA 58.593 29.630 0.00 0.00 0.00 1.90
1914 1972 7.932335 ACACACCGAAGAAAAACATAAACATA 58.068 30.769 0.00 0.00 0.00 2.29
1915 1973 6.801575 ACACACCGAAGAAAAACATAAACAT 58.198 32.000 0.00 0.00 0.00 2.71
1916 1974 6.197364 ACACACCGAAGAAAAACATAAACA 57.803 33.333 0.00 0.00 0.00 2.83
1917 1975 6.528774 ACAACACACCGAAGAAAAACATAAAC 59.471 34.615 0.00 0.00 0.00 2.01
1918 1976 6.622549 ACAACACACCGAAGAAAAACATAAA 58.377 32.000 0.00 0.00 0.00 1.40
1919 1977 6.197364 ACAACACACCGAAGAAAAACATAA 57.803 33.333 0.00 0.00 0.00 1.90
1920 1978 5.821516 ACAACACACCGAAGAAAAACATA 57.178 34.783 0.00 0.00 0.00 2.29
1921 1979 4.712122 ACAACACACCGAAGAAAAACAT 57.288 36.364 0.00 0.00 0.00 2.71
1922 1980 4.216687 AGAACAACACACCGAAGAAAAACA 59.783 37.500 0.00 0.00 0.00 2.83
1923 1981 4.729595 AGAACAACACACCGAAGAAAAAC 58.270 39.130 0.00 0.00 0.00 2.43
1924 1982 5.379732 AAGAACAACACACCGAAGAAAAA 57.620 34.783 0.00 0.00 0.00 1.94
1925 1983 4.436317 CGAAGAACAACACACCGAAGAAAA 60.436 41.667 0.00 0.00 0.00 2.29
1926 1984 3.062909 CGAAGAACAACACACCGAAGAAA 59.937 43.478 0.00 0.00 0.00 2.52
1927 1985 2.605818 CGAAGAACAACACACCGAAGAA 59.394 45.455 0.00 0.00 0.00 2.52
1928 1986 2.198406 CGAAGAACAACACACCGAAGA 58.802 47.619 0.00 0.00 0.00 2.87
1929 1987 1.931172 ACGAAGAACAACACACCGAAG 59.069 47.619 0.00 0.00 0.00 3.79
1993 2053 2.712057 ACTGACCGAAACGTTACGAT 57.288 45.000 13.03 0.00 0.00 3.73
2097 2204 5.789710 TCGTTTAATTGAACCCGATTCTC 57.210 39.130 7.45 0.00 38.25 2.87
2103 2210 4.854839 GGTTTCATCGTTTAATTGAACCCG 59.145 41.667 7.45 0.00 0.00 5.28
2104 2213 5.631929 GTGGTTTCATCGTTTAATTGAACCC 59.368 40.000 7.45 2.28 33.81 4.11
2130 2239 2.494059 ACTGTTTGAGACCGTGGATTG 58.506 47.619 0.00 0.00 0.00 2.67
2171 2280 5.304686 TCAAGAGGTGGTTGATGTAACTT 57.695 39.130 0.00 0.00 39.31 2.66
2173 2282 8.421784 TCTATATCAAGAGGTGGTTGATGTAAC 58.578 37.037 8.28 0.00 43.11 2.50
2174 2283 8.547481 TCTATATCAAGAGGTGGTTGATGTAA 57.453 34.615 8.28 0.00 43.11 2.41
2177 2286 7.295322 TCTCTATATCAAGAGGTGGTTGATG 57.705 40.000 8.28 0.00 43.11 3.07
2179 2288 7.733773 TTTCTCTATATCAAGAGGTGGTTGA 57.266 36.000 3.23 0.00 42.78 3.18
2180 2289 8.669243 GTTTTTCTCTATATCAAGAGGTGGTTG 58.331 37.037 3.23 0.00 42.78 3.77
2181 2290 8.383175 TGTTTTTCTCTATATCAAGAGGTGGTT 58.617 33.333 3.23 0.00 42.78 3.67
2182 2291 7.918076 TGTTTTTCTCTATATCAAGAGGTGGT 58.082 34.615 3.23 0.00 42.78 4.16
2183 2292 8.043710 ACTGTTTTTCTCTATATCAAGAGGTGG 58.956 37.037 3.23 0.00 42.78 4.61
2184 2293 9.442047 AACTGTTTTTCTCTATATCAAGAGGTG 57.558 33.333 3.23 0.00 42.78 4.00
2194 2303 9.158233 CCGTGGATTTAACTGTTTTTCTCTATA 57.842 33.333 0.00 0.00 0.00 1.31
2195 2304 7.664318 ACCGTGGATTTAACTGTTTTTCTCTAT 59.336 33.333 0.00 0.00 0.00 1.98
2196 2305 6.993902 ACCGTGGATTTAACTGTTTTTCTCTA 59.006 34.615 0.00 0.00 0.00 2.43
2197 2306 5.826208 ACCGTGGATTTAACTGTTTTTCTCT 59.174 36.000 0.00 0.00 0.00 3.10
2198 2307 6.017357 AGACCGTGGATTTAACTGTTTTTCTC 60.017 38.462 0.00 0.00 0.00 2.87
