Multiple sequence alignment - TraesCS1D01G109900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G109900 chr1D 100.000 5187 0 0 1 5187 103486173 103480987 0.000000e+00 9579.0
1 TraesCS1D01G109900 chr1A 96.231 2653 73 11 1893 4534 101321591 101324227 0.000000e+00 4320.0
2 TraesCS1D01G109900 chr1A 94.831 890 37 5 674 1558 101320628 101321513 0.000000e+00 1380.0
3 TraesCS1D01G109900 chr1A 89.528 678 59 8 1 670 101319639 101320312 0.000000e+00 848.0
4 TraesCS1D01G109900 chr1A 92.157 408 26 3 4581 4988 101324228 101324629 5.830000e-159 571.0
5 TraesCS1D01G109900 chr1A 87.805 123 6 2 5074 5187 101330891 101331013 9.060000e-28 135.0
6 TraesCS1D01G109900 chr1A 87.500 88 4 5 1629 1710 101321519 101321605 1.540000e-15 95.3
7 TraesCS1D01G109900 chr1B 95.825 1581 51 10 1893 3459 162780227 162781806 0.000000e+00 2540.0
8 TraesCS1D01G109900 chr1B 92.701 1096 46 14 3457 4543 162781919 162782989 0.000000e+00 1550.0
9 TraesCS1D01G109900 chr1B 95.489 665 26 2 794 1455 162779105 162779768 0.000000e+00 1059.0
10 TraesCS1D01G109900 chr1B 92.063 630 40 6 4558 5182 162800906 162801530 0.000000e+00 878.0
11 TraesCS1D01G109900 chr5B 76.552 145 27 6 4709 4847 142202901 142202758 7.200000e-09 73.1
12 TraesCS1D01G109900 chr3D 77.273 110 24 1 4809 4918 76393607 76393715 4.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G109900 chr1D 103480987 103486173 5186 True 9579.000000 9579 100.000000 1 5187 1 chr1D.!!$R1 5186
1 TraesCS1D01G109900 chr1A 101319639 101324629 4990 False 1442.860000 4320 92.049400 1 4988 5 chr1A.!!$F2 4987
2 TraesCS1D01G109900 chr1B 162779105 162782989 3884 False 1716.333333 2540 94.671667 794 4543 3 chr1B.!!$F2 3749
3 TraesCS1D01G109900 chr1B 162800906 162801530 624 False 878.000000 878 92.063000 4558 5182 1 chr1B.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 367 0.108615 CCGAGAGCTGGTTGTCGAAT 60.109 55.0 12.37 0.0 36.08 3.34 F
1745 2351 0.032416 TGCTAGGGAGTAGGGACACC 60.032 60.0 0.00 0.0 35.68 4.16 F
2300 2913 1.959042 ATTCATGACGGCAGATGGAC 58.041 50.0 0.00 0.0 0.00 4.02 F
3221 3834 0.338814 AGGGTGGTCTTACGGATCCT 59.661 55.0 10.75 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2913 0.026285 CGGCTGAAATAACTTCCGCG 59.974 55.000 0.0 0.0 43.23 6.46 R
3221 3834 1.289231 AGTAGATGGCTCACCTCTCCA 59.711 52.381 0.0 0.0 36.63 3.86 R
3998 4739 0.250467 GAAGCTGTGTGCCCAGAAGA 60.250 55.000 0.0 0.0 44.23 2.87 R
4948 5696 0.107456 CAGCCTAATGGGAGCACGAT 59.893 55.000 0.0 0.0 37.23 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.331756 GCCATACATGCCAAGAAGTCG 59.668 52.381 0.00 0.00 0.00 4.18
44 45 1.200716 CATGCCAAGAAGTCGTGCAAT 59.799 47.619 0.00 0.00 0.00 3.56
150 153 6.928492 GCCACAATTTTAATCTCCAAGAACAA 59.072 34.615 0.00 0.00 0.00 2.83
196 199 2.095263 CAGACAGCAACCCAAATAACCG 60.095 50.000 0.00 0.00 0.00 4.44
219 227 4.060205 GGCAATCAATCACATATTTGGCC 58.940 43.478 0.00 0.00 0.00 5.36
223 231 6.575267 CAATCAATCACATATTTGGCCTGAA 58.425 36.000 3.32 0.00 0.00 3.02
227 235 7.098477 TCAATCACATATTTGGCCTGAAAAAG 58.902 34.615 3.32 0.00 0.00 2.27
243 251 6.640907 CCTGAAAAAGAAAGACCAAATAACCG 59.359 38.462 0.00 0.00 0.00 4.44
260 268 0.825840 CCGGTGTTGTCATTGGGGTT 60.826 55.000 0.00 0.00 0.00 4.11
273 281 4.362476 GGGTTGCCCGCAAAGCAG 62.362 66.667 3.19 0.00 42.17 4.24
279 287 3.041701 CCCGCAAAGCAGAAGCAA 58.958 55.556 0.00 0.00 45.49 3.91
289 297 1.005340 GCAGAAGCAACTCATCTCGG 58.995 55.000 0.00 0.00 41.58 4.63
295 303 0.950555 GCAACTCATCTCGGCACACA 60.951 55.000 0.00 0.00 0.00 3.72
300 308 0.321346 TCATCTCGGCACACACATGT 59.679 50.000 0.00 0.00 40.80 3.21
302 310 0.391661 ATCTCGGCACACACATGTCC 60.392 55.000 0.00 0.00 36.72 4.02
303 311 1.301637 CTCGGCACACACATGTCCA 60.302 57.895 0.00 0.00 36.72 4.02
304 312 0.674581 CTCGGCACACACATGTCCAT 60.675 55.000 0.00 0.00 36.72 3.41
312 320 1.126662 CACACATGTCCATCACGAACG 59.873 52.381 0.00 0.00 0.00 3.95
314 322 0.320334 ACATGTCCATCACGAACGCA 60.320 50.000 0.00 0.00 0.00 5.24
340 348 4.202060 TGAGAGGATTGTCTCGCTATTGTC 60.202 45.833 0.00 0.00 45.28 3.18
341 349 3.068873 AGAGGATTGTCTCGCTATTGTCC 59.931 47.826 0.00 0.00 38.71 4.02
343 351 2.223735 GGATTGTCTCGCTATTGTCCGA 60.224 50.000 0.00 0.00 0.00 4.55
359 367 0.108615 CCGAGAGCTGGTTGTCGAAT 60.109 55.000 12.37 0.00 36.08 3.34
360 368 0.994995 CGAGAGCTGGTTGTCGAATG 59.005 55.000 0.00 0.00 36.08 2.67
400 408 6.109359 CGAGACAAATGGTAGAAAGAAGGAT 58.891 40.000 0.00 0.00 0.00 3.24
433 441 6.923508 CGCAACATATATAAGGAACTGTCTGA 59.076 38.462 0.00 0.00 40.86 3.27
452 460 4.750098 TCTGAAAAGAAGAGGCAAGTAACG 59.250 41.667 0.00 0.00 0.00 3.18
454 462 4.879545 TGAAAAGAAGAGGCAAGTAACGTT 59.120 37.500 5.88 5.88 0.00 3.99
456 464 3.470645 AGAAGAGGCAAGTAACGTTGT 57.529 42.857 11.99 0.00 0.00 3.32
462 470 1.202200 GGCAAGTAACGTTGTTGCACA 60.202 47.619 33.17 6.56 46.86 4.57
466 474 4.215965 CAAGTAACGTTGTTGCACATACC 58.784 43.478 11.99 0.00 0.00 2.73
468 476 3.496884 AGTAACGTTGTTGCACATACCAG 59.503 43.478 11.99 0.00 0.00 4.00
469 477 2.248280 ACGTTGTTGCACATACCAGA 57.752 45.000 0.00 0.00 0.00 3.86
473 481 3.241963 CGTTGTTGCACATACCAGATACG 60.242 47.826 0.00 0.00 0.00 3.06
486 494 2.094597 CCAGATACGGTTACGGTGTGAA 60.095 50.000 5.81 0.00 46.48 3.18
509 518 2.167861 GCGAGCTTCATCCCGTCAC 61.168 63.158 0.00 0.00 0.00 3.67
524 533 0.801067 GTCACTATGGTGTCGCCGAC 60.801 60.000 10.96 10.96 43.41 4.79
535 544 0.945743 GTCGCCGACGGTTTTAGGTT 60.946 55.000 16.73 0.00 40.63 3.50
557 566 3.209410 GGATGCTGGAAGACGATTGAAT 58.791 45.455 0.00 0.00 34.07 2.57
592 601 9.584008 AAGATTAATGATAGGATGAACATTGCT 57.416 29.630 0.00 0.00 35.19 3.91
599 608 0.743097 GATGAACATTGCTGGCCTCC 59.257 55.000 3.32 0.00 0.00 4.30
600 609 0.685458 ATGAACATTGCTGGCCTCCC 60.685 55.000 3.32 0.00 0.00 4.30
613 622 1.322442 GCCTCCCATACATGCTTTCC 58.678 55.000 0.00 0.00 0.00 3.13
625 634 0.606096 TGCTTTCCCTCGATTCGTGA 59.394 50.000 9.55 1.33 0.00 4.35
