Multiple sequence alignment - TraesCS1D01G110600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G110600 | chr1D | 100.000 | 2857 | 0 | 0 | 1 | 2857 | 104542585 | 104545441 | 0.000000e+00 | 5276.0 |
1 | TraesCS1D01G110600 | chr1D | 96.081 | 791 | 28 | 3 | 1 | 790 | 375707677 | 375706889 | 0.000000e+00 | 1286.0 |
2 | TraesCS1D01G110600 | chr1D | 95.944 | 789 | 32 | 0 | 1 | 789 | 316167174 | 316167962 | 0.000000e+00 | 1280.0 |
3 | TraesCS1D01G110600 | chr1D | 91.429 | 105 | 9 | 0 | 2566 | 2670 | 447257617 | 447257721 | 8.250000e-31 | 145.0 |
4 | TraesCS1D01G110600 | chr1A | 93.720 | 1672 | 48 | 27 | 836 | 2458 | 107485846 | 107484183 | 0.000000e+00 | 2453.0 |
5 | TraesCS1D01G110600 | chr1A | 90.761 | 184 | 15 | 2 | 2675 | 2857 | 107484037 | 107483855 | 7.910000e-61 | 244.0 |
6 | TraesCS1D01G110600 | chr1A | 94.286 | 140 | 6 | 2 | 2441 | 2579 | 107484175 | 107484037 | 2.230000e-51 | 213.0 |
7 | TraesCS1D01G110600 | chr1B | 91.795 | 1682 | 73 | 33 | 790 | 2437 | 162006506 | 162004856 | 0.000000e+00 | 2281.0 |
8 | TraesCS1D01G110600 | chr1B | 93.836 | 146 | 8 | 1 | 2435 | 2579 | 162004618 | 162004473 | 4.790000e-53 | 219.0 |
9 | TraesCS1D01G110600 | chr1B | 86.911 | 191 | 16 | 3 | 2675 | 2857 | 162004473 | 162004284 | 3.730000e-49 | 206.0 |
10 | TraesCS1D01G110600 | chr1B | 91.589 | 107 | 8 | 1 | 2575 | 2680 | 553897833 | 553897727 | 2.290000e-31 | 147.0 |
11 | TraesCS1D01G110600 | chr2D | 96.324 | 789 | 29 | 0 | 1 | 789 | 323538830 | 323539618 | 0.000000e+00 | 1297.0 |
12 | TraesCS1D01G110600 | chr2D | 96.081 | 791 | 31 | 0 | 1 | 791 | 450505899 | 450506689 | 0.000000e+00 | 1290.0 |
13 | TraesCS1D01G110600 | chr2D | 95.833 | 792 | 27 | 4 | 1 | 790 | 444401475 | 444400688 | 0.000000e+00 | 1275.0 |
14 | TraesCS1D01G110600 | chr7D | 95.990 | 798 | 30 | 2 | 1 | 796 | 311303783 | 311304580 | 0.000000e+00 | 1295.0 |
15 | TraesCS1D01G110600 | chr7D | 82.482 | 137 | 22 | 2 | 1090 | 1225 | 446920018 | 446919883 | 5.000000e-23 | 119.0 |
16 | TraesCS1D01G110600 | chr5D | 96.071 | 789 | 31 | 0 | 1 | 789 | 337191667 | 337190879 | 0.000000e+00 | 1286.0 |
17 | TraesCS1D01G110600 | chr5D | 95.876 | 97 | 4 | 0 | 2574 | 2670 | 379575720 | 379575624 | 1.060000e-34 | 158.0 |
18 | TraesCS1D01G110600 | chr3D | 96.071 | 789 | 31 | 0 | 1 | 789 | 288272169 | 288272957 | 0.000000e+00 | 1286.0 |
19 | TraesCS1D01G110600 | chr3D | 85.135 | 74 | 9 | 2 | 1153 | 1225 | 600424409 | 600424337 | 1.100000e-09 | 75.0 |
20 | TraesCS1D01G110600 | chr4D | 95.949 | 790 | 30 | 2 | 1 | 789 | 164989105 | 164988317 | 0.000000e+00 | 1280.0 |
21 | TraesCS1D01G110600 | chr2A | 77.340 | 406 | 67 | 21 | 1315 | 1703 | 94157945 | 94158342 | 1.720000e-52 | 217.0 |
22 | TraesCS1D01G110600 | chr2A | 87.234 | 94 | 12 | 0 | 1393 | 1486 | 598642203 | 598642110 | 1.080000e-19 | 108.0 |
23 | TraesCS1D01G110600 | chr5A | 95.833 | 96 | 4 | 0 | 2575 | 2670 | 680655880 | 680655785 | 3.810000e-34 | 156.0 |
24 | TraesCS1D01G110600 | chr5A | 95.789 | 95 | 4 | 0 | 2576 | 2670 | 510559778 | 510559684 | 1.370000e-33 | 154.0 |
25 | TraesCS1D01G110600 | chr5A | 77.073 | 205 | 41 | 6 | 1307 | 1508 | 463765752 | 463765551 | 2.330000e-21 | 113.0 |
26 | TraesCS1D01G110600 | chr7B | 74.447 | 407 | 79 | 19 | 1314 | 1703 | 535614588 | 535614986 | 4.930000e-33 | 152.0 |
27 | TraesCS1D01G110600 | chr7B | 75.248 | 202 | 42 | 6 | 1312 | 1510 | 610737459 | 610737263 | 3.920000e-14 | 89.8 |
28 | TraesCS1D01G110600 | chr6D | 95.745 | 94 | 4 | 0 | 2576 | 2669 | 50771931 | 50772024 | 4.930000e-33 | 152.0 |
