Multiple sequence alignment - TraesCS1D01G109300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G109300 chr1D 100.000 5405 0 0 1 5405 102778343 102772939 0.000000e+00 9982.0
1 TraesCS1D01G109300 chr1B 97.005 4074 74 11 444 4503 158313644 158309605 0.000000e+00 6804.0
2 TraesCS1D01G109300 chr1B 88.478 946 46 22 4488 5405 158309589 158308679 0.000000e+00 1085.0
3 TraesCS1D01G109300 chr1B 95.475 442 18 2 1 442 158314116 158313677 0.000000e+00 704.0
4 TraesCS1D01G109300 chr1A 96.441 2501 62 12 444 2939 102164247 102166725 0.000000e+00 4100.0
5 TraesCS1D01G109300 chr1A 91.584 2507 101 31 2933 5405 102168852 102171282 0.000000e+00 3360.0
6 TraesCS1D01G109300 chr1A 92.431 436 29 3 7 442 102163783 102164214 2.140000e-173 619.0
7 TraesCS1D01G109300 chr5B 79.926 269 31 15 3205 3463 278011328 278011583 5.560000e-40 176.0
8 TraesCS1D01G109300 chr5D 90.840 131 7 1 5150 5280 477298169 477298294 2.590000e-38 171.0
9 TraesCS1D01G109300 chr7A 86.885 61 8 0 3365 3425 70830399 70830339 9.710000e-08 69.4
10 TraesCS1D01G109300 chr4D 100.000 32 0 0 3205 3236 49939305 49939274 5.850000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G109300 chr1D 102772939 102778343 5404 True 9982.000000 9982 100.000000 1 5405 1 chr1D.!!$R1 5404
1 TraesCS1D01G109300 chr1B 158308679 158314116 5437 True 2864.333333 6804 93.652667 1 5405 3 chr1B.!!$R1 5404
2 TraesCS1D01G109300 chr1A 102163783 102171282 7499 False 2693.000000 4100 93.485333 7 5405 3 chr1A.!!$F1 5398

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 1.008079 GTGCTGTGCTTTGCTGGTC 60.008 57.895 0.00 0.00 0.00 4.02 F
1432 1468 0.394352 ATTGCACATTCTCCCCGTCC 60.394 55.000 0.00 0.00 0.00 4.79 F
2544 2582 1.133262 AGGCTGCATATTGGCAATCCT 60.133 47.619 17.41 12.74 44.40 3.24 F
3480 5676 1.116536 TTCGGTACTGACCCTGCACA 61.117 55.000 3.16 0.00 43.64 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1471 0.696501 TTCTGAAGGGTAAGGGCCAC 59.303 55.000 6.18 0.0 0.00 5.01 R
2586 2624 1.822990 GGATACACCACCTCGAAGTCA 59.177 52.381 0.00 0.0 38.79 3.41 R
4374 6573 0.178767 TCTTCATCGGGACCAGCATG 59.821 55.000 0.00 0.0 0.00 4.06 R
5288 7558 0.249868 TTGCCGGATGGATCATCGAC 60.250 55.000 5.05 0.0 41.35 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.308438 AACAAAGTCATGGCTGAATGC 57.692 42.857 0.00 0.00 41.94 3.56
114 115 1.008079 GTGCTGTGCTTTGCTGGTC 60.008 57.895 0.00 0.00 0.00 4.02