632 641 1.630148 CCTCGATTCGTGAGGTGTTC 58.370 55.000 9.55 0.00 46.49 3.18
642 651 3.697045 TCGTGAGGTGTTCCACAATTTTT 59.303 39.130 0.00 0.00 36.19 1.94
646 655 6.569780 GTGAGGTGTTCCACAATTTTTAACT 58.430 36.000 0.00 0.00 36.19 2.24
648 657 6.378564 TGAGGTGTTCCACAATTTTTAACTCA 59.621 34.615 0.00 0.00 35.86 3.41
661 670 5.717078 TTTTAACTCAACTAGCGAGAGGA 57.283 39.130 14.94 0.00 34.47 3.71
670 679 1.322538 TAGCGAGAGGACATGCAGCA 61.323 55.000 0.00 0.00 0.00 4.41
672 681 1.217511 CGAGAGGACATGCAGCACT 59.782 57.895 0.00 0.00 0.00 4.40
673 682 0.457443 CGAGAGGACATGCAGCACTA 59.543 55.000 0.00 0.00 0.00 2.74
722 1043 7.665690 TGGCAAATCTTACACAACAACATTAT 58.334 30.769 0.00 0.00 0.00 1.28
765 1086 2.729882 ACAAATGTAGACGTTCGCTCAC 59.270 45.455 0.00 0.00 0.00 3.51
769 1090 2.121786 TGTAGACGTTCGCTCACAAAC 58.878 47.619 0.00 0.00 0.00 2.93
775 1096 1.071107 CGTTCGCTCACAAACGCTAAA 60.071 47.619 0.00 0.00 41.34 1.85
777 1098 3.356145 GTTCGCTCACAAACGCTAAAAA 58.644 40.909 0.00 0.00 0.00 1.94
842 1168 4.367039 TCCGGAGAAATTCAGTTTTCCT 57.633 40.909 0.00 0.00 36.47 3.36
846 1172 5.006746 CCGGAGAAATTCAGTTTTCCTATCG 59.993 44.000 0.00 0.00 36.47 2.92
1122 1448 3.385384 CTGCGTCTCCCTGCCTCA 61.385 66.667 0.00 0.00 0.00 3.86
1128 1454 1.537397 TCTCCCTGCCTCAGTTGCT 60.537 57.895 0.00 0.00 0.00 3.91
1314 1643 3.112075 CTCTTCCGCGCGCTCAAA 61.112 61.111 30.48 18.28 0.00 2.69
1479 1995 1.354368 GATTTTGGAGACTGGGGGTGA 59.646 52.381 0.00 0.00 0.00 4.02
1481 1997 1.779061 TTTGGAGACTGGGGGTGAGC 61.779 60.000 0.00 0.00 0.00 4.26
1490 2006 1.671379 GGGGGTGAGCTTTCGTGTC 60.671 63.158 0.00 0.00 0.00 3.67
1495 2011 1.005037 TGAGCTTTCGTGTCCGCAT 60.005 52.632 0.00 0.00 0.00 4.73
1496 2012 1.291184 TGAGCTTTCGTGTCCGCATG 61.291 55.000 0.00 0.00 0.00 4.06
1497 2013 1.005037 AGCTTTCGTGTCCGCATGA 60.005 52.632 0.00 0.00 38.74 3.07
1498 2014 0.391661 AGCTTTCGTGTCCGCATGAT 60.392 50.000 0.00 0.00 40.03 2.45
1516 2035 7.429340 CCGCATGATTGAACAAGTAGAATTTAC 59.571 37.037 0.00 0.00 0.00 2.01
1534 2053 9.084533 AGAATTTACTAATTGTTGGCCTGTTAA 57.915 29.630 3.32 0.00 34.16 2.01
1559 2078 2.649312 TGGGTTCCTGGATCAAGTTCAT 59.351 45.455 0.00 0.00 0.00 2.57
1563 2082 5.253330 GGTTCCTGGATCAAGTTCATGTTA 58.747 41.667 0.00 0.00 0.00 2.41
1564 2083 5.888161 GGTTCCTGGATCAAGTTCATGTTAT 59.112 40.000 0.00 0.00 0.00 1.89
1565 2084 6.378280 GGTTCCTGGATCAAGTTCATGTTATT 59.622 38.462 0.00 0.00 0.00 1.40
1566 2085 7.093771 GGTTCCTGGATCAAGTTCATGTTATTT 60.094 37.037 0.00 0.00 0.00 1.40
1567 2086 8.956426 GTTCCTGGATCAAGTTCATGTTATTTA 58.044 33.333 0.00 0.00 0.00 1.40
1568 2087 9.699410 TTCCTGGATCAAGTTCATGTTATTTAT 57.301 29.630 0.00 0.00 0.00 1.40
1569 2088 9.699410 TCCTGGATCAAGTTCATGTTATTTATT 57.301 29.630 0.00 0.00 0.00 1.40
1594 2113 7.931578 ATTTATGTTCGGGTTTACAGATTGA 57.068 32.000 0.00 0.00 0.00 2.57
1595 2114 7.747155 TTTATGTTCGGGTTTACAGATTGAA 57.253 32.000 0.00 0.00 0.00 2.69
1596 2115 7.747155 TTATGTTCGGGTTTACAGATTGAAA 57.253 32.000 0.00 0.00 0.00 2.69
1597 2116 5.427036 TGTTCGGGTTTACAGATTGAAAC 57.573 39.130 0.00 0.00 35.28 2.78
1598 2117 4.882427 TGTTCGGGTTTACAGATTGAAACA 59.118 37.500 0.00 0.00 37.30 2.83
1599 2118 5.357314 TGTTCGGGTTTACAGATTGAAACAA 59.643 36.000 0.00 0.00 37.30 2.83
1600 2119 6.127703 TGTTCGGGTTTACAGATTGAAACAAA 60.128 34.615 0.00 0.00 37.30 2.83
1601 2120 6.452494 TCGGGTTTACAGATTGAAACAAAA 57.548 33.333 0.00 0.00 37.30 2.44
1602 2121 7.045126 TCGGGTTTACAGATTGAAACAAAAT 57.955 32.000 0.00 0.00 37.30 1.82
1603 2122 7.493367 TCGGGTTTACAGATTGAAACAAAATT 58.507 30.769 0.00 0.00 37.30 1.82
1604 2123 8.630917 TCGGGTTTACAGATTGAAACAAAATTA 58.369 29.630 0.00 0.00 37.30 1.40
1605 2124 9.418045 CGGGTTTACAGATTGAAACAAAATTAT 57.582 29.630 0.00 0.00 37.30 1.28
1638 2157 9.702494 ATTTGAGAAGGATTGAAACAAGAATTC 57.298 29.630 0.00 0.00 0.00 2.17
1699 2305 9.507280 CGAATTCTGTTAAATGCATAAGTTCAT 57.493 29.630 0.00 0.00 0.00 2.57
1702 2308 9.807649 ATTCTGTTAAATGCATAAGTTCATTCC 57.192 29.630 0.00 0.00 32.27 3.01
1703 2309 7.771183 TCTGTTAAATGCATAAGTTCATTCCC 58.229 34.615 0.00 0.00 32.27 3.97
1704 2310 6.559810 TGTTAAATGCATAAGTTCATTCCCG 58.440 36.000 0.00 0.00 32.27 5.14
1705 2311 6.151985 TGTTAAATGCATAAGTTCATTCCCGT 59.848 34.615 0.00 0.00 32.27 5.28
1706 2312 5.659440 AAATGCATAAGTTCATTCCCGTT 57.341 34.783 0.00 0.00 32.27 4.44
1707 2313 5.659440 AATGCATAAGTTCATTCCCGTTT 57.341 34.783 0.00 0.00 0.00 3.60
1708 2314 4.695217 TGCATAAGTTCATTCCCGTTTC 57.305 40.909 0.00 0.00 0.00 2.78
1709 2315 4.075682 TGCATAAGTTCATTCCCGTTTCA 58.924 39.130 0.00 0.00 0.00 2.69
1710 2316 4.520874 TGCATAAGTTCATTCCCGTTTCAA 59.479 37.500 0.00 0.00 0.00 2.69
1711 2317 5.184864 TGCATAAGTTCATTCCCGTTTCAAT 59.815 36.000 0.00 0.00 0.00 2.57
1712 2318 5.516339 GCATAAGTTCATTCCCGTTTCAATG 59.484 40.000 0.00 0.00 0.00 2.82
1713 2319 6.624861 GCATAAGTTCATTCCCGTTTCAATGA 60.625 38.462 0.00 0.00 37.26 2.57
1714 2320 5.982890 AAGTTCATTCCCGTTTCAATGAT 57.017 34.783 0.00 0.00 38.51 2.45
1715 2321 8.620416 CATAAGTTCATTCCCGTTTCAATGATA 58.380 33.333 0.00 0.00 38.51 2.15
1716 2322 7.645058 AAGTTCATTCCCGTTTCAATGATAT 57.355 32.000 0.00 0.00 38.51 1.63
1717 2323 7.264373 AGTTCATTCCCGTTTCAATGATATC 57.736 36.000 0.00 0.00 38.51 1.63
1718 2324 6.263168 AGTTCATTCCCGTTTCAATGATATCC 59.737 38.462 0.00 0.00 38.51 2.59
1719 2325 5.689835 TCATTCCCGTTTCAATGATATCCA 58.310 37.500 0.00 0.00 34.71 3.41
1720 2326 6.306199 TCATTCCCGTTTCAATGATATCCAT 58.694 36.000 0.00 0.00 34.71 3.41
1721 2327 6.777091 TCATTCCCGTTTCAATGATATCCATT 59.223 34.615 0.00 0.00 45.88 3.16
1722 2328 7.287466 TCATTCCCGTTTCAATGATATCCATTT 59.713 33.333 0.00 0.00 42.55 2.32
1723 2329 7.416964 TTCCCGTTTCAATGATATCCATTTT 57.583 32.000 0.00 0.00 42.55 1.82
1724 2330 8.526667 TTCCCGTTTCAATGATATCCATTTTA 57.473 30.769 0.00 0.00 42.55 1.52
1725 2331 8.526667 TCCCGTTTCAATGATATCCATTTTAA 57.473 30.769 0.00 0.00 42.55 1.52
1726 2332 9.142014 TCCCGTTTCAATGATATCCATTTTAAT 57.858 29.630 0.00 0.00 42.55 1.40
