Multiple sequence alignment - TraesCS1D01G111400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G111400 chr1D 100.000 2879 0 0 1 2879 106846401 106849279 0.000000e+00 5317.0
1 TraesCS1D01G111400 chr1D 86.391 169 21 2 2330 2496 246416540 246416372 1.760000e-42 183.0
2 TraesCS1D01G111400 chr1B 92.126 2032 92 32 355 2345 160310560 160308556 0.000000e+00 2804.0
3 TraesCS1D01G111400 chr1A 90.599 2021 95 26 384 2345 106218497 106216513 0.000000e+00 2591.0
4 TraesCS1D01G111400 chr1A 86.432 199 23 1 2681 2879 106216086 106215892 6.250000e-52 215.0
5 TraesCS1D01G111400 chr1A 89.375 160 14 1 2340 2499 532966235 532966079 6.290000e-47 198.0
6 TraesCS1D01G111400 chr1A 97.436 39 0 1 355 392 106218542 106218504 6.660000e-07 65.8
7 TraesCS1D01G111400 chr3A 90.741 162 11 3 2339 2496 112333526 112333365 2.250000e-51 213.0
8 TraesCS1D01G111400 chr7B 91.026 156 12 1 2340 2495 502910364 502910211 2.910000e-50 209.0
9 TraesCS1D01G111400 chr2A 88.889 171 12 3 2332 2496 25378819 25378988 1.350000e-48 204.0
10 TraesCS1D01G111400 chr2A 88.485 165 15 3 2336 2496 170138947 170139111 2.260000e-46 196.0
11 TraesCS1D01G111400 chr5A 87.931 174 10 3 2330 2503 503636011 503635849 8.140000e-46 195.0
12 TraesCS1D01G111400 chr5A 77.987 159 25 5 2720 2878 300111035 300110887 1.100000e-14 91.6
13 TraesCS1D01G111400 chr6D 87.952 166 11 8 2339 2495 18958837 18958672 1.360000e-43 187.0
14 TraesCS1D01G111400 chr2D 87.879 165 10 6 2339 2494 511918774 511918611 4.900000e-43 185.0
15 TraesCS1D01G111400 chr3B 85.950 121 12 3 180 297 97546132 97546014 1.080000e-24 124.0
16 TraesCS1D01G111400 chr4D 85.470 117 16 1 182 297 497279518 497279634 1.400000e-23 121.0
17 TraesCS1D01G111400 chr4D 88.732 71 7 1 228 297 19348894 19348824 5.110000e-13 86.1
18 TraesCS1D01G111400 chr7D 90.805 87 4 4 180 264 11258137 11258221 2.340000e-21 113.0
19 TraesCS1D01G111400 chr4B 89.286 84 8 1 180 262 5525938 5525855 1.410000e-18 104.0
20 TraesCS1D01G111400 chr2B 89.333 75 7 1 228 301 493260912 493260838 3.050000e-15 93.5
21 TraesCS1D01G111400 chr6A 88.889 72 7 1 228 298 38466429 38466500 1.420000e-13 87.9
22 TraesCS1D01G111400 chr6B 86.076 79 10 1 225 302 713530738 713530660 1.840000e-12 84.2
23 TraesCS1D01G111400 chr5B 79.339 121 22 3 180 298 28207603 28207722 6.610000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G111400 chr1D 106846401 106849279 2878 False 5317.000000 5317 100.000 1 2879 1 chr1D.!!$F1 2878
1 TraesCS1D01G111400 chr1B 160308556 160310560 2004 True 2804.000000 2804 92.126 355 2345 1 chr1B.!!$R1 1990
2 TraesCS1D01G111400 chr1A 106215892 106218542 2650 True 957.266667 2591 91.489 355 2879 3 chr1A.!!$R2 2524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.031585 TACTGTCTTGCGCACGAGTT 59.968 50.0 17.79 6.92 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 1971 0.965866 ACGTGCTCCGGATTCTCTGA 60.966 55.0 3.57 0.0 42.24 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.155475 GTTATCATCCAGAAGAGCTACTGT 57.845 41.667 12.03 0.00 32.93 3.55
24 25 4.935352 ATCATCCAGAAGAGCTACTGTC 57.065 45.455 12.03 0.00 32.93 3.51
25 26 3.974719 TCATCCAGAAGAGCTACTGTCT 58.025 45.455 12.03 0.00 32.93 3.41
26 27 4.348486 TCATCCAGAAGAGCTACTGTCTT 58.652 43.478 12.03 0.40 36.95 3.01
27 28 4.159321 TCATCCAGAAGAGCTACTGTCTTG 59.841 45.833 12.03 7.83 34.30 3.02
28 29 2.232452 TCCAGAAGAGCTACTGTCTTGC 59.768 50.000 12.03 0.00 34.30 4.01
29 30 2.257894 CAGAAGAGCTACTGTCTTGCG 58.742 52.381 0.00 0.00 34.30 4.85
30 31 0.995728 GAAGAGCTACTGTCTTGCGC 59.004 55.000 0.00 0.00 34.30 6.09
31 32 0.318441 AAGAGCTACTGTCTTGCGCA 59.682 50.000 5.66 5.66 32.86 6.09
32 33 0.389166 AGAGCTACTGTCTTGCGCAC 60.389 55.000 11.12 0.00 0.00 5.34
33 34 1.678269 GAGCTACTGTCTTGCGCACG 61.678 60.000 11.12 9.20 0.00 5.34
34 35 1.733041 GCTACTGTCTTGCGCACGA 60.733 57.895 11.12 12.30 0.00 4.35
35 36 1.678269 GCTACTGTCTTGCGCACGAG 61.678 60.000 17.79 10.03 0.00 4.18
36 37 0.387367 CTACTGTCTTGCGCACGAGT 60.387 55.000 17.79 14.61 0.00 4.18
37 38 0.031585 TACTGTCTTGCGCACGAGTT 59.968 50.000 17.79 6.92 0.00 3.01
38 39 0.810031 ACTGTCTTGCGCACGAGTTT 60.810 50.000 17.79 0.95 0.00 2.66
39 40 0.383491 CTGTCTTGCGCACGAGTTTG 60.383 55.000 17.79 4.12 0.00 2.93
40 41 1.722507 GTCTTGCGCACGAGTTTGC 60.723 57.895 17.79 1.00 39.28 3.68
41 42 2.176926 TCTTGCGCACGAGTTTGCA 61.177 52.632 11.12 0.00 43.15 4.08
42 43 1.723542 CTTGCGCACGAGTTTGCAG 60.724 57.895 11.12 0.00 43.15 4.41
43 44 3.805385 TTGCGCACGAGTTTGCAGC 62.805 57.895 11.12 0.00 43.15 5.25
45 46 4.000557 CGCACGAGTTTGCAGCGT 62.001 61.111 6.13 3.51 43.15 5.07
46 47 2.327940 GCACGAGTTTGCAGCGTT 59.672 55.556 0.00 0.00 42.49 4.84
47 48 2.005537 GCACGAGTTTGCAGCGTTG 61.006 57.895 0.00 0.00 42.49 4.10
48 49 1.351707 CACGAGTTTGCAGCGTTGT 59.648 52.632 0.00 0.00 35.90 3.32
49 50 0.654472 CACGAGTTTGCAGCGTTGTC 60.654 55.000 0.00 0.00 35.90 3.18
50 51 1.082756 CGAGTTTGCAGCGTTGTCC 60.083 57.895 0.00 0.00 0.00 4.02
51 52 1.771073 CGAGTTTGCAGCGTTGTCCA 61.771 55.000 0.00 0.00 0.00 4.02
52 53 0.040958 GAGTTTGCAGCGTTGTCCAG 60.041 55.000 0.00 0.00 0.00 3.86
53 54 0.463654 AGTTTGCAGCGTTGTCCAGA 60.464 50.000 0.00 0.00 0.00 3.86
54 55 0.380378 GTTTGCAGCGTTGTCCAGAA 59.620 50.000 0.00 0.00 0.00 3.02
55 56 0.380378 TTTGCAGCGTTGTCCAGAAC 59.620 50.000 0.00 0.00 0.00 3.01
56 57 0.463654 TTGCAGCGTTGTCCAGAACT 60.464 50.000 0.00 0.00 0.00 3.01
57 58 0.463654 TGCAGCGTTGTCCAGAACTT 60.464 50.000 0.00 0.00 0.00 2.66
58 59 0.235926 GCAGCGTTGTCCAGAACTTC 59.764 55.000 0.00 0.00 0.00 3.01
59 60 1.871080 CAGCGTTGTCCAGAACTTCT 58.129 50.000 0.00 0.00 0.00 2.85
60 61 1.528586 CAGCGTTGTCCAGAACTTCTG 59.471 52.381 11.37 11.37 43.91 3.02
70 71 3.760580 CAGAACTTCTGGGAGTCAAGT 57.239 47.619 10.57 0.00 40.71 3.16
71 72 4.078639 CAGAACTTCTGGGAGTCAAGTT 57.921 45.455 10.57 6.13 40.71 2.66
72 73 4.455606 CAGAACTTCTGGGAGTCAAGTTT 58.544 43.478 10.57 0.00 40.71 2.66
73 74 4.884164 CAGAACTTCTGGGAGTCAAGTTTT 59.116 41.667 10.57 0.89 40.71 2.43
74 75 4.884164 AGAACTTCTGGGAGTCAAGTTTTG 59.116 41.667 7.52 0.00 39.84 2.44
75 76 4.503714 ACTTCTGGGAGTCAAGTTTTGA 57.496 40.909 0.00 0.00 37.33 2.69
76 77 5.053978 ACTTCTGGGAGTCAAGTTTTGAT 57.946 39.130 0.00 0.00 42.47 2.57
77 78 6.187727 ACTTCTGGGAGTCAAGTTTTGATA 57.812 37.500 0.00 0.00 42.47 2.15
78 79 6.234177 ACTTCTGGGAGTCAAGTTTTGATAG 58.766 40.000 0.00 0.00 42.47 2.08
79 80 4.579869 TCTGGGAGTCAAGTTTTGATAGC 58.420 43.478 0.00 0.00 42.47 2.97
80 81 4.287067 TCTGGGAGTCAAGTTTTGATAGCT 59.713 41.667 0.00 0.00 42.47 3.32
81 82 5.483937 TCTGGGAGTCAAGTTTTGATAGCTA 59.516 40.000 0.00 0.00 42.47 3.32
82 83 5.734720 TGGGAGTCAAGTTTTGATAGCTAG 58.265 41.667 0.00 0.00 42.47 3.42
83 84 5.483937 TGGGAGTCAAGTTTTGATAGCTAGA 59.516 40.000 0.00 0.00 42.47 2.43
84 85 6.045955 GGGAGTCAAGTTTTGATAGCTAGAG 58.954 44.000 0.00 0.00 42.47 2.43
85 86 6.351456 GGGAGTCAAGTTTTGATAGCTAGAGT 60.351 42.308 0.00 0.00 42.47 3.24
86 87 7.100409 GGAGTCAAGTTTTGATAGCTAGAGTT 58.900 38.462 0.00 0.00 42.47 3.01
87 88 7.276878 GGAGTCAAGTTTTGATAGCTAGAGTTC 59.723 40.741 0.00 0.00 42.47 3.01
88 89 7.100409 AGTCAAGTTTTGATAGCTAGAGTTCC 58.900 38.462 0.00 0.00 42.47 3.62
89 90 6.035112 GTCAAGTTTTGATAGCTAGAGTTCCG 59.965 42.308 0.00 0.00 42.47 4.30
90 91 5.012328 AGTTTTGATAGCTAGAGTTCCGG 57.988 43.478 0.00 0.00 0.00 5.14
91 92 4.120589 GTTTTGATAGCTAGAGTTCCGGG 58.879 47.826 0.00 0.00 0.00 5.73
92 93 1.329256 TGATAGCTAGAGTTCCGGGC 58.671 55.000 0.00 0.00 0.00 6.13
93 94 1.329256 GATAGCTAGAGTTCCGGGCA 58.671 55.000 0.00 0.00 0.00 5.36
94 95 1.687123 GATAGCTAGAGTTCCGGGCAA 59.313 52.381 0.00 0.00 0.00 4.52