234 235 1.557832 TGGTTTAGCTAGCCACGGATT 59.442 47.619 12.13 0.00 0.00 3.01
259 260 4.377022 GCGAGTTACACATGTTCGAATTGT 60.377 41.667 18.45 5.99 33.38 2.71
265 266 2.162208 CACATGTTCGAATTGTCCTGGG 59.838 50.000 12.24 0.00 0.00 4.45
286 287 4.081697 GGGTTGGCAGTTACAATTATTGCT 60.082 41.667 4.68 0.00 35.23 3.91
367 368 3.607422 TTTCTGTCATCGCACTGTTTG 57.393 42.857 0.00 0.00 0.00 2.93
394 395 2.305635 GTTTTGGGATGGGATTTTGCCT 59.694 45.455 0.00 0.00 0.00 4.75
416 417 5.220970 CCTTATGTTTGTTTGGGGTATAGCG 60.221 44.000 0.00 0.00 0.00 4.26
442 443 4.223923 TCACTTGTTTCCCAATGGTTTTGT 59.776 37.500 0.00 0.00 31.20 2.83
536 568 7.095102 GCTGTCAATTTTGCAATTACCAATTCT 60.095 33.333 0.00 0.00 30.90 2.40
851 886 6.972328 TCAATTTTTATTACCAAGCGATGCTC 59.028 34.615 0.00 0.00 38.25 4.26
856 891 3.819564 TTACCAAGCGATGCTCATAGT 57.180 42.857 0.00 0.00 38.25 2.12
1137 1172 6.442513 AATTAAGTGATAAGTCTTGCTGGC 57.557 37.500 0.00 0.00 0.00 4.85
1155 1190 4.260948 GCTGGCTGAGTTGCATAGTTAATC 60.261 45.833 0.00 0.00 34.04 1.75
1431 1467 1.017387 GATTGCACATTCTCCCCGTC 58.983 55.000 0.00 0.00 0.00 4.79
1432 1468 0.394352 ATTGCACATTCTCCCCGTCC 60.394 55.000 0.00 0.00 0.00 4.79
1433 1469 2.124695 GCACATTCTCCCCGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
1434 1470 2.590092 CACATTCTCCCCGTCCCC 59.410 66.667 0.00 0.00 0.00 4.81
1435 1471 3.081409 ACATTCTCCCCGTCCCCG 61.081 66.667 0.00 0.00 0.00 5.73
1436 1472 3.081409 CATTCTCCCCGTCCCCGT 61.081 66.667 0.00 0.00 0.00 5.28
1522 1558 1.546029 TGCTAAGACTGCTGACATCGT 59.454 47.619 0.00 0.00 0.00 3.73
1706 1742 5.684704 TGGAATCCATCTCTACAATCAACC 58.315 41.667 0.00 0.00 0.00 3.77
1958 1994 4.458397 CTTATGCCTGTCATTCCATCTGT 58.542 43.478 0.00 0.00 36.63 3.41
1959 1995 2.885135 TGCCTGTCATTCCATCTGTT 57.115 45.000 0.00 0.00 0.00 3.16
1960 1996 2.439409 TGCCTGTCATTCCATCTGTTG 58.561 47.619 0.00 0.00 0.00 3.33
1961 1997 2.224843 TGCCTGTCATTCCATCTGTTGT 60.225 45.455 0.00 0.00 0.00 3.32
1962 1998 3.008923 TGCCTGTCATTCCATCTGTTGTA 59.991 43.478 0.00 0.00 0.00 2.41
1963 1999 4.009675 GCCTGTCATTCCATCTGTTGTAA 58.990 43.478 0.00 0.00 0.00 2.41
1964 2000 4.142600 GCCTGTCATTCCATCTGTTGTAAC 60.143 45.833 0.00 0.00 0.00 2.50
2199 2235 3.295093 TCCAAACCTCTGTTTTCATGCA 58.705 40.909 0.00 0.00 41.92 3.96
2493 2531 1.737008 GCCAAGAGGTTCGACGTCC 60.737 63.158 10.58 0.00 33.78 4.79