1727 2333 9.195411 CCCGTTTCAATGATATCCATTTTAATG 57.805 33.333 0.00 0.00 42.55 1.90
1728 2334 8.702438 CCGTTTCAATGATATCCATTTTAATGC 58.298 33.333 0.00 0.00 42.55 3.56
1729 2335 9.467258 CGTTTCAATGATATCCATTTTAATGCT 57.533 29.630 0.00 0.00 42.55 3.79
1733 2339 9.246670 TCAATGATATCCATTTTAATGCTAGGG 57.753 33.333 0.00 0.00 42.55 3.53
1734 2340 9.246670 CAATGATATCCATTTTAATGCTAGGGA 57.753 33.333 0.00 0.00 42.55 4.20
1735 2341 9.471702 AATGATATCCATTTTAATGCTAGGGAG 57.528 33.333 0.00 0.00 42.55 4.30
1736 2342 7.988937 TGATATCCATTTTAATGCTAGGGAGT 58.011 34.615 0.00 0.00 35.08 3.85
1737 2343 9.111519 TGATATCCATTTTAATGCTAGGGAGTA 57.888 33.333 0.00 0.00 35.08 2.59
1738 2344 9.606631 GATATCCATTTTAATGCTAGGGAGTAG 57.393 37.037 0.00 0.00 35.08 2.57
1739 2345 6.187727 TCCATTTTAATGCTAGGGAGTAGG 57.812 41.667 0.00 0.00 35.08 3.18
1740 2346 5.073144 TCCATTTTAATGCTAGGGAGTAGGG 59.927 44.000 0.00 0.00 35.08 3.53
1741 2347 5.073144 CCATTTTAATGCTAGGGAGTAGGGA 59.927 44.000 0.00 0.00 35.08 4.20
1742 2348 5.625568 TTTTAATGCTAGGGAGTAGGGAC 57.374 43.478 0.00 0.00 0.00 4.46
1743 2349 2.868964 AATGCTAGGGAGTAGGGACA 57.131 50.000 0.00 0.00 0.00 4.02
1744 2350 2.089600 ATGCTAGGGAGTAGGGACAC 57.910 55.000 0.00 0.00 0.00 3.67
1745 2351 0.032416 TGCTAGGGAGTAGGGACACC 60.032 60.000 0.00 0.00 35.68 4.16
1758 2364 3.713826 GGGACACCCAGATTAAGTGAA 57.286 47.619 1.54 0.00 44.65 3.18
1759 2365 3.344515 GGGACACCCAGATTAAGTGAAC 58.655 50.000 1.54 0.00 44.65 3.18
1760 2366 3.009143 GGGACACCCAGATTAAGTGAACT 59.991 47.826 1.54 0.00 44.65 3.01
1761 2367 4.254492 GGACACCCAGATTAAGTGAACTC 58.746 47.826 0.00 0.00 35.47 3.01
1762 2368 4.020128 GGACACCCAGATTAAGTGAACTCT 60.020 45.833 0.00 0.00 35.47 3.24
1763 2369 5.513267 GGACACCCAGATTAAGTGAACTCTT 60.513 44.000 0.00 0.00 35.47 2.85
1764 2370 5.941788 ACACCCAGATTAAGTGAACTCTTT 58.058 37.500 0.00 0.00 35.47 2.52
1765 2371 5.998363 ACACCCAGATTAAGTGAACTCTTTC 59.002 40.000 0.00 0.00 35.47 2.62
1766 2372 6.183361 ACACCCAGATTAAGTGAACTCTTTCT 60.183 38.462 0.00 0.00 35.47 2.52
1767 2373 6.148480 CACCCAGATTAAGTGAACTCTTTCTG 59.852 42.308 9.46 9.46 34.61 3.02
1768 2374 6.043243 ACCCAGATTAAGTGAACTCTTTCTGA 59.957 38.462 14.46 0.00 35.78 3.27
1769 2375 6.936900 CCCAGATTAAGTGAACTCTTTCTGAA 59.063 38.462 14.46 0.00 35.78 3.02
1770 2376 7.445402 CCCAGATTAAGTGAACTCTTTCTGAAA 59.555 37.037 14.46 2.44 35.78 2.69
1771 2377 9.007901 CCAGATTAAGTGAACTCTTTCTGAAAT 57.992 33.333 2.88 0.00 35.78 2.17
1781 2387 9.973661 TGAACTCTTTCTGAAATATATTTCCCA 57.026 29.630 27.53 15.62 44.16 4.37
1783 2389 9.981460 AACTCTTTCTGAAATATATTTCCCAGT 57.019 29.630 27.53 18.42 44.16 4.00
1788 2394 9.967451 TTTCTGAAATATATTTCCCAGTACACA 57.033 29.630 27.53 11.31 44.16 3.72
1793 2399 9.965824 GAAATATATTTCCCAGTACACATTTGG 57.034 33.333 22.55 0.00 40.10 3.28
1794 2400 9.487442 AAATATATTTCCCAGTACACATTTGGT 57.513 29.630 4.81 0.00 0.00 3.67
1807 2413 4.742417 CACATTTGGTGTTCTGTTGTTGA 58.258 39.130 0.00 0.00 42.75 3.18
1808 2414 5.167121 CACATTTGGTGTTCTGTTGTTGAA 58.833 37.500 0.00 0.00 42.75 2.69
1809 2415 5.811613 CACATTTGGTGTTCTGTTGTTGAAT 59.188 36.000 0.00 0.00 42.75 2.57
1810 2416 5.811613 ACATTTGGTGTTCTGTTGTTGAATG 59.188 36.000 0.00 0.00 38.01 2.67
1811 2417 3.435105 TGGTGTTCTGTTGTTGAATGC 57.565 42.857 0.00 0.00 0.00 3.56
1812 2418 2.757314 TGGTGTTCTGTTGTTGAATGCA 59.243 40.909 0.00 0.00 0.00 3.96
1813 2419 3.384146 TGGTGTTCTGTTGTTGAATGCAT 59.616 39.130 0.00 0.00 0.00 3.96
1814 2420 3.983344 GGTGTTCTGTTGTTGAATGCATC 59.017 43.478 0.00 0.00 0.00 3.91
1815 2421 3.665409 GTGTTCTGTTGTTGAATGCATCG 59.335 43.478 0.00 0.00 0.00 3.84
1816 2422 3.563390 TGTTCTGTTGTTGAATGCATCGA 59.437 39.130 0.00 0.00 0.00 3.59
1817 2423 4.036144 TGTTCTGTTGTTGAATGCATCGAA 59.964 37.500 0.00 0.00 0.00 3.71
1818 2424 4.827304 TCTGTTGTTGAATGCATCGAAA 57.173 36.364 0.00 0.00 0.00 3.46
1819 2425 4.786507 TCTGTTGTTGAATGCATCGAAAG 58.213 39.130 0.00 0.00 0.00 2.62
1839 2445 9.653287 TCGAAAGAAGTCACTGAATAATATTGT 57.347 29.630 0.00 0.00 37.03 2.71
1840 2446 9.694520 CGAAAGAAGTCACTGAATAATATTGTG 57.305 33.333 0.00 0.00 0.00 3.33
1847 2453 9.719355 AGTCACTGAATAATATTGTGTACAACA 57.281 29.630 0.00 0.00 38.86 3.33
1864 2470 9.595357 GTGTACAACAATTAGAACTTAGAAAGC 57.405 33.333 0.00 0.00 0.00 3.51
1865 2471 9.332502 TGTACAACAATTAGAACTTAGAAAGCA 57.667 29.630 0.00 0.00 0.00 3.91
1882 2488 5.739752 AAAGCAAAATCTGTTTTCTTGCC 57.260 34.783 1.71 0.00 33.60 4.52
1883 2489 4.405116 AGCAAAATCTGTTTTCTTGCCA 57.595 36.364 1.71 0.00 35.41 4.92
1884 2490 4.964593 AGCAAAATCTGTTTTCTTGCCAT 58.035 34.783 1.71 0.00 35.41 4.40
1885 2491 4.753107 AGCAAAATCTGTTTTCTTGCCATG 59.247 37.500 1.71 0.00 35.41 3.66
1886 2492 4.083696 GCAAAATCTGTTTTCTTGCCATGG 60.084 41.667 7.63 7.63 35.41 3.66
1887 2493 3.323751 AATCTGTTTTCTTGCCATGGC 57.676 42.857 30.54 30.54 42.35 4.40
1888 2494 4.444591 AAAATCTGTTTTCTTGCCATGGCA 60.445 37.500 35.59 35.59 40.22 4.92
1889 2495 6.484713 AAAATCTGTTTTCTTGCCATGGCAC 61.485 40.000 38.75 25.36 41.04 5.01
1900 2506 2.053865 CATGGCACCGGCATTCCTT 61.054 57.895 0.00 0.00 46.61 3.36
1915 2523 4.515191 GCATTCCTTGTTTCAGTCACACTA 59.485 41.667 0.00 0.00 0.00 2.74
1916 2524 5.008613 GCATTCCTTGTTTCAGTCACACTAA 59.991 40.000 0.00 0.00 0.00 2.24
1976 2588 8.771920 TTATTTAGTTTCATGTCACTGATCGT 57.228 30.769 9.11 0.00 0.00 3.73
2141 2754 7.227512 CGATTAGGCTCTTTGACCAATTTCTAT 59.772 37.037 0.00 0.00 0.00 1.98
2143 2756 8.650143 TTAGGCTCTTTGACCAATTTCTATTT 57.350 30.769 0.00 0.00 0.00 1.40
2255 2868 5.489792 TCCACTCTTAAGCTCTCATGTTT 57.510 39.130 0.00 0.00 0.00 2.83
2283 2896 8.650490 ACAGGGATTTTGAATTCTTGTTGTATT 58.350 29.630 7.05 0.00 0.00 1.89
2300 2913 1.959042 ATTCATGACGGCAGATGGAC 58.041 50.000 0.00 0.00 0.00 4.02
2675 3288 4.707448 TCGCTAGAGTTGGAAGATCTTTCT 59.293 41.667 14.94 12.54 0.00 2.52
2699 3312 8.215050 TCTTTTAGGTACTTGTTTCCTCATTCA 58.785 33.333 0.00 0.00 41.75 2.57