2199 2308 5.826208 AGACCGTGGATTTAACTGTTTTTCT 59.174 36.000 0.00 0.00 0.00 2.52
2200 2309 6.068473 AGACCGTGGATTTAACTGTTTTTC 57.932 37.500 0.00 0.00 0.00 2.29
2215 2324 5.121768 CCTTAAGTAATGTTGAAGACCGTGG 59.878 44.000 0.97 0.00 0.00 4.94
2232 2341 0.038310 GAACCCCTGCTGCCTTAAGT 59.962 55.000 0.97 0.00 0.00 2.24
2235 2344 0.840288 TGAGAACCCCTGCTGCCTTA 60.840 55.000 0.00 0.00 0.00 2.69
2264 2373 2.208074 CTCGCGAGCAAATACTCCG 58.792 57.895 25.07 0.00 32.79 4.63
2278 2387 6.589830 TCATAAGAAAGTATTTGAGCTCGC 57.410 37.500 9.64 0.00 39.27 5.03
2344 2453 6.262273 AGAAGTTTACCGCAAAAGAATCAGAA 59.738 34.615 0.00 0.00 0.00 3.02
2352 2461 7.924103 AAATTGTAGAAGTTTACCGCAAAAG 57.076 32.000 0.00 0.00 0.00 2.27
2381 2490 0.321298 GGCGCCACTTCTTTGTCCTA 60.321 55.000 24.80 0.00 0.00 2.94
2382 2491 1.600916 GGCGCCACTTCTTTGTCCT 60.601 57.895 24.80 0.00 0.00 3.85
2383 2492 1.172812 AAGGCGCCACTTCTTTGTCC 61.173 55.000 31.54 0.00 0.00 4.02
2384 2493 1.464997 CTAAGGCGCCACTTCTTTGTC 59.535 52.381 31.54 0.00 32.02 3.18
2385 2494 1.523758 CTAAGGCGCCACTTCTTTGT 58.476 50.000 31.54 0.00 32.02 2.83
2386 2495 0.804989 CCTAAGGCGCCACTTCTTTG 59.195 55.000 31.54 14.22 32.02 2.77
2387 2496 0.960861 GCCTAAGGCGCCACTTCTTT 60.961 55.000 31.54 15.69 39.62 2.52
2388 2497 1.377333 GCCTAAGGCGCCACTTCTT 60.377 57.895 31.54 16.50 39.62 2.52
2389 2498 2.269241 GCCTAAGGCGCCACTTCT 59.731 61.111 31.54 3.61 39.62 2.85
2398 2507 0.890996 AATGCATAGGCGCCTAAGGC 60.891 55.000 37.25 37.25 46.75 4.35
2399 2508 2.472695 TAATGCATAGGCGCCTAAGG 57.527 50.000 38.14 31.22 45.35 2.69
2400 2509 4.093998 CAGATTAATGCATAGGCGCCTAAG 59.906 45.833 38.14 33.71 45.35 2.18
2401 2510 4.002982 CAGATTAATGCATAGGCGCCTAA 58.997 43.478 38.14 23.69 45.35 2.69
2402 2511 3.260632 TCAGATTAATGCATAGGCGCCTA 59.739 43.478 36.88 36.88 45.35 3.93
2403 2512 2.038952 TCAGATTAATGCATAGGCGCCT 59.961 45.455 34.85 34.85 45.35 5.52
2404 2513 2.426522 TCAGATTAATGCATAGGCGCC 58.573 47.619 21.89 21.89 45.35 6.53
2405 2514 3.748048 TCTTCAGATTAATGCATAGGCGC 59.252 43.478 0.00 0.00 45.35 6.53
2406 2515 5.237127 TGTTCTTCAGATTAATGCATAGGCG 59.763 40.000 0.00 0.00 45.35 5.52
2407 2516 6.624352 TGTTCTTCAGATTAATGCATAGGC 57.376 37.500 0.00 0.00 41.68 3.93
2408 2517 8.218338 ACTTGTTCTTCAGATTAATGCATAGG 57.782 34.615 0.00 0.00 0.00 2.57
2411 2520 9.013229 TGTAACTTGTTCTTCAGATTAATGCAT 57.987 29.630 0.00 0.00 0.00 3.96
2412 2521 8.389779 TGTAACTTGTTCTTCAGATTAATGCA 57.610 30.769 0.00 0.00 0.00 3.96
2413 2522 9.118236 GTTGTAACTTGTTCTTCAGATTAATGC 57.882 33.333 0.00 0.00 0.00 3.56
2414 2523 9.612620 GGTTGTAACTTGTTCTTCAGATTAATG 57.387 33.333 0.00 0.00 0.00 1.90
2415 2524 9.349713 TGGTTGTAACTTGTTCTTCAGATTAAT 57.650 29.630 0.00 0.00 0.00 1.40
2416 2525 8.740123 TGGTTGTAACTTGTTCTTCAGATTAA 57.260 30.769 0.00 0.00 0.00 1.40
2417 2526 8.783093 CATGGTTGTAACTTGTTCTTCAGATTA 58.217 33.333 0.00 0.00 0.00 1.75