95 96 0.822164 TAGCTAGAGTTCCGGGCAAC 59.178 55.000 0.00 0.00 0.00 4.17
107 108 3.365265 GGCAACCTTGTCCGCCTG 61.365 66.667 0.00 0.00 41.50 4.85
108 109 2.281484 GCAACCTTGTCCGCCTGA 60.281 61.111 0.00 0.00 0.00 3.86
109 110 1.675641 GCAACCTTGTCCGCCTGAT 60.676 57.895 0.00 0.00 0.00 2.90
110 111 1.926511 GCAACCTTGTCCGCCTGATG 61.927 60.000 0.00 0.00 0.00 3.07
111 112 1.675641 AACCTTGTCCGCCTGATGC 60.676 57.895 0.00 0.00 0.00 3.91
112 113 2.046023 CCTTGTCCGCCTGATGCA 60.046 61.111 0.00 0.00 41.33 3.96
113 114 2.110967 CCTTGTCCGCCTGATGCAG 61.111 63.158 0.00 0.00 41.33 4.41
114 115 1.376424 CTTGTCCGCCTGATGCAGT 60.376 57.895 0.00 0.00 41.33 4.40
115 116 0.957395 CTTGTCCGCCTGATGCAGTT 60.957 55.000 0.00 0.00 41.33 3.16
116 117 0.537143 TTGTCCGCCTGATGCAGTTT 60.537 50.000 0.00 0.00 41.33 2.66
117 118 1.236616 TGTCCGCCTGATGCAGTTTG 61.237 55.000 0.00 0.00 41.33 2.93
118 119 0.955428 GTCCGCCTGATGCAGTTTGA 60.955 55.000 0.00 0.00 41.33 2.69
119 120 0.955428 TCCGCCTGATGCAGTTTGAC 60.955 55.000 0.00 0.00 41.33 3.18
120 121 0.957395 CCGCCTGATGCAGTTTGACT 60.957 55.000 0.00 0.00 41.33 3.41
136 137 4.715534 TTGACTGTAATCAAACCAGGGA 57.284 40.909 0.00 0.00 35.65 4.20
137 138 4.286297 TGACTGTAATCAAACCAGGGAG 57.714 45.455 0.00 0.00 0.00 4.30
138 139 3.650942 TGACTGTAATCAAACCAGGGAGT 59.349 43.478 0.00 0.00 0.00 3.85
139 140 4.841813 TGACTGTAATCAAACCAGGGAGTA 59.158 41.667 0.00 0.00 0.00 2.59
140 141 5.308497 TGACTGTAATCAAACCAGGGAGTAA 59.692 40.000 0.00 0.00 0.00 2.24
141 142 5.557866 ACTGTAATCAAACCAGGGAGTAAC 58.442 41.667 0.00 0.00 0.00 2.50
142 143 5.309806 ACTGTAATCAAACCAGGGAGTAACT 59.690 40.000 0.00 0.00 0.00 2.24
143 144 6.183361 ACTGTAATCAAACCAGGGAGTAACTT 60.183 38.462 0.00 0.00 0.00 2.66
144 145 7.016858 ACTGTAATCAAACCAGGGAGTAACTTA 59.983 37.037 0.00 0.00 0.00 2.24
145 146 7.163441 TGTAATCAAACCAGGGAGTAACTTAC 58.837 38.462 0.00 0.00 0.00 2.34
146 147 6.449830 AATCAAACCAGGGAGTAACTTACT 57.550 37.500 0.76 0.76 42.86 2.24
229 230 9.715123 TTATGATACATACTTTGCGTTTCATTG 57.285 29.630 0.00 0.00 34.53 2.82
230 231 6.550843 TGATACATACTTTGCGTTTCATTGG 58.449 36.000 0.00 0.00 0.00 3.16
231 232 4.846779 ACATACTTTGCGTTTCATTGGT 57.153 36.364 0.00 0.00 0.00 3.67
232 233 5.195001 ACATACTTTGCGTTTCATTGGTT 57.805 34.783 0.00 0.00 0.00 3.67
233 234 6.320494 ACATACTTTGCGTTTCATTGGTTA 57.680 33.333 0.00 0.00 0.00 2.85
234 235 6.740110 ACATACTTTGCGTTTCATTGGTTAA 58.260 32.000 0.00 0.00 0.00 2.01
235 236 7.203910 ACATACTTTGCGTTTCATTGGTTAAA 58.796 30.769 0.00 0.00 0.00 1.52
236 237 7.870445 ACATACTTTGCGTTTCATTGGTTAAAT 59.130 29.630 0.00 0.00 0.00 1.40
237 238 8.707839 CATACTTTGCGTTTCATTGGTTAAATT 58.292 29.630 0.00 0.00 0.00 1.82
238 239 7.546778 ACTTTGCGTTTCATTGGTTAAATTT 57.453 28.000 0.00 0.00 0.00 1.82
239 240 8.649973 ACTTTGCGTTTCATTGGTTAAATTTA 57.350 26.923 0.00 0.00 0.00 1.40
240 241 9.267084 ACTTTGCGTTTCATTGGTTAAATTTAT 57.733 25.926 0.00 0.00 0.00 1.40
241 242 9.527566 CTTTGCGTTTCATTGGTTAAATTTATG 57.472 29.630 0.00 0.00 0.00 1.90
242 243 7.588143 TGCGTTTCATTGGTTAAATTTATGG 57.412 32.000 0.00 0.00 0.00 2.74
243 244 7.155328 TGCGTTTCATTGGTTAAATTTATGGT 58.845 30.769 0.00 0.00 0.00 3.55
244 245 7.329717 TGCGTTTCATTGGTTAAATTTATGGTC 59.670 33.333 0.00 0.00 0.00 4.02
245 246 7.329717 GCGTTTCATTGGTTAAATTTATGGTCA 59.670 33.333 0.00 0.00 0.00 4.02
246 247 9.197694 CGTTTCATTGGTTAAATTTATGGTCAA 57.802 29.630 0.00 2.87 0.00 3.18
249 250 9.495572 TTCATTGGTTAAATTTATGGTCAAACC 57.504 29.630 9.04 9.04 39.22 3.27
250 251 8.875168 TCATTGGTTAAATTTATGGTCAAACCT 58.125 29.630 14.69 0.00 39.58 3.50
263 264 6.084326 TGGTCAAACCTAAATCTCAAAAGC 57.916 37.500 0.00 0.00 39.58 3.51
264 265 5.596361 TGGTCAAACCTAAATCTCAAAAGCA 59.404 36.000 0.00 0.00 39.58 3.91
265 266 5.920840 GGTCAAACCTAAATCTCAAAAGCAC 59.079 40.000 0.00 0.00 34.73 4.40
266 267 5.625311 GTCAAACCTAAATCTCAAAAGCACG 59.375 40.000 0.00 0.00 0.00 5.34
267 268 3.831715 ACCTAAATCTCAAAAGCACGC 57.168 42.857 0.00 0.00 0.00 5.34
268 269 3.146066 ACCTAAATCTCAAAAGCACGCA 58.854 40.909 0.00 0.00 0.00 5.24
269 270 3.058224 ACCTAAATCTCAAAAGCACGCAC 60.058 43.478 0.00 0.00 0.00 5.34
270 271 2.036556 AAATCTCAAAAGCACGCACG 57.963 45.000 0.00 0.00 0.00 5.34
271 272 0.385974 AATCTCAAAAGCACGCACGC 60.386 50.000 0.00 0.00 0.00 5.34
272 273 1.506309 ATCTCAAAAGCACGCACGCA 61.506 50.000 0.00 0.00 0.00 5.24
273 274 1.081906 CTCAAAAGCACGCACGCAT 60.082 52.632 0.00 0.00 0.00 4.73
274 275 0.661187 CTCAAAAGCACGCACGCATT 60.661 50.000 0.00 0.00 0.00 3.56
275 276 0.588737 TCAAAAGCACGCACGCATTA 59.411 45.000 0.00 0.00 0.00 1.90
276 277 0.702383 CAAAAGCACGCACGCATTAC 59.298 50.000 0.00 0.00 0.00 1.89
277 278 0.309302 AAAAGCACGCACGCATTACA 59.691 45.000 0.00 0.00 0.00 2.41
278 279 0.521291 AAAGCACGCACGCATTACAT 59.479 45.000 0.00 0.00 0.00 2.29
279 280 0.521291 AAGCACGCACGCATTACATT 59.479 45.000 0.00 0.00 0.00 2.71
280 281 0.179192 AGCACGCACGCATTACATTG 60.179 50.000 0.00 0.00 0.00 2.82
281 282 0.454285 GCACGCACGCATTACATTGT 60.454 50.000 0.00 0.00 0.00 2.71
282 283 1.249598 CACGCACGCATTACATTGTG 58.750 50.000 0.00 0.00 35.48 3.33
283 284 0.167908 ACGCACGCATTACATTGTGG 59.832 50.000 0.00 0.00 33.04 4.17
284 285 0.445829 CGCACGCATTACATTGTGGA 59.554 50.000 0.00 0.00 33.04 4.02
285 286 1.135831 CGCACGCATTACATTGTGGAA 60.136 47.619 0.00 0.00 33.04 3.53
286 287 2.477694 CGCACGCATTACATTGTGGAAT 60.478 45.455 0.00 0.00 29.05 3.01
288 289 3.437428 CACGCATTACATTGTGGAATGG 58.563 45.455 14.78 8.65 46.30 3.16
289 290 3.128415 CACGCATTACATTGTGGAATGGA 59.872 43.478 14.78 0.00 46.30 3.41
290 291 3.378112 ACGCATTACATTGTGGAATGGAG 59.622 43.478 14.78 3.05 46.30 3.86
291 292 3.243168 CGCATTACATTGTGGAATGGAGG 60.243 47.826 14.78 0.00 46.30 4.30
292 293 3.068590 GCATTACATTGTGGAATGGAGGG 59.931 47.826 14.78 0.00 46.30 4.30
293 294 4.535781 CATTACATTGTGGAATGGAGGGA 58.464 43.478 6.95 0.00 43.33 4.20
294 295 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
295 296 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
296 297 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
297 298 3.200825 ACATTGTGGAATGGAGGGAGTAG 59.799 47.826 0.00 0.00 43.00 2.57
298 299 2.940514 TGTGGAATGGAGGGAGTAGA 57.059 50.000 0.00 0.00 0.00 2.59
299 300 3.199442 TGTGGAATGGAGGGAGTAGAA 57.801 47.619 0.00 0.00 0.00 2.10
300 301 3.526899 TGTGGAATGGAGGGAGTAGAAA 58.473 45.455 0.00 0.00 0.00 2.52
301 302 3.913799 TGTGGAATGGAGGGAGTAGAAAA 59.086 43.478 0.00 0.00 0.00 2.29
302 303 4.019321 TGTGGAATGGAGGGAGTAGAAAAG 60.019 45.833 0.00 0.00 0.00 2.27
303 304 4.019231 GTGGAATGGAGGGAGTAGAAAAGT 60.019 45.833 0.00 0.00 0.00 2.66
304 305 4.019321 TGGAATGGAGGGAGTAGAAAAGTG 60.019 45.833 0.00 0.00 0.00 3.16
305 306 4.518249 GAATGGAGGGAGTAGAAAAGTGG 58.482 47.826 0.00 0.00 0.00 4.00
306 307 3.269592 TGGAGGGAGTAGAAAAGTGGA 57.730 47.619 0.00 0.00 0.00 4.02
307 308 3.173965 TGGAGGGAGTAGAAAAGTGGAG 58.826 50.000 0.00 0.00 0.00 3.86
308 309 3.181410 TGGAGGGAGTAGAAAAGTGGAGA 60.181 47.826 0.00 0.00 0.00 3.71
309 310 4.034410 GGAGGGAGTAGAAAAGTGGAGAT 58.966 47.826 0.00 0.00 0.00 2.75
310 311 4.100344 GGAGGGAGTAGAAAAGTGGAGATC 59.900 50.000 0.00 0.00 0.00 2.75
311 312 4.034410 AGGGAGTAGAAAAGTGGAGATCC 58.966 47.826 0.00 0.00 0.00 3.36
312 313 3.775316 GGGAGTAGAAAAGTGGAGATCCA 59.225 47.826 0.00 0.00 45.30 3.41
322 323 1.035923 TGGAGATCCAGATGACTCGC 58.964 55.000 0.00 0.00 42.01 5.03
323 324 1.035923 GGAGATCCAGATGACTCGCA 58.964 55.000 0.00 0.00 35.64 5.10
324 325 1.410517 GGAGATCCAGATGACTCGCAA 59.589 52.381 0.00 0.00 35.64 4.85
325 326 2.468831 GAGATCCAGATGACTCGCAAC 58.531 52.381 0.00 0.00 0.00 4.17
326 327 1.202348 AGATCCAGATGACTCGCAACG 60.202 52.381 0.00 0.00 0.00 4.10