3221 3834 0.338814 AGGGTGGTCTTACGGATCCT 59.661 55.000 10.75 0.00 0.00 3.24
3260 3873 9.103861 CATCTACTTAATTCCAACTCTCTTTCC 57.896 37.037 0.00 0.00 0.00 3.13
3275 3888 5.855045 TCTCTTTCCTCCTTTGAAGTACAC 58.145 41.667 0.00 0.00 0.00 2.90
3297 3910 7.050377 ACACTGAATCGTCTGGATTTATCAAT 58.950 34.615 0.00 0.00 45.33 2.57
3352 3965 4.466827 AGTTGTTTTATCGAACCAAGGGT 58.533 39.130 0.00 0.00 37.65 4.34
3404 4026 3.333029 TGCTGCTTGCTACAAGATACA 57.667 42.857 11.38 2.65 43.37 2.29
3529 4266 8.380099 TGGTTTATGTTCCTAACTGATACACTT 58.620 33.333 0.00 0.00 0.00 3.16
3539 4276 4.815533 ACTGATACACTTGTCTGCTGAT 57.184 40.909 0.00 0.00 0.00 2.90
3699 4440 2.979676 TTGGCTGCGGCAGAACTG 60.980 61.111 32.72 8.04 39.75 3.16
3959 4700 2.237643 TGGGTGCAAGTTATACATCCGT 59.762 45.455 0.00 0.00 37.40 4.69
3981 4722 5.694910 CGTGACAAGTTATCCTAACACAGTT 59.305 40.000 0.00 0.00 0.00 3.16
3998 4739 4.449068 CACAGTTGTATTCTCAAAGTCGCT 59.551 41.667 0.00 0.00 0.00 4.93
4033 4774 7.862873 CACACAGCTTCTGATATATTCGAAGTA 59.137 37.037 18.43 0.00 37.34 2.24
4063 4804 5.824624 GGCTTATCAGGTTGAATTGATGAGA 59.175 40.000 14.26 0.00 38.82 3.27
4112 4853 6.777213 ACACGAAGATACTGAAGGATAAGT 57.223 37.500 0.00 0.00 0.00 2.24
4233 4975 5.897377 ACTGCGCTAAACTAAAATGGATT 57.103 34.783 9.73 0.00 0.00 3.01
4262 5004 4.300189 TGTAGTTTTGATGTTGGTGCAC 57.700 40.909 8.80 8.80 0.00 4.57
4308 5050 7.538575 ACAGCATTGAATTGTACATACTTTCC 58.461 34.615 0.00 0.00 0.00 3.13
4363 5105 6.838382 ACAAAGTAAAGGTTGTCCTCTACAT 58.162 36.000 1.47 0.00 44.35 2.29
4365 5107 7.228706 ACAAAGTAAAGGTTGTCCTCTACATTG 59.771 37.037 11.57 11.57 44.62 2.82
4366 5108 6.435292 AGTAAAGGTTGTCCTCTACATTGT 57.565 37.500 0.00 0.00 44.35 2.71
4367 5109 6.231211 AGTAAAGGTTGTCCTCTACATTGTG 58.769 40.000 0.00 0.00 44.35 3.33
4368 5110 3.059352 AGGTTGTCCTCTACATTGTGC 57.941 47.619 0.00 0.00 40.58 4.57
4377 5119 2.676839 CTCTACATTGTGCCAGAAGCTG 59.323 50.000 0.00 0.00 44.23 4.24
4390 5132 1.860484 GAAGCTGGCTGTGGCACTTC 61.860 60.000 19.83 8.39 38.17 3.01
4464 5209 9.897744 ACTTACATCATGTTGTTATGAAAACAG 57.102 29.630 14.35 1.68 40.21 3.16
4497 5243 2.356432 GGGTATCCTTTGTAGCGGGTTT 60.356 50.000 0.00 0.00 0.00 3.27
4519 5265 7.041644 GGTTTGTGAAATGTAAGTAGCAGTGTA 60.042 37.037 0.00 0.00 0.00 2.90
4526 5272 3.760151 TGTAAGTAGCAGTGTATGACGGT 59.240 43.478 0.00 0.00 0.00 4.83
4534 5280 6.406692 AGCAGTGTATGACGGTCTTATAAT 57.593 37.500 9.88 2.59 0.00 1.28
4535 5281 6.216569 AGCAGTGTATGACGGTCTTATAATG 58.783 40.000 17.62 17.62 0.00 1.90
4536 5282 6.040504 AGCAGTGTATGACGGTCTTATAATGA 59.959 38.462 22.74 0.00 0.00 2.57
4537 5283 6.700081 GCAGTGTATGACGGTCTTATAATGAA 59.300 38.462 22.74 0.00 0.00 2.57
4538 5284 7.096023 GCAGTGTATGACGGTCTTATAATGAAG 60.096 40.741 22.74 6.25 0.00 3.02
4539 5285 7.382488 CAGTGTATGACGGTCTTATAATGAAGG 59.618 40.741 17.26 0.00 0.00 3.46
4540 5286 7.069578 AGTGTATGACGGTCTTATAATGAAGGT 59.930 37.037 9.88 0.00 0.00 3.50
4541 5287 7.381678 GTGTATGACGGTCTTATAATGAAGGTC 59.618 40.741 9.88 0.00 0.00 3.85
4542 5288 5.925506 TGACGGTCTTATAATGAAGGTCA 57.074 39.130 9.88 11.18 0.00 4.02
4543 5289 6.479972 TGACGGTCTTATAATGAAGGTCAT 57.520 37.500 9.88 0.00 39.09 3.06
4545 5291 6.761242 TGACGGTCTTATAATGAAGGTCATTG 59.239 38.462 12.63 0.00 45.77 2.82
4546 5292 6.650120 ACGGTCTTATAATGAAGGTCATTGT 58.350 36.000 12.63 9.07 45.77 2.71
4547 5293 7.788026 ACGGTCTTATAATGAAGGTCATTGTA 58.212 34.615 12.63 8.19 45.77 2.41
4548 5294 7.709613 ACGGTCTTATAATGAAGGTCATTGTAC 59.290 37.037 12.63 3.15 45.77 2.90
4549 5295 7.096189 CGGTCTTATAATGAAGGTCATTGTACG 60.096 40.741 12.63 8.65 45.77 3.67
4550 5296 7.170998 GGTCTTATAATGAAGGTCATTGTACGG 59.829 40.741 12.63 6.99 45.77 4.02
4551 5297 6.704493 TCTTATAATGAAGGTCATTGTACGGC 59.296 38.462 12.63 0.00 45.77 5.68
4552 5298 2.038387 ATGAAGGTCATTGTACGGCC 57.962 50.000 0.00 0.00 32.13 6.13
4553 5299 0.981183 TGAAGGTCATTGTACGGCCT 59.019 50.000 0.00 0.00 0.00 5.19
4554 5300 1.349688 TGAAGGTCATTGTACGGCCTT 59.650 47.619 4.98 4.98 41.69 4.35
4555 5301 2.568062 TGAAGGTCATTGTACGGCCTTA 59.432 45.455 0.00 0.00 39.39 2.69
4556 5302 3.199071 TGAAGGTCATTGTACGGCCTTAT 59.801 43.478 0.00 0.00 39.39 1.73
4654 5402 4.895297 TGACCTATGTCATATGAGCAGTCA 59.105 41.667 5.42 11.77 46.40 3.41
4655 5403 5.541484 TGACCTATGTCATATGAGCAGTCAT 59.459 40.000 5.42 8.19 46.40 3.06
4656 5404 6.035368 ACCTATGTCATATGAGCAGTCATC 57.965 41.667 5.42 0.00 42.80 2.92
4657 5405 5.541484 ACCTATGTCATATGAGCAGTCATCA 59.459 40.000 5.42 0.00 42.80 3.07
4658 5406 6.042437 ACCTATGTCATATGAGCAGTCATCAA 59.958 38.462 5.42 0.00 42.80 2.57
4675 5423 2.306847 TCAAGGAAAAGGGCTTGACAC 58.693 47.619 0.00 0.00 31.81 3.67
4681 5429 3.440522 GGAAAAGGGCTTGACACACTATC 59.559 47.826 0.00 0.00 0.00 2.08
4722 5470 2.681778 AGCCCCACGACTCCTGAG 60.682 66.667 0.00 0.00 0.00 3.35
4772 5520 1.445871 CGAAACCTAACCCCCTTTCG 58.554 55.000 0.00 0.00 39.11 3.46
4815 5563 3.312736 AGAGGGAATGACTCTCCTCTC 57.687 52.381 5.03 1.92 46.61 3.20
4856 5604 5.720202 AGTGAATGTGTTACGAGCTCATTA 58.280 37.500 15.40 0.82 32.42 1.90
4860 5608 2.167693 TGTGTTACGAGCTCATTAGGGG 59.832 50.000 15.40 0.00 0.00 4.79
4875 5623 9.043548 GCTCATTAGGGGTATTTATAACCTAGA 57.956 37.037 3.95 0.00 40.09 2.43
4900 5648 4.682860 GTGATTGACAAATGAACAAGGCTG 59.317 41.667 0.00 0.00 0.00 4.85
4948 5696 8.832735 AGGGTAAAACTATCTTTAGTCCATGAA 58.167 33.333 0.00 0.00 37.70 2.57
4962 5710 2.437651 TCCATGAATCGTGCTCCCATTA 59.562 45.455 0.00 0.00 0.00 1.90
5018 5766 9.232473 GTAGAATTCCTTTGACTTTATGAAGGT 57.768 33.333 0.65 0.00 39.67 3.50
5054 5802 2.233271 TGAGCTTCTTTGCTTCCTTGG 58.767 47.619 0.00 0.00 44.17 3.61
5057 5805 1.342496 GCTTCTTTGCTTCCTTGGCTT 59.658 47.619 0.00 0.00 0.00 4.35
5064 5812 2.440409 TGCTTCCTTGGCTTCATCTTC 58.560 47.619 0.00 0.00 0.00 2.87
5085 5833 8.084590 TCTTCGACTTGGTCTTTTATTTTCTC 57.915 34.615 0.00 0.00 0.00 2.87