2418 2527 7.502226 TCATGGTTGTAACTTGTTCTTCAGATT 59.498 33.333 0.00 0.00 0.00 2.40
2419 2528 6.998074 TCATGGTTGTAACTTGTTCTTCAGAT 59.002 34.615 0.00 0.00 0.00 2.90
2420 2529 6.353323 TCATGGTTGTAACTTGTTCTTCAGA 58.647 36.000 0.00 0.00 0.00 3.27
2421 2530 6.618287 TCATGGTTGTAACTTGTTCTTCAG 57.382 37.500 0.00 0.00 0.00 3.02
2422 2531 7.581213 AATCATGGTTGTAACTTGTTCTTCA 57.419 32.000 0.00 0.00 0.00 3.02
2423 2532 8.871686 AAAATCATGGTTGTAACTTGTTCTTC 57.128 30.769 0.00 0.00 0.00 2.87
2424 2533 9.744468 GTAAAATCATGGTTGTAACTTGTTCTT 57.256 29.630 0.00 0.00 0.00 2.52
2425 2534 8.908903 TGTAAAATCATGGTTGTAACTTGTTCT 58.091 29.630 0.00 0.00 0.00 3.01
2426 2535 9.522804 TTGTAAAATCATGGTTGTAACTTGTTC 57.477 29.630 0.00 0.00 0.00 3.18
2428 2537 9.474920 CATTGTAAAATCATGGTTGTAACTTGT 57.525 29.630 0.00 0.00 0.00 3.16
2429 2538 9.474920 ACATTGTAAAATCATGGTTGTAACTTG 57.525 29.630 0.00 0.00 0.00 3.16
2430 2539 9.691362 GACATTGTAAAATCATGGTTGTAACTT 57.309 29.630 0.00 0.00 0.00 2.66
2431 2540 9.077885 AGACATTGTAAAATCATGGTTGTAACT 57.922 29.630 0.00 0.00 0.00 2.24
2432 2541 9.128107 CAGACATTGTAAAATCATGGTTGTAAC 57.872 33.333 0.00 0.00 0.00 2.50
2433 2542 9.072375 TCAGACATTGTAAAATCATGGTTGTAA 57.928 29.630 0.00 0.00 0.00 2.41
2434 2543 8.628630 TCAGACATTGTAAAATCATGGTTGTA 57.371 30.769 0.00 0.00 0.00 2.41
2435 2544 7.523293 TCAGACATTGTAAAATCATGGTTGT 57.477 32.000 0.00 0.00 0.00 3.32
2436 2545 8.030692 ACATCAGACATTGTAAAATCATGGTTG 58.969 33.333 0.00 0.00 0.00 3.77
2437 2546 8.125978 ACATCAGACATTGTAAAATCATGGTT 57.874 30.769 0.00 0.00 0.00 3.67
2438 2547 7.707624 ACATCAGACATTGTAAAATCATGGT 57.292 32.000 0.00 0.00 0.00 3.55
2439 2548 8.245491 TGAACATCAGACATTGTAAAATCATGG 58.755 33.333 0.00 0.00 0.00 3.66
2456 2565 3.806380 AGCTAGGCAATCTGAACATCAG 58.194 45.455 0.88 0.88 45.59 2.90
2457 2566 3.920231 AGCTAGGCAATCTGAACATCA 57.080 42.857 0.00 0.00 0.00 3.07
2458 2567 4.194640 TGAAGCTAGGCAATCTGAACATC 58.805 43.478 0.00 0.00 0.00 3.06
2459 2568 4.080695 TCTGAAGCTAGGCAATCTGAACAT 60.081 41.667 0.00 0.00 0.00 2.71
2460 2569 3.261643 TCTGAAGCTAGGCAATCTGAACA 59.738 43.478 0.00 0.00 0.00 3.18
2461 2570 3.866651 TCTGAAGCTAGGCAATCTGAAC 58.133 45.455 0.00 0.00 0.00 3.18
2462 2571 4.511527 CTTCTGAAGCTAGGCAATCTGAA 58.488 43.478 4.20 12.73 35.37 3.02
2463 2572 4.134379 CTTCTGAAGCTAGGCAATCTGA 57.866 45.455 4.20 0.00 0.00 3.27
2476 2585 2.229062 TCACTGTCCTACGCTTCTGAAG 59.771 50.000 13.02 13.02 0.00 3.02
2477 2586 2.235891 TCACTGTCCTACGCTTCTGAA 58.764 47.619 0.00 0.00 0.00 3.02
2478 2587 1.905637 TCACTGTCCTACGCTTCTGA 58.094 50.000 0.00 0.00 0.00 3.27
2479 2588 2.164422 TGATCACTGTCCTACGCTTCTG 59.836 50.000 0.00 0.00 0.00 3.02
2480 2589 2.447443 TGATCACTGTCCTACGCTTCT 58.553 47.619 0.00 0.00 0.00 2.85
2481 2590 2.924290 GTTGATCACTGTCCTACGCTTC 59.076 50.000 0.00 0.00 0.00 3.86
2482 2591 2.353803 GGTTGATCACTGTCCTACGCTT 60.354 50.000 0.00 0.00 0.00 4.68