29 | TraesCS1D01G110600 | chr6D | 90.435 | 115 | 10 | 1 | 2572 | 2686 | 349035520 | 349035407 | 1.770000e-32 | 150.0 |
30 | TraesCS1D01G110600 | chr6B | 94.059 | 101 | 5 | 1 | 2571 | 2670 | 36774417 | 36774517 | 4.930000e-33 | 152.0 |
31 | TraesCS1D01G110600 | chr6B | 88.793 | 116 | 9 | 4 | 2565 | 2680 | 526103186 | 526103297 | 3.840000e-29 | 139.0 |
32 | TraesCS1D01G110600 | chr7A | 73.723 | 411 | 79 | 22 | 1312 | 1703 | 574754115 | 574754515 | 1.790000e-27 | 134.0 |
33 | TraesCS1D01G110600 | chr7A | 82.482 | 137 | 22 | 2 | 1090 | 1225 | 497776183 | 497776318 | 5.000000e-23 | 119.0 |
34 | TraesCS1D01G110600 | chr5B | 76.585 | 205 | 42 | 6 | 1307 | 1508 | 428963019 | 428962818 | 1.080000e-19 | 108.0 |
35 | TraesCS1D01G110600 | chrUn | 84.932 | 73 | 9 | 2 | 1153 | 1224 | 195649516 | 195649445 | 3.950000e-09 | 73.1 |
36 | TraesCS1D01G110600 | chrUn | 84.932 | 73 | 9 | 2 | 1153 | 1224 | 195664747 | 195664676 | 3.950000e-09 | 73.1 |
37 | TraesCS1D01G110600 | chrUn | 84.932 | 73 | 9 | 2 | 1153 | 1224 | 226785679 | 226785608 | 3.950000e-09 | 73.1 |
38 | TraesCS1D01G110600 | chrUn | 84.932 | 73 | 9 | 2 | 1153 | 1224 | 269606485 | 269606556 | 3.950000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G110600 | chr1D | 104542585 | 104545441 | 2856 | False | 5276 | 5276 | 100.000000 | 1 | 2857 | 1 | chr1D.!!$F1 | 2856 |
1 | TraesCS1D01G110600 | chr1D | 375706889 | 375707677 | 788 | True | 1286 | 1286 | 96.081000 | 1 | 790 | 1 | chr1D.!!$R1 | 789 |
2 | TraesCS1D01G110600 | chr1D | 316167174 | 316167962 | 788 | False | 1280 | 1280 | 95.944000 | 1 | 789 | 1 | chr1D.!!$F2 | 788 |
3 | TraesCS1D01G110600 | chr1A | 107483855 | 107485846 | 1991 | True | 970 | 2453 | 92.922333 | 836 | 2857 | 3 | chr1A.!!$R1 | 2021 |
4 | TraesCS1D01G110600 | chr1B | 162004284 | 162006506 | 2222 | True | 902 | 2281 | 90.847333 | 790 | 2857 | 3 | chr1B.!!$R2 | 2067 |
5 | TraesCS1D01G110600 | chr2D | 323538830 | 323539618 | 788 | False | 1297 | 1297 | 96.324000 | 1 | 789 | 1 | chr2D.!!$F1 | 788 |
6 | TraesCS1D01G110600 | chr2D | 450505899 | 450506689 | 790 | False | 1290 | 1290 | 96.081000 | 1 | 791 | 1 | chr2D.!!$F2 | 790 |
7 | TraesCS1D01G110600 | chr2D | 444400688 | 444401475 | 787 | True | 1275 | 1275 | 95.833000 | 1 | 790 | 1 | chr2D.!!$R1 | 789 |
8 | TraesCS1D01G110600 | chr7D | 311303783 | 311304580 | 797 | False | 1295 | 1295 | 95.990000 | 1 | 796 | 1 | chr7D.!!$F1 | 795 |
9 | TraesCS1D01G110600 | chr5D | 337190879 | 337191667 | 788 | True | 1286 | 1286 | 96.071000 | 1 | 789 | 1 | chr5D.!!$R1 | 788 |
10 | TraesCS1D01G110600 | chr3D | 288272169 | 288272957 | 788 | False | 1286 | 1286 | 96.071000 | 1 | 789 | 1 | chr3D.!!$F1 | 788 |
11 | TraesCS1D01G110600 | chr4D | 164988317 | 164989105 | 788 | True | 1280 | 1280 | 95.949000 | 1 | 789 | 1 | chr4D.!!$R1 | 788 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
223 | 224 | 0.035343 | GCCCTTCGAAGCTACCCTTT | 60.035 | 55.0 | 19.99 | 0.0 | 32.78 | 3.11 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2194 | 2249 | 0.24912 | AAGATGATGGTGAACGGCGA | 59.751 | 50.0 | 16.62 | 0.0 | 0.0 | 5.54 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
217 | 218 | 0.537188 | CCTTGAGCCCTTCGAAGCTA | 59.463 | 55.000 | 19.99 | 0.95 | 40.11 | 3.32 |
223 | 224 | 0.035343 | GCCCTTCGAAGCTACCCTTT | 60.035 | 55.000 | 19.99 | 0.00 | 32.78 | 3.11 |
409 | 411 | 3.244665 | CCCCTTACGGTGAAGGTAAAAGT | 60.245 | 47.826 | 10.90 | 0.00 | 44.02 | 2.66 |
442 | 444 | 5.424573 | AGTTGAGGTGGTATTACTTAGGGTC | 59.575 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