5088 5836 8.391075 TCGACTTGGTCTTTTATTTTCTCATT 57.609 30.769 0.00 0.00 0.00 2.57
5121 5869 4.638421 TCGTTGACCATGAAGACTTGTTTT 59.362 37.500 0.00 0.00 0.00 2.43
5122 5870 4.734854 CGTTGACCATGAAGACTTGTTTTG 59.265 41.667 0.00 0.00 0.00 2.44
5165 5916 1.826385 CTTGGACCCTTGGTAGCTTG 58.174 55.000 0.00 0.00 35.25 4.01
5169 5920 1.168714 GACCCTTGGTAGCTTGCTTG 58.831 55.000 0.00 0.00 35.25 4.01
5182 5933 5.629079 AGCTTGCTTGGACTTATGTTAAC 57.371 39.130 0.00 0.00 0.00 2.01
5183 5934 4.459337 AGCTTGCTTGGACTTATGTTAACC 59.541 41.667 2.48 0.00 0.00 2.85
5184 5935 4.459337 GCTTGCTTGGACTTATGTTAACCT 59.541 41.667 2.48 0.00 0.00 3.50
5185 5936 5.392057 GCTTGCTTGGACTTATGTTAACCTC 60.392 44.000 2.48 0.00 0.00 3.85
5186 5937 5.499004 TGCTTGGACTTATGTTAACCTCT 57.501 39.130 2.48 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.302752 AAGAGTTGCCGCATGCTCA 60.303 52.632 17.13 10.71 42.00 4.26
76 77 1.556911 TCCTTGGAGCTCCATGAGAAC 59.443 52.381 37.67 12.01 46.97 3.01
78 79 2.187239 ATCCTTGGAGCTCCATGAGA 57.813 50.000 37.67 31.77 46.97 3.27
96 97 4.689062 TGTAGGTTTGAGGAGAGAGGAAT 58.311 43.478 0.00 0.00 0.00 3.01
169 172 3.368571 GGTTGCTGTCTGCTGCCC 61.369 66.667 0.00 0.00 43.37 5.36
171 174 1.737355 TTTGGGTTGCTGTCTGCTGC 61.737 55.000 3.20 0.00 43.37 5.25
196 199 4.060205 GCCAAATATGTGATTGATTGCCC 58.940 43.478 0.00 0.00 0.00 5.36
219 227 6.640907 CCGGTTATTTGGTCTTTCTTTTTCAG 59.359 38.462 0.00 0.00 0.00 3.02
223 231 5.361571 ACACCGGTTATTTGGTCTTTCTTTT 59.638 36.000 2.97 0.00 35.96 2.27
227 235 4.037089 ACAACACCGGTTATTTGGTCTTTC 59.963 41.667 19.57 0.00 35.96 2.62
243 251 0.033366 GCAACCCCAATGACAACACC 59.967 55.000 0.00 0.00 0.00 4.16
260 268 3.673484 GCTTCTGCTTTGCGGGCA 61.673 61.111 0.00 0.00 35.34 5.36
267 275 2.740981 CGAGATGAGTTGCTTCTGCTTT 59.259 45.455 0.00 0.00 40.48 3.51
273 281 0.723981 GTGCCGAGATGAGTTGCTTC 59.276 55.000 0.00 0.00 0.00 3.86
279 287 0.610174 ATGTGTGTGCCGAGATGAGT 59.390 50.000 0.00 0.00 0.00 3.41
289 297 0.166597 CGTGATGGACATGTGTGTGC 59.833 55.000 1.15 0.00 45.82 4.57
295 303 0.320334 TGCGTTCGTGATGGACATGT 60.320 50.000 0.00 0.00 36.90 3.21
300 308 0.032815 TCACTTGCGTTCGTGATGGA 59.967 50.000 0.00 0.00 35.40 3.41
302 310 1.388093 CTCTCACTTGCGTTCGTGATG 59.612 52.381 3.89 0.74 39.23 3.07
303 311 1.670087 CCTCTCACTTGCGTTCGTGAT 60.670 52.381 3.89 0.00 39.23 3.06
304 312 0.318699 CCTCTCACTTGCGTTCGTGA 60.319 55.000 0.00 0.00 37.79 4.35
312 320 2.266554 CGAGACAATCCTCTCACTTGC 58.733 52.381 0.00 0.00 37.16 4.01
314 322 2.175202 AGCGAGACAATCCTCTCACTT 58.825 47.619 0.00 0.00 37.16 3.16
327 335 1.598430 GCTCTCGGACAATAGCGAGAC 60.598 57.143 0.00 0.00 34.29 3.36
333 341 2.093973 ACAACCAGCTCTCGGACAATAG 60.094 50.000 0.00 0.00 0.00 1.73
335 343 0.687354 ACAACCAGCTCTCGGACAAT 59.313 50.000 0.00 0.00 0.00 2.71
340 348 0.108615 ATTCGACAACCAGCTCTCGG 60.109 55.000 0.00 0.00 0.00 4.63
341 349 0.994995 CATTCGACAACCAGCTCTCG 59.005 55.000 0.00 0.00 0.00 4.04
343 351 2.086054 GTCATTCGACAACCAGCTCT 57.914 50.000 0.00 0.00 42.13 4.09
359 367 3.498397 GTCTCGCCTTTGATTTCTTGTCA 59.502 43.478 0.00 0.00 0.00 3.58
360 368 3.498397 TGTCTCGCCTTTGATTTCTTGTC 59.502 43.478 0.00 0.00 0.00 3.18
367 375 3.157087 ACCATTTGTCTCGCCTTTGATT 58.843 40.909 0.00 0.00 0.00 2.57
371 379 3.695830 TCTACCATTTGTCTCGCCTTT 57.304 42.857 0.00 0.00 0.00 3.11
400 408 6.764379 TCCTTATATATGTTGCGAACCATCA 58.236 36.000 0.00 0.00 0.00 3.07
433 441 4.638865 ACAACGTTACTTGCCTCTTCTTTT 59.361 37.500 0.00 0.00 0.00 2.27
452 460 5.391467 ACCGTATCTGGTATGTGCAACAAC 61.391 45.833 0.00 0.00 42.74 3.32
454 462 2.235155 ACCGTATCTGGTATGTGCAACA 59.765 45.455 0.00 0.00 43.30 3.33
456 464 3.620427 AACCGTATCTGGTATGTGCAA 57.380 42.857 0.00 0.00 42.89 4.08
462 470 3.067180 CACACCGTAACCGTATCTGGTAT 59.933 47.826 0.00 0.00 42.89 2.73
466 474 2.925578 TCACACCGTAACCGTATCTG 57.074 50.000 0.00 0.00 0.00 2.90
468 476 3.432782 CTCTTCACACCGTAACCGTATC 58.567 50.000 0.00 0.00 0.00 2.24
469 477 2.416431 GCTCTTCACACCGTAACCGTAT 60.416 50.000 0.00 0.00 0.00 3.06
473 481 1.623973 GCGCTCTTCACACCGTAACC 61.624 60.000 0.00 0.00 0.00 2.85
509 518 2.278596 CCGTCGGCGACACCATAG 60.279 66.667 35.62 19.93 41.33 2.23
524 533 1.472480 CCAGCATCCAACCTAAAACCG 59.528 52.381 0.00 0.00 0.00 4.44
535 544 1.554617 TCAATCGTCTTCCAGCATCCA 59.445 47.619 0.00 0.00 0.00 3.41
557 566 4.982295 CCTATCATTAATCTTGCGACACGA 59.018 41.667 0.00 0.00 0.00 4.35
562 571 7.216494 TGTTCATCCTATCATTAATCTTGCGA 58.784 34.615 0.00 0.00 0.00 5.10
563 572 7.425577 TGTTCATCCTATCATTAATCTTGCG 57.574 36.000 0.00 0.00 0.00 4.85
577 586 1.565759 AGGCCAGCAATGTTCATCCTA 59.434 47.619 5.01 0.00 0.00 2.94
592 601 0.630673 AAAGCATGTATGGGAGGCCA 59.369 50.000 5.01 0.00 0.00 5.36
599 608 2.620251 TCGAGGGAAAGCATGTATGG 57.380 50.000 0.00 0.00 0.00 2.74
600 609 3.185188 CGAATCGAGGGAAAGCATGTATG 59.815 47.826 0.00 0.00 0.00 2.39
632 641 6.664515 TCGCTAGTTGAGTTAAAAATTGTGG 58.335 36.000 0.00 0.00 0.00 4.17
642 651 3.682696 TGTCCTCTCGCTAGTTGAGTTA 58.317 45.455 12.11 0.00 34.99 2.24
646 655 1.135139 GCATGTCCTCTCGCTAGTTGA 59.865 52.381 0.00 0.00 0.00 3.18
648 657 1.135915 CTGCATGTCCTCTCGCTAGTT 59.864 52.381 0.00 0.00 0.00 2.24
670 679 7.178274 TGTCTAAAATGAAAATGGCCATGTAGT 59.822 33.333 21.63 0.00 0.00 2.73
672 681 7.473735 TGTCTAAAATGAAAATGGCCATGTA 57.526 32.000 21.63 6.46 0.00 2.29
673 682 6.357579 TGTCTAAAATGAAAATGGCCATGT 57.642 33.333 21.63 11.96 0.00 3.21
739 1060 3.659735 CGAACGTCTACATTTGTCATGC 58.340 45.455 0.00 0.00 0.00 4.06
740 1061 3.367932 AGCGAACGTCTACATTTGTCATG 59.632 43.478 0.00 0.00 0.00 3.07
783 1104 2.604011 CGCATAAACATGGGCAAATGTG 59.396 45.455 5.89 0.00 39.89 3.21
784 1105 2.233431 ACGCATAAACATGGGCAAATGT 59.767 40.909 0.00 0.00 42.62 2.71
785 1106 2.891112 ACGCATAAACATGGGCAAATG 58.109 42.857 0.00 0.00 37.94 2.32
786 1107 4.935352 ATACGCATAAACATGGGCAAAT 57.065 36.364 0.00 0.00 37.94 2.32
789 1110 3.282885 TCAATACGCATAAACATGGGCA 58.717 40.909 0.00 0.00 37.94 5.36
