Multiple sequence alignment - TraesCS1D01G109800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G109800 chr1D 100.000 2819 0 0 1 2819 103471860 103474678 0.000000e+00 5206.0
1 TraesCS1D01G109800 chr1D 87.099 1248 91 45 999 2214 469890685 469889476 0.000000e+00 1349.0
2 TraesCS1D01G109800 chr1D 84.509 1233 103 45 1003 2214 469887353 469886188 0.000000e+00 1138.0
3 TraesCS1D01G109800 chr1D 86.070 201 17 6 2058 2253 469889341 469889147 3.680000e-49 206.0
4 TraesCS1D01G109800 chr1D 96.667 90 3 0 1 90 103423663 103423752 1.750000e-32 150.0
5 TraesCS1D01G109800 chr1D 86.992 123 12 4 2083 2205 469885867 469885749 4.900000e-28 135.0
6 TraesCS1D01G109800 chr1A 92.404 1672 77 22 634 2293 101336089 101334456 0.000000e+00 2338.0
7 TraesCS1D01G109800 chr1A 87.850 1037 73 32 1012 2029 563184186 563183184 0.000000e+00 1168.0
8 TraesCS1D01G109800 chr1A 96.324 544 19 1 1042 1584 563180442 563179899 0.000000e+00 893.0
9 TraesCS1D01G109800 chr1A 87.708 301 32 5 1914 2214 563183181 563182886 2.080000e-91 346.0
10 TraesCS1D01G109800 chr1A 93.243 148 10 0 2406 2553 101334450 101334303 4.730000e-53 219.0
11 TraesCS1D01G109800 chr1A 94.737 38 2 0 2545 2582 101333640 101333603 3.030000e-05 60.2
12 TraesCS1D01G109800 chr1B 92.441 1495 69 24 844 2325 162806483 162805020 0.000000e+00 2095.0
13 TraesCS1D01G109800 chr1B 86.504 1267 86 48 999 2221 651561396 651560171 0.000000e+00 1314.0
14 TraesCS1D01G109800 chr1B 91.763 692 28 9 1042 1725 651558196 651557526 0.000000e+00 935.0
15 TraesCS1D01G109800 chr1B 88.768 276 21 8 1914 2189 651557392 651557127 2.090000e-86 329.0
16 TraesCS1D01G109800 chr1B 87.692 195 17 7 639 829 162807588 162807397 1.310000e-53 220.0
17 TraesCS1D01G109800 chr1B 98.305 59 1 0 799 857 162807451 162807393 1.380000e-18 104.0
18 TraesCS1D01G109800 chr1B 83.333 66 9 2 2332 2396 332803144 332803080 3.030000e-05 60.2
19 TraesCS1D01G109800 chr1B 94.872 39 0 2 2322 2360 476344274 476344238 3.030000e-05 60.2
20 TraesCS1D01G109800 chr5D 97.473 554 13 1 81 633 208124380 208123827 0.000000e+00 944.0
21 TraesCS1D01G109800 chr5D 96.667 90 3 0 1 90 208124496 208124407 1.750000e-32 150.0
22 TraesCS1D01G109800 chr5D 96.667 90 3 0 1 90 379926076 379925987 1.750000e-32 150.0
23 TraesCS1D01G109800 chr4D 96.931 554 16 1 81 633 94701921 94702474 0.000000e+00 928.0
24 TraesCS1D01G109800 chr4D 95.944 567 20 3 81 646 94712804 94713368 0.000000e+00 917.0
25 TraesCS1D01G109800 chr4D 96.667 90 3 0 1 90 328989303 328989214 1.750000e-32 150.0
26 TraesCS1D01G109800 chr4D 95.556 90 4 0 1 90 94701805 94701894 8.140000e-31 145.0
27 TraesCS1D01G109800 chr2D 96.931 554 16 1 81 633 313211301 313210748 0.000000e+00 928.0
28 TraesCS1D01G109800 chr2D 96.751 554 17 1 81 633 476750699 476751252 0.000000e+00 922.0
29 TraesCS1D01G109800 chr2D 96.570 554 18 1 81 633 521518420 521518973 0.000000e+00 917.0
30 TraesCS1D01G109800 chr2D 96.237 558 18 3 81 636 476761015 476761571 0.000000e+00 911.0
31 TraesCS1D01G109800 chr2D 94.595 37 0 2 2323 2359 555933352 555933386 3.920000e-04 56.5
32 TraesCS1D01G109800 chr7D 96.570 554 18 1 81 633 71024776 71024223 0.000000e+00 917.0
33 TraesCS1D01G109800 chr7D 91.049 648 22 8 1 633 33844021 33843395 0.000000e+00 843.0
34 TraesCS1D01G109800 chr6D 96.396 555 18 2 81 633 44284757 44284203 0.000000e+00 913.0
35 TraesCS1D01G109800 chr6D 96.667 90 3 0 1 90 44284873 44284784 1.750000e-32 150.0
36 TraesCS1D01G109800 chrUn 98.997 399 4 0 1084 1482 478858132 478857734 0.000000e+00 715.0
37 TraesCS1D01G109800 chrUn 100.000 28 0 0 2332 2359 108299070 108299097 5.000000e-03 52.8
38 TraesCS1D01G109800 chr3B 87.302 252 19 9 1838 2081 758008720 758008474 2.770000e-70 276.0
39 TraesCS1D01G109800 chr3D 96.667 90 3 0 1 90 253364236 253364147 1.750000e-32 150.0
40 TraesCS1D01G109800 chr3D 96.667 90 3 0 1 90 253377695 253377606 1.750000e-32 150.0
41 TraesCS1D01G109800 chr6B 94.595 37 0 2 2323 2359 501066259 501066293 3.920000e-04 56.5
42 TraesCS1D01G109800 chr3A 94.595 37 0 2 2324 2359 10158806 10158841 3.920000e-04 56.5
43 TraesCS1D01G109800 chr2B 94.595 37 0 2 2323 2359 662797597 662797631 3.920000e-04 56.5
44 TraesCS1D01G109800 chr2B 94.444 36 0 2 2324 2359 448906768 448906735 1.000000e-03 54.7
45 TraesCS1D01G109800 chr5B 94.444 36 0 2 2324 2359 322144416 322144383 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G109800 chr1D 103471860 103474678 2818 False 5206.000000 5206 100.000000 1 2819 1 chr1D.!!$F2 2818
1 TraesCS1D01G109800 chr1D 469885749 469890685 4936 True 707.000000 1349 86.167500 999 2253 4 chr1D.!!$R1 1254
2 TraesCS1D01G109800 chr1A 101333603 101336089 2486 True 872.400000 2338 93.461333 634 2582 3 chr1A.!!$R1 1948
3 TraesCS1D01G109800 chr1A 563179899 563184186 4287 True 802.333333 1168 90.627333 1012 2214 3 chr1A.!!$R2 1202
4 TraesCS1D01G109800 chr1B 651557127 651561396 4269 True 859.333333 1314 89.011667 999 2221 3 chr1B.!!$R4 1222
5 TraesCS1D01G109800 chr1B 162805020 162807588 2568 True 806.333333 2095 92.812667 639 2325 3 chr1B.!!$R3 1686