2544 2582 1.133262 AGGCTGCATATTGGCAATCCT 60.133 47.619 17.41 12.74 44.40 3.24
2718 2756 2.015736 ACAAGAAGCTGGATAGTGCG 57.984 50.000 0.00 0.00 0.00 5.34
2869 2907 6.623486 TGAATGCTGAACCTAAATCATTGTG 58.377 36.000 0.00 0.00 0.00 3.33
2940 5111 6.337356 GTTGGTCCTGTTGATTTTCAAAAGA 58.663 36.000 8.66 0.00 42.89 2.52
3271 5466 6.662414 AGCTTTTTAAAGTTTTGACCAAGC 57.338 33.333 7.17 7.17 38.28 4.01
3480 5676 1.116536 TTCGGTACTGACCCTGCACA 61.117 55.000 3.16 0.00 43.64 4.57
3580 5776 8.459911 TGCTGTTATCATCAATGAGAATTCAT 57.540 30.769 8.44 0.00 45.92 2.57
3690 5886 5.683876 ACTTGCAGATACACTATGTTCCT 57.316 39.130 0.00 0.00 0.00 3.36
3757 5953 1.135859 GTCTGCTTGATTGCTTCACGG 60.136 52.381 0.00 0.00 32.84 4.94
3854 6050 1.908299 TCCCGAAGCTGTCTCTGCA 60.908 57.895 0.00 0.00 0.00 4.41
3998 6194 3.317406 TGGCTAGATATTCTGCCAAGGA 58.683 45.455 14.26 0.00 42.96 3.36
4144 6340 1.352083 CTGGGAGGAGGTTGAAGTCA 58.648 55.000 0.00 0.00 0.00 3.41
4165 6361 1.318576 CCTGGTTGAAAAAGACCGCT 58.681 50.000 0.00 0.00 38.81 5.52
4212 6408 3.618507 CGAAAGCACCTGAAGAGAATCCT 60.619 47.826 0.00 0.00 33.66 3.24
4374 6573 0.527565 ATGTTCTGCGCATTGGTTCC 59.472 50.000 12.24 0.00 0.00 3.62
4465 6664 0.830648 TTGCTCGTTGATAGGAGGGG 59.169 55.000 0.00 0.00 36.90 4.79
4565 6803 3.080319 GAGAGGCTTTCATGCTTTCAGT 58.920 45.455 0.00 0.00 0.00 3.41
4602 6840 0.818296 CGGTCTACCAACTCTCTGGG 59.182 60.000 0.00 0.00 41.16 4.45
4716 6957 6.633500 TGGTAATGTGCTGCTATTTATTCC 57.367 37.500 0.00 4.54 0.00 3.01
4717 6958 6.364701 TGGTAATGTGCTGCTATTTATTCCT 58.635 36.000 0.00 0.00 0.00 3.36
4718 6959 6.262944 TGGTAATGTGCTGCTATTTATTCCTG 59.737 38.462 0.00 0.00 0.00 3.86
4719 6960 4.843220 ATGTGCTGCTATTTATTCCTGC 57.157 40.909 0.00 0.00 0.00 4.85
4720 6961 3.889815 TGTGCTGCTATTTATTCCTGCT 58.110 40.909 0.00 0.00 0.00 4.24
4721 6962 4.272489 TGTGCTGCTATTTATTCCTGCTT 58.728 39.130 0.00 0.00 0.00 3.91
4722 6963 4.706476 TGTGCTGCTATTTATTCCTGCTTT 59.294 37.500 0.00 0.00 0.00 3.51
4723 6964 5.185635 TGTGCTGCTATTTATTCCTGCTTTT 59.814 36.000 0.00 0.00 0.00 2.27
4724 6965 6.101997 GTGCTGCTATTTATTCCTGCTTTTT 58.898 36.000 0.00 0.00 0.00 1.94
4781 7022 8.156820 AGGTTTTTCCCAGGAAATTTATTTCAG 58.843 33.333 12.50 8.15 42.71 3.02
4853 7113 2.206576 ATCCTTGAGTTCTGTTGGGC 57.793 50.000 0.00 0.00 0.00 5.36
4883 7143 0.108019 TGCATCATGGAGCTAGCTGG 59.892 55.000 24.99 8.94 0.00 4.85