327 328 0.817654 ATCCAGATGACTCGCAACGA 59.182 50.000 0.00 0.00 0.00 3.85
328 329 0.109272 TCCAGATGACTCGCAACGAC 60.109 55.000 0.00 0.00 0.00 4.34
329 330 0.388520 CCAGATGACTCGCAACGACA 60.389 55.000 0.00 0.00 0.00 4.35
330 331 1.418373 CAGATGACTCGCAACGACAA 58.582 50.000 0.00 0.00 0.00 3.18
331 332 1.388093 CAGATGACTCGCAACGACAAG 59.612 52.381 0.00 0.00 0.00 3.16
332 333 1.269723 AGATGACTCGCAACGACAAGA 59.730 47.619 0.00 0.00 0.00 3.02
333 334 2.094494 AGATGACTCGCAACGACAAGAT 60.094 45.455 0.00 0.00 0.00 2.40
334 335 3.128764 AGATGACTCGCAACGACAAGATA 59.871 43.478 0.00 0.00 0.00 1.98
335 336 2.863739 TGACTCGCAACGACAAGATAG 58.136 47.619 0.00 0.00 0.00 2.08
336 337 2.486592 TGACTCGCAACGACAAGATAGA 59.513 45.455 0.00 0.00 0.00 1.98
337 338 2.847133 GACTCGCAACGACAAGATAGAC 59.153 50.000 0.00 0.00 0.00 2.59
338 339 1.840741 CTCGCAACGACAAGATAGACG 59.159 52.381 0.00 0.00 0.00 4.18
339 340 1.198408 TCGCAACGACAAGATAGACGT 59.802 47.619 0.00 0.00 41.26 4.34
340 341 1.578023 CGCAACGACAAGATAGACGTC 59.422 52.381 7.70 7.70 38.81 4.34
341 342 1.918609 GCAACGACAAGATAGACGTCC 59.081 52.381 13.01 0.00 38.81 4.79
342 343 2.527100 CAACGACAAGATAGACGTCCC 58.473 52.381 13.01 1.75 38.81 4.46
343 344 2.125773 ACGACAAGATAGACGTCCCT 57.874 50.000 13.01 4.34 35.12 4.20
344 345 1.743958 ACGACAAGATAGACGTCCCTG 59.256 52.381 13.01 5.24 35.12 4.45
345 346 1.534175 CGACAAGATAGACGTCCCTGC 60.534 57.143 13.01 0.00 0.00 4.85
346 347 0.824759 ACAAGATAGACGTCCCTGCC 59.175 55.000 13.01 0.00 0.00 4.85
347 348 1.115467 CAAGATAGACGTCCCTGCCT 58.885 55.000 13.01 0.00 0.00 4.75
348 349 1.067821 CAAGATAGACGTCCCTGCCTC 59.932 57.143 13.01 0.44 0.00 4.70
349 350 0.820074 AGATAGACGTCCCTGCCTCG 60.820 60.000 13.01 0.00 0.00 4.63
350 351 1.797211 GATAGACGTCCCTGCCTCGG 61.797 65.000 13.01 0.00 0.00 4.63
479 502 1.220529 CAACGAAGCAGCAGTCTTGA 58.779 50.000 0.00 0.00 0.00 3.02
481 504 0.390860 ACGAAGCAGCAGTCTTGACT 59.609 50.000 0.00 0.00 0.00 3.41
482 505 1.066914 CGAAGCAGCAGTCTTGACTC 58.933 55.000 0.00 0.00 0.00 3.36
483 506 1.336702 CGAAGCAGCAGTCTTGACTCT 60.337 52.381 0.00 0.00 0.00 3.24
484 507 2.765122 GAAGCAGCAGTCTTGACTCTT 58.235 47.619 0.00 1.74 0.00 2.85
485 508 2.166821 AGCAGCAGTCTTGACTCTTG 57.833 50.000 0.00 3.95 0.00 3.02
486 509 1.690893 AGCAGCAGTCTTGACTCTTGA 59.309 47.619 12.41 0.00 0.00 3.02
554 578 3.056328 GCTCTGTTGGGTTCCGCC 61.056 66.667 0.00 0.00 0.00 6.13
689 720 0.249657 GGCGAGCTGGAACCATCTAG 60.250 60.000 0.00 0.00 37.23 2.43
717 750 1.886861 CTTCTTTCGGACACGTGCGG 61.887 60.000 17.22 12.72 44.66 5.69
718 751 4.072088 CTTTCGGACACGTGCGGC 62.072 66.667 17.22 5.21 44.66 6.53
720 753 3.210223 TTTCGGACACGTGCGGCTA 62.210 57.895 17.22 0.00 44.66 3.93
722 755 2.495366 TTCGGACACGTGCGGCTAAT 62.495 55.000 17.22 0.00 44.66 1.73
723 756 2.514013 CGGACACGTGCGGCTAATC 61.514 63.158 17.22 3.26 40.80 1.75
899 940 2.759191 TCATCACACTTCACTGCAGTC 58.241 47.619 18.64 0.00 0.00 3.51
933 974 1.101635 TCGAGATACCCCTCACTGCG 61.102 60.000 0.00 0.00 32.86 5.18
967 1012 2.307934 AAAGAGAGATTCTCAGCGCC 57.692 50.000 15.83 0.32 45.73 6.53
968 1013 0.463620 AAGAGAGATTCTCAGCGCCC 59.536 55.000 15.83 0.00 45.73 6.13
988 1033 4.551671 CCCCTCCTGAAAGAGAGATAGAA 58.448 47.826 0.00 0.00 34.45 2.10
1129 1174 4.131088 GGACCGACGAGGAGCACC 62.131 72.222 8.56 0.00 45.00 5.01
1138 1183 2.027625 GAGGAGCACCAACGGTTCG 61.028 63.158 2.07 0.00 38.94 3.95
1162 1207 2.393768 GCCCTGCACATGTGAGTCG 61.394 63.158 29.80 13.63 0.00 4.18
1165 1210 2.733671 CTGCACATGTGAGTCGCCG 61.734 63.158 29.80 6.08 0.00 6.46
1166 1211 2.738521 GCACATGTGAGTCGCCGT 60.739 61.111 29.80 0.00 0.00 5.68
1167 1212 2.317609 GCACATGTGAGTCGCCGTT 61.318 57.895 29.80 0.00 0.00 4.44
1202 1254 0.107752 CTGCTCTTTCCTCTCTGCCC 60.108 60.000 0.00 0.00 0.00 5.36
1350 1402 2.633657 CACGCGCAGAAGCACTTT 59.366 55.556 5.73 0.00 42.27 2.66
1552 1610 4.129737 AGTGTCCGTCCGCCGATG 62.130 66.667 0.00 0.00 39.56 3.84
1585 1643 1.566018 CCTGCAGGACGAAACCGTTC 61.566 60.000 29.88 0.00 40.80 3.95
1610 1668 2.603776 ACTGTCTCCCCACGACCC 60.604 66.667 0.00 0.00 0.00 4.46
1912 1971 3.374058 CGGCATGGTTTCTTTCTTATCGT 59.626 43.478 0.00 0.00 0.00 3.73
1921 1980 7.545965 TGGTTTCTTTCTTATCGTCAGAGAATC 59.454 37.037 0.00 0.00 30.26 2.52
1954 2013 0.806102 GTCACATGGATGGACGGACG 60.806 60.000 0.00 0.00 0.00 4.79
1966 2025 2.158986 TGGACGGACGGTTTTAGTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
1969 2028 3.731089 ACGGACGGTTTTAGTTTCATGA 58.269 40.909 0.00 0.00 0.00 3.07
1974 2033 6.073657 CGGACGGTTTTAGTTTCATGAAGTTA 60.074 38.462 8.41 2.83 0.00 2.24
2059 2118 7.541122 AGAGTTCGTTTGAATTAGCCTTATC 57.459 36.000 0.00 0.00 36.29 1.75
2061 2120 5.293569 AGTTCGTTTGAATTAGCCTTATCCG 59.706 40.000 0.00 0.00 36.29 4.18
2229 2317 6.097696 TGCATCATCCTGACAATCATTCAATT 59.902 34.615 0.00 0.00 0.00 2.32
2230 2318 6.420903 GCATCATCCTGACAATCATTCAATTG 59.579 38.462 0.00 0.00 41.46 2.32
2231 2319 7.683463 GCATCATCCTGACAATCATTCAATTGA 60.683 37.037 3.38 3.38 38.64 2.57
2339 2438 3.982475 TCGCACAATGGTTAAAAATGCA 58.018 36.364 0.00 0.00 0.00 3.96
2340 2439 3.986572 TCGCACAATGGTTAAAAATGCAG 59.013 39.130 0.00 0.00 0.00 4.41
2341 2440 3.740321 CGCACAATGGTTAAAAATGCAGT 59.260 39.130 0.00 0.00 0.00 4.40
2342 2441 4.210955 CGCACAATGGTTAAAAATGCAGTT 59.789 37.500 0.00 0.00 0.00 3.16
2343 2442 5.277250 CGCACAATGGTTAAAAATGCAGTTT 60.277 36.000 6.26 6.26 0.00 2.66
2344 2443 6.493978 GCACAATGGTTAAAAATGCAGTTTT 58.506 32.000 25.89 25.89 41.69 2.43
2345 2444 6.414402 GCACAATGGTTAAAAATGCAGTTTTG 59.586 34.615 29.44 16.86 39.86 2.44
2378 2477 7.579589 CATCTAGATGTGCTCTAAGTATTGC 57.420 40.000 22.42 0.00 36.02 3.56
2379 2478 6.715347 TCTAGATGTGCTCTAAGTATTGCA 57.285 37.500 0.00 0.00 36.02 4.08
2389 2488 8.370493 TGCTCTAAGTATTGCACATCTAAATC 57.630 34.615 0.00 0.00 0.00 2.17
2390 2489 7.442364 TGCTCTAAGTATTGCACATCTAAATCC 59.558 37.037 0.00 0.00 0.00 3.01
2391 2490 7.659390 GCTCTAAGTATTGCACATCTAAATCCT 59.341 37.037 0.00 0.00 0.00 3.24
2396 2495 8.839310 AGTATTGCACATCTAAATCCTATGTC 57.161 34.615 0.00 0.00 31.60 3.06
2397 2496 8.432013 AGTATTGCACATCTAAATCCTATGTCA 58.568 33.333 0.00 0.00 31.60 3.58
2398 2497 9.224267 GTATTGCACATCTAAATCCTATGTCAT 57.776 33.333 0.00 0.00 31.60 3.06
2399 2498 8.701908 ATTGCACATCTAAATCCTATGTCATT 57.298 30.769 0.00 0.00 31.60 2.57
2400 2499 7.500720 TGCACATCTAAATCCTATGTCATTG 57.499 36.000 0.00 0.00 31.60 2.82
2401 2500 7.281841 TGCACATCTAAATCCTATGTCATTGA 58.718 34.615 0.00 0.00 31.60 2.57
2402 2501 7.940688 TGCACATCTAAATCCTATGTCATTGAT 59.059 33.333 0.00 0.00 31.60 2.57
2403 2502 8.790718 GCACATCTAAATCCTATGTCATTGATT 58.209 33.333 0.00 0.00 31.60 2.57
2409 2508 9.241317 CTAAATCCTATGTCATTGATTTTGTGC 57.759 33.333 19.73 0.00 38.17 4.57
2410 2509 7.414222 AATCCTATGTCATTGATTTTGTGCT 57.586 32.000 0.00 0.00 0.00 4.40
2411 2510 8.523915 AATCCTATGTCATTGATTTTGTGCTA 57.476 30.769 0.00 0.00 0.00 3.49
2412 2511 7.936496 TCCTATGTCATTGATTTTGTGCTAA 57.064 32.000 0.00 0.00 0.00 3.09
2413 2512 7.988737 TCCTATGTCATTGATTTTGTGCTAAG 58.011 34.615 0.00 0.00 0.00 2.18
2414 2513 7.828717 TCCTATGTCATTGATTTTGTGCTAAGA 59.171 33.333 0.00 0.00 0.00 2.10
2415 2514 8.627403 CCTATGTCATTGATTTTGTGCTAAGAT 58.373 33.333 0.00 0.00 0.00 2.40
2417 2516 8.922058 ATGTCATTGATTTTGTGCTAAGATTC 57.078 30.769 0.00 0.00 0.00 2.52
2418 2517 7.884257 TGTCATTGATTTTGTGCTAAGATTCA 58.116 30.769 0.00 0.00 0.00 2.57
2419 2518 8.525316 TGTCATTGATTTTGTGCTAAGATTCAT 58.475 29.630 0.00 0.00 0.00 2.57
2420 2519 8.804743 GTCATTGATTTTGTGCTAAGATTCATG 58.195 33.333 0.00 0.00 0.00 3.07