466 | 469 | 1.568504 | TGACCAGGGAGCTTAATCGT | 58.431 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
496 | 499 | 2.223479 | GCTCTCGATCTGTTGTCTCTCC | 60.223 | 54.545 | 0.00 | 0.00 | 0.00 | 3.71 |
497 | 500 | 3.013219 | CTCTCGATCTGTTGTCTCTCCA | 58.987 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
498 | 501 | 3.625853 | TCTCGATCTGTTGTCTCTCCAT | 58.374 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
541 | 544 | 8.010697 | TCATCCCTTTATATAGAGAGGTTGACA | 58.989 | 37.037 | 3.48 | 0.00 | 0.00 | 3.58 |
652 | 658 | 1.068585 | GGCGGGTTATCACTACGGG | 59.931 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
708 | 714 | 0.690192 | TCCGCCATCCTCAAACTTGA | 59.310 | 50.000 | 0.00 | 0.00 | 35.57 | 3.02 |
735 | 741 | 3.248602 | GGGCTTCACGTGATGATCATTAC | 59.751 | 47.826 | 29.54 | 18.24 | 37.11 | 1.89 |
736 | 742 | 3.871006 | GGCTTCACGTGATGATCATTACA | 59.129 | 43.478 | 29.54 | 11.39 | 37.11 | 2.41 |
801 | 807 | 4.842531 | TCCTCAACAGAAGGAATATGCA | 57.157 | 40.909 | 0.00 | 0.00 | 39.99 | 3.96 |
806 | 812 | 6.238676 | CCTCAACAGAAGGAATATGCAGATTG | 60.239 | 42.308 | 12.07 | 0.00 | 35.83 | 2.67 |
807 | 813 | 6.417258 | TCAACAGAAGGAATATGCAGATTGA | 58.583 | 36.000 | 12.07 | 0.00 | 0.00 | 2.57 |
834 | 840 | 7.039714 | GGATAATGGATCAAATTAACTGGTCCC | 60.040 | 40.741 | 13.65 | 1.62 | 42.57 | 4.46 |
880 | 886 | 1.091537 | GCCTGCGGTTAGTAATGCAA | 58.908 | 50.000 | 12.18 | 0.64 | 36.82 | 4.08 |
921 | 927 | 3.589951 | AGTTCTACCCAGCGTCCTATA | 57.410 | 47.619 | 0.00 | 0.00 | 0.00 | 1.31 |
932 | 938 | 2.997986 | AGCGTCCTATAAAAACCACACG | 59.002 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
941 | 947 | 1.595466 | AAAACCACACGCCACGAATA | 58.405 | 45.000 | 0.00 | 0.00 | 0.00 | 1.75 |
942 | 948 | 1.153353 | AAACCACACGCCACGAATAG | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
943 | 949 | 0.672401 | AACCACACGCCACGAATAGG | 60.672 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
944 | 950 | 1.216977 | CCACACGCCACGAATAGGA | 59.783 | 57.895 | 0.00 | 0.00 | 0.00 | 2.94 |
945 | 951 | 0.806102 | CCACACGCCACGAATAGGAG | 60.806 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
946 | 952 | 0.172578 | CACACGCCACGAATAGGAGA | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
947 | 953 | 0.456221 | ACACGCCACGAATAGGAGAG | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
948 | 954 | 0.456221 | CACGCCACGAATAGGAGAGT | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
949 | 955 | 1.674441 | CACGCCACGAATAGGAGAGTA | 59.326 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
950 | 956 | 2.293677 | CACGCCACGAATAGGAGAGTAT | 59.706 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
951 | 957 | 2.957006 | ACGCCACGAATAGGAGAGTATT | 59.043 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
952 | 958 | 4.023450 | CACGCCACGAATAGGAGAGTATTA | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
953 | 959 | 4.765856 | ACGCCACGAATAGGAGAGTATTAT | 59.234 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
954 | 960 | 5.106237 | ACGCCACGAATAGGAGAGTATTATC | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
955 | 961 | 5.652518 | GCCACGAATAGGAGAGTATTATCC | 58.347 | 45.833 | 0.00 | 0.00 | 35.71 | 2.59 |
956 | 962 | 5.185249 | GCCACGAATAGGAGAGTATTATCCA | 59.815 | 44.000 | 1.42 | 0.00 | 38.12 | 3.41 |
957 | 963 | 6.622549 | CCACGAATAGGAGAGTATTATCCAC | 58.377 | 44.000 | 1.42 | 0.00 | 38.12 | 4.02 |
958 | 964 | 6.315551 | CACGAATAGGAGAGTATTATCCACG | 58.684 | 44.000 | 1.42 | 4.48 | 38.12 | 4.94 |
959 | 965 | 6.148976 | CACGAATAGGAGAGTATTATCCACGA | 59.851 | 42.308 | 1.42 | 0.00 | 38.12 | 4.35 |