6 TraesCS1D01G109800 chr5D 208123827 208124496 669 True 547.000000 944 97.070000 1 633 2 chr5D.!!$R2 632
7 TraesCS1D01G109800 chr4D 94712804 94713368 564 False 917.000000 917 95.944000 81 646 1 chr4D.!!$F1 565
8 TraesCS1D01G109800 chr4D 94701805 94702474 669 False 536.500000 928 96.243500 1 633 2 chr4D.!!$F2 632
9 TraesCS1D01G109800 chr2D 313210748 313211301 553 True 928.000000 928 96.931000 81 633 1 chr2D.!!$R1 552
10 TraesCS1D01G109800 chr2D 476750699 476751252 553 False 922.000000 922 96.751000 81 633 1 chr2D.!!$F1 552
11 TraesCS1D01G109800 chr2D 521518420 521518973 553 False 917.000000 917 96.570000 81 633 1 chr2D.!!$F3 552
12 TraesCS1D01G109800 chr2D 476761015 476761571 556 False 911.000000 911 96.237000 81 636 1 chr2D.!!$F2 555
13 TraesCS1D01G109800 chr7D 71024223 71024776 553 True 917.000000 917 96.570000 81 633 1 chr7D.!!$R2 552
14 TraesCS1D01G109800 chr7D 33843395 33844021 626 True 843.000000 843 91.049000 1 633 1 chr7D.!!$R1 632
15 TraesCS1D01G109800 chr6D 44284203 44284873 670 True 531.500000 913 96.531500 1 633 2 chr6D.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 334 0.033796 TAGGTGCCTGCGGTACTACT 60.034 55.0 13.44 7.45 38.37 2.57 F
579 640 0.606604 AAGGCACACGATTAGTCCGT 59.393 50.0 0.00 0.00 41.36 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 2155 0.386113 TGACGTTGTCGATGGTGTCA 59.614 50.0 8.75 8.75 40.62 3.58 R
2136 3283 0.476338 TGGCTAAACCACAAGGCAGA 59.524 50.0 0.00 0.00 46.36 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.875327 ATAAAAATACATCCGTGCCTACTTT 57.125 32.000 0.00 0.00 0.00 2.66
79 80 1.135333 GTACTACAGCTGGAGGAGTGC 59.865 57.143 29.50 18.72 0.00 4.40
274 334 0.033796 TAGGTGCCTGCGGTACTACT 60.034 55.000 13.44 7.45 38.37 2.57
491 552 6.586844 CCACCAAAAAGAAACGTAGAAAAACA 59.413 34.615 0.00 0.00 0.00 2.83
579 640 0.606604 AAGGCACACGATTAGTCCGT 59.393 50.000 0.00 0.00 41.36 4.69
600 661 6.095300 TCCGTAAAAGCATTGTCATCAATCAT 59.905 34.615 0.00 0.00 41.66 2.45
605 666 7.827819 AAAGCATTGTCATCAATCATCAAAG 57.172 32.000 0.00 0.00 41.66 2.77
671 732 2.416747 TGCGAGAAATCAACTCCTGTG 58.583 47.619 0.00 0.00 0.00 3.66
921 1908 2.271800 CGAAGCCTAGTCAATCCACAC 58.728 52.381 0.00 0.00 0.00 3.82
1464 2464 2.581354 CTCAGGAAGGAGTGCCCG 59.419 66.667 0.00 0.00 40.87 6.13
1654 2656 4.575645 TCCCGTTTGTCGTTTAAACTGAAT 59.424 37.500 16.01 0.00 36.22 2.57
1699 2702 2.472695 TTTCATCGCCTACTGCTGTT 57.527 45.000 0.09 0.00 38.05 3.16
1758 2761 8.840321 TGCTATCAGTCTAAATGCTTTTAATCC 58.160 33.333 6.29 0.00 0.00 3.01
1831 2842 2.034254 GCGATCACGAGACATGTTGATG 60.034 50.000 14.05 8.59 42.66 3.07
1843 2854 3.777478 CATGTTGATGCATGGGTTCTTC 58.223 45.455 2.46 0.00 41.70 2.87
1968 2985 7.223584 TGATTCTTTGAGGTGTGTGATCTTTA 58.776 34.615 0.00 0.00 0.00 1.85
2003 3137 3.441572 AGAATTCAGTTCATTCCAAGCGG 59.558 43.478 8.44 0.00 39.39 5.52
2025 3159 4.417506 GTTGTGTGGTTGGTTTGTTCTAC 58.582 43.478 0.00 0.00 0.00 2.59
2030 3176 4.751098 TGTGGTTGGTTTGTTCTACGTATC 59.249 41.667 0.00 0.00 0.00 2.24
2034 3180 5.467735 GGTTGGTTTGTTCTACGTATCTGTT 59.532 40.000 0.00 0.00 0.00 3.16
2094 3241 7.670605 ATATGTAGTCAGTTACCTTTGGCTA 57.329 36.000 0.00 0.00 30.73 3.93
2196 3350 2.689983 CCATTCACCATTGCCTACCTTC 59.310 50.000 0.00 0.00 0.00 3.46
2221 3665 6.370453 GGTGGTAATATTGGTTGGGTCTATT 58.630 40.000 0.00 0.00 0.00 1.73
2280 3733 3.206150 GTGAGTTTTGCTGTCCTCTTGA 58.794 45.455 0.00 0.00 0.00 3.02
2325 3779 7.227711 TCTCTCACATAAGCTGTAGATCTGTAC 59.772 40.741 5.18 0.00 35.91 2.90
2327 3781 7.227711 TCTCACATAAGCTGTAGATCTGTACTC 59.772 40.741 5.18 0.00 35.91 2.59
2328 3782 6.263392 TCACATAAGCTGTAGATCTGTACTCC 59.737 42.308 5.18 0.00 35.91 3.85
2329 3783 5.536916 ACATAAGCTGTAGATCTGTACTCCC 59.463 44.000 5.18 0.00 35.91 4.30
2331 3785 3.827722 AGCTGTAGATCTGTACTCCCTC 58.172 50.000 5.18 0.00 0.00 4.30
2335 4066 5.042463 TGTAGATCTGTACTCCCTCTCTG 57.958 47.826 5.18 0.00 0.00 3.35
2337 4068 5.666265 TGTAGATCTGTACTCCCTCTCTGTA 59.334 44.000 5.18 0.00 0.00 2.74
2348 4079 7.554959 ACTCCCTCTCTGTAAAGAAATGTAA 57.445 36.000 0.00 0.00 0.00 2.41
2349 4080 7.616313 ACTCCCTCTCTGTAAAGAAATGTAAG 58.384 38.462 0.00 0.00 0.00 2.34
2351 4082 7.841956 TCCCTCTCTGTAAAGAAATGTAAGAG 58.158 38.462 0.00 0.00 0.00 2.85
2352 4083 6.536941 CCCTCTCTGTAAAGAAATGTAAGAGC 59.463 42.308 0.00 0.00 31.76 4.09
2355 4086 7.152645 TCTCTGTAAAGAAATGTAAGAGCGTT 58.847 34.615 0.00 0.00 31.76 4.84
2356 4087 7.656137 TCTCTGTAAAGAAATGTAAGAGCGTTT 59.344 33.333 0.00 0.00 31.76 3.60
2357 4088 8.821147 TCTGTAAAGAAATGTAAGAGCGTTTA 57.179 30.769 0.00 0.00 0.00 2.01
2359 4090 8.597662 TGTAAAGAAATGTAAGAGCGTTTAGT 57.402 30.769 0.00 0.00 0.00 2.24
2360 4091 8.492748 TGTAAAGAAATGTAAGAGCGTTTAGTG 58.507 33.333 0.00 0.00 0.00 2.74
2361 4092 7.724305 AAAGAAATGTAAGAGCGTTTAGTGA 57.276 32.000 0.00 0.00 0.00 3.41
2365 4096 8.033038 AGAAATGTAAGAGCGTTTAGTGATGTA 58.967 33.333 0.00 0.00 0.00 2.29
2366 4097 8.542497 AAATGTAAGAGCGTTTAGTGATGTAA 57.458 30.769 0.00 0.00 0.00 2.41
2367 4098 8.542497 AATGTAAGAGCGTTTAGTGATGTAAA 57.458 30.769 0.00 0.00 0.00 2.01