2421 2520 7.490079 TCATTGATTTTGTGCTAAGATTCATGC 59.510 33.333 0.00 0.00 0.00 4.06
2422 2521 6.270156 TGATTTTGTGCTAAGATTCATGCA 57.730 33.333 0.00 0.00 0.00 3.96
2423 2522 6.689554 TGATTTTGTGCTAAGATTCATGCAA 58.310 32.000 0.00 0.00 37.17 4.08
2424 2523 6.809689 TGATTTTGTGCTAAGATTCATGCAAG 59.190 34.615 0.00 0.00 37.17 4.01
2425 2524 3.770263 TGTGCTAAGATTCATGCAAGC 57.230 42.857 0.00 0.00 37.17 4.01
2426 2525 3.083293 TGTGCTAAGATTCATGCAAGCA 58.917 40.909 1.41 1.41 37.17 3.91
2427 2526 3.697542 TGTGCTAAGATTCATGCAAGCAT 59.302 39.130 8.55 0.86 41.53 3.79
2428 2527 4.158949 TGTGCTAAGATTCATGCAAGCATT 59.841 37.500 8.55 0.00 41.53 3.56
2429 2528 5.107133 GTGCTAAGATTCATGCAAGCATTT 58.893 37.500 8.55 0.00 41.53 2.32
2430 2529 5.579511 GTGCTAAGATTCATGCAAGCATTTT 59.420 36.000 8.55 0.00 41.53 1.82
2431 2530 6.091713 GTGCTAAGATTCATGCAAGCATTTTT 59.908 34.615 8.55 0.00 41.53 1.94
2472 2571 6.674694 ATTGATTGAGTCACTTAGATGTGC 57.325 37.500 0.00 0.00 36.32 4.57
2473 2572 5.151297 TGATTGAGTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
2474 2573 5.550290 TGATTGAGTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
2475 2574 6.175471 TGATTGAGTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
2476 2575 7.330262 TGATTGAGTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
2477 2576 7.823799 TGATTGAGTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
2478 2577 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
2479 2578 6.701340 TGAGTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
2480 2579 7.836842 TGAGTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
2481 2580 7.976175 TGAGTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
2482 2581 8.067751 AGTCACTTAGATGTGCAATAACTAGA 57.932 34.615 0.00 0.00 37.81 2.43
2483 2582 8.194104 AGTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
2484 2583 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
2485 2584 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
2504 2603 7.652524 AGAGCACATCTAGATGAGTCTTAAA 57.347 36.000 34.16 0.00 41.20 1.52
2505 2604 8.072321 AGAGCACATCTAGATGAGTCTTAAAA 57.928 34.615 34.16 0.00 41.20 1.52
2506 2605 8.535335 AGAGCACATCTAGATGAGTCTTAAAAA 58.465 33.333 34.16 0.00 41.20 1.94
2507 2606 9.323985 GAGCACATCTAGATGAGTCTTAAAAAT 57.676 33.333 34.16 8.73 41.20 1.82
2508 2607 9.107177 AGCACATCTAGATGAGTCTTAAAAATG 57.893 33.333 34.16 19.51 41.20 2.32
2509 2608 7.854916 GCACATCTAGATGAGTCTTAAAAATGC 59.145 37.037 34.16 24.09 41.20 3.56
2530 2629 9.760077 AAATGCCATTTTTCATATCAAGAGATC 57.240 29.630 0.00 0.00 35.67 2.75
2548 2647 4.739195 AGATCGTCTCTTCACTAAGCAAC 58.261 43.478 0.00 0.00 32.36 4.17
2559 2658 6.978080 TCTTCACTAAGCAACACCAATTTTTC 59.022 34.615 0.00 0.00 32.36 2.29
2562 2661 7.327214 TCACTAAGCAACACCAATTTTTCTTT 58.673 30.769 0.00 0.00 0.00 2.52
2563 2662 7.491048 TCACTAAGCAACACCAATTTTTCTTTC 59.509 33.333 0.00 0.00 0.00 2.62
2564 2663 7.492344 CACTAAGCAACACCAATTTTTCTTTCT 59.508 33.333 0.00 0.00 0.00 2.52
2565 2664 6.908870 AAGCAACACCAATTTTTCTTTCTC 57.091 33.333 0.00 0.00 0.00 2.87
2566 2665 6.225981 AGCAACACCAATTTTTCTTTCTCT 57.774 33.333 0.00 0.00 0.00 3.10
2568 2667 6.758416 AGCAACACCAATTTTTCTTTCTCTTC 59.242 34.615 0.00 0.00 0.00 2.87
2570 2669 6.790232 ACACCAATTTTTCTTTCTCTTCCA 57.210 33.333 0.00 0.00 0.00 3.53
2589 2689 6.265196 TCTTCCAACTCAAACATTATGCAACT 59.735 34.615 0.00 0.00 0.00 3.16
2607 2707 4.271687 CAACTGTTTCGTCTCCTTTTTCG 58.728 43.478 0.00 0.00 0.00 3.46
2609 2709 3.554731 ACTGTTTCGTCTCCTTTTTCGTC 59.445 43.478 0.00 0.00 0.00 4.20
2610 2710 2.867975 TGTTTCGTCTCCTTTTTCGTCC 59.132 45.455 0.00 0.00 0.00 4.79
2611 2711 2.159327 TTCGTCTCCTTTTTCGTCCC 57.841 50.000 0.00 0.00 0.00 4.46
2612 2712 1.335145 TCGTCTCCTTTTTCGTCCCT 58.665 50.000 0.00 0.00 0.00 4.20
2613 2713 2.517959 TCGTCTCCTTTTTCGTCCCTA 58.482 47.619 0.00 0.00 0.00 3.53
2614 2714 2.892852 TCGTCTCCTTTTTCGTCCCTAA 59.107 45.455 0.00 0.00 0.00 2.69
2615 2715 3.512724 TCGTCTCCTTTTTCGTCCCTAAT 59.487 43.478 0.00 0.00 0.00 1.73
2616 2716 3.864003 CGTCTCCTTTTTCGTCCCTAATC 59.136 47.826 0.00 0.00 0.00 1.75
2617 2717 4.190001 GTCTCCTTTTTCGTCCCTAATCC 58.810 47.826 0.00 0.00 0.00 3.01
2618 2718 4.081031 GTCTCCTTTTTCGTCCCTAATCCT 60.081 45.833 0.00 0.00 0.00 3.24
2619 2719 5.128335 GTCTCCTTTTTCGTCCCTAATCCTA 59.872 44.000 0.00 0.00 0.00 2.94
2620 2720 5.363005 TCTCCTTTTTCGTCCCTAATCCTAG 59.637 44.000 0.00 0.00 0.00 3.02
2621 2721 4.407945 TCCTTTTTCGTCCCTAATCCTAGG 59.592 45.833 0.82 0.82 44.10 3.02
2622 2722 4.163649 CCTTTTTCGTCCCTAATCCTAGGT 59.836 45.833 9.08 0.00 43.08 3.08
2623 2723 4.748277 TTTTCGTCCCTAATCCTAGGTG 57.252 45.455 9.08 0.00 43.08 4.00
2624 2724 2.376695 TCGTCCCTAATCCTAGGTGG 57.623 55.000 9.08 7.22 43.08 4.61
2625 2725 0.680061 CGTCCCTAATCCTAGGTGGC 59.320 60.000 9.08 0.05 43.08 5.01
2626 2726 1.758123 CGTCCCTAATCCTAGGTGGCT 60.758 57.143 9.08 0.00 43.08 4.75
2627 2727 2.490351 CGTCCCTAATCCTAGGTGGCTA 60.490 54.545 9.08 0.00 43.08 3.93
2628 2728 3.166679 GTCCCTAATCCTAGGTGGCTAG 58.833 54.545 9.08 5.59 43.08 3.42
2629 2729 2.111972 TCCCTAATCCTAGGTGGCTAGG 59.888 54.545 9.08 13.38 43.08 3.02
2630 2730 2.541466 CCTAATCCTAGGTGGCTAGGG 58.459 57.143 9.08 0.03 44.94 3.53
2631 2731 1.903183 CTAATCCTAGGTGGCTAGGGC 59.097 57.143 9.08 0.00 44.94 5.19
2632 2732 0.030092 AATCCTAGGTGGCTAGGGCA 60.030 55.000 9.08 0.00 44.94 5.36
2633 2733 0.030092 ATCCTAGGTGGCTAGGGCAA 60.030 55.000 9.08 0.00 44.94 4.52
2634 2734 0.252974 TCCTAGGTGGCTAGGGCAAA 60.253 55.000 9.08 0.00 44.94 3.68
2635 2735 0.107165 CCTAGGTGGCTAGGGCAAAC 60.107 60.000 0.00 0.00 42.02 2.93
2636 2736 0.107165 CTAGGTGGCTAGGGCAAACC 60.107 60.000 0.00 0.00 43.06 3.27
2658 2758 3.727387 CCCCCAGACTTCATCGGT 58.273 61.111 0.00 0.00 0.00 4.69
2659 2759 1.221840 CCCCCAGACTTCATCGGTG 59.778 63.158 0.00 0.00 0.00 4.94
2660 2760 1.264749 CCCCCAGACTTCATCGGTGA 61.265 60.000 0.00 0.00 0.00 4.02
2661 2761 0.176680 CCCCAGACTTCATCGGTGAG 59.823 60.000 0.00 0.00 35.39 3.51
2662 2762 0.898320 CCCAGACTTCATCGGTGAGT 59.102 55.000 0.00 0.00 35.39 3.41
2663 2763 1.134965 CCCAGACTTCATCGGTGAGTC 60.135 57.143 16.01 16.01 35.39 3.36
2664 2764 1.134965 CCAGACTTCATCGGTGAGTCC 60.135 57.143 18.60 5.29 35.20 3.85
2676 2776 1.997669 GTGAGTCCGTGATTCACCTC 58.002 55.000 11.12 11.72 41.38 3.85
2677 2777 0.895530 TGAGTCCGTGATTCACCTCC 59.104 55.000 11.12 0.00 0.00 4.30
2678 2778 0.175989 GAGTCCGTGATTCACCTCCC 59.824 60.000 11.12 0.00 0.00 4.30
2679 2779 1.221021 GTCCGTGATTCACCTCCCC 59.779 63.158 11.12 0.00 0.00 4.81
2689 3051 2.204059 ACCTCCCCTCTGCTTGCT 60.204 61.111 0.00 0.00 0.00 3.91
2694 3056 2.438075 CCCTCTGCTTGCTGCTCC 60.438 66.667 0.00 0.00 43.37 4.70
2695 3057 2.818714 CCTCTGCTTGCTGCTCCG 60.819 66.667 0.00 0.00 43.37 4.63
2726 3088 0.179000 CGGGAAGGAGAATGTCAGGG 59.821 60.000 0.00 0.00 0.00 4.45
2761 3123 3.918258 TTCGACACTTCAAACACTTCG 57.082 42.857 0.00 0.00 0.00 3.79
2763 3125 1.653679 CGACACTTCAAACACTTCGCG 60.654 52.381 0.00 0.00 0.00 5.87
2773 3135 1.137513 ACACTTCGCGAGTTAAGCAC 58.862 50.000 9.59 0.00 36.10 4.40
2774 3136 0.438830 CACTTCGCGAGTTAAGCACC 59.561 55.000 9.59 0.00 36.10 5.01
2775 3137 0.032952 ACTTCGCGAGTTAAGCACCA 59.967 50.000 9.59 0.00 33.92 4.17
2776 3138 0.716108 CTTCGCGAGTTAAGCACCAG 59.284 55.000 9.59 0.00 34.19 4.00
2784 3146 1.852965 AGTTAAGCACCAGCCCCATAT 59.147 47.619 0.00 0.00 43.56 1.78
2785 3147 2.244769 AGTTAAGCACCAGCCCCATATT 59.755 45.455 0.00 0.00 43.56 1.28
2794 3156 2.358090 CCAGCCCCATATTGGTTCAAGA 60.358 50.000 0.00 0.00 35.17 3.02
2808 3170 6.349243 TGGTTCAAGAGAATTCAAATGCAT 57.651 33.333 8.44 0.00 35.92 3.96