960 | 966 | 6.713903 | ACGAATAGGAGAGTATTATCCACGAA | 59.286 | 38.462 | 1.42 | 0.00 | 38.12 | 3.85 |
961 | 967 | 7.094720 | ACGAATAGGAGAGTATTATCCACGAAG | 60.095 | 40.741 | 1.42 | 0.00 | 38.12 | 3.79 |
962 | 968 | 4.857509 | AGGAGAGTATTATCCACGAAGC | 57.142 | 45.455 | 1.42 | 0.00 | 38.12 | 3.86 |
963 | 969 | 4.475345 | AGGAGAGTATTATCCACGAAGCT | 58.525 | 43.478 | 1.42 | 0.00 | 38.12 | 3.74 |
964 | 970 | 4.279671 | AGGAGAGTATTATCCACGAAGCTG | 59.720 | 45.833 | 1.42 | 0.00 | 38.12 | 4.24 |
965 | 971 | 3.983741 | AGAGTATTATCCACGAAGCTGC | 58.016 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
966 | 972 | 3.384789 | AGAGTATTATCCACGAAGCTGCA | 59.615 | 43.478 | 1.02 | 0.00 | 0.00 | 4.41 |
967 | 973 | 4.119862 | GAGTATTATCCACGAAGCTGCAA | 58.880 | 43.478 | 1.02 | 0.00 | 0.00 | 4.08 |
1106 | 1146 | 0.731855 | GACGTGGGCTTCTACGACAC | 60.732 | 60.000 | 9.09 | 0.00 | 42.54 | 3.67 |
1237 | 1277 | 1.065418 | TCAAGGTAAGCCAAGCTAGCC | 60.065 | 52.381 | 12.13 | 0.00 | 38.25 | 3.93 |
1239 | 1279 | 0.543749 | AGGTAAGCCAAGCTAGCCAG | 59.456 | 55.000 | 12.13 | 3.84 | 38.25 | 4.85 |
1305 | 1349 | 1.800586 | CATATACTCACATGCACGGGC | 59.199 | 52.381 | 0.34 | 0.34 | 41.68 | 6.13 |
1568 | 1612 | 3.041940 | GCCGTGTGTCCACCGAAG | 61.042 | 66.667 | 9.03 | 0.00 | 38.41 | 3.79 |
1749 | 1794 | 1.969200 | TTCCCAACACAACCGACGGA | 61.969 | 55.000 | 23.38 | 0.00 | 0.00 | 4.69 |
1810 | 1857 | 2.293122 | TGGAATTTTGAGCAGTCAACGG | 59.707 | 45.455 | 0.00 | 0.00 | 42.60 | 4.44 |
1902 | 1949 | 3.499737 | CATCTGCCCGCCGAACAC | 61.500 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
2114 | 2169 | 0.685131 | CCATGCTCAAGATGGGGCAA | 60.685 | 55.000 | 0.00 | 0.00 | 37.33 | 4.52 |
2133 | 2188 | 2.856039 | AATCGAGGTGCTCTCCGGGA | 62.856 | 60.000 | 0.00 | 0.00 | 39.30 | 5.14 |
2194 | 2249 | 1.006571 | CCAACGTCACTAGTGCCGT | 60.007 | 57.895 | 24.92 | 24.92 | 0.00 | 5.68 |
2220 | 2275 | 1.123077 | TCACCATCATCTTCTCCCCG | 58.877 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
2262 | 2332 | 2.271800 | CAAGCTGATTAGTCGGTGGTC | 58.728 | 52.381 | 0.00 | 0.00 | 33.06 | 4.02 |
2263 | 2333 | 1.557099 | AGCTGATTAGTCGGTGGTCA | 58.443 | 50.000 | 0.00 | 0.00 | 33.06 | 4.02 |
2329 | 2412 | 8.562052 | TGCTCTAGTGTGATGCAATAAATTATG | 58.438 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
2385 | 2469 | 2.223144 | CGAGCGTTTGAAATGAACCAGA | 59.777 | 45.455 | 0.48 | 0.00 | 0.00 | 3.86 |
2407 | 2495 | 7.201767 | CCAGATCCAAAATGTTCCTATGAGAAC | 60.202 | 40.741 | 3.41 | 3.41 | 45.24 | 3.01 |
2548 | 2879 | 6.152154 | ACCCTTACTTTTGTTTAATCCATCCG | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
2579 | 2910 | 9.350951 | ACCCAATTTGCCTACTAATTAATACTC | 57.649 | 33.333 | 0.00 | 0.00 | 31.33 | 2.59 |
2580 | 2911 | 8.793592 | CCCAATTTGCCTACTAATTAATACTCC | 58.206 | 37.037 | 0.00 | 0.00 | 31.33 | 3.85 |
2581 | 2912 | 8.793592 | CCAATTTGCCTACTAATTAATACTCCC | 58.206 | 37.037 | 0.00 | 0.00 | 31.33 | 4.30 |
2582 | 2913 | 9.574516 | CAATTTGCCTACTAATTAATACTCCCT | 57.425 | 33.333 | 0.00 | 0.00 | 31.33 | 4.20 |
2583 | 2914 | 9.794719 | AATTTGCCTACTAATTAATACTCCCTC | 57.205 | 33.333 | 0.00 | 0.00 | 30.84 | 4.30 |
2584 | 2915 | 6.930068 | TGCCTACTAATTAATACTCCCTCC | 57.070 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2585 | 2916 | 6.387127 | TGCCTACTAATTAATACTCCCTCCA | 58.613 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2586 | 2917 | 7.023120 | TGCCTACTAATTAATACTCCCTCCAT | 58.977 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2587 | 2918 | 7.516209 | TGCCTACTAATTAATACTCCCTCCATT | 59.484 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2588 | 2919 | 8.041919 | GCCTACTAATTAATACTCCCTCCATTC | 58.958 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