2369 4100 9.811995 ATGTAAGAGCGTTTAGTGATGTAAATA 57.188 29.630 0.00 0.00 0.00 1.40
2370 4101 9.297586 TGTAAGAGCGTTTAGTGATGTAAATAG 57.702 33.333 0.00 0.00 0.00 1.73
2371 4102 9.512435 GTAAGAGCGTTTAGTGATGTAAATAGA 57.488 33.333 0.00 0.00 0.00 1.98
2373 4104 8.581057 AGAGCGTTTAGTGATGTAAATAGATG 57.419 34.615 0.00 0.00 0.00 2.90
2374 4105 7.169982 AGAGCGTTTAGTGATGTAAATAGATGC 59.830 37.037 0.00 0.00 0.00 3.91
2378 4109 9.035607 CGTTTAGTGATGTAAATAGATGCTCTT 57.964 33.333 0.00 0.00 0.00 2.85
2394 4507 8.594881 AGATGCTCTTATATTTGTTTACGGAG 57.405 34.615 0.00 0.00 0.00 4.63
2398 4511 7.707893 TGCTCTTATATTTGTTTACGGAGGTAC 59.292 37.037 0.00 0.00 0.00 3.34
2401 4514 8.199449 TCTTATATTTGTTTACGGAGGTACCAG 58.801 37.037 15.94 7.59 38.90 4.00
2412 4525 4.774200 ACGGAGGTACCAGTAGTTTACAAT 59.226 41.667 15.94 0.00 38.90 2.71
2430 4580 2.665649 ATTGCCGACGTAATCAGTGA 57.334 45.000 0.00 0.00 0.00 3.41
2465 4616 4.448210 TCTCGGTATGTTTAGCCAATTCC 58.552 43.478 0.00 0.00 0.00 3.01
2489 4640 2.125952 GAATTGGCCCAACGCTGC 60.126 61.111 0.00 0.00 37.74 5.25
2490 4641 2.916703 AATTGGCCCAACGCTGCA 60.917 55.556 0.00 0.00 37.74 4.41
2582 7642 1.805943 TGCGGATGAAACATGTGACTG 59.194 47.619 0.00 0.00 0.00 3.51
2583 7643 2.076100 GCGGATGAAACATGTGACTGA 58.924 47.619 0.00 0.00 0.00 3.41
2585 7645 3.058293 GCGGATGAAACATGTGACTGAAA 60.058 43.478 0.00 0.00 0.00 2.69
2587 7647 5.702865 CGGATGAAACATGTGACTGAAATT 58.297 37.500 0.00 0.00 0.00 1.82
2593 7653 6.471841 TGAAACATGTGACTGAAATTTTCACG 59.528 34.615 7.74 7.24 42.20 4.35
2594 7654 5.499139 ACATGTGACTGAAATTTTCACGT 57.501 34.783 7.74 11.76 42.20 4.49
2595 7655 5.510671 ACATGTGACTGAAATTTTCACGTC 58.489 37.500 21.84 21.84 42.20 4.34
2597 7657 5.403897 TGTGACTGAAATTTTCACGTCTC 57.596 39.130 25.16 23.18 42.20 3.36
2598 7658 5.116180 TGTGACTGAAATTTTCACGTCTCT 58.884 37.500 25.16 6.37 42.20 3.10
2599 7659 5.006649 TGTGACTGAAATTTTCACGTCTCTG 59.993 40.000 25.16 13.07 42.20 3.35
2601 7661 5.234329 TGACTGAAATTTTCACGTCTCTGTC 59.766 40.000 25.16 20.16 38.01 3.51
2602 7662 5.360591 ACTGAAATTTTCACGTCTCTGTCT 58.639 37.500 7.74 0.00 35.46 3.41
2604 7664 4.750098 TGAAATTTTCACGTCTCTGTCTCC 59.250 41.667 7.74 0.00 34.08 3.71
2605 7665 2.417339 TTTTCACGTCTCTGTCTCCG 57.583 50.000 0.00 0.00 0.00 4.63
2608 7668 1.442857 CACGTCTCTGTCTCCGTGC 60.443 63.158 0.00 0.00 43.26 5.34
2609 7669 1.897137 ACGTCTCTGTCTCCGTGCA 60.897 57.895 0.00 0.00 31.43 4.57
2610 7670 1.285950 CGTCTCTGTCTCCGTGCAA 59.714 57.895 0.00 0.00 0.00 4.08
2612 7672 1.011451 GTCTCTGTCTCCGTGCAAGC 61.011 60.000 0.00 0.00 0.00 4.01
2613 7673 1.739562 CTCTGTCTCCGTGCAAGCC 60.740 63.158 0.00 0.00 0.00 4.35
2614 7674 2.164865 CTCTGTCTCCGTGCAAGCCT 62.165 60.000 0.00 0.00 0.00 4.58
2615 7675 0.898326 TCTGTCTCCGTGCAAGCCTA 60.898 55.000 0.00 0.00 0.00 3.93
2616 7676 0.459237 CTGTCTCCGTGCAAGCCTAG 60.459 60.000 0.00 0.00 0.00 3.02
2617 7677 1.153549 GTCTCCGTGCAAGCCTAGG 60.154 63.158 3.67 3.67 0.00 3.02
2618 7678 2.187946 CTCCGTGCAAGCCTAGGG 59.812 66.667 11.72 0.00 0.00 3.53
2619 7679 3.391665 CTCCGTGCAAGCCTAGGGG 62.392 68.421 11.72 0.82 0.00 4.79
2620 7680 4.489771 CCGTGCAAGCCTAGGGGG 62.490 72.222 11.72 0.00 38.36 5.40
2633 7693 3.816994 CCTAGGGGGCTTGTTTGTATAC 58.183 50.000 0.00 0.00 0.00 1.47
2634 7694 3.201266 CCTAGGGGGCTTGTTTGTATACA 59.799 47.826 0.08 0.08 0.00 2.29
2635 7695 3.818295 AGGGGGCTTGTTTGTATACAA 57.182 42.857 14.35 14.35 36.63 2.41
2644 7704 5.869350 CTTGTTTGTATACAAGCCTGTAGC 58.131 41.667 24.30 4.56 45.85 3.58
2645 7705 5.411361 CTTGTTTGTATACAAGCCTGTAGCA 59.589 40.000 24.30 6.89 45.85 3.49
2646 7706 6.094048 CTTGTTTGTATACAAGCCTGTAGCAT 59.906 38.462 24.30 0.00 45.85 3.79
2647 7707 7.888168 CTTGTTTGTATACAAGCCTGTAGCATG 60.888 40.741 24.30 7.94 45.85 4.06
2648 7708 5.351948 TTGTATACAAGCCTGTAGCATGA 57.648 39.130 14.35 0.00 42.92 3.07
2649 7709 5.351948 TGTATACAAGCCTGTAGCATGAA 57.648 39.130 2.20 0.00 42.92 2.57
2650 7710 5.359756 TGTATACAAGCCTGTAGCATGAAG 58.640 41.667 2.20 0.00 42.92 3.02
2651 7711 2.867109 ACAAGCCTGTAGCATGAAGT 57.133 45.000 0.00 0.00 42.92 3.01
2652 7712 3.146104 ACAAGCCTGTAGCATGAAGTT 57.854 42.857 0.00 0.00 42.92 2.66
2653 7713 2.816087 ACAAGCCTGTAGCATGAAGTTG 59.184 45.455 0.00 0.00 42.92 3.16
2654 7714 2.816087 CAAGCCTGTAGCATGAAGTTGT 59.184 45.455 0.00 0.00 42.92 3.32
2655 7715 4.002982 CAAGCCTGTAGCATGAAGTTGTA 58.997 43.478 0.00 0.00 42.92 2.41
2656 7716 4.093998 CAAGCCTGTAGCATGAAGTTGTAG 59.906 45.833 0.00 0.00 42.92 2.74
2657 7717 2.352960 GCCTGTAGCATGAAGTTGTAGC 59.647 50.000 0.00 0.00 42.97 3.58
2658 7718 3.866651 CCTGTAGCATGAAGTTGTAGCT 58.133 45.455 0.00 0.00 39.22 3.32
2659 7719 4.680708 GCCTGTAGCATGAAGTTGTAGCTA 60.681 45.833 0.00 0.00 42.97 3.32
2660 7720 5.419542 CCTGTAGCATGAAGTTGTAGCTAA 58.580 41.667 0.00 0.00 39.26 3.09
2661 7721 5.521735 CCTGTAGCATGAAGTTGTAGCTAAG 59.478 44.000 0.00 0.00 39.26 2.18
2662 7722 6.280855 TGTAGCATGAAGTTGTAGCTAAGA 57.719 37.500 0.00 0.00 39.26 2.10
2663 7723 6.333416 TGTAGCATGAAGTTGTAGCTAAGAG 58.667 40.000 0.00 0.00 39.26 2.85