790 1111 3.980646 TCAATACGCATAAACATGGGC 57.019 42.857 0.00 0.00 37.94 5.36
791 1112 4.278858 CGTTCAATACGCATAAACATGGG 58.721 43.478 0.00 0.65 44.26 4.00
842 1168 1.753073 GGAAGAGACGGGGTTTCGATA 59.247 52.381 0.00 0.00 0.00 2.92
846 1172 1.079336 CGGGAAGAGACGGGGTTTC 60.079 63.158 0.00 0.00 0.00 2.78
1122 1448 2.899900 GGATGGGGAAGAAAAAGCAACT 59.100 45.455 0.00 0.00 0.00 3.16
1128 1454 0.613572 GGGCGGATGGGGAAGAAAAA 60.614 55.000 0.00 0.00 0.00 1.94
1275 1604 4.778415 CGCGACGAGGAGGTGGTG 62.778 72.222 0.00 0.00 0.00 4.17
1479 1995 0.391661 ATCATGCGGACACGAAAGCT 60.392 50.000 0.00 0.00 44.60 3.74
1481 1997 1.731709 TCAATCATGCGGACACGAAAG 59.268 47.619 0.00 0.00 44.60 2.62
1490 2006 4.944962 TTCTACTTGTTCAATCATGCGG 57.055 40.909 0.00 0.00 0.00 5.69
1516 2035 5.460646 CACAGTTAACAGGCCAACAATTAG 58.539 41.667 5.01 0.00 0.00 1.73
1522 2041 0.958822 CCCACAGTTAACAGGCCAAC 59.041 55.000 5.01 0.00 0.00 3.77
1534 2053 1.352352 CTTGATCCAGGAACCCACAGT 59.648 52.381 0.00 0.00 0.00 3.55
1568 2087 9.451002 TCAATCTGTAAACCCGAACATAAATAA 57.549 29.630 0.00 0.00 0.00 1.40
1569 2088 9.451002 TTCAATCTGTAAACCCGAACATAAATA 57.549 29.630 0.00 0.00 0.00 1.40
1570 2089 7.931578 TCAATCTGTAAACCCGAACATAAAT 57.068 32.000 0.00 0.00 0.00 1.40
1571 2090 7.747155 TTCAATCTGTAAACCCGAACATAAA 57.253 32.000 0.00 0.00 0.00 1.40
1572 2091 7.228906 TGTTTCAATCTGTAAACCCGAACATAA 59.771 33.333 0.00 0.00 35.23 1.90
1573 2092 6.711194 TGTTTCAATCTGTAAACCCGAACATA 59.289 34.615 0.00 0.00 35.23 2.29
1574 2093 5.533154 TGTTTCAATCTGTAAACCCGAACAT 59.467 36.000 0.00 0.00 35.23 2.71
1575 2094 4.882427 TGTTTCAATCTGTAAACCCGAACA 59.118 37.500 0.00 0.00 35.23 3.18
1576 2095 5.427036 TGTTTCAATCTGTAAACCCGAAC 57.573 39.130 0.00 0.00 35.23 3.95
1577 2096 6.452494 TTTGTTTCAATCTGTAAACCCGAA 57.548 33.333 0.00 0.00 35.23 4.30
1578 2097 6.452494 TTTTGTTTCAATCTGTAAACCCGA 57.548 33.333 0.00 0.00 35.23 5.14
1579 2098 7.707774 AATTTTGTTTCAATCTGTAAACCCG 57.292 32.000 0.00 0.00 35.23 5.28
1612 2131 9.702494 GAATTCTTGTTTCAATCCTTCTCAAAT 57.298 29.630 0.00 0.00 0.00 2.32
1613 2132 8.143835 GGAATTCTTGTTTCAATCCTTCTCAAA 58.856 33.333 5.23 0.00 0.00 2.69
1614 2133 7.287466 TGGAATTCTTGTTTCAATCCTTCTCAA 59.713 33.333 5.23 0.00 0.00 3.02
1615 2134 6.777091 TGGAATTCTTGTTTCAATCCTTCTCA 59.223 34.615 5.23 0.00 0.00 3.27
1616 2135 7.219484 TGGAATTCTTGTTTCAATCCTTCTC 57.781 36.000 5.23 0.00 0.00 2.87
1617 2136 7.787623 ATGGAATTCTTGTTTCAATCCTTCT 57.212 32.000 5.23 0.00 0.00 2.85
1618 2137 9.927668 TTAATGGAATTCTTGTTTCAATCCTTC 57.072 29.630 5.23 0.00 37.87 3.46
1638 2157 7.815068 AGCTAGCTATCGTTACTGAATTAATGG 59.185 37.037 17.69 0.00 0.00 3.16
1647 2166 6.252441 GCATATTGAGCTAGCTATCGTTACTG 59.748 42.308 19.38 9.09 0.00 2.74
1657 2177 3.692257 ATTCGGCATATTGAGCTAGCT 57.308 42.857 19.45 19.45 0.00 3.32
1658 2178 3.999663 AGAATTCGGCATATTGAGCTAGC 59.000 43.478 6.62 6.62 0.00 3.42
1659 2179 4.993584 ACAGAATTCGGCATATTGAGCTAG 59.006 41.667 5.43 0.00 0.00 3.42
1699 2305 7.416964 AAAATGGATATCATTGAAACGGGAA 57.583 32.000 4.83 0.00 44.68 3.97
1700 2306 8.526667 TTAAAATGGATATCATTGAAACGGGA 57.473 30.769 4.83 0.00 44.68 5.14
1701 2307 9.195411 CATTAAAATGGATATCATTGAAACGGG 57.805 33.333 4.83 0.00 44.68 5.28
1702 2308 8.702438 GCATTAAAATGGATATCATTGAAACGG 58.298 33.333 4.83 0.00 44.68 4.44
1703 2309 9.467258 AGCATTAAAATGGATATCATTGAAACG 57.533 29.630 4.83 0.00 44.68 3.60
1707 2313 9.246670 CCCTAGCATTAAAATGGATATCATTGA 57.753 33.333 4.83 0.00 44.68 2.57
1708 2314 9.246670 TCCCTAGCATTAAAATGGATATCATTG 57.753 33.333 4.83 0.00 44.68 2.82
1710 2316 8.618385 ACTCCCTAGCATTAAAATGGATATCAT 58.382 33.333 4.83 0.00 36.90 2.45
1711 2317 7.988937 ACTCCCTAGCATTAAAATGGATATCA 58.011 34.615 4.83 0.00 36.90 2.15
1712 2318 9.606631 CTACTCCCTAGCATTAAAATGGATATC 57.393 37.037 4.93 0.00 36.90 1.63
1713 2319 8.552296 CCTACTCCCTAGCATTAAAATGGATAT 58.448 37.037 4.93 0.00 36.90 1.63
1714 2320 7.037586 CCCTACTCCCTAGCATTAAAATGGATA 60.038 40.741 4.93 0.00 36.90 2.59
1715 2321 6.240292 CCCTACTCCCTAGCATTAAAATGGAT 60.240 42.308 4.93 0.00 36.90 3.41
1716 2322 5.073144 CCCTACTCCCTAGCATTAAAATGGA 59.927 44.000 4.93 0.00 36.90 3.41
1717 2323 5.073144 TCCCTACTCCCTAGCATTAAAATGG 59.927 44.000 4.93 0.00 36.90 3.16
1718 2324 5.998363 GTCCCTACTCCCTAGCATTAAAATG 59.002 44.000 0.00 0.00 39.40 2.32
1719 2325 5.670361 TGTCCCTACTCCCTAGCATTAAAAT 59.330 40.000 0.00 0.00 0.00 1.82
1720 2326 5.034200 TGTCCCTACTCCCTAGCATTAAAA 58.966 41.667 0.00 0.00 0.00 1.52
1721 2327 4.407945 GTGTCCCTACTCCCTAGCATTAAA 59.592 45.833 0.00 0.00 0.00 1.52
1722 2328 3.965347 GTGTCCCTACTCCCTAGCATTAA 59.035 47.826 0.00 0.00 0.00 1.40
1723 2329 3.573695 GTGTCCCTACTCCCTAGCATTA 58.426 50.000 0.00 0.00 0.00 1.90
1724 2330 2.399580 GTGTCCCTACTCCCTAGCATT 58.600 52.381 0.00 0.00 0.00 3.56
1725 2331 1.413227 GGTGTCCCTACTCCCTAGCAT 60.413 57.143 0.00 0.00 33.88 3.79
1726 2332 0.032416 GGTGTCCCTACTCCCTAGCA 60.032 60.000 0.00 0.00 33.88 3.49
1727 2333 2.823587 GGTGTCCCTACTCCCTAGC 58.176 63.158 0.00 0.00 33.88 3.42
1732 2338 1.880941 AATCTGGGTGTCCCTACTCC 58.119 55.000 6.38 0.00 45.70 3.85
1733 2339 4.031611 ACTTAATCTGGGTGTCCCTACTC 58.968 47.826 6.38 0.00 45.70 2.59
1734 2340 3.775316 CACTTAATCTGGGTGTCCCTACT 59.225 47.826 6.38 0.00 45.70 2.57
1735 2341 3.773119 TCACTTAATCTGGGTGTCCCTAC 59.227 47.826 6.38 0.00 45.70 3.18
1736 2342 4.069312 TCACTTAATCTGGGTGTCCCTA 57.931 45.455 6.38 0.00 45.70 3.53
1737 2343 2.915869 TCACTTAATCTGGGTGTCCCT 58.084 47.619 6.38 0.00 45.70 4.20
1738 2344 3.009143 AGTTCACTTAATCTGGGTGTCCC 59.991 47.826 0.00 0.00 45.71 4.46
1739 2345 4.020128 AGAGTTCACTTAATCTGGGTGTCC 60.020 45.833 0.00 0.00 33.30 4.02
1740 2346 5.153950 AGAGTTCACTTAATCTGGGTGTC 57.846 43.478 0.00 0.00 33.30 3.67
1741 2347 5.568620 AAGAGTTCACTTAATCTGGGTGT 57.431 39.130 0.00 0.00 33.30 4.16
1742 2348 6.148480 CAGAAAGAGTTCACTTAATCTGGGTG 59.852 42.308 0.00 0.00 34.13 4.61
