Multiple sequence alignment - TraesCS1D01G107800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G107800 chr1D 100.000 7397 0 0 1 7397 100815400 100822796 0.000000e+00 13660.0
1 TraesCS1D01G107800 chr1D 86.965 537 60 5 3469 4005 376305165 376304639 5.330000e-166 595.0
2 TraesCS1D01G107800 chr1D 85.688 538 61 8 3469 4005 376323339 376322817 3.260000e-153 553.0
3 TraesCS1D01G107800 chr1D 84.701 536 72 4 3470 4005 376320431 376319906 1.970000e-145 527.0
4 TraesCS1D01G107800 chr1D 84.586 532 72 5 3469 4000 376302110 376301589 3.300000e-143 520.0
5 TraesCS1D01G107800 chr1D 100.000 247 0 0 7738 7984 100823137 100823383 2.630000e-124 457.0
6 TraesCS1D01G107800 chr1D 73.670 376 75 22 1 366 260953104 260953465 3.030000e-24 124.0
7 TraesCS1D01G107800 chr1D 91.209 91 6 1 7786 7876 345269173 345269261 1.090000e-23 122.0
8 TraesCS1D01G107800 chr1D 91.228 57 4 1 816 872 318476894 318476839 8.590000e-10 76.8
9 TraesCS1D01G107800 chr1B 94.646 5977 238 36 685 6616 151004582 150998643 0.000000e+00 9190.0
10 TraesCS1D01G107800 chr1B 91.156 735 21 11 6670 7375 150998642 150997923 0.000000e+00 957.0
11 TraesCS1D01G107800 chr1B 85.256 780 108 5 3468 4246 502925986 502925213 0.000000e+00 797.0
12 TraesCS1D01G107800 chr1B 86.592 537 61 7 3469 4005 502845788 502845263 4.150000e-162 582.0
13 TraesCS1D01G107800 chr1B 86.271 539 60 6 3469 4005 502935880 502935354 2.500000e-159 573.0
14 TraesCS1D01G107800 chr1B 83.117 77 4 3 6611 6678 24605013 24605089 2.410000e-05 62.1
15 TraesCS1D01G107800 chr1B 94.595 37 2 0 6642 6678 24605151 24605187 3.110000e-04 58.4
16 TraesCS1D01G107800 chr1A 97.711 4630 95 7 1997 6615 104588101 104583472 0.000000e+00 7952.0
17 TraesCS1D01G107800 chr1A 93.791 757 26 8 979 1718 104590343 104589591 0.000000e+00 1118.0
18 TraesCS1D01G107800 chr1A 92.779 637 29 6 6667 7294 104583473 104582845 0.000000e+00 905.0
19 TraesCS1D01G107800 chr1A 93.077 260 14 1 1747 2006 104589591 104589336 2.100000e-100 377.0
20 TraesCS1D01G107800 chr1A 87.372 293 16 3 619 905 104591240 104590963 4.650000e-82 316.0
21 TraesCS1D01G107800 chr1A 86.869 198 19 4 7773 7965 104582627 104582432 1.750000e-51 215.0
22 TraesCS1D01G107800 chr1A 91.597 119 6 3 7760 7876 444771394 444771278 2.310000e-35 161.0
23 TraesCS1D01G107800 chr1A 89.796 98 8 1 7779 7876 445263869 445263964 3.030000e-24 124.0
24 TraesCS1D01G107800 chr1A 93.333 75 2 2 7323 7397 104582744 104582673 3.050000e-19 108.0
25 TraesCS1D01G107800 chr2D 94.872 507 17 4 1 500 95780449 95779945 0.000000e+00 784.0
26 TraesCS1D01G107800 chr2D 89.062 64 5 2 809 871 567641314 567641376 2.390000e-10 78.7