2664 7724 5.413309 AGCATGAAGTTGTAGCTAAGAGT 57.587 39.130 0.00 0.00 33.06 3.24
2665 7725 5.174395 AGCATGAAGTTGTAGCTAAGAGTG 58.826 41.667 0.00 0.00 33.06 3.51
2666 7726 4.201763 GCATGAAGTTGTAGCTAAGAGTGC 60.202 45.833 0.00 0.00 0.00 4.40
2667 7727 4.873746 TGAAGTTGTAGCTAAGAGTGCT 57.126 40.909 0.00 0.00 43.79 4.40
2668 7728 5.215252 TGAAGTTGTAGCTAAGAGTGCTT 57.785 39.130 0.00 0.00 41.46 3.91
2669 7729 5.230942 TGAAGTTGTAGCTAAGAGTGCTTC 58.769 41.667 0.00 5.13 41.46 3.86
2670 7730 5.011125 TGAAGTTGTAGCTAAGAGTGCTTCT 59.989 40.000 0.00 0.00 41.46 2.85
2671 7731 4.815269 AGTTGTAGCTAAGAGTGCTTCTG 58.185 43.478 0.00 0.00 41.46 3.02
2672 7732 3.876274 TGTAGCTAAGAGTGCTTCTGG 57.124 47.619 0.00 0.00 41.46 3.86
2673 7733 3.431415 TGTAGCTAAGAGTGCTTCTGGA 58.569 45.455 0.00 0.00 41.46 3.86
2674 7734 4.026744 TGTAGCTAAGAGTGCTTCTGGAT 58.973 43.478 0.00 0.00 41.46 3.41
2675 7735 4.467795 TGTAGCTAAGAGTGCTTCTGGATT 59.532 41.667 0.00 0.00 41.46 3.01
2676 7736 3.871485 AGCTAAGAGTGCTTCTGGATTG 58.129 45.455 0.00 0.00 37.52 2.67
2677 7737 3.262915 AGCTAAGAGTGCTTCTGGATTGT 59.737 43.478 0.00 0.00 37.52 2.71
2678 7738 3.373439 GCTAAGAGTGCTTCTGGATTGTG 59.627 47.826 0.00 0.00 35.91 3.33
2679 7739 2.486472 AGAGTGCTTCTGGATTGTGG 57.514 50.000 0.00 0.00 33.93 4.17
2680 7740 1.701847 AGAGTGCTTCTGGATTGTGGT 59.298 47.619 0.00 0.00 33.93 4.16
2681 7741 2.079925 GAGTGCTTCTGGATTGTGGTC 58.920 52.381 0.00 0.00 0.00 4.02
2682 7742 0.798776 GTGCTTCTGGATTGTGGTCG 59.201 55.000 0.00 0.00 0.00 4.79
2683 7743 0.396435 TGCTTCTGGATTGTGGTCGT 59.604 50.000 0.00 0.00 0.00 4.34
2684 7744 0.798776 GCTTCTGGATTGTGGTCGTG 59.201 55.000 0.00 0.00 0.00 4.35
2685 7745 0.798776 CTTCTGGATTGTGGTCGTGC 59.201 55.000 0.00 0.00 0.00 5.34
2686 7746 0.107643 TTCTGGATTGTGGTCGTGCA 59.892 50.000 0.00 0.00 0.00 4.57
2687 7747 0.107643 TCTGGATTGTGGTCGTGCAA 59.892 50.000 0.00 0.00 0.00 4.08
2688 7748 1.167851 CTGGATTGTGGTCGTGCAAT 58.832 50.000 0.00 0.00 37.94 3.56
2689 7749 1.541147 CTGGATTGTGGTCGTGCAATT 59.459 47.619 0.00 0.00 35.69 2.32
2690 7750 1.959985 TGGATTGTGGTCGTGCAATTT 59.040 42.857 0.00 0.00 35.69 1.82
2691 7751 2.030363 TGGATTGTGGTCGTGCAATTTC 60.030 45.455 0.00 0.00 35.69 2.17
2692 7752 2.030363 GGATTGTGGTCGTGCAATTTCA 60.030 45.455 0.00 0.00 35.69 2.69
2693 7753 3.367292 GGATTGTGGTCGTGCAATTTCAT 60.367 43.478 0.00 0.00 35.69 2.57
2694 7754 2.702898 TGTGGTCGTGCAATTTCATG 57.297 45.000 0.00 0.00 0.00 3.07
2695 7755 2.225467 TGTGGTCGTGCAATTTCATGA 58.775 42.857 0.00 0.00 0.00 3.07
2696 7756 2.620585 TGTGGTCGTGCAATTTCATGAA 59.379 40.909 3.38 3.38 34.16 2.57
2697 7757 2.979813 GTGGTCGTGCAATTTCATGAAC 59.020 45.455 7.89 8.24 39.51 3.18
2698 7758 2.884012 TGGTCGTGCAATTTCATGAACT 59.116 40.909 15.02 0.00 39.71 3.01
2699 7759 3.236816 GGTCGTGCAATTTCATGAACTG 58.763 45.455 7.89 9.80 36.88 3.16
2700 7760 3.304659 GGTCGTGCAATTTCATGAACTGT 60.305 43.478 7.89 0.00 36.88 3.55
2701 7761 3.665409 GTCGTGCAATTTCATGAACTGTG 59.335 43.478 7.89 7.66 34.16 3.66
2702 7762 3.563390 TCGTGCAATTTCATGAACTGTGA 59.437 39.130 7.89 6.11 0.00 3.58
2703 7763 4.216042 TCGTGCAATTTCATGAACTGTGAT 59.784 37.500 7.89 0.00 0.00 3.06
2704 7764 4.556135 CGTGCAATTTCATGAACTGTGATC 59.444 41.667 7.89 3.19 0.00 2.92
2705 7765 5.463286 GTGCAATTTCATGAACTGTGATCA 58.537 37.500 7.89 0.00 0.00 2.92
2706 7766 5.571741 GTGCAATTTCATGAACTGTGATCAG 59.428 40.000 7.89 0.00 46.18 2.90
2707 7767 4.561606 GCAATTTCATGAACTGTGATCAGC 59.438 41.667 7.89 3.59 44.77 4.26
2708 7768 4.611310 ATTTCATGAACTGTGATCAGCG 57.389 40.909 7.89 0.00 44.77 5.18
2709 7769 2.014335 TCATGAACTGTGATCAGCGG 57.986 50.000 0.00 0.00 44.77 5.52
2710 7770 0.376152 CATGAACTGTGATCAGCGGC 59.624 55.000 0.00 0.00 44.77 6.53
2711 7771 0.036105 ATGAACTGTGATCAGCGGCA 60.036 50.000 1.45 0.00 44.77 5.69
2712 7772 0.671472 TGAACTGTGATCAGCGGCAG 60.671 55.000 1.45 8.99 44.77 4.85
2713 7773 1.975363 GAACTGTGATCAGCGGCAGC 61.975 60.000 10.18 0.00 44.77 5.25
2726 7786 4.847255 GCAGCGTTGCTAAACCAG 57.153 55.556 17.71 0.00 46.95 4.00
2735 7795 2.467962 GCTAAACCAGCGAGAACCC 58.532 57.895 0.00 0.00 41.37 4.11
2736 7796 0.321298 GCTAAACCAGCGAGAACCCA 60.321 55.000 0.00 0.00 41.37 4.51
2737 7797 1.726853 CTAAACCAGCGAGAACCCAG 58.273 55.000 0.00 0.00 0.00 4.45
2738 7798 1.002087 CTAAACCAGCGAGAACCCAGT 59.998 52.381 0.00 0.00 0.00 4.00
2739 7799 0.182775 AAACCAGCGAGAACCCAGTT 59.817 50.000 0.00 0.00 0.00 3.16
2740 7800 0.250338 AACCAGCGAGAACCCAGTTC 60.250 55.000 0.00 0.00 42.25 3.01
2741 7801 1.738099 CCAGCGAGAACCCAGTTCG 60.738 63.158 2.04 0.00 45.96 3.95
2742 7802 1.738099 CAGCGAGAACCCAGTTCGG 60.738 63.158 2.04 0.58 45.96 4.30
2743 7803 1.906824 AGCGAGAACCCAGTTCGGA 60.907 57.895 2.04 0.00 45.96 4.55
2744 7804 1.218316 GCGAGAACCCAGTTCGGAT 59.782 57.895 2.04 0.00 45.96 4.18
2745 7805 1.084370 GCGAGAACCCAGTTCGGATG 61.084 60.000 2.04 0.00 45.96 3.51
2746 7806 0.246635 CGAGAACCCAGTTCGGATGT 59.753 55.000 2.04 0.00 45.96 3.06
2747 7807 1.726853 GAGAACCCAGTTCGGATGTG 58.273 55.000 2.04 0.00 45.96 3.21