2833 3195 1.427809 AGATCTTCATCCGATGGCCA 58.572 50.000 8.56 8.56 0.00 5.36
2845 3207 0.326264 GATGGCCAGGACACTCACTT 59.674 55.000 13.05 0.00 0.00 3.16
2854 3216 1.337821 GACACTCACTTACCGCTTCG 58.662 55.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.132658 AGACAGTAGCTCTTCTGGATGATAA 58.867 40.000 14.81 0.00 36.17 1.75
2 3 5.700183 AGACAGTAGCTCTTCTGGATGATA 58.300 41.667 14.81 0.00 36.17 2.15
3 4 4.545678 AGACAGTAGCTCTTCTGGATGAT 58.454 43.478 14.81 0.00 36.17 2.45
4 5 3.974719 AGACAGTAGCTCTTCTGGATGA 58.025 45.455 14.81 0.00 36.17 2.92
5 6 4.431809 CAAGACAGTAGCTCTTCTGGATG 58.568 47.826 14.81 8.61 36.17 3.51
6 7 3.118811 GCAAGACAGTAGCTCTTCTGGAT 60.119 47.826 14.81 3.82 36.17 3.41
8 9 2.615869 GCAAGACAGTAGCTCTTCTGG 58.384 52.381 14.81 2.36 36.17 3.86
9 10 2.257894 CGCAAGACAGTAGCTCTTCTG 58.742 52.381 10.57 10.57 43.02 3.02
10 11 1.403514 GCGCAAGACAGTAGCTCTTCT 60.404 52.381 0.30 0.00 43.02 2.85
11 12 0.995728 GCGCAAGACAGTAGCTCTTC 59.004 55.000 0.30 0.00 43.02 2.87
12 13 0.318441 TGCGCAAGACAGTAGCTCTT 59.682 50.000 8.16 0.00 43.02 2.85
13 14 0.389166 GTGCGCAAGACAGTAGCTCT 60.389 55.000 14.00 0.00 43.02 4.09
14 15 1.678269 CGTGCGCAAGACAGTAGCTC 61.678 60.000 19.03 0.00 43.02 4.09
15 16 1.734477 CGTGCGCAAGACAGTAGCT 60.734 57.895 19.03 0.00 43.02 3.32
16 17 1.678269 CTCGTGCGCAAGACAGTAGC 61.678 60.000 22.28 0.00 43.02 3.58
17 18 0.387367 ACTCGTGCGCAAGACAGTAG 60.387 55.000 22.28 14.21 43.02 2.57
18 19 0.031585 AACTCGTGCGCAAGACAGTA 59.968 50.000 22.28 1.48 43.02 2.74
19 20 0.810031 AAACTCGTGCGCAAGACAGT 60.810 50.000 22.28 16.31 43.02 3.55
20 21 0.383491 CAAACTCGTGCGCAAGACAG 60.383 55.000 22.28 15.64 43.02 3.51
21 22 1.641140 CAAACTCGTGCGCAAGACA 59.359 52.632 22.28 3.06 43.02 3.41
22 23 1.722507 GCAAACTCGTGCGCAAGAC 60.723 57.895 22.28 8.48 43.02 3.01
23 24 2.631428 GCAAACTCGTGCGCAAGA 59.369 55.556 24.30 24.30 43.02 3.02
29 30 2.005537 CAACGCTGCAAACTCGTGC 61.006 57.895 0.00 0.00 45.15 5.34
30 31 0.654472 GACAACGCTGCAAACTCGTG 60.654 55.000 0.00 0.00 36.49 4.35
31 32 1.641677 GACAACGCTGCAAACTCGT 59.358 52.632 0.00 0.00 38.15 4.18
32 33 1.082756 GGACAACGCTGCAAACTCG 60.083 57.895 0.00 0.00 0.00 4.18
33 34 0.040958 CTGGACAACGCTGCAAACTC 60.041 55.000 0.00 0.00 0.00 3.01
34 35 0.463654 TCTGGACAACGCTGCAAACT 60.464 50.000 0.00 0.00 0.00 2.66
35 36 0.380378 TTCTGGACAACGCTGCAAAC 59.620 50.000 0.00 0.00 0.00 2.93
36 37 0.380378 GTTCTGGACAACGCTGCAAA 59.620 50.000 0.00 0.00 0.00 3.68
37 38 0.463654 AGTTCTGGACAACGCTGCAA 60.464 50.000 0.00 0.00 0.00 4.08
38 39 0.463654 AAGTTCTGGACAACGCTGCA 60.464 50.000 0.00 0.00 0.00 4.41
39 40 0.235926 GAAGTTCTGGACAACGCTGC 59.764 55.000 0.00 0.00 0.00 5.25
40 41 1.528586 CAGAAGTTCTGGACAACGCTG 59.471 52.381 22.95 0.00 40.71 5.18
41 42 1.871080 CAGAAGTTCTGGACAACGCT 58.129 50.000 22.95 0.00 40.71 5.07
50 51 3.760580 ACTTGACTCCCAGAAGTTCTG 57.239 47.619 23.58 23.58 43.91 3.02
51 52 4.779993 AAACTTGACTCCCAGAAGTTCT 57.220 40.909 0.00 0.00 38.64 3.01
52 53 4.881850 TCAAAACTTGACTCCCAGAAGTTC 59.118 41.667 0.00 0.00 38.64 3.01
53 54 4.855340 TCAAAACTTGACTCCCAGAAGTT 58.145 39.130 0.00 0.00 40.77 2.66
54 55 4.503714 TCAAAACTTGACTCCCAGAAGT 57.496 40.909 0.00 0.00 34.08 3.01
55 56 5.123027 GCTATCAAAACTTGACTCCCAGAAG 59.877 44.000 0.00 0.00 43.48 2.85
56 57 5.003804 GCTATCAAAACTTGACTCCCAGAA 58.996 41.667 0.00 0.00 43.48 3.02
57 58 4.287067 AGCTATCAAAACTTGACTCCCAGA 59.713 41.667 0.00 0.00 43.48 3.86
58 59 4.583871 AGCTATCAAAACTTGACTCCCAG 58.416 43.478 0.00 0.00 43.48 4.45
59 60 4.640771 AGCTATCAAAACTTGACTCCCA 57.359 40.909 0.00 0.00 43.48 4.37
60 61 5.978814 TCTAGCTATCAAAACTTGACTCCC 58.021 41.667 0.00 0.00 43.48 4.30
61 62 6.635755 ACTCTAGCTATCAAAACTTGACTCC 58.364 40.000 0.00 0.00 43.48 3.85
62 63 7.276878 GGAACTCTAGCTATCAAAACTTGACTC 59.723 40.741 0.00 0.00 43.48 3.36
63 64 7.100409 GGAACTCTAGCTATCAAAACTTGACT 58.900 38.462 0.00 0.00 43.48 3.41
64 65 6.035112 CGGAACTCTAGCTATCAAAACTTGAC 59.965 42.308 0.00 0.00 43.48 3.18
65 66 6.100004 CGGAACTCTAGCTATCAAAACTTGA 58.900 40.000 0.00 0.00 45.01 3.02
66 67 5.292101 CCGGAACTCTAGCTATCAAAACTTG 59.708 44.000 0.00 0.00 0.00 3.16
67 68 5.420409 CCGGAACTCTAGCTATCAAAACTT 58.580 41.667 0.00 0.00 0.00 2.66
68 69 4.141914 CCCGGAACTCTAGCTATCAAAACT 60.142 45.833 0.73 0.00 0.00 2.66
69 70 4.120589 CCCGGAACTCTAGCTATCAAAAC 58.879 47.826 0.73 0.00 0.00 2.43
70 71 3.431766 GCCCGGAACTCTAGCTATCAAAA 60.432 47.826 0.73 0.00 0.00 2.44
71 72 2.102588 GCCCGGAACTCTAGCTATCAAA 59.897 50.000 0.73 0.00 0.00 2.69
72 73 1.687123 GCCCGGAACTCTAGCTATCAA 59.313 52.381 0.73 0.00 0.00 2.57
73 74 1.329256 GCCCGGAACTCTAGCTATCA 58.671 55.000 0.73 0.00 0.00 2.15
74 75 1.329256 TGCCCGGAACTCTAGCTATC 58.671 55.000 0.73 0.00 0.00 2.08
75 76 1.413077 GTTGCCCGGAACTCTAGCTAT 59.587 52.381 0.73 0.00 0.00 2.97
76 77 0.822164 GTTGCCCGGAACTCTAGCTA 59.178 55.000 0.73 0.00 0.00 3.32
77 78 1.597461 GTTGCCCGGAACTCTAGCT 59.403 57.895 0.73 0.00 0.00 3.32
78 79 1.449778 GGTTGCCCGGAACTCTAGC 60.450 63.158 0.73 0.00 0.00 3.42
79 80 0.613777 AAGGTTGCCCGGAACTCTAG 59.386 55.000 0.73 0.00 35.12 2.43
80 81 0.323629 CAAGGTTGCCCGGAACTCTA 59.676 55.000 0.73 0.00 35.12 2.43
81 82 1.073199 CAAGGTTGCCCGGAACTCT 59.927 57.895 0.73 0.00 35.12 3.24
82 83 1.228154 ACAAGGTTGCCCGGAACTC 60.228 57.895 0.73 0.00 35.12 3.01
83 84 1.228154 GACAAGGTTGCCCGGAACT 60.228 57.895 0.73 0.00 35.12 3.01
84 85 2.265904 GGACAAGGTTGCCCGGAAC 61.266 63.158 0.73 0.00 35.12 3.62
85 86 2.114411 GGACAAGGTTGCCCGGAA 59.886 61.111 0.73 0.00 35.12 4.30
91 92 1.675641 ATCAGGCGGACAAGGTTGC 60.676 57.895 0.00 0.00 0.00 4.17
92 93 1.926511 GCATCAGGCGGACAAGGTTG 61.927 60.000 0.00 0.00 0.00 3.77
93 94 1.675641 GCATCAGGCGGACAAGGTT 60.676 57.895 0.00 0.00 0.00 3.50
94 95 2.045926 GCATCAGGCGGACAAGGT 60.046 61.111 0.00 0.00 0.00 3.50
114 115 5.055265 TCCCTGGTTTGATTACAGTCAAA 57.945 39.130 0.00 0.00 43.66 2.69
115 116 4.104102 ACTCCCTGGTTTGATTACAGTCAA 59.896 41.667 0.00 0.00 36.38 3.18
116 117 3.650942 ACTCCCTGGTTTGATTACAGTCA 59.349 43.478 0.00 0.00 0.00 3.41
117 118 4.287766 ACTCCCTGGTTTGATTACAGTC 57.712 45.455 0.00 0.00 0.00 3.51
118 119 5.309806 AGTTACTCCCTGGTTTGATTACAGT 59.690 40.000 0.00 0.00 0.00 3.55
119 120 5.805728 AGTTACTCCCTGGTTTGATTACAG 58.194 41.667 0.00 0.00 0.00 2.74
120 121 5.836024 AGTTACTCCCTGGTTTGATTACA 57.164 39.130 0.00 0.00 0.00 2.41
121 122 7.392418 AGTAAGTTACTCCCTGGTTTGATTAC 58.608 38.462 9.85 0.00 32.47 1.89
122 123 7.563724 AGTAAGTTACTCCCTGGTTTGATTA 57.436 36.000 9.85 0.00 32.47 1.75
123 124 6.449830 AGTAAGTTACTCCCTGGTTTGATT 57.550 37.500 9.85 0.00 32.47 2.57
203 204 9.715123 CAATGAAACGCAAAGTATGTATCATAA 57.285 29.630 0.00 0.00 0.00 1.90
204 205 8.341903 CCAATGAAACGCAAAGTATGTATCATA 58.658 33.333 0.00 0.00 0.00 2.15
205 206 7.148086 ACCAATGAAACGCAAAGTATGTATCAT 60.148 33.333 0.00 0.00 0.00 2.45
206 207 6.150307 ACCAATGAAACGCAAAGTATGTATCA 59.850 34.615 0.00 0.00 0.00 2.15
207 208 6.551736 ACCAATGAAACGCAAAGTATGTATC 58.448 36.000 0.00 0.00 0.00 2.24
208 209 6.509418 ACCAATGAAACGCAAAGTATGTAT 57.491 33.333 0.00 0.00 0.00 2.29
209 210 5.950758 ACCAATGAAACGCAAAGTATGTA 57.049 34.783 0.00 0.00 0.00 2.29
210 211 4.846779 ACCAATGAAACGCAAAGTATGT 57.153 36.364 0.00 0.00 0.00 2.29
211 212 7.630470 TTTAACCAATGAAACGCAAAGTATG 57.370 32.000 0.00 0.00 0.00 2.39
212 213 8.825667 AATTTAACCAATGAAACGCAAAGTAT 57.174 26.923 0.00 0.00 0.00 2.12
213 214 8.649973 AAATTTAACCAATGAAACGCAAAGTA 57.350 26.923 0.00 0.00 0.00 2.24
214 215 7.546778 AAATTTAACCAATGAAACGCAAAGT 57.453 28.000 0.00 0.00 0.00 2.66
215 216 9.527566 CATAAATTTAACCAATGAAACGCAAAG 57.472 29.630 1.21 0.00 0.00 2.77