1743 2349 6.043243 TCAGAAAGAGTTCACTTAATCTGGGT 59.957 38.462 12.87 0.00 36.35 4.51
1744 2350 6.467677 TCAGAAAGAGTTCACTTAATCTGGG 58.532 40.000 12.87 0.00 36.35 4.45
1745 2351 7.969536 TTCAGAAAGAGTTCACTTAATCTGG 57.030 36.000 12.87 0.00 36.35 3.86
1755 2361 9.973661 TGGGAAATATATTTCAGAAAGAGTTCA 57.026 29.630 30.09 14.11 46.03 3.18
1757 2363 9.981460 ACTGGGAAATATATTTCAGAAAGAGTT 57.019 29.630 30.09 8.50 46.03 3.01
1762 2368 9.967451 TGTGTACTGGGAAATATATTTCAGAAA 57.033 29.630 30.09 16.17 46.03 2.52
1767 2373 9.965824 CCAAATGTGTACTGGGAAATATATTTC 57.034 33.333 24.27 24.27 44.08 2.17
1768 2374 9.487442 ACCAAATGTGTACTGGGAAATATATTT 57.513 29.630 10.51 10.51 34.31 1.40
1769 2375 8.912988 CACCAAATGTGTACTGGGAAATATATT 58.087 33.333 3.41 0.00 40.26 1.28
1770 2376 8.463930 CACCAAATGTGTACTGGGAAATATAT 57.536 34.615 3.41 0.00 40.26 0.86
1771 2377 7.873719 CACCAAATGTGTACTGGGAAATATA 57.126 36.000 3.41 0.00 40.26 0.86
1772 2378 6.773976 CACCAAATGTGTACTGGGAAATAT 57.226 37.500 3.41 0.00 40.26 1.28
1786 2392 5.398603 TTCAACAACAGAACACCAAATGT 57.601 34.783 0.00 0.00 46.42 2.71
1787 2393 5.276963 GCATTCAACAACAGAACACCAAATG 60.277 40.000 0.00 0.00 0.00 2.32
1788 2394 4.810491 GCATTCAACAACAGAACACCAAAT 59.190 37.500 0.00 0.00 0.00 2.32
1789 2395 4.180057 GCATTCAACAACAGAACACCAAA 58.820 39.130 0.00 0.00 0.00 3.28
1790 2396 3.194329 TGCATTCAACAACAGAACACCAA 59.806 39.130 0.00 0.00 0.00 3.67
1791 2397 2.757314 TGCATTCAACAACAGAACACCA 59.243 40.909 0.00 0.00 0.00 4.17
1792 2398 3.435105 TGCATTCAACAACAGAACACC 57.565 42.857 0.00 0.00 0.00 4.16
1793 2399 3.665409 CGATGCATTCAACAACAGAACAC 59.335 43.478 0.00 0.00 0.00 3.32
1794 2400 3.563390 TCGATGCATTCAACAACAGAACA 59.437 39.130 0.00 0.00 0.00 3.18
1795 2401 4.145876 TCGATGCATTCAACAACAGAAC 57.854 40.909 0.00 0.00 0.00 3.01
1796 2402 4.827304 TTCGATGCATTCAACAACAGAA 57.173 36.364 0.00 0.00 0.00 3.02
1797 2403 4.514816 TCTTTCGATGCATTCAACAACAGA 59.485 37.500 0.00 0.00 0.00 3.41
1798 2404 4.786507 TCTTTCGATGCATTCAACAACAG 58.213 39.130 0.00 0.00 0.00 3.16
1799 2405 4.827304 TCTTTCGATGCATTCAACAACA 57.173 36.364 0.00 0.00 0.00 3.33
1800 2406 5.215160 ACTTCTTTCGATGCATTCAACAAC 58.785 37.500 0.00 0.00 0.00 3.32
1801 2407 5.008514 TGACTTCTTTCGATGCATTCAACAA 59.991 36.000 0.00 0.00 0.00 2.83
1802 2408 4.514816 TGACTTCTTTCGATGCATTCAACA 59.485 37.500 0.00 0.00 0.00 3.33
1803 2409 4.848299 GTGACTTCTTTCGATGCATTCAAC 59.152 41.667 0.00 0.00 0.00 3.18
1804 2410 4.756642 AGTGACTTCTTTCGATGCATTCAA 59.243 37.500 0.00 0.00 0.00 2.69
1805 2411 4.152938 CAGTGACTTCTTTCGATGCATTCA 59.847 41.667 0.00 0.00 0.00 2.57
1806 2412 4.389992 TCAGTGACTTCTTTCGATGCATTC 59.610 41.667 0.00 0.00 0.00 2.67
1807 2413 4.318332 TCAGTGACTTCTTTCGATGCATT 58.682 39.130 0.00 0.00 0.00 3.56
1808 2414 3.930336 TCAGTGACTTCTTTCGATGCAT 58.070 40.909 0.00 0.00 0.00 3.96
1809 2415 3.385193 TCAGTGACTTCTTTCGATGCA 57.615 42.857 0.00 0.00 0.00 3.96
1810 2416 4.935885 ATTCAGTGACTTCTTTCGATGC 57.064 40.909 0.00 0.00 0.00 3.91
1813 2419 9.653287 ACAATATTATTCAGTGACTTCTTTCGA 57.347 29.630 0.00 0.00 0.00 3.71
1814 2420 9.694520 CACAATATTATTCAGTGACTTCTTTCG 57.305 33.333 0.00 0.00 32.14 3.46
1821 2427 9.719355 TGTTGTACACAATATTATTCAGTGACT 57.281 29.630 11.70 0.00 38.24 3.41
1838 2444 9.595357 GCTTTCTAAGTTCTAATTGTTGTACAC 57.405 33.333 0.00 0.00 0.00 2.90
1839 2445 9.332502 TGCTTTCTAAGTTCTAATTGTTGTACA 57.667 29.630 0.00 0.00 0.00 2.90
1851 2457 9.521503 GAAAACAGATTTTGCTTTCTAAGTTCT 57.478 29.630 0.00 0.00 38.34 3.01
1852 2458 9.521503 AGAAAACAGATTTTGCTTTCTAAGTTC 57.478 29.630 4.31 0.00 45.63 3.01
1853 2459 9.875691 AAGAAAACAGATTTTGCTTTCTAAGTT 57.124 25.926 6.14 0.00 46.34 2.66
1854 2460 9.305925 CAAGAAAACAGATTTTGCTTTCTAAGT 57.694 29.630 6.14 0.00 46.34 2.24
1855 2461 8.271487 GCAAGAAAACAGATTTTGCTTTCTAAG 58.729 33.333 6.14 4.51 46.34 2.18
1856 2462 7.224557 GGCAAGAAAACAGATTTTGCTTTCTAA 59.775 33.333 6.14 0.00 46.34 2.10
1857 2463 6.701400 GGCAAGAAAACAGATTTTGCTTTCTA 59.299 34.615 6.14 0.00 46.34 2.10
1859 2465 5.294060 TGGCAAGAAAACAGATTTTGCTTTC 59.706 36.000 7.34 0.00 40.54 2.62
1860 2466 5.184711 TGGCAAGAAAACAGATTTTGCTTT 58.815 33.333 7.34 0.00 38.17 3.51
1861 2467 4.768583 TGGCAAGAAAACAGATTTTGCTT 58.231 34.783 7.34 0.00 38.17 3.91
1862 2468 4.405116 TGGCAAGAAAACAGATTTTGCT 57.595 36.364 7.34 0.00 38.17 3.91
1863 2469 4.083696 CCATGGCAAGAAAACAGATTTTGC 60.084 41.667 0.00 0.00 38.17 3.68
1864 2470 4.083696 GCCATGGCAAGAAAACAGATTTTG 60.084 41.667 32.08 0.00 38.38 2.44
1865 2471 4.067192 GCCATGGCAAGAAAACAGATTTT 58.933 39.130 32.08 0.00 39.76 1.82
1866 2472 3.667360 GCCATGGCAAGAAAACAGATTT 58.333 40.909 32.08 0.00 41.49 2.17
1867 2473 3.323751 GCCATGGCAAGAAAACAGATT 57.676 42.857 32.08 0.00 41.49 2.40
1881 2487 3.530260 GGAATGCCGGTGCCATGG 61.530 66.667 7.63 7.63 36.33 3.66
1882 2488 2.053865 AAGGAATGCCGGTGCCATG 61.054 57.895 1.90 0.00 39.96 3.66
1883 2489 2.053865 CAAGGAATGCCGGTGCCAT 61.054 57.895 1.90 0.00 39.96 4.40
1884 2490 2.676121 CAAGGAATGCCGGTGCCA 60.676 61.111 1.90 0.00 39.96 4.92
1885 2491 1.815817 AAACAAGGAATGCCGGTGCC 61.816 55.000 1.90 0.00 39.96 5.01
1886 2492 0.388520 GAAACAAGGAATGCCGGTGC 60.389 55.000 1.90 0.00 39.96 5.01
1887 2493 0.958091 TGAAACAAGGAATGCCGGTG 59.042 50.000 1.90 0.00 39.96 4.94
1888 2494 1.247567 CTGAAACAAGGAATGCCGGT 58.752 50.000 1.90 0.00 39.96 5.28
1889 2495 1.200020 GACTGAAACAAGGAATGCCGG 59.800 52.381 0.00 0.00 39.96 6.13
1890 2496 1.879380 TGACTGAAACAAGGAATGCCG 59.121 47.619 0.00 0.00 39.96 5.69
1891 2497 2.622942 TGTGACTGAAACAAGGAATGCC 59.377 45.455 0.00 0.00 0.00 4.40
1900 2506 6.874664 TGTGTAACTTTAGTGTGACTGAAACA 59.125 34.615 0.00 0.00 38.04 2.83
1916 2524 8.565416 GCCTGAGTTTAATAGTTTGTGTAACTT 58.435 33.333 0.00 0.00 44.73 2.66
1976 2588 8.356657 CAATGGAAAGTATGAACCAAACAGTAA 58.643 33.333 0.00 0.00 36.00 2.24
2141 2754 3.181423 ACCTTACAGGGAAATGGAGCAAA 60.181 43.478 0.00 0.00 40.58 3.68