2483 2592 1.204941 GGTTGATCACTGTCCTACGCT 59.795 52.381 0.00 0.00 0.00 5.07
2484 2593 1.641577 GGTTGATCACTGTCCTACGC 58.358 55.000 0.00 0.00 0.00 4.42
2485 2594 1.471287 TCGGTTGATCACTGTCCTACG 59.529 52.381 0.00 0.00 32.85 3.51
2486 2595 2.492484 ACTCGGTTGATCACTGTCCTAC 59.508 50.000 0.00 0.00 32.85 3.18
2487 2596 2.492088 CACTCGGTTGATCACTGTCCTA 59.508 50.000 0.00 0.00 32.85 2.94
2488 2597 1.273606 CACTCGGTTGATCACTGTCCT 59.726 52.381 0.00 0.00 32.85 3.85
2489 2598 1.272490 TCACTCGGTTGATCACTGTCC 59.728 52.381 0.00 0.00 32.85 4.02
2490 2599 2.229062 TCTCACTCGGTTGATCACTGTC 59.771 50.000 0.00 0.00 32.85 3.51
2491 2600 2.029828 GTCTCACTCGGTTGATCACTGT 60.030 50.000 0.00 0.00 32.85 3.55
2492 2601 2.600731 GTCTCACTCGGTTGATCACTG 58.399 52.381 0.00 0.00 0.00 3.66
2493 2602 1.546476 GGTCTCACTCGGTTGATCACT 59.454 52.381 0.00 0.00 0.00 3.41
2494 2603 1.546476 AGGTCTCACTCGGTTGATCAC 59.454 52.381 0.00 0.00 0.00 3.06
2495 2604 1.546029 CAGGTCTCACTCGGTTGATCA 59.454 52.381 0.00 0.00 0.00 2.92
2496 2605 1.737363 GCAGGTCTCACTCGGTTGATC 60.737 57.143 0.00 0.00 0.00 2.92
2497 2606 0.247736 GCAGGTCTCACTCGGTTGAT 59.752 55.000 0.00 0.00 0.00 2.57
2498 2607 0.827925 AGCAGGTCTCACTCGGTTGA 60.828 55.000 0.00 0.00 0.00 3.18
2499 2608 0.034059 AAGCAGGTCTCACTCGGTTG 59.966 55.000 0.00 0.00 0.00 3.77
2500 2609 0.759346 AAAGCAGGTCTCACTCGGTT 59.241 50.000 0.00 0.00 0.00 4.44
2501 2610 0.759346 AAAAGCAGGTCTCACTCGGT 59.241 50.000 0.00 0.00 0.00 4.69
2502 2611 2.288825 TGTAAAAGCAGGTCTCACTCGG 60.289 50.000 0.00 0.00 0.00 4.63
2503 2612 3.026630 TGTAAAAGCAGGTCTCACTCG 57.973 47.619 0.00 0.00 0.00 4.18
2504 2613 4.023963 GGTTTGTAAAAGCAGGTCTCACTC 60.024 45.833 0.00 0.00 0.00 3.51
2505 2614 3.883489 GGTTTGTAAAAGCAGGTCTCACT 59.117 43.478 0.00 0.00 0.00 3.41
2506 2615 3.630312 TGGTTTGTAAAAGCAGGTCTCAC 59.370 43.478 0.73 0.00 0.00 3.51
2507 2616 3.892284 TGGTTTGTAAAAGCAGGTCTCA 58.108 40.909 0.73 0.00 0.00 3.27
2508 2617 5.221244 ACAATGGTTTGTAAAAGCAGGTCTC 60.221 40.000 10.03 0.00 44.22 3.36
2509 2618 4.649218 ACAATGGTTTGTAAAAGCAGGTCT 59.351 37.500 10.03 0.00 44.22 3.85
2510 2619 4.944048 ACAATGGTTTGTAAAAGCAGGTC 58.056 39.130 10.03 0.00 44.22 3.85
2511 2620 5.010617 CCTACAATGGTTTGTAAAAGCAGGT 59.989 40.000 10.03 11.81 45.29 4.00
2512 2621 5.242838 TCCTACAATGGTTTGTAAAAGCAGG 59.757 40.000 10.03 7.49 45.29 4.85
2513 2622 6.016276 AGTCCTACAATGGTTTGTAAAAGCAG 60.016 38.462 10.03 1.43 45.29 4.24
2514 2623 5.830991 AGTCCTACAATGGTTTGTAAAAGCA 59.169 36.000 7.03 7.03 45.29 3.91
2515 2624 6.327279 AGTCCTACAATGGTTTGTAAAAGC 57.673 37.500 0.81 0.00 45.29 3.51
2516 2625 8.617290 ACTAGTCCTACAATGGTTTGTAAAAG 57.383 34.615 0.00 0.00 45.29 2.27
2520 2629 9.661563 CAAATACTAGTCCTACAATGGTTTGTA 57.338 33.333 0.00 0.00 44.22 2.41
2522 2631 8.786826 TCAAATACTAGTCCTACAATGGTTTG 57.213 34.615 0.00 0.00 38.86 2.93
2523 2632 9.975218 AATCAAATACTAGTCCTACAATGGTTT 57.025 29.630 0.00 0.00 0.00 3.27