27 TraesCS1D01G107800 chr5A 90.224 491 40 4 1 484 36771062 36771551 1.130000e-177 634.0
28 TraesCS1D01G107800 chr3D 91.503 459 21 5 1 452 120849778 120849331 4.090000e-172 616.0
29 TraesCS1D01G107800 chr3D 92.683 41 3 0 6614 6654 11288321 11288281 8.650000e-05 60.2
30 TraesCS1D01G107800 chr7A 87.450 502 54 6 1 494 75293628 75293128 3.230000e-158 569.0
31 TraesCS1D01G107800 chr7A 82.278 79 12 2 786 863 668309943 668310020 5.170000e-07 67.6
32 TraesCS1D01G107800 chr7A 100.000 30 0 0 6620 6649 632033285 632033256 1.000000e-03 56.5
33 TraesCS1D01G107800 chr7A 94.286 35 1 1 6614 6648 39313368 39313401 1.400000e-02 52.8
34 TraesCS1D01G107800 chr6A 85.451 488 63 3 1 481 27301373 27300887 1.200000e-137 501.0
35 TraesCS1D01G107800 chr6A 92.857 56 4 0 7927 7982 21513253 21513198 1.850000e-11 82.4
36 TraesCS1D01G107800 chr5D 78.026 760 136 20 2794 3542 538095730 538096469 4.390000e-122 449.0
37 TraesCS1D01G107800 chr5D 77.321 560 89 18 2991 3542 538097009 538096480 6.060000e-76 296.0
38 TraesCS1D01G107800 chr5D 73.653 501 108 20 4 494 3982600 3982114 1.070000e-38 172.0
39 TraesCS1D01G107800 chr5D 97.368 38 1 0 6612 6649 391827700 391827737 1.860000e-06 65.8
40 TraesCS1D01G107800 chr5B 77.792 770 133 26 2794 3541 678704297 678703544 2.640000e-119 440.0
41 TraesCS1D01G107800 chr5B 78.005 391 60 16 3166 3541 678998829 678999208 1.040000e-53 222.0
42 TraesCS1D01G107800 chr5B 78.088 251 39 9 3306 3541 678573756 678574005 2.320000e-30 145.0
43 TraesCS1D01G107800 chr5B 77.099 262 47 8 3287 3541 678703265 678703520 1.080000e-28 139.0
44 TraesCS1D01G107800 chr4A 77.516 765 132 30 2794 3541 632235380 632236121 2.660000e-114 424.0
45 TraesCS1D01G107800 chr4A 73.134 469 96 20 3 453 30850774 30851230 3.000000e-29 141.0
46 TraesCS1D01G107800 chr4A 86.667 60 6 2 6614 6672 702040175 702040117 1.860000e-06 65.8
47 TraesCS1D01G107800 chr4A 97.143 35 1 0 6645 6679 631960123 631960157 8.650000e-05 60.2
48 TraesCS1D01G107800 chr4A 97.143 35 0 1 6645 6678 56251113 56251079 3.110000e-04 58.4
49 TraesCS1D01G107800 chr4A 100.000 31 0 0 6645 6675 466118774 466118744 3.110000e-04 58.4
50 TraesCS1D01G107800 chr3A 76.370 292 58 11 100 385 571336905 571336619 6.460000e-31 147.0
51 TraesCS1D01G107800 chr4D 76.667 240 46 6 263 494 10761952 10762189 3.030000e-24 124.0
52 TraesCS1D01G107800 chr2B 88.710 62 6 1 6610 6671 323015231 323015291 3.090000e-09 75.0
53 TraesCS1D01G107800 chr2B 93.617 47 2 1 816 862 111667203 111667248 1.440000e-07 69.4
54 TraesCS1D01G107800 chr7D 89.286 56 5 1 816 871 62282236 62282182 1.440000e-07 69.4
55 TraesCS1D01G107800 chr6B 89.286 56 4 2 809 863 655893713 655893767 1.440000e-07 69.4