4948 7208 6.857777 ACAATATTAAGTCTGCATGCTCTC 57.142 37.500 20.33 8.72 0.00 3.20
4949 7209 5.762218 ACAATATTAAGTCTGCATGCTCTCC 59.238 40.000 20.33 4.22 0.00 3.71
4955 7215 0.467384 TCTGCATGCTCTCCTAAGGC 59.533 55.000 20.33 0.00 0.00 4.35
4997 7257 5.717078 AAAGATGCAGCATTCTCTTTTCA 57.283 34.783 9.90 0.00 35.06 2.69
5239 7505 1.005294 CATTTGCAGGCACGAACAGC 61.005 55.000 0.00 0.00 0.00 4.40
5240 7506 1.454572 ATTTGCAGGCACGAACAGCA 61.455 50.000 0.00 0.00 0.00 4.41
5241 7507 2.062361 TTTGCAGGCACGAACAGCAG 62.062 55.000 0.00 0.00 36.47 4.24
5242 7508 2.666190 GCAGGCACGAACAGCAGA 60.666 61.111 0.00 0.00 0.00 4.26
5243 7509 2.675056 GCAGGCACGAACAGCAGAG 61.675 63.158 0.00 0.00 0.00 3.35
5244 7510 2.358003 AGGCACGAACAGCAGAGC 60.358 61.111 0.00 0.00 0.00 4.09
5245 7511 2.358003 GGCACGAACAGCAGAGCT 60.358 61.111 0.00 0.00 40.77 4.09
5246 7512 1.963338 GGCACGAACAGCAGAGCTT 60.963 57.895 0.00 0.00 36.40 3.74
5247 7513 1.510480 GGCACGAACAGCAGAGCTTT 61.510 55.000 0.00 0.00 36.40 3.51
5248 7514 0.110464 GCACGAACAGCAGAGCTTTC 60.110 55.000 0.00 0.00 36.40 2.62
5249 7515 1.220529 CACGAACAGCAGAGCTTTCA 58.779 50.000 0.00 0.00 36.40 2.69
5250 7516 1.802960 CACGAACAGCAGAGCTTTCAT 59.197 47.619 0.00 0.00 36.40 2.57
5282 7548 3.258372 TGCTAACGAACTGGACTGAGATT 59.742 43.478 0.00 0.00 0.00 2.40
5288 7558 3.539604 GAACTGGACTGAGATTGATGGG 58.460 50.000 0.00 0.00 0.00 4.00
5312 7582 1.451927 GATCCATCCGGCAAGCACA 60.452 57.895 0.00 0.00 0.00 4.57
5373 7643 8.778059 AGGTTAATGAATTATCTGGTCAGGTTA 58.222 33.333 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.484641 TGACTTTGTTATTGCAAAATTGACAA 57.515 26.923 1.71 3.91 37.82 3.18
80 81 2.034124 AGCACACCAAACATTCAGCTT 58.966 42.857 0.00 0.00 0.00 3.74
114 115 2.711311 CATGCATCGAACCAGCCG 59.289 61.111 0.00 0.00 0.00 5.52
206 207 2.872858 GGCTAGCTAAACCACATGCTAC 59.127 50.000 15.72 0.00 37.02 3.58
234 235 1.000052 TCGAACATGTGTAACTCGCCA 60.000 47.619 11.17 0.00 38.04 5.69
259 260 0.847373 TTGTAACTGCCAACCCAGGA 59.153 50.000 0.00 0.00 37.16 3.86
265 266 7.254084 GCAATAGCAATAATTGTAACTGCCAAC 60.254 37.037 0.00 0.00 41.58 3.77
286 287 3.119531 GCCATGCAACTACACAAGCAATA 60.120 43.478 0.00 0.00 40.76 1.90
394 395 5.254901 ACGCTATACCCCAAACAAACATAA 58.745 37.500 0.00 0.00 0.00 1.90
416 417 4.400529 ACCATTGGGAAACAAGTGAAAC 57.599 40.909 7.78 0.00 43.48 2.78