2748 7808 1.002087 GAGAACCCAGTTCGGATGTGT 59.998 52.381 2.04 0.00 45.96 3.72
2749 7809 1.420138 AGAACCCAGTTCGGATGTGTT 59.580 47.619 2.04 0.00 45.96 3.32
2750 7810 2.158667 AGAACCCAGTTCGGATGTGTTT 60.159 45.455 2.04 0.00 45.96 2.83
2751 7811 1.604604 ACCCAGTTCGGATGTGTTTG 58.395 50.000 0.00 0.00 36.56 2.93
2752 7812 0.881118 CCCAGTTCGGATGTGTTTGG 59.119 55.000 0.00 0.00 36.56 3.28
2753 7813 1.604604 CCAGTTCGGATGTGTTTGGT 58.395 50.000 0.00 0.00 36.56 3.67
2754 7814 1.953686 CCAGTTCGGATGTGTTTGGTT 59.046 47.619 0.00 0.00 36.56 3.67
2755 7815 2.287547 CCAGTTCGGATGTGTTTGGTTG 60.288 50.000 0.00 0.00 36.56 3.77
2756 7816 1.953686 AGTTCGGATGTGTTTGGTTGG 59.046 47.619 0.00 0.00 0.00 3.77
2757 7817 1.000717 GTTCGGATGTGTTTGGTTGGG 60.001 52.381 0.00 0.00 0.00 4.12
2758 7818 0.474614 TCGGATGTGTTTGGTTGGGA 59.525 50.000 0.00 0.00 0.00 4.37
2759 7819 1.133761 TCGGATGTGTTTGGTTGGGAA 60.134 47.619 0.00 0.00 0.00 3.97
2760 7820 1.683917 CGGATGTGTTTGGTTGGGAAA 59.316 47.619 0.00 0.00 0.00 3.13
2761 7821 2.101582 CGGATGTGTTTGGTTGGGAAAA 59.898 45.455 0.00 0.00 0.00 2.29
2762 7822 3.727726 GGATGTGTTTGGTTGGGAAAAG 58.272 45.455 0.00 0.00 0.00 2.27
2763 7823 3.494223 GGATGTGTTTGGTTGGGAAAAGG 60.494 47.826 0.00 0.00 0.00 3.11
2764 7824 1.208293 TGTGTTTGGTTGGGAAAAGGC 59.792 47.619 0.00 0.00 0.00 4.35
2765 7825 0.461961 TGTTTGGTTGGGAAAAGGCG 59.538 50.000 0.00 0.00 0.00 5.52
2766 7826 0.878523 GTTTGGTTGGGAAAAGGCGC 60.879 55.000 0.00 0.00 0.00 6.53
2767 7827 1.330655 TTTGGTTGGGAAAAGGCGCA 61.331 50.000 10.83 0.00 0.00 6.09
2768 7828 1.743321 TTGGTTGGGAAAAGGCGCAG 61.743 55.000 10.83 0.00 32.08 5.18
2785 7845 2.490217 GCGGCAGCGTCTCTCTTA 59.510 61.111 0.00 0.00 0.00 2.10
2786 7846 1.066587 GCGGCAGCGTCTCTCTTAT 59.933 57.895 0.00 0.00 0.00 1.73
2787 7847 0.937231 GCGGCAGCGTCTCTCTTATC 60.937 60.000 0.00 0.00 0.00 1.75
2788 7848 0.658829 CGGCAGCGTCTCTCTTATCG 60.659 60.000 0.00 0.00 0.00 2.92
2789 7849 0.663688 GGCAGCGTCTCTCTTATCGA 59.336 55.000 0.00 0.00 0.00 3.59
2790 7850 1.334599 GGCAGCGTCTCTCTTATCGAG 60.335 57.143 0.00 0.00 41.30 4.04
2791 7851 1.334599 GCAGCGTCTCTCTTATCGAGG 60.335 57.143 0.00 0.00 40.30 4.63
2792 7852 1.944024 CAGCGTCTCTCTTATCGAGGT 59.056 52.381 0.00 0.00 40.30 3.85
2793 7853 2.032377 CAGCGTCTCTCTTATCGAGGTC 60.032 54.545 0.00 0.00 40.30 3.85
2794 7854 1.264826 GCGTCTCTCTTATCGAGGTCC 59.735 57.143 0.00 0.00 40.30 4.46
2795 7855 2.841215 CGTCTCTCTTATCGAGGTCCT 58.159 52.381 0.00 0.00 40.30 3.85
2796 7856 2.546368 CGTCTCTCTTATCGAGGTCCTG 59.454 54.545 0.00 0.00 40.30 3.86
2797 7857 2.882137 GTCTCTCTTATCGAGGTCCTGG 59.118 54.545 0.00 0.00 40.30 4.45
2798 7858 2.778270 TCTCTCTTATCGAGGTCCTGGA 59.222 50.000 6.00 6.00 40.30 3.86
2799 7859 2.882137 CTCTCTTATCGAGGTCCTGGAC 59.118 54.545 18.65 18.65 40.30 4.02
2800 7860 1.604755 CTCTTATCGAGGTCCTGGACG 59.395 57.143 19.98 9.65 36.06 4.79
2801 7861 0.030908 CTTATCGAGGTCCTGGACGC 59.969 60.000 19.98 13.44 32.65 5.19
2802 7862 1.389609 TTATCGAGGTCCTGGACGCC 61.390 60.000 19.98 12.84 32.65 5.68
2803 7863 2.280404 TATCGAGGTCCTGGACGCCT 62.280 60.000 19.98 12.91 32.65 5.52
2804 7864 3.382832 CGAGGTCCTGGACGCCTT 61.383 66.667 19.98 6.16 32.65 4.35
2805 7865 2.266055 GAGGTCCTGGACGCCTTG 59.734 66.667 19.98 0.00 32.65 3.61
2806 7866 3.959991 GAGGTCCTGGACGCCTTGC 62.960 68.421 19.98 5.64 32.65 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.076533 CACCTTGTGCGCGGTAGTAG 61.077 60.000 8.83 0.00 30.91 2.57
204 243 1.400530 GCAGGAGCCCACGGTAGTAT 61.401 60.000 0.00 0.00 33.58 2.12
360 421 1.425448 CTTGTCTCCACCTTTCCCCTT 59.575 52.381 0.00 0.00 0.00 3.95
491 552 3.128938 CCTCGAAGACTATTGAAGACGGT 59.871 47.826 0.00 0.00 0.00 4.83
579 640 9.361315 CTTTGATGATTGATGACAATGCTTTTA 57.639 29.630 0.00 0.00 45.30 1.52
600 661 6.490040 GCATATTTATCCCTAAGGTGCTTTGA 59.510 38.462 0.00 0.00 0.00 2.69
605 666 4.017126 GGGCATATTTATCCCTAAGGTGC 58.983 47.826 0.00 0.00 37.08 5.01
721 784 2.158957 ACGCCAAGAAGTTCACTGAAGA 60.159 45.455 5.50 0.00 0.00 2.87
771 835 9.618890 CTCCATTGTCTAAAGAAAATATCTCCA 57.381 33.333 0.00 0.00 37.42 3.86
772 836 9.838339 TCTCCATTGTCTAAAGAAAATATCTCC 57.162 33.333 0.00 0.00 37.42 3.71
787 851 8.964772 CCTCAAAGAAAAATATCTCCATTGTCT 58.035 33.333 0.00 0.00 0.00 3.41
788 852 8.960591 TCCTCAAAGAAAAATATCTCCATTGTC 58.039 33.333 0.00 0.00 0.00 3.18
789 853 8.743714 GTCCTCAAAGAAAAATATCTCCATTGT 58.256 33.333 0.00 0.00 0.00 2.71
790 854 8.742777 TGTCCTCAAAGAAAAATATCTCCATTG 58.257 33.333 0.00 0.00 0.00 2.82
897 1884 1.480954 GGATTGACTAGGCTTCGGTGA 59.519 52.381 0.00 0.00 0.00 4.02
902 1889 2.633488 GGTGTGGATTGACTAGGCTTC 58.367 52.381 0.00 0.00 0.00 3.86
921 1908 1.677633 CGGTACTTTTGGGCTGGGG 60.678 63.158 0.00 0.00 0.00 4.96
1155 2155 0.386113 TGACGTTGTCGATGGTGTCA 59.614 50.000 8.75 8.75 40.62 3.58
1263 2263 1.262417 TCTGGATGTTGTAGTCGGCA 58.738 50.000 0.00 0.00 0.00 5.69
1654 2656 6.373005 TTCAGGAAACATGATACTCAAGGA 57.627 37.500 0.00 0.00 0.00 3.36
1699 2702 3.961477 AATTTAAGCACGCATCGCATA 57.039 38.095 0.00 0.00 0.00 3.14
1831 2842 4.036852 GGTTATAAGCTGAAGAACCCATGC 59.963 45.833 12.68 0.00 34.67 4.06