2524 2633 9.614792 GAATCAAATACTAGTCCTACAATGGTT 57.385 33.333 0.00 0.00 0.00 3.67
2525 2634 8.993424 AGAATCAAATACTAGTCCTACAATGGT 58.007 33.333 0.00 0.00 0.00 3.55
2526 2635 9.265901 CAGAATCAAATACTAGTCCTACAATGG 57.734 37.037 0.00 0.00 0.00 3.16
2529 2638 9.475620 TCTCAGAATCAAATACTAGTCCTACAA 57.524 33.333 0.00 0.00 0.00 2.41
2530 2639 9.475620 TTCTCAGAATCAAATACTAGTCCTACA 57.524 33.333 0.00 0.00 0.00 2.74
2531 2640 9.959749 CTTCTCAGAATCAAATACTAGTCCTAC 57.040 37.037 0.00 0.00 0.00 3.18
2532 2641 9.702253 ACTTCTCAGAATCAAATACTAGTCCTA 57.298 33.333 0.00 0.00 0.00 2.94
2533 2642 8.602472 ACTTCTCAGAATCAAATACTAGTCCT 57.398 34.615 0.00 0.00 0.00 3.85
2536 2645 9.757227 GCATACTTCTCAGAATCAAATACTAGT 57.243 33.333 0.00 0.00 0.00 2.57
2537 2646 9.979578 AGCATACTTCTCAGAATCAAATACTAG 57.020 33.333 0.00 0.00 0.00 2.57
2538 2647 9.973450 GAGCATACTTCTCAGAATCAAATACTA 57.027 33.333 0.00 0.00 0.00 1.82
2539 2648 8.703743 AGAGCATACTTCTCAGAATCAAATACT 58.296 33.333 0.00 0.00 33.15 2.12
2540 2649 8.885494 AGAGCATACTTCTCAGAATCAAATAC 57.115 34.615 0.00 0.00 33.15 1.89
2542 2651 7.656948 GCTAGAGCATACTTCTCAGAATCAAAT 59.343 37.037 0.00 0.00 41.59 2.32
2543 2652 6.983307 GCTAGAGCATACTTCTCAGAATCAAA 59.017 38.462 0.00 0.00 41.59 2.69
2544 2653 6.462207 GGCTAGAGCATACTTCTCAGAATCAA 60.462 42.308 3.54 0.00 44.36 2.57
2545 2654 5.010516 GGCTAGAGCATACTTCTCAGAATCA 59.989 44.000 3.54 0.00 44.36 2.57
2546 2655 5.469479 GGCTAGAGCATACTTCTCAGAATC 58.531 45.833 3.54 0.00 44.36 2.52
2547 2656 4.022416 CGGCTAGAGCATACTTCTCAGAAT 60.022 45.833 3.54 0.00 44.36 2.40
2548 2657 3.316588 CGGCTAGAGCATACTTCTCAGAA 59.683 47.826 3.54 0.00 44.36 3.02
2549 2658 2.881513 CGGCTAGAGCATACTTCTCAGA 59.118 50.000 3.54 0.00 44.36 3.27
2550 2659 2.606795 GCGGCTAGAGCATACTTCTCAG 60.607 54.545 3.54 0.00 44.36 3.35
2551 2660 1.338337 GCGGCTAGAGCATACTTCTCA 59.662 52.381 3.54 0.00 44.36 3.27
2552 2661 1.338337 TGCGGCTAGAGCATACTTCTC 59.662 52.381 8.92 0.00 44.36 2.87
2553 2662 1.403814 TGCGGCTAGAGCATACTTCT 58.596 50.000 8.92 0.00 44.36 2.85
2554 2663 3.967886 TGCGGCTAGAGCATACTTC 57.032 52.632 8.92 0.00 44.36 3.01
2561 2670 0.097674 CACAACAATGCGGCTAGAGC 59.902 55.000 0.00 0.00 41.14 4.09
2562 2671 1.662629 CTCACAACAATGCGGCTAGAG 59.337 52.381 0.00 0.00 0.00 2.43
2563 2672 1.725641 CTCACAACAATGCGGCTAGA 58.274 50.000 0.00 0.00 0.00 2.43
2564 2673 0.097674 GCTCACAACAATGCGGCTAG 59.902 55.000 0.00 0.00 0.00 3.42
2565 2674 1.305219 GGCTCACAACAATGCGGCTA 61.305 55.000 0.00 0.00 0.00 3.93
2566 2675 2.629656 GGCTCACAACAATGCGGCT 61.630 57.895 0.00 0.00 0.00 5.52
2567 2676 2.126346 GGCTCACAACAATGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
2568 2677 0.676466 TAGGGCTCACAACAATGCGG 60.676 55.000 0.00 0.00 0.00 5.69
2569 2678 0.447801 GTAGGGCTCACAACAATGCG 59.552 55.000 0.00 0.00 0.00 4.73
2570 2679 1.826385 AGTAGGGCTCACAACAATGC 58.174 50.000 0.00 0.00 0.00 3.56
2571 2680 6.238484 GCTTAATAGTAGGGCTCACAACAATG 60.238 42.308 0.00 0.00 0.00 2.82