56 TraesCS1D01G107800 chr6B 100.000 31 0 0 6645 6675 315650231 315650201 3.110000e-04 58.4
57 TraesCS1D01G107800 chr2A 95.122 41 2 0 6609 6649 59882025 59881985 1.860000e-06 65.8
58 TraesCS1D01G107800 chr2A 97.143 35 0 1 6645 6678 55466582 55466548 3.110000e-04 58.4
59 TraesCS1D01G107800 chr3B 85.000 60 7 2 805 863 577379240 577379182 8.650000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G107800 chr1D 100815400 100823383 7983 False 7058.500000 13660 100.000000 1 7984 2 chr1D.!!$F3 7983
1 TraesCS1D01G107800 chr1D 376301589 376305165 3576 True 557.500000 595 85.775500 3469 4005 2 chr1D.!!$R2 536
2 TraesCS1D01G107800 chr1D 376319906 376323339 3433 True 540.000000 553 85.194500 3469 4005 2 chr1D.!!$R3 536
3 TraesCS1D01G107800 chr1B 150997923 151004582 6659 True 5073.500000 9190 92.901000 685 7375 2 chr1B.!!$R4 6690
4 TraesCS1D01G107800 chr1B 502925213 502925986 773 True 797.000000 797 85.256000 3468 4246 1 chr1B.!!$R2 778
5 TraesCS1D01G107800 chr1B 502845263 502845788 525 True 582.000000 582 86.592000 3469 4005 1 chr1B.!!$R1 536
6 TraesCS1D01G107800 chr1B 502935354 502935880 526 True 573.000000 573 86.271000 3469 4005 1 chr1B.!!$R3 536
7 TraesCS1D01G107800 chr1A 104582432 104591240 8808 True 1570.142857 7952 92.133143 619 7965 7 chr1A.!!$R2 7346
8 TraesCS1D01G107800 chr2D 95779945 95780449 504 True 784.000000 784 94.872000 1 500 1 chr2D.!!$R1 499
9 TraesCS1D01G107800 chr7A 75293128 75293628 500 True 569.000000 569 87.450000 1 494 1 chr7A.!!$R1 493
10 TraesCS1D01G107800 chr5D 538095730 538096469 739 False 449.000000 449 78.026000 2794 3542 1 chr5D.!!$F2 748
11 TraesCS1D01G107800 chr5D 538096480 538097009 529 True 296.000000 296 77.321000 2991 3542 1 chr5D.!!$R2 551
12 TraesCS1D01G107800 chr5B 678703544 678704297 753 True 440.000000 440 77.792000 2794 3541 1 chr5B.!!$R1 747
13 TraesCS1D01G107800 chr4A 632235380 632236121 741 False 424.000000 424 77.516000 2794 3541 1 chr4A.!!$F3 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 579 0.037975 GGAGTTGCAACTGCCCATTG 60.038 55.000 35.67 0.0 40.96 2.82 F
572 580 0.037975 GAGTTGCAACTGCCCATTGG 60.038 55.000 35.67 0.0 39.88 3.16 F
574 582 0.037975 GTTGCAACTGCCCATTGGAG 60.038 55.000 22.36 0.0 41.18 3.86 F
2345 4181 0.111446 TTGACCGGGGAAAATGCTCA 59.889 50.000 6.32 0.0 0.00 4.26 F
3884 5766 1.002201 TCATTCGGGCACGGTAAGAAA 59.998 47.619 9.32 0.0 41.39 2.52 F
4177 7848 1.067776 GGTGTGAGGTACCGAACTCTG 60.068 57.143 17.58 0.0 34.84 3.35 F
4932 8610 2.623502 GGACTGGCCTCCTTCTAGTACA 60.624 54.545 3.32 0.0 0.00 2.90 F