1836 2847 8.352942 CAATAATGGGTTATAAGCTGAAGAACC 58.647 37.037 14.57 14.57 39.09 3.62
1843 2854 5.536161 ACCTGCAATAATGGGTTATAAGCTG 59.464 40.000 13.99 5.04 34.81 4.24
1855 2866 8.072567 GCTAATCTAGAAACACCTGCAATAATG 58.927 37.037 0.00 0.00 0.00 1.90
1856 2867 7.229506 GGCTAATCTAGAAACACCTGCAATAAT 59.770 37.037 0.00 0.00 0.00 1.28
1968 2985 8.114331 TGAACTGAATTCTAATTGCAAGTGAT 57.886 30.769 10.14 0.00 38.25 3.06
2003 3137 3.586100 AGAACAAACCAACCACACAAC 57.414 42.857 0.00 0.00 0.00 3.32
2030 3176 7.011482 GGCACATCTAGGTATGAACTAAAACAG 59.989 40.741 0.00 0.00 0.00 3.16
2034 3180 6.382859 TCAGGCACATCTAGGTATGAACTAAA 59.617 38.462 0.00 0.00 0.00 1.85
2094 3241 0.826715 ATCGCACTGCCACTGTCTAT 59.173 50.000 0.00 0.00 0.00 1.98
2136 3283 0.476338 TGGCTAAACCACAAGGCAGA 59.524 50.000 0.00 0.00 46.36 4.26
2196 3350 2.946990 GACCCAACCAATATTACCACCG 59.053 50.000 0.00 0.00 0.00 4.94
2221 3665 4.415881 AAACCGATAGACATATGGCACA 57.584 40.909 12.11 0.00 41.88 4.57
2280 3733 3.039743 AGACTGATGCCTCATCACATCT 58.960 45.455 5.48 8.57 44.60 2.90
2301 3754 7.057264 AGTACAGATCTACAGCTTATGTGAGA 58.943 38.462 0.00 0.00 43.80 3.27
2325 3779 7.841956 TCTTACATTTCTTTACAGAGAGGGAG 58.158 38.462 0.00 0.00 0.00 4.30
2327 3781 6.536941 GCTCTTACATTTCTTTACAGAGAGGG 59.463 42.308 0.00 0.00 31.25 4.30
2328 3782 6.254589 CGCTCTTACATTTCTTTACAGAGAGG 59.745 42.308 0.00 0.00 31.25 3.69
2329 3783 6.809196 ACGCTCTTACATTTCTTTACAGAGAG 59.191 38.462 0.00 0.00 34.15 3.20
2331 3785 6.952935 ACGCTCTTACATTTCTTTACAGAG 57.047 37.500 0.00 0.00 0.00 3.35
2335 4066 8.706035 TCACTAAACGCTCTTACATTTCTTTAC 58.294 33.333 0.00 0.00 0.00 2.01
2337 4068 7.724305 TCACTAAACGCTCTTACATTTCTTT 57.276 32.000 0.00 0.00 0.00 2.52
2348 4079 7.169982 GCATCTATTTACATCACTAAACGCTCT 59.830 37.037 0.00 0.00 0.00 4.09
2349 4080 7.169982 AGCATCTATTTACATCACTAAACGCTC 59.830 37.037 0.00 0.00 0.00 5.03
2351 4082 7.178712 AGCATCTATTTACATCACTAAACGC 57.821 36.000 0.00 0.00 0.00 4.84
2370 4101 7.441458 ACCTCCGTAAACAAATATAAGAGCATC 59.559 37.037 0.00 0.00 0.00 3.91
2371 4102 7.280356 ACCTCCGTAAACAAATATAAGAGCAT 58.720 34.615 0.00 0.00 0.00 3.79
2372 4103 6.646267 ACCTCCGTAAACAAATATAAGAGCA 58.354 36.000 0.00 0.00 0.00 4.26
2373 4104 7.170489 GGTACCTCCGTAAACAAATATAAGAGC 59.830 40.741 4.06 0.00 0.00 4.09
2374 4105 8.199449 TGGTACCTCCGTAAACAAATATAAGAG 58.801 37.037 14.36 0.00 39.52 2.85
2378 4109 7.422465 ACTGGTACCTCCGTAAACAAATATA 57.578 36.000 14.36 0.00 39.52 0.86
2379 4110 6.303903 ACTGGTACCTCCGTAAACAAATAT 57.696 37.500 14.36 0.00 39.52 1.28
2385 4498 4.790765 AACTACTGGTACCTCCGTAAAC 57.209 45.455 14.36 0.00 39.52 2.01
2389 4502 3.766545 TGTAAACTACTGGTACCTCCGT 58.233 45.455 14.36 10.06 39.52 4.69
2390 4503 4.789012 TTGTAAACTACTGGTACCTCCG 57.211 45.455 14.36 4.20 39.52 4.63
2394 4507 4.093850 CGGCAATTGTAAACTACTGGTACC 59.906 45.833 4.43 4.43 0.00 3.34
2398 4511 3.181524 CGTCGGCAATTGTAAACTACTGG 60.182 47.826 7.40 0.00 0.00 4.00
2401 4514 5.514059 TTACGTCGGCAATTGTAAACTAC 57.486 39.130 7.40 0.00 0.00 2.73
2412 4525 2.063266 GTTCACTGATTACGTCGGCAA 58.937 47.619 0.00 0.00 36.64 4.52
2430 4580 4.710375 ACATACCGAGATACTGAACCAGTT 59.290 41.667 4.85 0.00 42.59 3.16
2446 4596 5.514274 AATGGAATTGGCTAAACATACCG 57.486 39.130 0.00 0.00 33.44 4.02
2465 4616 2.609350 CGTTGGGCCAATTCTGAAATG 58.391 47.619 23.95 0.00 0.00 2.32
2489 4640 2.264813 GCAATGCCACTGTTGCTTATG 58.735 47.619 5.42 3.27 45.41 1.90
2490 4641 2.660189 GCAATGCCACTGTTGCTTAT 57.340 45.000 5.42 0.00 45.41 1.73
2582 7642 4.143305 CGGAGACAGAGACGTGAAAATTTC 60.143 45.833 0.00 0.00 0.00 2.17
2583 7643 3.741344 CGGAGACAGAGACGTGAAAATTT 59.259 43.478 0.00 0.00 0.00 1.82
2585 7645 2.296471 ACGGAGACAGAGACGTGAAAAT 59.704 45.455 0.00 0.00 38.24 1.82
2587 7647 1.315690 ACGGAGACAGAGACGTGAAA 58.684 50.000 0.00 0.00 38.24 2.69
2593 7653 1.011451 GCTTGCACGGAGACAGAGAC 61.011 60.000 0.00 0.00 0.00 3.36
2594 7654 1.290324 GCTTGCACGGAGACAGAGA 59.710 57.895 0.00 0.00 0.00 3.10
2595 7655 1.739562 GGCTTGCACGGAGACAGAG 60.740 63.158 0.00 0.00 0.00 3.35
2597 7657 0.459237 CTAGGCTTGCACGGAGACAG 60.459 60.000 0.00 0.00 0.00 3.51
2598 7658 1.591703 CTAGGCTTGCACGGAGACA 59.408 57.895 0.00 0.00 0.00 3.41
2599 7659 1.153549 CCTAGGCTTGCACGGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
2601 7661 2.187946 CCCTAGGCTTGCACGGAG 59.812 66.667 2.05 0.00 0.00 4.63
2602 7662 3.399181 CCCCTAGGCTTGCACGGA 61.399 66.667 2.05 0.00 0.00 4.69
2612 7672 3.201266 TGTATACAAACAAGCCCCCTAGG 59.799 47.826 2.20 0.06 39.47 3.02
2613 7673 4.497291 TGTATACAAACAAGCCCCCTAG 57.503 45.455 2.20 0.00 0.00 3.02
2614 7674 4.931027 TTGTATACAAACAAGCCCCCTA 57.069 40.909 15.92 0.00 34.50 3.53
2615 7675 3.818295 TTGTATACAAACAAGCCCCCT 57.182 42.857 15.92 0.00 34.50 4.79
2622 7682 5.309638 TGCTACAGGCTTGTATACAAACAA 58.690 37.500 18.55 0.00 39.00 2.83
2623 7683 4.900684 TGCTACAGGCTTGTATACAAACA 58.099 39.130 18.55 0.00 39.00 2.83
2624 7684 5.584649 TCATGCTACAGGCTTGTATACAAAC 59.415 40.000 18.55 14.23 43.71 2.93