2572 2681 5.823045 GCTTAATAGTAGGGCTCACAACAAT 59.177 40.000 0.00 0.00 0.00 2.71
2573 2682 5.045869 AGCTTAATAGTAGGGCTCACAACAA 60.046 40.000 0.00 0.00 0.00 2.83
2574 2683 4.469945 AGCTTAATAGTAGGGCTCACAACA 59.530 41.667 0.00 0.00 0.00 3.33
2575 2684 5.024785 AGCTTAATAGTAGGGCTCACAAC 57.975 43.478 0.00 0.00 0.00 3.32
2576 2685 5.277857 GAGCTTAATAGTAGGGCTCACAA 57.722 43.478 16.69 0.00 45.79 3.33
2577 2686 4.939052 GAGCTTAATAGTAGGGCTCACA 57.061 45.455 16.69 0.00 45.79 3.58
2580 2689 4.262678 CCAAGGAGCTTAATAGTAGGGCTC 60.263 50.000 14.58 14.58 45.77 4.70
2581 2690 3.648545 CCAAGGAGCTTAATAGTAGGGCT 59.351 47.826 0.00 0.58 35.86 5.19
2582 2691 3.244596 CCCAAGGAGCTTAATAGTAGGGC 60.245 52.174 0.00 0.00 0.00 5.19
2583 2692 4.232091 TCCCAAGGAGCTTAATAGTAGGG 58.768 47.826 0.00 0.00 0.00 3.53
2584 2693 5.888982 TTCCCAAGGAGCTTAATAGTAGG 57.111 43.478 0.00 0.00 31.21 3.18
2585 2694 6.708054 CACATTCCCAAGGAGCTTAATAGTAG 59.292 42.308 0.00 0.00 31.21 2.57
2586 2695 6.157994 ACACATTCCCAAGGAGCTTAATAGTA 59.842 38.462 0.00 0.00 31.21 1.82
2587 2696 5.044846 ACACATTCCCAAGGAGCTTAATAGT 60.045 40.000 0.00 0.00 31.21 2.12
2588 2697 5.440610 ACACATTCCCAAGGAGCTTAATAG 58.559 41.667 0.00 0.00 31.21 1.73
2589 2698 5.191722 AGACACATTCCCAAGGAGCTTAATA 59.808 40.000 0.00 0.00 31.21 0.98
2590 2699 4.018050 AGACACATTCCCAAGGAGCTTAAT 60.018 41.667 0.00 0.00 31.21 1.40
2591 2700 3.330701 AGACACATTCCCAAGGAGCTTAA 59.669 43.478 0.00 0.00 31.21 1.85
2592 2701 2.912956 AGACACATTCCCAAGGAGCTTA 59.087 45.455 0.00 0.00 31.21 3.09
2593 2702 1.707427 AGACACATTCCCAAGGAGCTT 59.293 47.619 0.00 0.00 31.21 3.74
2594 2703 1.366319 AGACACATTCCCAAGGAGCT 58.634 50.000 0.00 0.00 31.21 4.09
2595 2704 3.010420 GTTAGACACATTCCCAAGGAGC 58.990 50.000 0.00 0.00 31.21 4.70
2596 2705 3.262420 CGTTAGACACATTCCCAAGGAG 58.738 50.000 0.00 0.00 31.21 3.69
2597 2706 2.027561 CCGTTAGACACATTCCCAAGGA 60.028 50.000 0.00 0.00 0.00 3.36
2598 2707 2.290071 ACCGTTAGACACATTCCCAAGG 60.290 50.000 0.00 0.00 0.00 3.61
2599 2708 3.053831 ACCGTTAGACACATTCCCAAG 57.946 47.619 0.00 0.00 0.00 3.61
2600 2709 3.495434 AACCGTTAGACACATTCCCAA 57.505 42.857 0.00 0.00 0.00 4.12
2601 2710 4.468510 AGATAACCGTTAGACACATTCCCA 59.531 41.667 0.00 0.00 0.00 4.37
2602 2711 4.809426 CAGATAACCGTTAGACACATTCCC 59.191 45.833 0.00 0.00 0.00 3.97
2603 2712 5.657474 TCAGATAACCGTTAGACACATTCC 58.343 41.667 0.00 0.00 0.00 3.01
2604 2713 5.232414 GCTCAGATAACCGTTAGACACATTC 59.768 44.000 0.00 0.00 0.00 2.67
2605 2714 5.109903 GCTCAGATAACCGTTAGACACATT 58.890 41.667 0.00 0.00 0.00 2.71
2606 2715 4.441634 GGCTCAGATAACCGTTAGACACAT 60.442 45.833 0.00 0.00 0.00 3.21
2607 2716 3.119245 GGCTCAGATAACCGTTAGACACA 60.119 47.826 0.00 0.00 0.00 3.72
2608 2717 3.130693 AGGCTCAGATAACCGTTAGACAC 59.869 47.826 0.00 0.00 0.00 3.67
2609 2718 3.362706 AGGCTCAGATAACCGTTAGACA 58.637 45.455 0.00 0.00 0.00 3.41