216 217 8.499162 CCATAAATTTAACCAATGAAACGCAAA 58.501 29.630 1.21 0.00 0.00 3.68
217 218 7.657761 ACCATAAATTTAACCAATGAAACGCAA 59.342 29.630 1.21 0.00 0.00 4.85
218 219 7.155328 ACCATAAATTTAACCAATGAAACGCA 58.845 30.769 1.21 0.00 0.00 5.24
219 220 7.329717 TGACCATAAATTTAACCAATGAAACGC 59.670 33.333 1.21 0.00 0.00 4.84
220 221 8.749841 TGACCATAAATTTAACCAATGAAACG 57.250 30.769 1.21 0.00 0.00 3.60
223 224 9.495572 GGTTTGACCATAAATTTAACCAATGAA 57.504 29.630 10.54 0.00 38.42 2.57
224 225 8.875168 AGGTTTGACCATAAATTTAACCAATGA 58.125 29.630 15.65 0.00 41.95 2.57
237 238 8.303876 GCTTTTGAGATTTAGGTTTGACCATAA 58.696 33.333 0.00 0.00 41.95 1.90
238 239 7.450014 TGCTTTTGAGATTTAGGTTTGACCATA 59.550 33.333 0.00 0.00 41.95 2.74
239 240 6.267471 TGCTTTTGAGATTTAGGTTTGACCAT 59.733 34.615 0.00 0.00 41.95 3.55
240 241 5.596361 TGCTTTTGAGATTTAGGTTTGACCA 59.404 36.000 0.00 0.00 41.95 4.02
241 242 5.920840 GTGCTTTTGAGATTTAGGTTTGACC 59.079 40.000 0.00 0.00 38.99 4.02
242 243 5.625311 CGTGCTTTTGAGATTTAGGTTTGAC 59.375 40.000 0.00 0.00 0.00 3.18
243 244 5.757886 CGTGCTTTTGAGATTTAGGTTTGA 58.242 37.500 0.00 0.00 0.00 2.69
244 245 4.382754 GCGTGCTTTTGAGATTTAGGTTTG 59.617 41.667 0.00 0.00 0.00 2.93
245 246 4.037446 TGCGTGCTTTTGAGATTTAGGTTT 59.963 37.500 0.00 0.00 0.00 3.27
246 247 3.568007 TGCGTGCTTTTGAGATTTAGGTT 59.432 39.130 0.00 0.00 0.00 3.50
247 248 3.058224 GTGCGTGCTTTTGAGATTTAGGT 60.058 43.478 0.00 0.00 0.00 3.08
248 249 3.492313 GTGCGTGCTTTTGAGATTTAGG 58.508 45.455 0.00 0.00 0.00 2.69
249 250 3.155998 CGTGCGTGCTTTTGAGATTTAG 58.844 45.455 0.00 0.00 0.00 1.85
250 251 2.664424 GCGTGCGTGCTTTTGAGATTTA 60.664 45.455 0.00 0.00 0.00 1.40
251 252 1.925946 GCGTGCGTGCTTTTGAGATTT 60.926 47.619 0.00 0.00 0.00 2.17
252 253 0.385974 GCGTGCGTGCTTTTGAGATT 60.386 50.000 0.00 0.00 0.00 2.40
253 254 1.207593 GCGTGCGTGCTTTTGAGAT 59.792 52.632 0.00 0.00 0.00 2.75
254 255 1.506309 ATGCGTGCGTGCTTTTGAGA 61.506 50.000 1.52 0.00 35.36 3.27
255 256 0.661187 AATGCGTGCGTGCTTTTGAG 60.661 50.000 1.52 0.00 35.36 3.02
256 257 0.588737 TAATGCGTGCGTGCTTTTGA 59.411 45.000 6.46 0.00 34.51 2.69
257 258 0.702383 GTAATGCGTGCGTGCTTTTG 59.298 50.000 6.46 0.00 34.51 2.44
258 259 0.309302 TGTAATGCGTGCGTGCTTTT 59.691 45.000 6.46 1.60 34.51 2.27
259 260 0.521291 ATGTAATGCGTGCGTGCTTT 59.479 45.000 1.52 4.28 36.38 3.51
260 261 0.521291 AATGTAATGCGTGCGTGCTT 59.479 45.000 1.52 0.00 35.36 3.91
261 262 0.179192 CAATGTAATGCGTGCGTGCT 60.179 50.000 1.52 0.00 35.36 4.40
262 263 0.454285 ACAATGTAATGCGTGCGTGC 60.454 50.000 0.00 0.00 0.00 5.34
263 264 1.249598 CACAATGTAATGCGTGCGTG 58.750 50.000 0.00 0.00 0.00 5.34
264 265 0.167908 CCACAATGTAATGCGTGCGT 59.832 50.000 0.00 0.00 31.22 5.24
265 266 0.445829 TCCACAATGTAATGCGTGCG 59.554 50.000 0.00 0.00 31.22 5.34
266 267 2.627863 TTCCACAATGTAATGCGTGC 57.372 45.000 0.00 0.00 31.22 5.34
267 268 3.128415 TCCATTCCACAATGTAATGCGTG 59.872 43.478 3.91 0.00 38.22 5.34
268 269 3.351740 TCCATTCCACAATGTAATGCGT 58.648 40.909 3.91 0.00 38.22 5.24
269 270 3.243168 CCTCCATTCCACAATGTAATGCG 60.243 47.826 3.91 0.00 38.22 4.73
270 271 3.068590 CCCTCCATTCCACAATGTAATGC 59.931 47.826 3.91 0.00 38.22 3.56
271 272 4.535781 TCCCTCCATTCCACAATGTAATG 58.464 43.478 2.70 2.70 38.22 1.90
272 273 4.230502 ACTCCCTCCATTCCACAATGTAAT 59.769 41.667 0.00 0.00 38.22 1.89
273 274 3.591527 ACTCCCTCCATTCCACAATGTAA 59.408 43.478 0.00 0.00 38.22 2.41
274 275 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
275 276 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
276 277 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
277 278 3.736094 TCTACTCCCTCCATTCCACAAT 58.264 45.455 0.00 0.00 0.00 2.71
278 279 3.199442 TCTACTCCCTCCATTCCACAA 57.801 47.619 0.00 0.00 0.00 3.33
279 280 2.940514 TCTACTCCCTCCATTCCACA 57.059 50.000 0.00 0.00 0.00 4.17
280 281 4.019231 ACTTTTCTACTCCCTCCATTCCAC 60.019 45.833 0.00 0.00 0.00 4.02
281 282 4.019321 CACTTTTCTACTCCCTCCATTCCA 60.019 45.833 0.00 0.00 0.00 3.53
282 283 4.518249 CACTTTTCTACTCCCTCCATTCC 58.482 47.826 0.00 0.00 0.00 3.01
283 284 4.225267 TCCACTTTTCTACTCCCTCCATTC 59.775 45.833 0.00 0.00 0.00 2.67
284 285 4.175962 TCCACTTTTCTACTCCCTCCATT 58.824 43.478 0.00 0.00 0.00 3.16
285 286 3.777522 CTCCACTTTTCTACTCCCTCCAT 59.222 47.826 0.00 0.00 0.00 3.41
286 287 3.173965 CTCCACTTTTCTACTCCCTCCA 58.826 50.000 0.00 0.00 0.00 3.86
287 288 3.442076 TCTCCACTTTTCTACTCCCTCC 58.558 50.000 0.00 0.00 0.00 4.30
288 289 4.100344 GGATCTCCACTTTTCTACTCCCTC 59.900 50.000 0.00 0.00 35.64 4.30
289 290 4.034410 GGATCTCCACTTTTCTACTCCCT 58.966 47.826 0.00 0.00 35.64 4.20
290 291 3.775316 TGGATCTCCACTTTTCTACTCCC 59.225 47.826 0.00 0.00 42.01 4.30
291 292 4.712337 TCTGGATCTCCACTTTTCTACTCC 59.288 45.833 0.00 0.00 42.01 3.85
292 293 5.923733 TCTGGATCTCCACTTTTCTACTC 57.076 43.478 0.00 0.00 42.01 2.59
293 294 5.960811 TCATCTGGATCTCCACTTTTCTACT 59.039 40.000 0.00 0.00 42.01 2.57
294 295 6.045955 GTCATCTGGATCTCCACTTTTCTAC 58.954 44.000 0.00 0.00 42.01 2.59
295 296 5.960811 AGTCATCTGGATCTCCACTTTTCTA 59.039 40.000 0.00 0.00 42.01 2.10
296 297 4.782156 AGTCATCTGGATCTCCACTTTTCT 59.218 41.667 0.00 0.00 42.01 2.52
297 298 5.096443 AGTCATCTGGATCTCCACTTTTC 57.904 43.478 0.00 0.00 42.01 2.29
298 299 4.382470 CGAGTCATCTGGATCTCCACTTTT 60.382 45.833 0.00 0.00 42.01 2.27
299 300 3.131933 CGAGTCATCTGGATCTCCACTTT 59.868 47.826 0.00 0.00 42.01 2.66
300 301 2.692557 CGAGTCATCTGGATCTCCACTT 59.307 50.000 0.00 0.00 42.01 3.16
301 302 2.305928 CGAGTCATCTGGATCTCCACT 58.694 52.381 0.00 0.00 42.01 4.00
302 303 1.269517 GCGAGTCATCTGGATCTCCAC 60.270 57.143 0.00 0.00 42.01 4.02
303 304 1.035923 GCGAGTCATCTGGATCTCCA 58.964 55.000 0.00 0.00 45.30 3.86
304 305 1.035923 TGCGAGTCATCTGGATCTCC 58.964 55.000 0.00 0.00 0.00 3.71
305 306 2.468831 GTTGCGAGTCATCTGGATCTC 58.531 52.381 0.00 0.00 0.00 2.75
306 307 1.202348 CGTTGCGAGTCATCTGGATCT 60.202 52.381 0.00 0.00 0.00 2.75
307 308 1.202302 TCGTTGCGAGTCATCTGGATC 60.202 52.381 0.00 0.00 0.00 3.36
308 309 0.817654 TCGTTGCGAGTCATCTGGAT 59.182 50.000 0.00 0.00 0.00 3.41
309 310 0.109272 GTCGTTGCGAGTCATCTGGA 60.109 55.000 0.00 0.00 36.23 3.86
310 311 0.388520 TGTCGTTGCGAGTCATCTGG 60.389 55.000 0.00 0.00 36.23 3.86
311 312 1.388093 CTTGTCGTTGCGAGTCATCTG 59.612 52.381 0.00 0.00 36.23 2.90
312 313 1.269723 TCTTGTCGTTGCGAGTCATCT 59.730 47.619 0.00 0.00 36.23 2.90
313 314 1.698165 TCTTGTCGTTGCGAGTCATC 58.302 50.000 0.00 0.00 36.23 2.92
314 315 2.370281 ATCTTGTCGTTGCGAGTCAT 57.630 45.000 0.00 0.00 36.23 3.06
315 316 2.486592 TCTATCTTGTCGTTGCGAGTCA 59.513 45.455 0.00 0.00 36.23 3.41
316 317 2.847133 GTCTATCTTGTCGTTGCGAGTC 59.153 50.000 0.00 0.00 36.23 3.36
317 318 2.728225 CGTCTATCTTGTCGTTGCGAGT 60.728 50.000 0.00 0.00 36.23 4.18
318 319 1.840741 CGTCTATCTTGTCGTTGCGAG 59.159 52.381 0.00 0.00 36.23 5.03
319 320 1.198408 ACGTCTATCTTGTCGTTGCGA 59.802 47.619 0.00 0.00 32.62 5.10
320 321 1.578023 GACGTCTATCTTGTCGTTGCG 59.422 52.381 8.70 0.00 36.67 4.85
321 322 1.918609 GGACGTCTATCTTGTCGTTGC 59.081 52.381 16.46 0.00 36.67 4.17
322 323 2.163815 AGGGACGTCTATCTTGTCGTTG 59.836 50.000 16.46 0.00 36.67 4.10
323 324 2.163815 CAGGGACGTCTATCTTGTCGTT 59.836 50.000 16.46 0.00 36.67 3.85
324 325 1.743958 CAGGGACGTCTATCTTGTCGT 59.256 52.381 16.46 0.00 39.21 4.34
325 326 1.534175 GCAGGGACGTCTATCTTGTCG 60.534 57.143 16.46 1.09 33.45 4.35
326 327 1.202428 GGCAGGGACGTCTATCTTGTC 60.202 57.143 16.46 3.33 0.00 3.18
327 328 0.824759 GGCAGGGACGTCTATCTTGT 59.175 55.000 16.46 0.00 0.00 3.16
328 329 1.067821 GAGGCAGGGACGTCTATCTTG 59.932 57.143 16.46 6.78 0.00 3.02