2625 7685 5.739959 TCATGCTACAGGCTTGTATACAAA 58.260 37.500 18.55 2.83 43.71 2.83
2626 7686 5.351948 TCATGCTACAGGCTTGTATACAA 57.648 39.130 17.16 17.16 43.71 2.41
2627 7687 5.104941 ACTTCATGCTACAGGCTTGTATACA 60.105 40.000 9.35 11.11 43.71 2.29
2628 7688 5.360591 ACTTCATGCTACAGGCTTGTATAC 58.639 41.667 9.35 5.75 43.71 1.47
2629 7689 5.614324 ACTTCATGCTACAGGCTTGTATA 57.386 39.130 9.35 2.55 43.71 1.47
2630 7690 4.494091 ACTTCATGCTACAGGCTTGTAT 57.506 40.909 9.35 0.00 43.71 2.29
2631 7691 3.981071 ACTTCATGCTACAGGCTTGTA 57.019 42.857 8.55 8.55 43.71 2.41
2632 7692 2.816087 CAACTTCATGCTACAGGCTTGT 59.184 45.455 6.72 6.72 43.71 3.16
2633 7693 2.816087 ACAACTTCATGCTACAGGCTTG 59.184 45.455 0.00 0.00 44.36 4.01
2634 7694 3.146104 ACAACTTCATGCTACAGGCTT 57.854 42.857 0.00 0.00 42.39 4.35
2635 7695 2.867109 ACAACTTCATGCTACAGGCT 57.133 45.000 0.00 0.00 42.39 4.58
2636 7696 2.352960 GCTACAACTTCATGCTACAGGC 59.647 50.000 0.00 0.00 42.22 4.85
2637 7697 3.866651 AGCTACAACTTCATGCTACAGG 58.133 45.455 0.00 0.00 31.71 4.00
2638 7698 6.333416 TCTTAGCTACAACTTCATGCTACAG 58.667 40.000 0.00 0.00 36.19 2.74
2639 7699 6.071334 ACTCTTAGCTACAACTTCATGCTACA 60.071 38.462 0.00 0.00 36.19 2.74
2640 7700 6.254589 CACTCTTAGCTACAACTTCATGCTAC 59.745 42.308 0.00 0.00 36.19 3.58
2641 7701 6.333416 CACTCTTAGCTACAACTTCATGCTA 58.667 40.000 0.00 0.00 35.47 3.49
2642 7702 5.174395 CACTCTTAGCTACAACTTCATGCT 58.826 41.667 0.00 0.00 37.72 3.79
2643 7703 4.201763 GCACTCTTAGCTACAACTTCATGC 60.202 45.833 0.00 0.00 0.00 4.06
2644 7704 5.174395 AGCACTCTTAGCTACAACTTCATG 58.826 41.667 0.00 0.00 41.32 3.07
2645 7705 5.413309 AGCACTCTTAGCTACAACTTCAT 57.587 39.130 0.00 0.00 41.32 2.57
2646 7706 4.873746 AGCACTCTTAGCTACAACTTCA 57.126 40.909 0.00 0.00 41.32 3.02
2647 7707 5.347364 CAGAAGCACTCTTAGCTACAACTTC 59.653 44.000 0.00 1.85 42.53 3.01
2648 7708 5.233988 CAGAAGCACTCTTAGCTACAACTT 58.766 41.667 0.00 0.00 42.53 2.66
2649 7709 4.322349 CCAGAAGCACTCTTAGCTACAACT 60.322 45.833 0.00 0.00 42.53 3.16
2650 7710 3.929610 CCAGAAGCACTCTTAGCTACAAC 59.070 47.826 0.00 0.00 42.53 3.32
2651 7711 3.832490 TCCAGAAGCACTCTTAGCTACAA 59.168 43.478 0.00 0.00 42.53 2.41
2652 7712 3.431415 TCCAGAAGCACTCTTAGCTACA 58.569 45.455 0.00 0.00 42.53 2.74
2653 7713 4.664150 ATCCAGAAGCACTCTTAGCTAC 57.336 45.455 0.00 0.00 42.53 3.58
2654 7714 4.467795 ACAATCCAGAAGCACTCTTAGCTA 59.532 41.667 0.00 0.00 42.53 3.32
2655 7715 3.262915 ACAATCCAGAAGCACTCTTAGCT 59.737 43.478 0.00 0.00 45.97 3.32
2656 7716 3.373439 CACAATCCAGAAGCACTCTTAGC 59.627 47.826 0.00 0.00 31.48 3.09
2657 7717 3.937706 CCACAATCCAGAAGCACTCTTAG 59.062 47.826 0.00 0.00 31.48 2.18
2658 7718 3.327757 ACCACAATCCAGAAGCACTCTTA 59.672 43.478 0.00 0.00 31.48 2.10
2659 7719 2.107204 ACCACAATCCAGAAGCACTCTT 59.893 45.455 0.00 0.00 34.68 2.85
2660 7720 1.701847 ACCACAATCCAGAAGCACTCT 59.298 47.619 0.00 0.00 33.23 3.24
2661 7721 2.079925 GACCACAATCCAGAAGCACTC 58.920 52.381 0.00 0.00 0.00 3.51
2662 7722 1.609061 CGACCACAATCCAGAAGCACT 60.609 52.381 0.00 0.00 0.00 4.40
2663 7723 0.798776 CGACCACAATCCAGAAGCAC 59.201 55.000 0.00 0.00 0.00 4.40
2664 7724 0.396435 ACGACCACAATCCAGAAGCA 59.604 50.000 0.00 0.00 0.00 3.91
2665 7725 0.798776 CACGACCACAATCCAGAAGC 59.201 55.000 0.00 0.00 0.00 3.86
2666 7726 0.798776 GCACGACCACAATCCAGAAG 59.201 55.000 0.00 0.00 0.00 2.85
2667 7727 0.107643 TGCACGACCACAATCCAGAA 59.892 50.000 0.00 0.00 0.00 3.02
2668 7728 0.107643 TTGCACGACCACAATCCAGA 59.892 50.000 0.00 0.00 0.00 3.86
2669 7729 1.167851 ATTGCACGACCACAATCCAG 58.832 50.000 0.00 0.00 30.81 3.86
2670 7730 1.614996 AATTGCACGACCACAATCCA 58.385 45.000 0.00 0.00 35.49 3.41
2671 7731 2.030363 TGAAATTGCACGACCACAATCC 60.030 45.455 0.00 0.00 35.49 3.01
2672 7732 3.281341 TGAAATTGCACGACCACAATC 57.719 42.857 0.00 0.00 35.49 2.67
2673 7733 3.255395 TCATGAAATTGCACGACCACAAT 59.745 39.130 0.00 0.00 38.11 2.71
2674 7734 2.620585 TCATGAAATTGCACGACCACAA 59.379 40.909 0.00 0.00 0.00 3.33
2675 7735 2.225467 TCATGAAATTGCACGACCACA 58.775 42.857 0.00 0.00 0.00 4.17
2676 7736 2.979813 GTTCATGAAATTGCACGACCAC 59.020 45.455 10.35 0.00 0.00 4.16
2677 7737 2.884012 AGTTCATGAAATTGCACGACCA 59.116 40.909 10.35 0.00 0.00 4.02
2678 7738 3.236816 CAGTTCATGAAATTGCACGACC 58.763 45.455 10.35 0.00 0.00 4.79
2679 7739 3.665409 CACAGTTCATGAAATTGCACGAC 59.335 43.478 10.35 0.00 0.00 4.34
2680 7740 3.563390 TCACAGTTCATGAAATTGCACGA 59.437 39.130 10.35 7.01 0.00 4.35
2681 7741 3.887741 TCACAGTTCATGAAATTGCACG 58.112 40.909 10.35 0.00 0.00 5.34
2682 7742 5.463286 TGATCACAGTTCATGAAATTGCAC 58.537 37.500 10.35 0.00 0.00 4.57
2683 7743 5.705902 CTGATCACAGTTCATGAAATTGCA 58.294 37.500 10.35 3.27 39.11 4.08
2684 7744 4.561606 GCTGATCACAGTTCATGAAATTGC 59.438 41.667 10.35 5.24 45.04 3.56
2685 7745 4.791676 CGCTGATCACAGTTCATGAAATTG 59.208 41.667 10.35 13.83 45.04 2.32
2686 7746 4.142534 CCGCTGATCACAGTTCATGAAATT 60.143 41.667 10.35 0.00 45.04 1.82
2687 7747 3.376234 CCGCTGATCACAGTTCATGAAAT 59.624 43.478 10.35 6.06 45.04 2.17
2688 7748 2.743664 CCGCTGATCACAGTTCATGAAA 59.256 45.455 10.35 0.00 45.04 2.69