2589 | 2920 | 9.327731 | CCTACTAATTAATACTCCCTCCATTCT | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
2600 | 2931 | 7.937700 | ACTCCCTCCATTCTAAAATAGATGA | 57.062 | 36.000 | 0.00 | 0.00 | 34.22 | 2.92 |
2601 | 2932 | 7.740805 | ACTCCCTCCATTCTAAAATAGATGAC | 58.259 | 38.462 | 0.00 | 0.00 | 34.22 | 3.06 |
2602 | 2933 | 7.079451 | TCCCTCCATTCTAAAATAGATGACC | 57.921 | 40.000 | 0.00 | 0.00 | 34.22 | 4.02 |
2603 | 2934 | 6.044404 | TCCCTCCATTCTAAAATAGATGACCC | 59.956 | 42.308 | 0.00 | 0.00 | 34.22 | 4.46 |
2604 | 2935 | 6.183361 | CCCTCCATTCTAAAATAGATGACCCA | 60.183 | 42.308 | 0.00 | 0.00 | 34.22 | 4.51 |
2605 | 2936 | 7.290061 | CCTCCATTCTAAAATAGATGACCCAA | 58.710 | 38.462 | 0.00 | 0.00 | 34.22 | 4.12 |
2606 | 2937 | 7.229506 | CCTCCATTCTAAAATAGATGACCCAAC | 59.770 | 40.741 | 0.00 | 0.00 | 34.22 | 3.77 |
2607 | 2938 | 7.872138 | TCCATTCTAAAATAGATGACCCAACT | 58.128 | 34.615 | 0.00 | 0.00 | 34.22 | 3.16 |
2608 | 2939 | 8.336235 | TCCATTCTAAAATAGATGACCCAACTT | 58.664 | 33.333 | 0.00 | 0.00 | 34.22 | 2.66 |
2609 | 2940 | 8.971073 | CCATTCTAAAATAGATGACCCAACTTT | 58.029 | 33.333 | 0.00 | 0.00 | 34.22 | 2.66 |
2663 | 2994 | 7.133891 | AGTTGAGTCATCTATTTTGAAACGG | 57.866 | 36.000 | 1.70 | 0.00 | 0.00 | 4.44 |
2664 | 2995 | 6.934645 | AGTTGAGTCATCTATTTTGAAACGGA | 59.065 | 34.615 | 1.70 | 0.00 | 0.00 | 4.69 |
2665 | 2996 | 6.968131 | TGAGTCATCTATTTTGAAACGGAG | 57.032 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
2666 | 2997 | 5.874810 | TGAGTCATCTATTTTGAAACGGAGG | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2667 | 2998 | 5.186198 | AGTCATCTATTTTGAAACGGAGGG | 58.814 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2668 | 2999 | 5.045869 | AGTCATCTATTTTGAAACGGAGGGA | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2669 | 3000 | 5.294552 | GTCATCTATTTTGAAACGGAGGGAG | 59.705 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2670 | 3001 | 4.216411 | TCTATTTTGAAACGGAGGGAGG | 57.784 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
2671 | 3002 | 2.215942 | ATTTTGAAACGGAGGGAGGG | 57.784 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2672 | 3003 | 1.142060 | TTTTGAAACGGAGGGAGGGA | 58.858 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2673 | 3004 | 0.690762 | TTTGAAACGGAGGGAGGGAG | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2674 | 3005 | 0.473117 | TTGAAACGGAGGGAGGGAGT | 60.473 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2679 | 3010 | 1.212934 | ACGGAGGGAGGGAGTACTCA | 61.213 | 60.000 | 23.91 | 0.00 | 39.27 | 3.41 |
2680 | 3011 | 0.466555 | CGGAGGGAGGGAGTACTCAG | 60.467 | 65.000 | 23.91 | 0.68 | 39.27 | 3.35 |
2684 | 3015 | 0.827368 | GGGAGGGAGTACTCAGCAAG | 59.173 | 60.000 | 23.91 | 0.00 | 39.27 | 4.01 |
2700 | 3031 | 6.493458 | ACTCAGCAAGGTACCACATTTATTTT | 59.507 | 34.615 | 15.94 | 0.00 | 0.00 | 1.82 |
2709 | 3040 | 8.603304 | AGGTACCACATTTATTTTGTCTAGTCT | 58.397 | 33.333 | 15.94 | 0.00 | 0.00 | 3.24 |
2760 | 3092 | 9.653516 | TGAACCCATCAACCATATATGTTAAAT | 57.346 | 29.630 | 11.73 | 0.00 | 34.30 | 1.40 |
2791 | 3123 | 3.857052 | TCGTCCTGAATGTTATGGTGAC | 58.143 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
217 | 218 | 5.077564 | GGTGGATTTGAGTTCTTAAAGGGT | 58.922 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
223 | 224 | 3.071479 | GCACGGTGGATTTGAGTTCTTA | 58.929 | 45.455 | 10.60 | 0.00 | 0.00 | 2.10 |