442 443 9.137459 TCCATCCATTAAAAGTAAAACAGAACA 57.863 29.630 0.00 0.00 0.00 3.18
536 568 3.221771 AGCACACCAAACATTCAGCTAA 58.778 40.909 0.00 0.00 0.00 3.09
851 886 6.094048 AGTTCCAACATTCCGAATCAACTATG 59.906 38.462 0.00 0.00 0.00 2.23
856 891 4.141287 ACAGTTCCAACATTCCGAATCAA 58.859 39.130 0.00 0.00 0.00 2.57
895 930 5.119125 GCAAAATGGCTTCTGAACATACAAC 59.881 40.000 0.00 0.00 0.00 3.32
1059 1094 3.093814 TGGAGTCGGATAGTAAGTTGCA 58.906 45.455 0.00 0.00 0.00 4.08
1137 1172 9.926751 CATTAAGTGATTAACTATGCAACTCAG 57.073 33.333 0.00 0.00 38.56 3.35
1432 1468 3.335729 AAGGGTAAGGGCCACGGG 61.336 66.667 6.18 0.00 0.00 5.28
1433 1469 2.271173 GAAGGGTAAGGGCCACGG 59.729 66.667 6.18 0.00 0.00 4.94
1434 1470 1.078426 CTGAAGGGTAAGGGCCACG 60.078 63.158 6.18 0.00 0.00 4.94
1435 1471 0.696501 TTCTGAAGGGTAAGGGCCAC 59.303 55.000 6.18 0.00 0.00 5.01
1436 1472 0.696501 GTTCTGAAGGGTAAGGGCCA 59.303 55.000 6.18 0.00 0.00 5.36
1522 1558 1.072266 AGGAACTGGTTGGTGGCATA 58.928 50.000 0.00 0.00 37.18 3.14
1958 1994 9.650539 TTGTACAGTTGTACTTACAAGTTACAA 57.349 29.630 22.07 22.07 44.94 2.41
1959 1995 9.304731 CTTGTACAGTTGTACTTACAAGTTACA 57.695 33.333 19.75 17.21 44.94 2.41
1960 1996 8.271487 GCTTGTACAGTTGTACTTACAAGTTAC 58.729 37.037 23.63 15.13 44.94 2.50
1961 1997 8.199449 AGCTTGTACAGTTGTACTTACAAGTTA 58.801 33.333 23.63 7.93 44.94 2.24
1962 1998 7.046033 AGCTTGTACAGTTGTACTTACAAGTT 58.954 34.615 23.63 20.00 44.94 2.66
2493 2531 4.521146 AGGATGTGGCAACTATTTCTGAG 58.479 43.478 0.00 0.00 37.61 3.35
2544 2582 6.830324 CAGTCTTAATGATGATTTTCCCCTCA 59.170 38.462 0.00 0.00 0.00 3.86
2586 2624 1.822990 GGATACACCACCTCGAAGTCA 59.177 52.381 0.00 0.00 38.79 3.41
2718 2756 7.574496 CAGCTATCATTTGAGCATCTCTAAAC 58.426 38.462 0.00 0.00 41.36 2.01
2869 2907 5.472137 TGGTTACTTTCATTGACCTGTTAGC 59.528 40.000 0.00 0.00 0.00 3.09
2940 5111 2.564062 CCATGCTCCAAAAGTCCATGTT 59.436 45.455 0.00 0.00 0.00 2.71
3271 5466 9.593134 TTCTAGAGCTTAGCAGATTTTTCTAAG 57.407 33.333 7.07 0.00 41.14 2.18
3427 5622 9.503427 CTCCGTTCCAAAATAATTGAATTCTAC 57.497 33.333 7.05 0.00 0.00 2.59
3480 5676 4.782019 TCTGTTTGTTTGTGAAAGCAGT 57.218 36.364 0.00 0.00 0.00 4.40
3581 5777 8.458843 GCTTAAAACAAAGCTATCCAGTCAATA 58.541 33.333 1.45 0.00 46.74 1.90
3582 5778 7.315890 GCTTAAAACAAAGCTATCCAGTCAAT 58.684 34.615 1.45 0.00 46.74 2.57
3583 5779 6.677913 GCTTAAAACAAAGCTATCCAGTCAA 58.322 36.000 1.45 0.00 46.74 3.18