2689 7749 2.349590 CCGCTGATCACAGTTCATGAA 58.650 47.619 3.38 3.38 45.04 2.57
2690 7750 2.008543 GCCGCTGATCACAGTTCATGA 61.009 52.381 0.00 0.00 45.04 3.07
2691 7751 0.376152 GCCGCTGATCACAGTTCATG 59.624 55.000 0.00 0.00 45.04 3.07
2692 7752 0.036105 TGCCGCTGATCACAGTTCAT 60.036 50.000 0.00 0.00 45.04 2.57
2693 7753 0.671472 CTGCCGCTGATCACAGTTCA 60.671 55.000 0.00 0.00 45.04 3.18
2694 7754 1.975363 GCTGCCGCTGATCACAGTTC 61.975 60.000 11.45 0.00 45.04 3.01
2695 7755 2.037136 GCTGCCGCTGATCACAGTT 61.037 57.895 11.45 0.00 45.04 3.16
2696 7756 2.435586 GCTGCCGCTGATCACAGT 60.436 61.111 11.45 0.00 45.04 3.55
2697 7757 3.561213 CGCTGCCGCTGATCACAG 61.561 66.667 6.68 6.68 45.91 3.66
2698 7758 3.881952 AACGCTGCCGCTGATCACA 62.882 57.895 0.73 0.00 38.22 3.58
2699 7759 3.121030 AACGCTGCCGCTGATCAC 61.121 61.111 0.73 0.00 38.22 3.06
2700 7760 3.120385 CAACGCTGCCGCTGATCA 61.120 61.111 0.73 0.00 38.22 2.92
2701 7761 4.527157 GCAACGCTGCCGCTGATC 62.527 66.667 0.00 0.00 43.26 2.92
2718 7778 1.002087 ACTGGGTTCTCGCTGGTTTAG 59.998 52.381 0.00 0.00 0.00 1.85
2719 7779 1.053424 ACTGGGTTCTCGCTGGTTTA 58.947 50.000 0.00 0.00 0.00 2.01
2720 7780 0.182775 AACTGGGTTCTCGCTGGTTT 59.817 50.000 0.00 0.00 0.00 3.27
2721 7781 0.250338 GAACTGGGTTCTCGCTGGTT 60.250 55.000 3.50 0.00 39.23 3.67
2722 7782 1.371558 GAACTGGGTTCTCGCTGGT 59.628 57.895 3.50 0.00 39.23 4.00
2723 7783 1.738099 CGAACTGGGTTCTCGCTGG 60.738 63.158 8.46 0.00 40.05 4.85
2724 7784 1.738099 CCGAACTGGGTTCTCGCTG 60.738 63.158 8.46 0.00 40.05 5.18
2725 7785 1.258445 ATCCGAACTGGGTTCTCGCT 61.258 55.000 8.46 0.00 40.05 4.93
2726 7786 1.084370 CATCCGAACTGGGTTCTCGC 61.084 60.000 8.46 0.00 40.05 5.03
2727 7787 0.246635 ACATCCGAACTGGGTTCTCG 59.753 55.000 8.46 0.00 40.05 4.04
2728 7788 1.002087 ACACATCCGAACTGGGTTCTC 59.998 52.381 8.46 0.00 40.05 2.87
2729 7789 1.056660 ACACATCCGAACTGGGTTCT 58.943 50.000 8.46 0.00 40.05 3.01
2730 7790 1.892209 AACACATCCGAACTGGGTTC 58.108 50.000 0.82 0.82 35.33 3.62
2731 7791 1.953686 CAAACACATCCGAACTGGGTT 59.046 47.619 0.00 0.00 41.89 4.11
2732 7792 1.604604 CAAACACATCCGAACTGGGT 58.395 50.000 0.00 0.00 38.76 4.51
2733 7793 0.881118 CCAAACACATCCGAACTGGG 59.119 55.000 0.00 0.00 38.76 4.45
2734 7794 1.604604 ACCAAACACATCCGAACTGG 58.395 50.000 0.00 0.00 40.09 4.00
2735 7795 2.287547 CCAACCAAACACATCCGAACTG 60.288 50.000 0.00 0.00 0.00 3.16
2736 7796 1.953686 CCAACCAAACACATCCGAACT 59.046 47.619 0.00 0.00 0.00 3.01
2737 7797 1.000717 CCCAACCAAACACATCCGAAC 60.001 52.381 0.00 0.00 0.00 3.95
2738 7798 1.133761 TCCCAACCAAACACATCCGAA 60.134 47.619 0.00 0.00 0.00 4.30
2739 7799 0.474614 TCCCAACCAAACACATCCGA 59.525 50.000 0.00 0.00 0.00 4.55
2740 7800 1.323412 TTCCCAACCAAACACATCCG 58.677 50.000 0.00 0.00 0.00 4.18
2741 7801 3.494223 CCTTTTCCCAACCAAACACATCC 60.494 47.826 0.00 0.00 0.00 3.51
2742 7802 3.727726 CCTTTTCCCAACCAAACACATC 58.272 45.455 0.00 0.00 0.00 3.06
2743 7803 2.158827 GCCTTTTCCCAACCAAACACAT 60.159 45.455 0.00 0.00 0.00 3.21
2744 7804 1.208293 GCCTTTTCCCAACCAAACACA 59.792 47.619 0.00 0.00 0.00 3.72
2745 7805 1.804746 CGCCTTTTCCCAACCAAACAC 60.805 52.381 0.00 0.00 0.00 3.32
2746 7806 0.461961 CGCCTTTTCCCAACCAAACA 59.538 50.000 0.00 0.00 0.00 2.83
2747 7807 0.878523 GCGCCTTTTCCCAACCAAAC 60.879 55.000 0.00 0.00 0.00 2.93
2748 7808 1.330655 TGCGCCTTTTCCCAACCAAA 61.331 50.000 4.18 0.00 0.00 3.28
2749 7809 1.743321 CTGCGCCTTTTCCCAACCAA 61.743 55.000 4.18 0.00 0.00 3.67
2750 7810 2.123683 TGCGCCTTTTCCCAACCA 60.124 55.556 4.18 0.00 0.00 3.67
2751 7811 2.650778 CTGCGCCTTTTCCCAACC 59.349 61.111 4.18 0.00 0.00 3.77
2752 7812 2.049156 GCTGCGCCTTTTCCCAAC 60.049 61.111 4.18 0.00 0.00 3.77
2753 7813 3.669344 CGCTGCGCCTTTTCCCAA 61.669 61.111 9.88 0.00 0.00 4.12
2757 7817 4.766088 CTGCCGCTGCGCCTTTTC 62.766 66.667 18.00 1.44 41.78 2.29
2766 7826 2.271607 TAAGAGAGACGCTGCCGCTG 62.272 60.000 0.00 0.00 38.22 5.18
2767 7827 1.388065 ATAAGAGAGACGCTGCCGCT 61.388 55.000 0.00 0.00 38.22 5.52
2768 7828 0.937231 GATAAGAGAGACGCTGCCGC 60.937 60.000 0.00 0.00 38.22 6.53
2769 7829 0.658829 CGATAAGAGAGACGCTGCCG 60.659 60.000 0.00 0.00 41.14 5.69
2770 7830 0.663688 TCGATAAGAGAGACGCTGCC 59.336 55.000 0.00 0.00 0.00 4.85
2780 7840 1.604755 CGTCCAGGACCTCGATAAGAG 59.395 57.143 14.46 0.00 46.44 2.85
2781 7841 1.676746 CGTCCAGGACCTCGATAAGA 58.323 55.000 14.46 0.00 0.00 2.10
2782 7842 0.030908 GCGTCCAGGACCTCGATAAG 59.969 60.000 14.46 0.00 0.00 1.73
2783 7843 1.389609 GGCGTCCAGGACCTCGATAA 61.390 60.000 14.46 0.00 0.00 1.75
2784 7844 1.826921 GGCGTCCAGGACCTCGATA 60.827 63.158 14.46 0.00 0.00 2.92
2785 7845 3.148279 GGCGTCCAGGACCTCGAT 61.148 66.667 14.46 0.00 0.00 3.59
2786 7846 3.881019 AAGGCGTCCAGGACCTCGA 62.881 63.158 14.46 0.00 31.86 4.04
2787 7847 3.382832 AAGGCGTCCAGGACCTCG 61.383 66.667 14.46 3.67 31.86 4.63
2788 7848 2.266055 CAAGGCGTCCAGGACCTC 59.734 66.667 14.46 6.38 31.86 3.85
2789 7849 4.021925 GCAAGGCGTCCAGGACCT 62.022 66.667 14.46 3.15 34.45 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.