312 | 314 | 2.107750 | CTGCGATGGCTCCACGAT | 59.892 | 61.111 | 0.15 | 0.00 | 40.82 | 3.73 |
347 | 349 | 2.433436 | GTGTTCCTTGTCCCGCTTAAT | 58.567 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
409 | 411 | 1.254026 | CCACCTCAACTGGACGTAGA | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
442 | 444 | 1.403814 | TAAGCTCCCTGGTCATCGAG | 58.596 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
466 | 469 | 1.342496 | CAGATCGAGAGCCAGGCATAA | 59.658 | 52.381 | 15.80 | 0.00 | 0.00 | 1.90 |
602 | 606 | 6.293955 | GCAAGACTTGTAATGTAAGGCAAGAA | 60.294 | 38.462 | 16.39 | 0.00 | 40.30 | 2.52 |
708 | 714 | 1.831106 | TCATCACGTGAAGCCCAGTAT | 59.169 | 47.619 | 24.13 | 0.00 | 32.78 | 2.12 |
735 | 741 | 3.963687 | GAGGGGCCGGGTTACGTTG | 62.964 | 68.421 | 2.18 | 0.00 | 42.24 | 4.10 |
736 | 742 | 3.709633 | GAGGGGCCGGGTTACGTT | 61.710 | 66.667 | 2.18 | 0.00 | 42.24 | 3.99 |
806 | 812 | 8.697507 | ACCAGTTAATTTGATCCATTATCCTC | 57.302 | 34.615 | 0.00 | 0.00 | 33.22 | 3.71 |
807 | 813 | 7.725844 | GGACCAGTTAATTTGATCCATTATCCT | 59.274 | 37.037 | 0.00 | 0.00 | 33.22 | 3.24 |
863 | 869 | 3.000041 | TCACTTGCATTACTAACCGCAG | 59.000 | 45.455 | 0.00 | 0.00 | 35.47 | 5.18 |
880 | 886 | 1.425066 | TGGAAGGGCATTTCTGTCACT | 59.575 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
921 | 927 | 0.741915 | ATTCGTGGCGTGTGGTTTTT | 59.258 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
932 | 938 | 5.185249 | TGGATAATACTCTCCTATTCGTGGC | 59.815 | 44.000 | 0.00 | 0.00 | 32.47 | 5.01 |
941 | 947 | 4.279671 | CAGCTTCGTGGATAATACTCTCCT | 59.720 | 45.833 | 0.00 | 0.00 | 32.47 | 3.69 |
942 | 948 | 4.551388 | CAGCTTCGTGGATAATACTCTCC | 58.449 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
943 | 949 | 3.984633 | GCAGCTTCGTGGATAATACTCTC | 59.015 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
944 | 950 | 3.384789 | TGCAGCTTCGTGGATAATACTCT | 59.615 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
945 | 951 | 3.717707 | TGCAGCTTCGTGGATAATACTC | 58.282 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
946 | 952 | 3.819564 | TGCAGCTTCGTGGATAATACT | 57.180 | 42.857 | 0.00 | 0.00 | 0.00 | 2.12 |
947 | 953 | 4.786609 | GCTTTGCAGCTTCGTGGATAATAC | 60.787 | 45.833 | 0.00 | 0.00 | 43.51 | 1.89 |
948 | 954 | 3.312421 | GCTTTGCAGCTTCGTGGATAATA | 59.688 | 43.478 | 0.00 | 0.00 | 43.51 | 0.98 |
949 | 955 | 2.098117 | GCTTTGCAGCTTCGTGGATAAT | 59.902 | 45.455 | 0.00 | 0.00 | 43.51 | 1.28 |
950 | 956 | 1.468520 | GCTTTGCAGCTTCGTGGATAA | 59.531 | 47.619 | 0.00 | 0.00 | 43.51 | 1.75 |
951 | 957 | 1.086696 | GCTTTGCAGCTTCGTGGATA | 58.913 | 50.000 | 0.00 | 0.00 | 43.51 | 2.59 |
952 | 958 | 1.878775 | GCTTTGCAGCTTCGTGGAT | 59.121 | 52.632 | 0.00 | 0.00 | 43.51 | 3.41 |
953 | 959 | 3.343972 | GCTTTGCAGCTTCGTGGA | 58.656 | 55.556 | 0.00 | 0.00 | 43.51 | 4.02 |
962 | 968 | 2.026445 | TGCGCTGTTGCTTTGCAG | 59.974 | 55.556 | 9.73 | 0.00 | 40.61 | 4.41 |
963 | 969 | 2.278726 | GTGCGCTGTTGCTTTGCA | 60.279 | 55.556 | 9.73 | 0.00 | 36.47 | 4.08 |
964 | 970 | 1.611592 | GATGTGCGCTGTTGCTTTGC | 61.612 | 55.000 | 9.73 | 0.00 | 36.97 | 3.68 |
965 | 971 | 0.318022 | TGATGTGCGCTGTTGCTTTG | 60.318 | 50.000 | 9.73 | 0.00 | 36.97 | 2.77 |
966 | 972 | 0.039798 | CTGATGTGCGCTGTTGCTTT | 60.040 | 50.000 | 9.73 | 0.00 | 36.97 | 3.51 |
967 | 973 | 0.886043 | TCTGATGTGCGCTGTTGCTT | 60.886 | 50.000 | 9.73 | 0.00 | 36.97 | 3.91 |
1305 | 1349 | 2.259204 | CGCACCCCTGCAACAATG | 59.741 | 61.111 | 0.00 | 0.00 | 44.50 | 2.82 |
1749 | 1794 | 9.013229 | TGTTGAAGAATTATGCAAGTCATTACT | 57.987 | 29.630 | 0.00 | 0.00 | 36.63 | 2.24 |