6494 11240 1.886655 GCGATGGACTTTGTTTCCCCT 60.887 52.381 0.00 0.0 31.33 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 2490 1.152830 ACCGTGGTTTTGCCCATCT 59.847 52.632 0.00 0.0 36.74 2.90 R
2487 4323 2.297033 AGCAGTAAATGGTTGGCACTTG 59.703 45.455 0.00 0.0 35.67 3.16 R
2562 4398 4.207635 TCCGCGTTAATTTCAGTATTAGCG 59.792 41.667 4.92 0.0 43.27 4.26 R
3942 5826 2.093306 CAGTGGCGACTGGACAATAA 57.907 50.000 20.15 0.0 45.26 1.40 R
5860 9566 1.128692 GCACCTTTCGACGAATTCCTG 59.871 52.381 11.71 6.0 0.00 3.86 R
5994 9909 4.246458 GAGGCATGGTTCCGTAGATATTC 58.754 47.826 0.00 0.0 0.00 1.75 R
6776 11523 0.606604 TCTCTTACCCTTCCACGTGC 59.393 55.000 10.91 0.0 0.00 5.34 R
7755 12594 0.112412 ATTCAGGTGGGGCTTTTCGT 59.888 50.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
484 492 0.960861 ACAGCTGACGACGGAGATCA 60.961 55.000 23.35 0.00 0.00 2.92
490 498 1.377366 GACGACGGAGATCAGCCTCA 61.377 60.000 0.00 0.00 34.94 3.86
494 502 0.689080 ACGGAGATCAGCCTCATGGT 60.689 55.000 0.00 0.00 34.94 3.55
500 508 1.229625 TCAGCCTCATGGTGACCCT 60.230 57.895 0.00 0.00 46.14 4.34
501 509 0.842030 TCAGCCTCATGGTGACCCTT 60.842 55.000 0.00 0.00 46.14 3.95
502 510 0.679002 CAGCCTCATGGTGACCCTTG 60.679 60.000 0.00 0.00 45.48 3.61
503 511 0.842030 AGCCTCATGGTGACCCTTGA 60.842 55.000 0.00 1.38 41.31 3.02
504 512 0.038166 GCCTCATGGTGACCCTTGAA 59.962 55.000 0.00 0.00 42.52 2.69
505 513 1.952367 GCCTCATGGTGACCCTTGAAG 60.952 57.143 0.00 0.00 42.52 3.02
506 514 1.457346 CTCATGGTGACCCTTGAAGC 58.543 55.000 0.00 0.00 42.52 3.86
507 515 0.038166 TCATGGTGACCCTTGAAGCC 59.962 55.000 0.00 0.00 40.80 4.35
508 516 1.002134 ATGGTGACCCTTGAAGCCG 60.002 57.895 0.00 0.00 0.00 5.52
509 517 2.359975 GGTGACCCTTGAAGCCGG 60.360 66.667 0.00 0.00 0.00 6.13
510 518 2.359975 GTGACCCTTGAAGCCGGG 60.360 66.667 2.18 0.00 46.26 5.73
511 519 2.528127 TGACCCTTGAAGCCGGGA 60.528 61.111 2.18 0.00 43.44 5.14
512 520 2.269241 GACCCTTGAAGCCGGGAG 59.731 66.667 2.18 0.00 43.44 4.30
513 521 3.978571 GACCCTTGAAGCCGGGAGC 62.979 68.421 2.18 0.00 43.44 4.70
532 540 3.982829 GGAAGCCTTCCGACAACC 58.017 61.111 7.93 0.00 40.59 3.77
533 541 1.674651 GGAAGCCTTCCGACAACCC 60.675 63.158 7.93 0.00 40.59 4.11
534 542 1.072505 GAAGCCTTCCGACAACCCA 59.927 57.895 0.00 0.00 0.00 4.51
535 543 1.228154 AAGCCTTCCGACAACCCAC 60.228 57.895 0.00 0.00 0.00 4.61
536 544 1.990160 AAGCCTTCCGACAACCCACA 61.990 55.000 0.00 0.00 0.00 4.17
537 545 2.258726 GCCTTCCGACAACCCACAC 61.259 63.158 0.00 0.00 0.00 3.82
538 546 1.147376 CCTTCCGACAACCCACACA 59.853 57.895 0.00 0.00 0.00 3.72
539 547 1.164041 CCTTCCGACAACCCACACAC 61.164 60.000 0.00 0.00 0.00 3.82
540 548 1.153127 TTCCGACAACCCACACACC 60.153 57.895 0.00 0.00 0.00 4.16