329 330 1.404843 GAGGCAGGGACGTCTATCTT 58.595 55.000 16.46 0.00 0.00 2.40
330 331 0.820074 CGAGGCAGGGACGTCTATCT 60.820 60.000 16.46 8.06 0.00 1.98
331 332 1.655329 CGAGGCAGGGACGTCTATC 59.345 63.158 16.46 5.79 0.00 2.08
332 333 1.828660 CCGAGGCAGGGACGTCTAT 60.829 63.158 16.46 0.93 0.00 1.98
333 334 2.439701 CCGAGGCAGGGACGTCTA 60.440 66.667 16.46 0.00 0.00 2.59
346 347 2.328099 GCAACACCTCCTTGCCGAG 61.328 63.158 0.00 0.00 38.48 4.63
347 348 2.281484 GCAACACCTCCTTGCCGA 60.281 61.111 0.00 0.00 38.48 5.54
348 349 2.192861 TTGCAACACCTCCTTGCCG 61.193 57.895 0.00 0.00 42.91 5.69
349 350 1.363807 GTTGCAACACCTCCTTGCC 59.636 57.895 24.52 0.00 42.91 4.52
350 351 1.008538 CGTTGCAACACCTCCTTGC 60.009 57.895 28.01 0.00 43.69 4.01
351 352 1.008538 GCGTTGCAACACCTCCTTG 60.009 57.895 28.01 10.97 0.00 3.61
352 353 2.542907 CGCGTTGCAACACCTCCTT 61.543 57.895 28.01 0.00 0.00 3.36
353 354 2.972505 CGCGTTGCAACACCTCCT 60.973 61.111 28.01 0.00 0.00 3.69
354 355 2.954753 CTCGCGTTGCAACACCTCC 61.955 63.158 28.01 10.09 0.00 4.30
355 356 2.551270 CTCGCGTTGCAACACCTC 59.449 61.111 28.01 12.99 0.00 3.85
356 357 3.649986 GCTCGCGTTGCAACACCT 61.650 61.111 28.01 0.00 0.00 4.00
357 358 3.649986 AGCTCGCGTTGCAACACC 61.650 61.111 28.01 17.08 0.00 4.16
358 359 2.373524 TTCAGCTCGCGTTGCAACAC 62.374 55.000 28.01 18.43 0.00 3.32
359 360 2.176926 TTCAGCTCGCGTTGCAACA 61.177 52.632 28.01 9.07 0.00 3.33
360 361 1.722507 GTTCAGCTCGCGTTGCAAC 60.723 57.895 19.89 19.89 0.00 4.17
451 474 2.111756 GCTGCTTCGTTGTTCAAACAG 58.888 47.619 0.00 0.00 40.50 3.16
453 476 2.111756 CTGCTGCTTCGTTGTTCAAAC 58.888 47.619 0.00 0.00 0.00 2.93
456 479 0.937304 GACTGCTGCTTCGTTGTTCA 59.063 50.000 0.00 0.00 0.00 3.18
479 502 2.540515 CACACACGTCAACTCAAGAGT 58.459 47.619 0.00 0.00 44.94 3.24
481 504 1.206132 ACCACACACGTCAACTCAAGA 59.794 47.619 0.00 0.00 0.00 3.02
482 505 1.651987 ACCACACACGTCAACTCAAG 58.348 50.000 0.00 0.00 0.00 3.02
483 506 2.542597 GTACCACACACGTCAACTCAA 58.457 47.619 0.00 0.00 0.00 3.02
484 507 1.202440 GGTACCACACACGTCAACTCA 60.202 52.381 7.15 0.00 0.00 3.41
485 508 1.494824 GGTACCACACACGTCAACTC 58.505 55.000 7.15 0.00 0.00 3.01
486 509 3.673173 GGTACCACACACGTCAACT 57.327 52.632 7.15 0.00 0.00 3.16
554 578 2.037136 CCTCGAAGCAACCCAGCAG 61.037 63.158 0.00 0.00 36.85 4.24
565 589 2.734673 GCAGCTCGTTGCCTCGAAG 61.735 63.158 2.33 0.00 44.23 3.79
689 720 2.033194 CCGAAAGAAGGACACGGCC 61.033 63.158 0.00 0.00 37.32 6.13
717 750 2.588034 GGCACGTCGGGGATTAGC 60.588 66.667 0.00 0.00 0.00 3.09
718 751 1.520787 GTGGCACGTCGGGGATTAG 60.521 63.158 0.00 0.00 0.00 1.73
720 753 2.478335 AATGTGGCACGTCGGGGATT 62.478 55.000 13.63 1.94 0.00 3.01
722 755 3.632080 AATGTGGCACGTCGGGGA 61.632 61.111 13.63 0.00 0.00 4.81
723 756 3.430862 CAATGTGGCACGTCGGGG 61.431 66.667 13.63 0.00 0.00 5.73
876 917 2.221169 TGCAGTGAAGTGTGATGAACC 58.779 47.619 0.00 0.00 0.00 3.62
899 940 4.521062 CGAGAGCCGAGGCCTTGG 62.521 72.222 32.49 32.49 43.17 3.61
923 964 2.435586 CAGAAGCCGCAGTGAGGG 60.436 66.667 15.28 5.66 0.00 4.30
933 974 3.931578 TCTCTTTTCACTAGCAGAAGCC 58.068 45.455 0.00 0.00 43.56 4.35
967 1012 5.896678 TCTTTCTATCTCTCTTTCAGGAGGG 59.103 44.000 0.00 0.00 35.28 4.30
968 1013 7.341769 TCTTCTTTCTATCTCTCTTTCAGGAGG 59.658 40.741 0.00 0.00 34.39 4.30
988 1033 3.126001 TGTTGCCATCGTCTTCTTCTT 57.874 42.857 0.00 0.00 0.00 2.52
1129 1174 3.708734 GGCGTGGACGAACCGTTG 61.709 66.667 2.73 0.00 41.37 4.10
1162 1207 1.360911 GATCGAGGGAGAGAACGGC 59.639 63.158 0.00 0.00 0.00 5.68
1165 1210 1.066908 CAGCTGATCGAGGGAGAGAAC 59.933 57.143 8.42 0.00 0.00 3.01
1166 1211 1.397672 CAGCTGATCGAGGGAGAGAA 58.602 55.000 8.42 0.00 0.00 2.87
1167 1212 1.106351 GCAGCTGATCGAGGGAGAGA 61.106 60.000 20.43 0.00 0.00 3.10
1202 1254 2.229062 TCAGTTCAGAGCTCCAAGTACG 59.771 50.000 10.93 2.77 0.00 3.67
1350 1402 1.892819 CGAGCTTCTGGGCCTTGAGA 61.893 60.000 4.53 0.00 0.00 3.27
1463 1521 3.282157 CCCAATCCATGCTCGGCG 61.282 66.667 0.00 0.00 0.00 6.46
1585 1643 2.664081 GGGGAGACAGTGGGAGCTG 61.664 68.421 0.00 0.00 41.92 4.24
1662 1720 4.148825 GCATCGACCGGGACAGCT 62.149 66.667 6.32 0.00 0.00 4.24
1912 1971 0.965866 ACGTGCTCCGGATTCTCTGA 60.966 55.000 3.57 0.00 42.24 3.27
1984 2043 8.565896 TCTACACATCAATTAGTTTTCTGCAT 57.434 30.769 0.00 0.00 0.00 3.96
2053 2112 1.689273 AGCCTAAGTGAGCGGATAAGG 59.311 52.381 0.00 0.00 0.00 2.69
2059 2118 2.361119 TGTACATAGCCTAAGTGAGCGG 59.639 50.000 0.00 0.00 0.00 5.52
2061 2120 4.142138 ACACTGTACATAGCCTAAGTGAGC 60.142 45.833 12.82 0.00 38.66 4.26
2144 2231 7.849804 TTTTTATCTTCTCTGCATGGTACTC 57.150 36.000 0.00 0.00 0.00 2.59
2211 2299 7.528996 AAGTTCAATTGAATGATTGTCAGGA 57.471 32.000 23.05 0.00 38.04 3.86
2354 2453 7.150640 TGCAATACTTAGAGCACATCTAGATG 58.849 38.462 27.63 27.63 41.57 2.90
2355 2454 7.295322 TGCAATACTTAGAGCACATCTAGAT 57.705 36.000 0.00 0.00 41.57 1.98
2356 2455 6.715347 TGCAATACTTAGAGCACATCTAGA 57.285 37.500 0.00 0.00 41.57 2.43
2364 2463 7.442364 GGATTTAGATGTGCAATACTTAGAGCA 59.558 37.037 0.00 0.00 34.10 4.26
2365 2464 7.659390 AGGATTTAGATGTGCAATACTTAGAGC 59.341 37.037 0.00 0.00 0.00 4.09
2370 2469 9.277783 GACATAGGATTTAGATGTGCAATACTT 57.722 33.333 0.00 0.00 33.99 2.24
2371 2470 8.432013 TGACATAGGATTTAGATGTGCAATACT 58.568 33.333 0.00 0.00 33.99 2.12
2372 2471 8.607441 TGACATAGGATTTAGATGTGCAATAC 57.393 34.615 0.00 0.00 33.99 1.89
2373 2472 9.797642 AATGACATAGGATTTAGATGTGCAATA 57.202 29.630 0.00 0.00 33.99 1.90
2374 2473 8.573885 CAATGACATAGGATTTAGATGTGCAAT 58.426 33.333 0.00 0.00 33.99 3.56
2375 2474 7.774625 TCAATGACATAGGATTTAGATGTGCAA 59.225 33.333 0.00 0.00 33.99 4.08
2376 2475 7.281841 TCAATGACATAGGATTTAGATGTGCA 58.718 34.615 0.00 0.00 33.99 4.57
2377 2476 7.734924 TCAATGACATAGGATTTAGATGTGC 57.265 36.000 0.00 0.00 33.99 4.57
2383 2482 9.241317 GCACAAAATCAATGACATAGGATTTAG 57.759 33.333 19.99 15.75 38.60 1.85
2384 2483 8.970020 AGCACAAAATCAATGACATAGGATTTA 58.030 29.630 19.99 0.00 38.60 1.40
2385 2484 7.844009 AGCACAAAATCAATGACATAGGATTT 58.156 30.769 16.48 16.48 40.59 2.17
2386 2485 7.414222 AGCACAAAATCAATGACATAGGATT 57.586 32.000 8.65 8.65 0.00 3.01
2387 2486 8.523915 TTAGCACAAAATCAATGACATAGGAT 57.476 30.769 0.00 0.00 0.00 3.24
2388 2487 7.828717 TCTTAGCACAAAATCAATGACATAGGA 59.171 33.333 0.00 0.00 0.00 2.94
2389 2488 7.988737 TCTTAGCACAAAATCAATGACATAGG 58.011 34.615 0.00 0.00 0.00 2.57
2392 2491 8.525316 TGAATCTTAGCACAAAATCAATGACAT 58.475 29.630 0.00 0.00 0.00 3.06
2393 2492 7.884257 TGAATCTTAGCACAAAATCAATGACA 58.116 30.769 0.00 0.00 0.00 3.58
2394 2493 8.804743 CATGAATCTTAGCACAAAATCAATGAC 58.195 33.333 0.00 0.00 0.00 3.06
2395 2494 7.490079 GCATGAATCTTAGCACAAAATCAATGA 59.510 33.333 0.00 0.00 0.00 2.57
2396 2495 7.276878 TGCATGAATCTTAGCACAAAATCAATG 59.723 33.333 0.00 0.00 31.05 2.82
2397 2496 7.324935 TGCATGAATCTTAGCACAAAATCAAT 58.675 30.769 0.00 0.00 31.05 2.57
2398 2497 6.689554 TGCATGAATCTTAGCACAAAATCAA 58.310 32.000 0.00 0.00 31.05 2.57
2399 2498 6.270156 TGCATGAATCTTAGCACAAAATCA 57.730 33.333 0.00 0.00 31.05 2.57
2400 2499 6.237755 GCTTGCATGAATCTTAGCACAAAATC 60.238 38.462 3.33 0.00 36.62 2.17
2401 2500 5.579511 GCTTGCATGAATCTTAGCACAAAAT 59.420 36.000 3.33 0.00 36.62 1.82
2402 2501 4.925054 GCTTGCATGAATCTTAGCACAAAA 59.075 37.500 3.33 0.00 36.62 2.44
2403 2502 4.022155 TGCTTGCATGAATCTTAGCACAAA 60.022 37.500 3.33 0.00 36.62 2.83
2404 2503 3.506844 TGCTTGCATGAATCTTAGCACAA 59.493 39.130 3.33 0.00 36.62 3.33
2405 2504 3.083293 TGCTTGCATGAATCTTAGCACA 58.917 40.909 3.33 0.00 36.62 4.57
2406 2505 3.770263 TGCTTGCATGAATCTTAGCAC 57.230 42.857 3.33 0.00 36.62 4.40
2407 2506 4.994907 AATGCTTGCATGAATCTTAGCA 57.005 36.364 8.98 7.81 42.14 3.49