1756 | 1801 | 6.804677 | TGTGTTGTTGAAGAATTATGCAAGT | 58.195 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1757 | 1802 | 7.595875 | TGATGTGTTGTTGAAGAATTATGCAAG | 59.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
1758 | 1803 | 7.432059 | TGATGTGTTGTTGAAGAATTATGCAA | 58.568 | 30.769 | 0.00 | 0.00 | 0.00 | 4.08 |
1759 | 1804 | 6.979465 | TGATGTGTTGTTGAAGAATTATGCA | 58.021 | 32.000 | 0.00 | 0.00 | 0.00 | 3.96 |
1760 | 1805 | 7.872163 | TTGATGTGTTGTTGAAGAATTATGC | 57.128 | 32.000 | 0.00 | 0.00 | 0.00 | 3.14 |
1801 | 1848 | 6.737254 | ACAAATAATTAGGACCGTTGACTG | 57.263 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
2114 | 2169 | 2.427245 | CCCGGAGAGCACCTCGATT | 61.427 | 63.158 | 0.73 | 0.00 | 42.89 | 3.34 |
2194 | 2249 | 0.249120 | AAGATGATGGTGAACGGCGA | 59.751 | 50.000 | 16.62 | 0.00 | 0.00 | 5.54 |
2220 | 2275 | 1.609783 | CCACCTGGTTGGATCCTCC | 59.390 | 63.158 | 14.23 | 15.44 | 39.24 | 4.30 |
2255 | 2325 | 4.038042 | ACACATATCTCTACATGACCACCG | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 4.94 |
2262 | 2332 | 5.519722 | TGCACGTACACATATCTCTACATG | 58.480 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
2263 | 2333 | 5.299531 | ACTGCACGTACACATATCTCTACAT | 59.700 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2329 | 2412 | 4.034048 | ACAGACGTTCAGACAAAACATCAC | 59.966 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2385 | 2469 | 9.401058 | CTTAGTTCTCATAGGAACATTTTGGAT | 57.599 | 33.333 | 9.50 | 0.00 | 45.52 | 3.41 |
2407 | 2495 | 6.910536 | ACTTGAGAAACCGAATATGCTTAG | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 2.18 |
2468 | 2799 | 3.071479 | GGCGTCTTGGTCAAATACAGAA | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2474 | 2805 | 1.169661 | TTGCGGCGTCTTGGTCAAAT | 61.170 | 50.000 | 9.37 | 0.00 | 0.00 | 2.32 |
2548 | 2879 | 6.715347 | ATTAGTAGGCAAATTGGGTCAATC | 57.285 | 37.500 | 0.00 | 0.00 | 32.43 | 2.67 |
2579 | 2910 | 6.183361 | TGGGTCATCTATTTTAGAATGGAGGG | 60.183 | 42.308 | 4.57 | 0.00 | 36.39 | 4.30 |
2580 | 2911 | 6.841601 | TGGGTCATCTATTTTAGAATGGAGG | 58.158 | 40.000 | 0.00 | 0.00 | 36.39 | 4.30 |
2581 | 2912 | 7.995488 | AGTTGGGTCATCTATTTTAGAATGGAG | 59.005 | 37.037 | 0.00 | 0.00 | 36.39 | 3.86 |
2582 | 2913 | 7.872138 | AGTTGGGTCATCTATTTTAGAATGGA | 58.128 | 34.615 | 0.00 | 0.00 | 38.50 | 3.41 |
2583 | 2914 | 8.525290 | AAGTTGGGTCATCTATTTTAGAATGG | 57.475 | 34.615 | 0.00 | 0.00 | 38.50 | 3.16 |
2637 | 2968 | 8.076178 | CCGTTTCAAAATAGATGACTCAACTTT | 58.924 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2638 | 2969 | 7.444183 | TCCGTTTCAAAATAGATGACTCAACTT | 59.556 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2639 | 2970 | 6.934645 | TCCGTTTCAAAATAGATGACTCAACT | 59.065 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2640 | 2971 | 7.129109 | TCCGTTTCAAAATAGATGACTCAAC | 57.871 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2641 | 2972 | 6.371548 | CCTCCGTTTCAAAATAGATGACTCAA | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2642 | 2973 | 5.874810 | CCTCCGTTTCAAAATAGATGACTCA | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2643 | 2974 | 5.294552 | CCCTCCGTTTCAAAATAGATGACTC | 59.705 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2644 | 2975 | 5.045869 | TCCCTCCGTTTCAAAATAGATGACT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2645 | 2976 | 5.183228 | TCCCTCCGTTTCAAAATAGATGAC | 58.817 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2646 | 2977 | 5.428253 | CTCCCTCCGTTTCAAAATAGATGA | 58.572 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