541 549 1.628238 TTCCGACAACCCACACACCT 61.628 55.000 0.00 0.00 0.00 4.00
542 550 1.153046 CCGACAACCCACACACCTT 60.153 57.895 0.00 0.00 0.00 3.50
543 551 1.164041 CCGACAACCCACACACCTTC 61.164 60.000 0.00 0.00 0.00 3.46
544 552 1.495584 CGACAACCCACACACCTTCG 61.496 60.000 0.00 0.00 0.00 3.79
545 553 1.782028 GACAACCCACACACCTTCGC 61.782 60.000 0.00 0.00 0.00 4.70
546 554 2.590575 AACCCACACACCTTCGCG 60.591 61.111 0.00 0.00 0.00 5.87
547 555 3.394635 AACCCACACACCTTCGCGT 62.395 57.895 5.77 0.00 0.00 6.01
548 556 3.345808 CCCACACACCTTCGCGTG 61.346 66.667 5.77 0.00 39.75 5.34
549 557 3.345808 CCACACACCTTCGCGTGG 61.346 66.667 16.71 16.71 42.72 4.94
550 558 3.345808 CACACACCTTCGCGTGGG 61.346 66.667 20.79 18.44 43.14 4.61
551 559 3.542676 ACACACCTTCGCGTGGGA 61.543 61.111 22.22 0.00 39.69 4.37
552 560 2.738521 CACACCTTCGCGTGGGAG 60.739 66.667 22.22 17.61 39.69 4.30
553 561 4.003788 ACACCTTCGCGTGGGAGG 62.004 66.667 22.22 18.64 38.11 4.30
554 562 3.691342 CACCTTCGCGTGGGAGGA 61.691 66.667 22.22 0.00 0.00 3.71
555 563 3.382832 ACCTTCGCGTGGGAGGAG 61.383 66.667 22.22 4.85 0.00 3.69
556 564 3.382832 CCTTCGCGTGGGAGGAGT 61.383 66.667 5.77 0.00 0.00 3.85
557 565 2.657237 CTTCGCGTGGGAGGAGTT 59.343 61.111 5.77 0.00 0.00 3.01
558 566 1.738099 CTTCGCGTGGGAGGAGTTG 60.738 63.158 5.77 0.00 0.00 3.16
559 567 3.876589 TTCGCGTGGGAGGAGTTGC 62.877 63.158 5.77 0.00 0.00 4.17
560 568 4.680237 CGCGTGGGAGGAGTTGCA 62.680 66.667 0.00 0.00 0.00 4.08
561 569 2.281484 GCGTGGGAGGAGTTGCAA 60.281 61.111 0.00 0.00 0.00 4.08
562 570 2.617274 GCGTGGGAGGAGTTGCAAC 61.617 63.158 22.17 22.17 0.00 4.17
563 571 1.071471 CGTGGGAGGAGTTGCAACT 59.929 57.895 31.57 31.57 43.16 3.16
564 572 1.230635 CGTGGGAGGAGTTGCAACTG 61.231 60.000 35.67 15.23 39.88 3.16
565 573 1.228245 TGGGAGGAGTTGCAACTGC 60.228 57.895 35.76 35.76 46.33 4.40
569 577 4.102113 GGAGTTGCAACTGCCCAT 57.898 55.556 35.67 11.89 40.96 4.00
570 578 2.354902 GGAGTTGCAACTGCCCATT 58.645 52.632 35.67 11.08 40.96 3.16
571 579 0.037975 GGAGTTGCAACTGCCCATTG 60.038 55.000 35.67 0.00 40.96 2.82
572 580 0.037975 GAGTTGCAACTGCCCATTGG 60.038 55.000 35.67 0.00 39.88 3.16
573 581 0.469705 AGTTGCAACTGCCCATTGGA 60.470 50.000 30.66 0.00 41.18 3.53
574 582 0.037975 GTTGCAACTGCCCATTGGAG 60.038 55.000 22.36 0.00 41.18 3.86
575 583 1.186917 TTGCAACTGCCCATTGGAGG 61.187 55.000 3.62 0.00 41.18 4.30
576 584 1.304381 GCAACTGCCCATTGGAGGA 60.304 57.895 3.62 0.00 34.31 3.71
577 585 0.899717 GCAACTGCCCATTGGAGGAA 60.900 55.000 3.62 0.00 34.31 3.36
578 586 1.856629 CAACTGCCCATTGGAGGAAT 58.143 50.000 3.62 0.00 0.00 3.01
579 587 2.181975 CAACTGCCCATTGGAGGAATT 58.818 47.619 3.62 0.00 0.00 2.17