3584 5780 6.254281 GCTTAAAACAAAGCTATCCAGTCA 57.746 37.500 1.45 0.00 46.74 3.41
3690 5886 4.809193 AGATCCTGAGCATACTAGTTCCA 58.191 43.478 0.00 0.00 0.00 3.53
3757 5953 1.291132 GCTTCTTCCGCCTCATACAC 58.709 55.000 0.00 0.00 0.00 2.90
3854 6050 1.515954 CGAGGAACGTAGGCATGGT 59.484 57.895 0.00 0.00 37.22 3.55
3998 6194 3.632145 ACGGTTTTCTTTCTGTGCAGATT 59.368 39.130 2.47 0.00 37.29 2.40
4144 6340 1.687563 CGGTCTTTTTCAACCAGGGT 58.312 50.000 0.00 0.00 35.13 4.34
4165 6361 1.337703 GATGTTGGCAGCAGTTTGTGA 59.662 47.619 10.45 0.00 0.00 3.58
4212 6408 5.705441 CACCAAGGCATTCTTAACTTCAGTA 59.295 40.000 0.00 0.00 33.68 2.74
4374 6573 0.178767 TCTTCATCGGGACCAGCATG 59.821 55.000 0.00 0.00 0.00 4.06
4444 6643 1.202580 CCCTCCTATCAACGAGCAAGG 60.203 57.143 0.00 0.00 0.00 3.61
4465 6664 3.133141 AGTCAGAACCCAAAAGAGAGC 57.867 47.619 0.00 0.00 0.00 4.09
4584 6822 2.233305 TCCCAGAGAGTTGGTAGACC 57.767 55.000 0.00 0.00 36.45 3.85
4602 6840 6.433766 GCATCACTACTTGCATATTTCCTTC 58.566 40.000 0.00 0.00 38.72 3.46
4698 6936 4.467769 AGCAGGAATAAATAGCAGCACAT 58.532 39.130 0.00 0.00 0.00 3.21
4700 6938 4.907879 AAGCAGGAATAAATAGCAGCAC 57.092 40.909 0.00 0.00 0.00 4.40
4721 6962 9.859427 CAACAGGAATAAATAGATGCAGAAAAA 57.141 29.630 0.00 0.00 0.00 1.94
4722 6963 7.975616 GCAACAGGAATAAATAGATGCAGAAAA 59.024 33.333 0.00 0.00 0.00 2.29
4723 6964 7.340232 AGCAACAGGAATAAATAGATGCAGAAA 59.660 33.333 0.00 0.00 33.89 2.52
4724 6965 6.830324 AGCAACAGGAATAAATAGATGCAGAA 59.170 34.615 0.00 0.00 33.89 3.02
4725 6966 6.359804 AGCAACAGGAATAAATAGATGCAGA 58.640 36.000 0.00 0.00 33.89 4.26
4726 6967 6.261603 TGAGCAACAGGAATAAATAGATGCAG 59.738 38.462 0.00 0.00 33.89 4.41
4727 6968 6.121590 TGAGCAACAGGAATAAATAGATGCA 58.878 36.000 0.00 0.00 33.89 3.96
4728 6969 6.624352 TGAGCAACAGGAATAAATAGATGC 57.376 37.500 0.00 0.00 0.00 3.91
4729 6970 8.843262 TCAATGAGCAACAGGAATAAATAGATG 58.157 33.333 0.00 0.00 0.00 2.90
4730 6971 8.985315 TCAATGAGCAACAGGAATAAATAGAT 57.015 30.769 0.00 0.00 0.00 1.98
4731 6972 7.500227 CCTCAATGAGCAACAGGAATAAATAGA 59.500 37.037 4.40 0.00 0.00 1.98
4732 6973 7.284034 ACCTCAATGAGCAACAGGAATAAATAG 59.716 37.037 4.40 0.00 0.00 1.73
4733 6974 7.118723 ACCTCAATGAGCAACAGGAATAAATA 58.881 34.615 4.40 0.00 0.00 1.40
4734 6975 5.954150 ACCTCAATGAGCAACAGGAATAAAT 59.046 36.000 4.40 0.00 0.00 1.40