2647 | 2978 | 4.576463 | CCTCCCTCCGTTTCAAAATAGATG | 59.424 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
2648 | 2979 | 4.385310 | CCCTCCCTCCGTTTCAAAATAGAT | 60.385 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
2649 | 2980 | 3.054655 | CCCTCCCTCCGTTTCAAAATAGA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
2650 | 2981 | 3.054655 | TCCCTCCCTCCGTTTCAAAATAG | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
2651 | 2982 | 2.914278 | TCCCTCCCTCCGTTTCAAAATA | 59.086 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2652 | 2983 | 1.708551 | TCCCTCCCTCCGTTTCAAAAT | 59.291 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
2653 | 2984 | 1.073284 | CTCCCTCCCTCCGTTTCAAAA | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
2654 | 2985 | 0.690762 | CTCCCTCCCTCCGTTTCAAA | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2655 | 2986 | 0.473117 | ACTCCCTCCCTCCGTTTCAA | 60.473 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2656 | 2987 | 0.410663 | TACTCCCTCCCTCCGTTTCA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2657 | 2988 | 0.822811 | GTACTCCCTCCCTCCGTTTC | 59.177 | 60.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2658 | 2989 | 0.412640 | AGTACTCCCTCCCTCCGTTT | 59.587 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
2659 | 2990 | 0.033306 | GAGTACTCCCTCCCTCCGTT | 60.033 | 60.000 | 12.13 | 0.00 | 0.00 | 4.44 |
2660 | 2991 | 1.212934 | TGAGTACTCCCTCCCTCCGT | 61.213 | 60.000 | 20.11 | 0.00 | 0.00 | 4.69 |
2661 | 2992 | 0.466555 | CTGAGTACTCCCTCCCTCCG | 60.467 | 65.000 | 20.11 | 0.00 | 0.00 | 4.63 |
2662 | 2993 | 0.757561 | GCTGAGTACTCCCTCCCTCC | 60.758 | 65.000 | 20.11 | 0.00 | 0.00 | 4.30 |
2663 | 2994 | 0.033011 | TGCTGAGTACTCCCTCCCTC | 60.033 | 60.000 | 20.11 | 2.49 | 0.00 | 4.30 |
2664 | 2995 | 0.413832 | TTGCTGAGTACTCCCTCCCT | 59.586 | 55.000 | 20.11 | 0.00 | 0.00 | 4.20 |
2665 | 2996 | 0.827368 | CTTGCTGAGTACTCCCTCCC | 59.173 | 60.000 | 20.11 | 4.69 | 0.00 | 4.30 |
2666 | 2997 | 0.827368 | CCTTGCTGAGTACTCCCTCC | 59.173 | 60.000 | 20.11 | 6.36 | 0.00 | 4.30 |
2667 | 2998 | 1.562783 | ACCTTGCTGAGTACTCCCTC | 58.437 | 55.000 | 20.11 | 9.40 | 0.00 | 4.30 |
2668 | 2999 | 2.458620 | GTACCTTGCTGAGTACTCCCT | 58.541 | 52.381 | 20.11 | 0.00 | 36.69 | 4.20 |
2669 | 3000 | 1.481363 | GGTACCTTGCTGAGTACTCCC | 59.519 | 57.143 | 20.11 | 11.47 | 39.07 | 4.30 |
2670 | 3001 | 2.094130 | GTGGTACCTTGCTGAGTACTCC | 60.094 | 54.545 | 20.11 | 6.32 | 39.07 | 3.85 |
2671 | 3002 | 2.561419 | TGTGGTACCTTGCTGAGTACTC | 59.439 | 50.000 | 16.32 | 16.32 | 39.07 | 2.59 |
2672 | 3003 | 2.605257 | TGTGGTACCTTGCTGAGTACT | 58.395 | 47.619 | 14.36 | 0.00 | 39.07 | 2.73 |
2673 | 3004 | 3.611766 | ATGTGGTACCTTGCTGAGTAC | 57.388 | 47.619 | 14.36 | 0.00 | 38.49 | 2.73 |
2674 | 3005 | 4.634012 | AAATGTGGTACCTTGCTGAGTA | 57.366 | 40.909 | 14.36 | 0.00 | 0.00 | 2.59 |
2679 | 3010 | 6.493458 | AGACAAAATAAATGTGGTACCTTGCT | 59.507 | 34.615 | 14.36 | 5.00 | 0.00 | 3.91 |
2680 | 3011 | 6.687604 | AGACAAAATAAATGTGGTACCTTGC | 58.312 | 36.000 | 14.36 | 4.15 | 0.00 | 4.01 |
2684 | 3015 | 8.788325 | AGACTAGACAAAATAAATGTGGTACC | 57.212 | 34.615 | 4.43 | 4.43 | 0.00 | 3.34 |
2718 | 3049 | 7.505585 | TGATGGGTTCAGTTCTGTAAAGAAAAT | 59.494 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2728 | 3059 | 2.862541 | TGGTTGATGGGTTCAGTTCTG | 58.137 | 47.619 | 0.00 | 0.00 | 35.27 | 3.02 |
2765 | 3097 | 8.035394 | GTCACCATAACATTCAGGACGATATAT | 58.965 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.