2610 2719 4.113354 CAAGGCTCAGATAACCGTTAGAC 58.887 47.826 0.00 0.00 0.00 2.59
2611 2720 3.430374 GCAAGGCTCAGATAACCGTTAGA 60.430 47.826 0.00 0.00 0.00 2.10
2612 2721 2.866762 GCAAGGCTCAGATAACCGTTAG 59.133 50.000 0.00 0.00 0.00 2.34
2613 2722 2.500098 AGCAAGGCTCAGATAACCGTTA 59.500 45.455 0.00 0.00 30.62 3.18
2614 2723 1.279271 AGCAAGGCTCAGATAACCGTT 59.721 47.619 0.00 0.00 30.62 4.44
2615 2724 0.905357 AGCAAGGCTCAGATAACCGT 59.095 50.000 0.00 0.00 30.62 4.83
2616 2725 2.101582 ACTAGCAAGGCTCAGATAACCG 59.898 50.000 0.00 0.00 40.44 4.44
2617 2726 3.828875 ACTAGCAAGGCTCAGATAACC 57.171 47.619 0.00 0.00 40.44 2.85
2618 2727 5.768317 CTCTACTAGCAAGGCTCAGATAAC 58.232 45.833 0.00 0.00 40.44 1.89
2633 2742 7.550906 ACTGGCAAATTTCTTTAGCTCTACTAG 59.449 37.037 0.00 0.00 30.79 2.57
2634 2743 7.394816 ACTGGCAAATTTCTTTAGCTCTACTA 58.605 34.615 0.00 0.00 0.00 1.82
2635 2744 6.241645 ACTGGCAAATTTCTTTAGCTCTACT 58.758 36.000 0.00 0.00 0.00 2.57
2636 2745 6.502136 ACTGGCAAATTTCTTTAGCTCTAC 57.498 37.500 0.00 0.00 0.00 2.59
2637 2746 6.071952 CCAACTGGCAAATTTCTTTAGCTCTA 60.072 38.462 0.00 0.00 0.00 2.43
2638 2747 5.279156 CCAACTGGCAAATTTCTTTAGCTCT 60.279 40.000 0.00 0.00 0.00 4.09
2639 2748 4.925646 CCAACTGGCAAATTTCTTTAGCTC 59.074 41.667 0.00 0.00 0.00 4.09
2640 2749 4.886579 CCAACTGGCAAATTTCTTTAGCT 58.113 39.130 0.00 0.00 0.00 3.32
2655 2764 2.239654 TGGGAGATTAGAAGCCAACTGG 59.760 50.000 0.00 0.00 38.53 4.00
2656 2765 3.634397 TGGGAGATTAGAAGCCAACTG 57.366 47.619 0.00 0.00 0.00 3.16
2657 2766 4.228210 TCATTGGGAGATTAGAAGCCAACT 59.772 41.667 0.00 0.00 0.00 3.16
2658 2767 4.336713 GTCATTGGGAGATTAGAAGCCAAC 59.663 45.833 0.00 0.00 0.00 3.77
2659 2768 4.526970 GTCATTGGGAGATTAGAAGCCAA 58.473 43.478 0.00 0.00 0.00 4.52
2660 2769 3.117888 GGTCATTGGGAGATTAGAAGCCA 60.118 47.826 0.00 0.00 0.00 4.75
2661 2770 3.117888 TGGTCATTGGGAGATTAGAAGCC 60.118 47.826 0.00 0.00 0.00 4.35
2662 2771 4.133078 CTGGTCATTGGGAGATTAGAAGC 58.867 47.826 0.00 0.00 0.00 3.86
2663 2772 4.164988 ACCTGGTCATTGGGAGATTAGAAG 59.835 45.833 0.00 0.00 0.00 2.85
2664 2773 4.111577 ACCTGGTCATTGGGAGATTAGAA 58.888 43.478 0.00 0.00 0.00 2.10
2665 2774 3.711704 GACCTGGTCATTGGGAGATTAGA 59.288 47.826 21.70 0.00 32.09 2.10
2666 2775 3.455910 TGACCTGGTCATTGGGAGATTAG 59.544 47.826 25.12 0.00 37.67 1.73
2667 2776 3.459828 TGACCTGGTCATTGGGAGATTA 58.540 45.455 25.12 0.00 37.67 1.75
2668 2777 2.278245 TGACCTGGTCATTGGGAGATT 58.722 47.619 25.12 0.00 37.67 2.40
2669 2778 1.971149 TGACCTGGTCATTGGGAGAT 58.029 50.000 25.12 0.00 37.67 2.75
2670 2779 3.492686 TGACCTGGTCATTGGGAGA 57.507 52.632 25.12 0.00 37.67 3.71
2678 2787 6.846505 AGAGATATCCTTAAATGACCTGGTCA 59.153 38.462 30.08 30.08 46.90 4.02
2679 2788 7.309770 AGAGATATCCTTAAATGACCTGGTC 57.690 40.000 19.96 19.96 0.00 4.02
2680 2789 7.512992 CAAGAGATATCCTTAAATGACCTGGT 58.487 38.462 0.00 0.00 0.00 4.00
2681 2790 6.429385 GCAAGAGATATCCTTAAATGACCTGG 59.571 42.308 0.00 0.00 0.00 4.45