4735 6976 5.324409 ACCTCAATGAGCAACAGGAATAAA 58.676 37.500 4.40 0.00 0.00 1.40
4736 6977 4.922206 ACCTCAATGAGCAACAGGAATAA 58.078 39.130 4.40 0.00 0.00 1.40
4737 6978 4.574674 ACCTCAATGAGCAACAGGAATA 57.425 40.909 4.40 0.00 0.00 1.75
4738 6979 3.446442 ACCTCAATGAGCAACAGGAAT 57.554 42.857 4.40 0.00 0.00 3.01
4739 6980 2.957402 ACCTCAATGAGCAACAGGAA 57.043 45.000 4.40 0.00 0.00 3.36
4740 6981 2.957402 AACCTCAATGAGCAACAGGA 57.043 45.000 4.40 0.00 0.00 3.86
4741 6982 4.301628 GAAAAACCTCAATGAGCAACAGG 58.698 43.478 4.40 0.00 0.00 4.00
4853 7113 1.469079 CCATGATGCATGCACACACAG 60.469 52.381 25.37 19.54 40.20 3.66
4883 7143 4.414337 ACCTAATCCAAGATCTCACTGC 57.586 45.455 0.00 0.00 0.00 4.40
4948 7208 1.523758 GTGGTTGACACTGCCTTAGG 58.476 55.000 0.00 0.00 46.72 2.69
4997 7257 2.432146 ACGATGATAGACACCAGCACAT 59.568 45.455 0.00 0.00 0.00 3.21
5190 7451 5.047377 CAGGTTTGGTAATTGGTGCTACAAT 60.047 40.000 1.35 1.35 42.56 2.71
5216 7479 1.243342 TTCGTGCCTGCAAATGGGAG 61.243 55.000 0.00 0.00 34.17 4.30
5239 7505 5.125097 AGCACCTAATGAAATGAAAGCTCTG 59.875 40.000 0.00 0.00 0.00 3.35
5240 7506 5.259632 AGCACCTAATGAAATGAAAGCTCT 58.740 37.500 0.00 0.00 0.00 4.09
5241 7507 5.573337 AGCACCTAATGAAATGAAAGCTC 57.427 39.130 0.00 0.00 0.00 4.09
5242 7508 6.403636 CGTTAGCACCTAATGAAATGAAAGCT 60.404 38.462 0.00 0.00 35.62 3.74
5243 7509 5.739161 CGTTAGCACCTAATGAAATGAAAGC 59.261 40.000 0.00 0.00 35.62 3.51
5244 7510 7.072177 TCGTTAGCACCTAATGAAATGAAAG 57.928 36.000 4.82 0.00 38.52 2.62
5245 7511 7.174253 AGTTCGTTAGCACCTAATGAAATGAAA 59.826 33.333 16.79 0.00 46.60 2.69
5246 7512 6.653320 AGTTCGTTAGCACCTAATGAAATGAA 59.347 34.615 16.79 0.22 46.60 2.57
5247 7513 6.170506 AGTTCGTTAGCACCTAATGAAATGA 58.829 36.000 16.79 0.00 46.60 2.57
5248 7514 6.422776 AGTTCGTTAGCACCTAATGAAATG 57.577 37.500 16.79 0.00 46.60 2.32
5249 7515 5.354234 CCAGTTCGTTAGCACCTAATGAAAT 59.646 40.000 16.79 14.28 46.60 2.17
5250 7516 4.693566 CCAGTTCGTTAGCACCTAATGAAA 59.306 41.667 16.79 4.22 46.60 2.69
5288 7558 0.249868 TTGCCGGATGGATCATCGAC 60.250 55.000 5.05 0.00 41.35 4.20
5344 7614 8.210946 CCTGACCAGATAATTCATTAACCTGTA 58.789 37.037 0.00 0.00 0.00 2.74
5345 7615 7.056635 CCTGACCAGATAATTCATTAACCTGT 58.943 38.462 0.00 0.00 0.00 4.00
5373 7643 7.148137 GGATACAATACGACCCAAAACAAAGAT 60.148 37.037 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.