2408 2507 6.657836 AAAAATGCTTGCATGAATCTTAGC 57.342 33.333 8.98 0.00 0.00 3.09
2446 2545 8.668353 GCACATCTAAGTGACTCAATCAATTTA 58.332 33.333 0.00 0.00 42.92 1.40
2447 2546 7.175467 TGCACATCTAAGTGACTCAATCAATTT 59.825 33.333 0.00 0.00 42.92 1.82
2448 2547 6.656270 TGCACATCTAAGTGACTCAATCAATT 59.344 34.615 0.00 0.00 46.89 2.32
2449 2548 6.175471 TGCACATCTAAGTGACTCAATCAAT 58.825 36.000 0.00 0.00 42.05 2.57
2450 2549 5.550290 TGCACATCTAAGTGACTCAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
2451 2550 5.151297 TGCACATCTAAGTGACTCAATCA 57.849 39.130 0.00 0.00 42.05 2.57
2452 2551 6.674694 ATTGCACATCTAAGTGACTCAATC 57.325 37.500 0.00 0.00 42.05 2.67
2453 2552 7.826252 AGTTATTGCACATCTAAGTGACTCAAT 59.174 33.333 0.00 0.00 42.05 2.57
2454 2553 7.161404 AGTTATTGCACATCTAAGTGACTCAA 58.839 34.615 0.00 0.00 42.05 3.02
2455 2554 6.701340 AGTTATTGCACATCTAAGTGACTCA 58.299 36.000 0.00 0.00 42.05 3.41
2456 2555 8.191446 TCTAGTTATTGCACATCTAAGTGACTC 58.809 37.037 0.00 0.00 42.05 3.36
2457 2556 8.067751 TCTAGTTATTGCACATCTAAGTGACT 57.932 34.615 0.00 0.00 42.05 3.41
2458 2557 7.043059 GCTCTAGTTATTGCACATCTAAGTGAC 60.043 40.741 0.00 0.00 42.05 3.67
2459 2558 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
2460 2559 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
2461 2560 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
2479 2578 8.753497 TTTAAGACTCATCTAGATGTGCTCTA 57.247 34.615 27.80 15.73 39.72 2.43
2480 2579 7.652524 TTTAAGACTCATCTAGATGTGCTCT 57.347 36.000 27.80 23.93 39.72 4.09
2481 2580 8.709386 TTTTTAAGACTCATCTAGATGTGCTC 57.291 34.615 27.80 22.59 39.72 4.26
2482 2581 9.107177 CATTTTTAAGACTCATCTAGATGTGCT 57.893 33.333 27.80 22.18 39.72 4.40
2483 2582 7.854916 GCATTTTTAAGACTCATCTAGATGTGC 59.145 37.037 27.80 21.32 39.72 4.57
2484 2583 8.341173 GGCATTTTTAAGACTCATCTAGATGTG 58.659 37.037 27.80 26.80 39.72 3.21
2485 2584 8.049117 TGGCATTTTTAAGACTCATCTAGATGT 58.951 33.333 27.80 13.30 39.72 3.06
2486 2585 8.442632 TGGCATTTTTAAGACTCATCTAGATG 57.557 34.615 24.32 24.32 40.09 2.90
2487 2586 9.638176 AATGGCATTTTTAAGACTCATCTAGAT 57.362 29.630 6.96 0.00 33.57 1.98
2488 2587 9.466497 AAATGGCATTTTTAAGACTCATCTAGA 57.534 29.630 19.39 0.00 33.57 2.43
2504 2603 9.760077 GATCTCTTGATATGAAAAATGGCATTT 57.240 29.630 19.39 19.39 32.19 2.32
2505 2604 8.080417 CGATCTCTTGATATGAAAAATGGCATT 58.920 33.333 6.96 6.96 32.19 3.56
2506 2605 7.230108 ACGATCTCTTGATATGAAAAATGGCAT 59.770 33.333 0.00 0.00 32.19 4.40
2507 2606 6.543465 ACGATCTCTTGATATGAAAAATGGCA 59.457 34.615 0.00 0.00 32.19 4.92
2508 2607 6.963796 ACGATCTCTTGATATGAAAAATGGC 58.036 36.000 0.00 0.00 32.19 4.40
2509 2608 8.375608 AGACGATCTCTTGATATGAAAAATGG 57.624 34.615 0.00 0.00 32.19 3.16
2530 2629 2.731976 GGTGTTGCTTAGTGAAGAGACG 59.268 50.000 0.00 0.00 34.25 4.18
2548 2647 7.267857 AGTTGGAAGAGAAAGAAAAATTGGTG 58.732 34.615 0.00 0.00 0.00 4.17
2559 2658 7.540055 GCATAATGTTTGAGTTGGAAGAGAAAG 59.460 37.037 0.00 0.00 0.00 2.62
2562 2661 6.003326 TGCATAATGTTTGAGTTGGAAGAGA 58.997 36.000 0.00 0.00 0.00 3.10
2563 2662 6.258230 TGCATAATGTTTGAGTTGGAAGAG 57.742 37.500 0.00 0.00 0.00 2.85
2564 2663 6.265196 AGTTGCATAATGTTTGAGTTGGAAGA 59.735 34.615 0.00 0.00 0.00 2.87
2565 2664 6.364165 CAGTTGCATAATGTTTGAGTTGGAAG 59.636 38.462 0.00 0.00 0.00 3.46
2566 2665 6.183360 ACAGTTGCATAATGTTTGAGTTGGAA 60.183 34.615 0.00 0.00 0.00 3.53
2568 2667 5.531634 ACAGTTGCATAATGTTTGAGTTGG 58.468 37.500 0.00 0.00 0.00 3.77
2570 2669 6.417635 CGAAACAGTTGCATAATGTTTGAGTT 59.582 34.615 22.63 7.29 44.76 3.01
2589 2689 2.867975 GGACGAAAAAGGAGACGAAACA 59.132 45.455 0.00 0.00 0.00 2.83
2617 2717 0.107165 GGTTTGCCCTAGCCACCTAG 60.107 60.000 0.00 0.00 38.02 3.02
2618 2718 0.549169 AGGTTTGCCCTAGCCACCTA 60.549 55.000 4.62 0.00 45.55 3.08
2619 2719 1.852626 AGGTTTGCCCTAGCCACCT 60.853 57.895 1.20 1.20 43.87 4.00
2620 2720 0.965866 GAAGGTTTGCCCTAGCCACC 60.966 60.000 0.00 0.00 45.47 4.61
2621 2721 0.965866 GGAAGGTTTGCCCTAGCCAC 60.966 60.000 0.00 0.00 45.47 5.01
2622 2722 1.382629 GGAAGGTTTGCCCTAGCCA 59.617 57.895 0.00 0.00 45.47 4.75
2623 2723 1.379977 GGGAAGGTTTGCCCTAGCC 60.380 63.158 0.00 0.00 45.47 3.93
2624 2724 4.338815 GGGAAGGTTTGCCCTAGC 57.661 61.111 0.00 0.00 45.47 3.42
2641 2741 1.221840 CACCGATGAAGTCTGGGGG 59.778 63.158 0.00 0.00 0.00 5.40
2642 2742 0.176680 CTCACCGATGAAGTCTGGGG 59.823 60.000 0.00 0.00 33.30 4.96
2643 2743 0.898320 ACTCACCGATGAAGTCTGGG 59.102 55.000 0.00 0.00 33.30 4.45
2644 2744 1.134965 GGACTCACCGATGAAGTCTGG 60.135 57.143 8.62 0.00 35.26 3.86
2645 2745 2.285827 GGACTCACCGATGAAGTCTG 57.714 55.000 8.62 0.00 35.26 3.51
2657 2757 1.404315 GGAGGTGAATCACGGACTCAC 60.404 57.143 16.15 6.87 37.96 3.51
2658 2758 0.895530 GGAGGTGAATCACGGACTCA 59.104 55.000 16.15 0.00 34.83 3.41
2659 2759 0.175989 GGGAGGTGAATCACGGACTC 59.824 60.000 7.35 8.24 34.83 3.36
2660 2760 1.265454 GGGGAGGTGAATCACGGACT 61.265 60.000 7.35 0.00 34.83 3.85
2661 2761 1.221021 GGGGAGGTGAATCACGGAC 59.779 63.158 7.35 1.37 34.83 4.79
2662 2762 0.976073 GAGGGGAGGTGAATCACGGA 60.976 60.000 7.35 0.00 34.83 4.69
2663 2763 0.978146 AGAGGGGAGGTGAATCACGG 60.978 60.000 7.35 0.00 34.83 4.94
2664 2764 0.176680 CAGAGGGGAGGTGAATCACG 59.823 60.000 7.35 0.00 34.83 4.35
2665 2765 0.107459 GCAGAGGGGAGGTGAATCAC 60.107 60.000 4.51 4.51 0.00 3.06
2666 2766 0.252881 AGCAGAGGGGAGGTGAATCA 60.253 55.000 0.00 0.00 0.00 2.57
2667 2767 0.915364 AAGCAGAGGGGAGGTGAATC 59.085 55.000 0.00 0.00 0.00 2.52
2668 2768 0.622665 CAAGCAGAGGGGAGGTGAAT 59.377 55.000 0.00 0.00 0.00 2.57
2669 2769 2.069776 CAAGCAGAGGGGAGGTGAA 58.930 57.895 0.00 0.00 0.00 3.18
2670 2770 2.596851 GCAAGCAGAGGGGAGGTGA 61.597 63.158 0.00 0.00 0.00 4.02
2671 2771 2.045536 GCAAGCAGAGGGGAGGTG 60.046 66.667 0.00 0.00 0.00 4.00
2672 2772 2.204059 AGCAAGCAGAGGGGAGGT 60.204 61.111 0.00 0.00 0.00 3.85
2673 2773 2.271497 CAGCAAGCAGAGGGGAGG 59.729 66.667 0.00 0.00 0.00 4.30
2674 2774 2.438075 GCAGCAAGCAGAGGGGAG 60.438 66.667 0.00 0.00 44.79 4.30
2700 3062 1.915078 ATTCTCCTTCCCGCCACCAG 61.915 60.000 0.00 0.00 0.00 4.00
2706 3068 0.462759 CCTGACATTCTCCTTCCCGC 60.463 60.000 0.00 0.00 0.00 6.13
2711 3073 0.551131 AGGGCCCTGACATTCTCCTT 60.551 55.000 28.05 0.00 0.00 3.36
2715 3077 1.561542 CAGTTAGGGCCCTGACATTCT 59.438 52.381 39.57 22.18 35.36 2.40
2726 3088 3.371285 GTGTCGAATTCTTCAGTTAGGGC 59.629 47.826 3.52 0.00 0.00 5.19
2761 3123 2.399356 GGGCTGGTGCTTAACTCGC 61.399 63.158 0.00 0.00 39.59 5.03
2763 3125 0.034089 ATGGGGCTGGTGCTTAACTC 60.034 55.000 0.00 0.00 39.59 3.01
2773 3135 2.034124 CTTGAACCAATATGGGGCTGG 58.966 52.381 0.00 0.00 43.37 4.85
2774 3136 2.954318 CTCTTGAACCAATATGGGGCTG 59.046 50.000 0.00 0.00 43.37 4.85
2775 3137 2.852449 TCTCTTGAACCAATATGGGGCT 59.148 45.455 0.00 0.00 43.37 5.19
2776 3138 3.297134 TCTCTTGAACCAATATGGGGC 57.703 47.619 0.00 0.00 43.37 5.80
2784 3146 6.159299 TGCATTTGAATTCTCTTGAACCAA 57.841 33.333 7.05 0.00 34.71 3.67
2785 3147 5.787953 TGCATTTGAATTCTCTTGAACCA 57.212 34.783 7.05 0.00 34.71 3.67
2808 3170 3.493873 CCATCGGATGAAGATCTTGCAGA 60.494 47.826 19.30 8.55 0.00 4.26
2818 3180 0.533755 GTCCTGGCCATCGGATGAAG 60.534 60.000 19.30 12.53 0.00 3.02
2825 3187 1.448540 GTGAGTGTCCTGGCCATCG 60.449 63.158 5.51 0.00 0.00 3.84
2828 3190 0.685097 GTAAGTGAGTGTCCTGGCCA 59.315 55.000 4.71 4.71 0.00 5.36
2833 3195 1.272769 GAAGCGGTAAGTGAGTGTCCT 59.727 52.381 0.00 0.00 0.00 3.85
2854 3216 4.400961 ACAAGCTCCTCCTGGCGC 62.401 66.667 0.00 0.00 43.97 6.53
2856 3218 1.376553 GACACAAGCTCCTCCTGGC 60.377 63.158 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.