2682 2791 7.222872 AGCAAGAGATATCCTTAAATGACCTG 58.777 38.462 0.00 0.00 0.00 4.00
2683 2792 7.385894 AGCAAGAGATATCCTTAAATGACCT 57.614 36.000 0.00 0.00 0.00 3.85
2684 2793 7.500559 ACAAGCAAGAGATATCCTTAAATGACC 59.499 37.037 0.00 0.00 0.00 4.02
2685 2794 8.341173 CACAAGCAAGAGATATCCTTAAATGAC 58.659 37.037 0.00 0.00 0.00 3.06
2686 2795 7.012704 GCACAAGCAAGAGATATCCTTAAATGA 59.987 37.037 0.00 0.00 41.58 2.57
2687 2796 7.137426 GCACAAGCAAGAGATATCCTTAAATG 58.863 38.462 0.00 5.25 41.58 2.32
2688 2797 7.269477 GCACAAGCAAGAGATATCCTTAAAT 57.731 36.000 0.00 0.00 41.58 1.40
2689 2798 6.683974 GCACAAGCAAGAGATATCCTTAAA 57.316 37.500 0.00 0.00 41.58 1.52
2711 2820 2.478539 GCTAAATGTACAAGCAGGCTGC 60.479 50.000 31.56 31.56 45.46 5.25
2712 2821 2.749076 TGCTAAATGTACAAGCAGGCTG 59.251 45.455 15.15 10.94 41.15 4.85
2713 2822 3.071874 TGCTAAATGTACAAGCAGGCT 57.928 42.857 15.15 0.00 41.15 4.58
2718 2827 6.030228 GTCCTTTCATGCTAAATGTACAAGC 58.970 40.000 10.50 10.50 36.77 4.01
2719 2828 7.144722 TGTCCTTTCATGCTAAATGTACAAG 57.855 36.000 0.00 0.00 0.00 3.16
2720 2829 7.701539 ATGTCCTTTCATGCTAAATGTACAA 57.298 32.000 0.00 0.00 0.00 2.41
2721 2830 7.148086 GGAATGTCCTTTCATGCTAAATGTACA 60.148 37.037 0.00 0.00 32.53 2.90
2722 2831 7.067494 AGGAATGTCCTTTCATGCTAAATGTAC 59.933 37.037 0.00 0.00 46.91 2.90
2723 2832 7.067372 CAGGAATGTCCTTTCATGCTAAATGTA 59.933 37.037 0.00 0.00 46.91 2.29
2724 2833 5.954150 AGGAATGTCCTTTCATGCTAAATGT 59.046 36.000 0.00 0.00 46.91 2.71
2725 2834 6.095860 TCAGGAATGTCCTTTCATGCTAAATG 59.904 38.462 0.00 0.00 46.91 2.32
2726 2835 6.189859 TCAGGAATGTCCTTTCATGCTAAAT 58.810 36.000 0.00 0.00 46.91 1.40
2727 2836 5.569355 TCAGGAATGTCCTTTCATGCTAAA 58.431 37.500 0.00 0.00 46.91 1.85
2728 2837 5.178096 TCAGGAATGTCCTTTCATGCTAA 57.822 39.130 0.00 0.00 46.91 3.09
2729 2838 4.842531 TCAGGAATGTCCTTTCATGCTA 57.157 40.909 0.00 0.00 46.91 3.49
2730 2839 3.726557 TCAGGAATGTCCTTTCATGCT 57.273 42.857 0.00 0.00 46.91 3.79
2731 2840 4.219288 ACTTTCAGGAATGTCCTTTCATGC 59.781 41.667 0.00 0.00 46.91 4.06
2732 2841 5.391310 CGACTTTCAGGAATGTCCTTTCATG 60.391 44.000 17.31 2.31 46.91 3.07
2733 2842 4.697352 CGACTTTCAGGAATGTCCTTTCAT 59.303 41.667 17.31 0.00 46.91 2.57
2734 2843 4.065088 CGACTTTCAGGAATGTCCTTTCA 58.935 43.478 17.31 0.00 46.91 2.69
2735 2844 4.065789 ACGACTTTCAGGAATGTCCTTTC 58.934 43.478 17.31 0.00 46.91 2.62
2736 2845 3.815401 CACGACTTTCAGGAATGTCCTTT 59.185 43.478 17.31 4.87 46.91 3.11
2737 2846 3.403038 CACGACTTTCAGGAATGTCCTT 58.597 45.455 17.31 6.70 46.91 3.36
2739 2848 2.076863 CCACGACTTTCAGGAATGTCC 58.923 52.381 17.31 5.51 40.36 4.02
2740 2849 3.040147 TCCACGACTTTCAGGAATGTC 57.960 47.619 14.62 14.62 40.19 3.06
2741 2850 3.485463 TTCCACGACTTTCAGGAATGT 57.515 42.857 0.00 0.73 35.35 2.71
2742 2851 4.829064 TTTTCCACGACTTTCAGGAATG 57.171 40.909 0.00 0.00 39.67 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.