2143 2756 1.992557 ACCTTACAGGGAAATGGAGCA 59.007 47.619 0.00 0.00 40.58 4.26
2255 2868 8.017418 ACAACAAGAATTCAAAATCCCTGTTA 57.983 30.769 8.44 0.00 0.00 2.41
2283 2896 1.141665 CGTCCATCTGCCGTCATGA 59.858 57.895 0.00 0.00 0.00 3.07
2300 2913 0.026285 CGGCTGAAATAACTTCCGCG 59.974 55.000 0.00 0.00 43.23 6.46
2438 3051 5.041287 TCATCATCCAATACGTCGACTTTC 58.959 41.667 14.70 0.00 0.00 2.62
2441 3054 4.649088 TTCATCATCCAATACGTCGACT 57.351 40.909 14.70 3.37 0.00 4.18
2540 3153 4.017126 ACTGAAGGTGTCTCATCGTATCA 58.983 43.478 0.00 0.00 0.00 2.15
2675 3288 8.934023 ATGAATGAGGAAACAAGTACCTAAAA 57.066 30.769 0.00 0.00 33.89 1.52
2699 3312 5.233083 ACCATTGATCGACATGGTCATAT 57.767 39.130 16.55 0.00 43.31 1.78
2792 3405 3.046390 CTCGTTTAGCTCATCATCGGAC 58.954 50.000 0.00 0.00 0.00 4.79
3014 3627 2.025887 CCTACCTGGCACTTCCTTCAAT 60.026 50.000 0.00 0.00 35.26 2.57
3221 3834 1.289231 AGTAGATGGCTCACCTCTCCA 59.711 52.381 0.00 0.00 36.63 3.86
3260 3873 5.230942 ACGATTCAGTGTACTTCAAAGGAG 58.769 41.667 0.00 0.00 0.00 3.69
3275 3888 6.017687 TGCATTGATAAATCCAGACGATTCAG 60.018 38.462 0.00 0.00 40.47 3.02
3297 3910 3.410631 TTTGAAAGATACCCGAGTGCA 57.589 42.857 0.00 0.00 0.00 4.57
3404 4026 6.718454 CCTCATATGCTGGATGAAATTTAGGT 59.282 38.462 8.37 0.00 33.01 3.08
3959 4700 6.588204 ACAACTGTGTTAGGATAACTTGTCA 58.412 36.000 1.76 0.00 32.58 3.58
3981 4722 5.164233 CAGAAGAGCGACTTTGAGAATACA 58.836 41.667 0.00 0.00 39.13 2.29
3998 4739 0.250467 GAAGCTGTGTGCCCAGAAGA 60.250 55.000 0.00 0.00 44.23 2.87
4033 4774 6.664816 TCAATTCAACCTGATAAGCCAGAAAT 59.335 34.615 0.00 0.00 36.29 2.17
4063 4804 0.622665 CATCCCTGTCCTCCAAGCTT 59.377 55.000 0.00 0.00 0.00 3.74
4112 4853 1.900585 GCGCTGTCGATTGTCTGCAA 61.901 55.000 0.00 0.00 38.10 4.08
4233 4975 5.347342 CAACATCAAAACTACAAGTTGGCA 58.653 37.500 7.96 0.00 38.66 4.92
4262 5004 7.064966 TGCTGTTAATCACATCTCAATGTAGTG 59.935 37.037 0.00 0.00 44.41 2.74
4306 5048 5.321927 TCTATAGCTCCACATACAATCGGA 58.678 41.667 0.00 0.00 0.00 4.55
4308 5050 5.098893 GCTCTATAGCTCCACATACAATCG 58.901 45.833 0.00 0.00 45.85 3.34
4359 5101 1.825090 CCAGCTTCTGGCACAATGTA 58.175 50.000 0.00 0.00 45.13 2.29
4377 5119 1.305219 TATTGCGAAGTGCCACAGCC 61.305 55.000 0.00 0.00 45.60 4.85
4379 5121 4.818534 AATATATTGCGAAGTGCCACAG 57.181 40.909 0.00 0.00 45.60 3.66
4497 5243 7.330946 GTCATACACTGCTACTTACATTTCACA 59.669 37.037 0.00 0.00 0.00 3.58
4519 5265 6.479972 TGACCTTCATTATAAGACCGTCAT 57.520 37.500 0.40 0.00 0.00 3.06
4526 5272 6.704493 GCCGTACAATGACCTTCATTATAAGA 59.296 38.462 1.14 0.00 44.60 2.10
4534 5280 0.981183 AGGCCGTACAATGACCTTCA 59.019 50.000 0.00 0.00 0.00 3.02
4535 5281 2.109425 AAGGCCGTACAATGACCTTC 57.891 50.000 0.00 0.00 35.89 3.46
4536 5282 3.926058 ATAAGGCCGTACAATGACCTT 57.074 42.857 0.00 0.00 43.10 3.50
4537 5283 4.700700 GTTATAAGGCCGTACAATGACCT 58.299 43.478 0.00 0.00 0.00 3.85
4538 5284 3.492011 CGTTATAAGGCCGTACAATGACC 59.508 47.826 3.07 0.00 0.00 4.02
4539 5285 4.362279 TCGTTATAAGGCCGTACAATGAC 58.638 43.478 7.45 0.00 0.00 3.06
4540 5286 4.652421 TCGTTATAAGGCCGTACAATGA 57.348 40.909 7.45 7.45 0.00 2.57
4541 5287 4.210537 CCTTCGTTATAAGGCCGTACAATG 59.789 45.833 0.00 1.04 39.69 2.82
4542 5288 4.374399 CCTTCGTTATAAGGCCGTACAAT 58.626 43.478 0.00 0.00 39.69 2.71
4543 5289 3.784338 CCTTCGTTATAAGGCCGTACAA 58.216 45.455 0.00 0.00 39.69 2.41
4544 5290 3.441496 CCTTCGTTATAAGGCCGTACA 57.559 47.619 0.00 0.00 39.69 2.90
4552 5298 9.454585 TCGATGTACAATTACCTTCGTTATAAG 57.545 33.333 0.00 0.00 35.70 1.73
4553 5299 9.236691 GTCGATGTACAATTACCTTCGTTATAA 57.763 33.333 0.00 0.00 35.70 0.98
4554 5300 8.404765 TGTCGATGTACAATTACCTTCGTTATA 58.595 33.333 0.00 0.00 35.70 0.98
4555 5301 7.259882 TGTCGATGTACAATTACCTTCGTTAT 58.740 34.615 0.00 0.00 35.70 1.89
4556 5302 6.619744 TGTCGATGTACAATTACCTTCGTTA 58.380 36.000 0.00 0.00 35.70 3.18
4609 5355 3.052082 CCCACAAGGCGACTGCAG 61.052 66.667 13.48 13.48 45.35 4.41
4649 5397 2.800250 AGCCCTTTTCCTTGATGACTG 58.200 47.619 0.00 0.00 0.00 3.51
4650 5398 3.160269 CAAGCCCTTTTCCTTGATGACT 58.840 45.455 0.00 0.00 40.59 3.41
4654 5402 2.893489 GTGTCAAGCCCTTTTCCTTGAT 59.107 45.455 6.38 0.00 46.24 2.57
4655 5403 2.306847 GTGTCAAGCCCTTTTCCTTGA 58.693 47.619 0.00 0.00 43.60 3.02
4656 5404 2.031120 TGTGTCAAGCCCTTTTCCTTG 58.969 47.619 0.00 0.00 39.74 3.61
4657 5405 2.031870 GTGTGTCAAGCCCTTTTCCTT 58.968 47.619 0.00 0.00 0.00 3.36
4658 5406 1.215423 AGTGTGTCAAGCCCTTTTCCT 59.785 47.619 0.00 0.00 0.00 3.36
4704 5452 2.997315 TCAGGAGTCGTGGGGCTG 60.997 66.667 12.65 0.00 0.00 4.85
4722 5470 2.092323 GATGTTGTAAGGCTTGGACCC 58.908 52.381 10.69 0.00 0.00 4.46
4815 5563 4.566004 TCACTCCCACTTGAATAAACTCG 58.434 43.478 0.00 0.00 0.00 4.18
4856 5604 8.990693 ATCACATCTAGGTTATAAATACCCCT 57.009 34.615 0.00 0.00 36.27 4.79
4875 5623 5.011329 AGCCTTGTTCATTTGTCAATCACAT 59.989 36.000 0.00 0.00 33.90 3.21
4900 5648 2.103941 CTCACCTCCTCATCTTAAGGGC 59.896 54.545 1.85 0.00 34.46 5.19
4948 5696 0.107456 CAGCCTAATGGGAGCACGAT 59.893 55.000 0.00 0.00 37.23 3.73
4962 5710 0.321919 TCGCAATCTTTCTGCAGCCT 60.322 50.000 9.47 0.00 39.91 4.58
5018 5766 4.833478 AGCTCAAGCCTATGAAGAGAAA 57.167 40.909 0.00 0.00 43.38 2.52
5054 5802 2.966050 AGACCAAGTCGAAGATGAAGC 58.034 47.619 0.00 0.00 40.67 3.86
5057 5805 7.979444 AAATAAAAGACCAAGTCGAAGATGA 57.021 32.000 0.00 0.00 40.67 2.92
5064 5812 9.118236 GAAATGAGAAAATAAAAGACCAAGTCG 57.882 33.333 0.00 0.00 37.67 4.18
5085 5833 3.563808 TGGTCAACGAGTCAAAGGAAATG 59.436 43.478 0.00 0.00 0.00 2.32
5088 5836 2.992124 TGGTCAACGAGTCAAAGGAA 57.008 45.000 0.00 0.00 0.00 3.36
5099 5847 4.552166 AAACAAGTCTTCATGGTCAACG 57.448 40.909 0.00 0.00 0.00 4.10
5121 5869 5.521906 AGCTATCTCGCTCAAATAAGTCA 57.478 39.130 0.00 0.00 34.57 3.41
5122 5870 5.332959 GCAAGCTATCTCGCTCAAATAAGTC 60.333 44.000 0.00 0.00 39.86 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.