580 588 1.856629 ACTGCCCATTGGAGGAATTG 58.143 50.000 3.62 0.00 0.00 2.32
581 589 1.077663 ACTGCCCATTGGAGGAATTGT 59.922 47.619 3.62 0.00 0.00 2.71
582 590 2.311542 ACTGCCCATTGGAGGAATTGTA 59.688 45.455 3.62 0.00 0.00 2.41
583 591 3.245586 ACTGCCCATTGGAGGAATTGTAA 60.246 43.478 3.62 0.00 0.00 2.41
584 592 3.096092 TGCCCATTGGAGGAATTGTAAC 58.904 45.455 3.62 0.00 0.00 2.50
585 593 2.430694 GCCCATTGGAGGAATTGTAACC 59.569 50.000 3.62 0.00 0.00 2.85
586 594 2.687935 CCCATTGGAGGAATTGTAACCG 59.312 50.000 3.62 0.00 0.00 4.44
587 595 3.352648 CCATTGGAGGAATTGTAACCGT 58.647 45.455 0.00 0.00 0.00 4.83
588 596 3.761752 CCATTGGAGGAATTGTAACCGTT 59.238 43.478 0.00 0.00 0.00 4.44
589 597 4.380444 CCATTGGAGGAATTGTAACCGTTG 60.380 45.833 0.00 0.00 0.00 4.10
590 598 3.495434 TGGAGGAATTGTAACCGTTGT 57.505 42.857 0.00 0.00 0.00 3.32
591 599 3.822940 TGGAGGAATTGTAACCGTTGTT 58.177 40.909 0.00 0.00 38.52 2.83
592 600 4.208746 TGGAGGAATTGTAACCGTTGTTT 58.791 39.130 0.00 0.00 35.87 2.83
593 601 4.036971 TGGAGGAATTGTAACCGTTGTTTG 59.963 41.667 0.00 0.00 35.87 2.93
594 602 4.542735 GAGGAATTGTAACCGTTGTTTGG 58.457 43.478 0.00 0.00 35.87 3.28
595 603 3.054166 GGAATTGTAACCGTTGTTTGGC 58.946 45.455 0.00 0.00 35.87 4.52
596 604 2.409152 ATTGTAACCGTTGTTTGGCG 57.591 45.000 0.00 0.00 35.87 5.69
677 691 1.429463 GTTTCCCAGTGCTACGAGTG 58.571 55.000 0.00 0.00 0.00 3.51
692 706 1.282382 GAGTGGCCTAGGGTGGTTTA 58.718 55.000 11.72 0.00 0.00 2.01
699 713 4.165372 TGGCCTAGGGTGGTTTATTTCTAG 59.835 45.833 11.72 0.00 0.00 2.43
720 734 2.895680 GAGCGGGAGACAGATGCA 59.104 61.111 0.00 0.00 0.00 3.96
741 755 2.028476 ACGTTGTAGCAGATGTTGGCTA 60.028 45.455 0.00 0.00 41.41 3.93
772 786 3.827898 GGGGAGGCAGACGACGAG 61.828 72.222 0.00 0.00 0.00 4.18
886 900 4.322567 GCTGCCCATTCCAAAATACAAAA 58.677 39.130 0.00 0.00 0.00 2.44
935 949 3.461773 CCACCCCGTCTCTCGCAT 61.462 66.667 0.00 0.00 38.35 4.73
936 950 2.105128 CACCCCGTCTCTCGCATC 59.895 66.667 0.00 0.00 38.35 3.91
939 953 1.826054 CCCCGTCTCTCGCATCTCT 60.826 63.158 0.00 0.00 38.35 3.10
941 955 1.278337 CCGTCTCTCGCATCTCTCG 59.722 63.158 0.00 0.00 38.35 4.04
1029 1592 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
1220 1783 2.966516 AGGTGGGGATCTCTCGTTAATC 59.033 50.000 0.00 0.00 0.00 1.75
1231 1794 4.337555 TCTCTCGTTAATCCTTACTTCCGG 59.662 45.833 0.00 0.00 0.00 5.14
1397 1962 1.231958 TTTTTGCGATCGGGCGAAGT 61.232 50.000 18.30 0.00 37.59 3.01
1477 2047 7.088272 GTGTTTTGGTTTGGGTTAGATGATAC 58.912 38.462 0.00 0.00 0.00 2.24
1479 2049 7.040062 TGTTTTGGTTTGGGTTAGATGATACAG 60.040 37.037 0.00 0.00 0.00 2.74
1502 2072 2.842496 AGATCTCTCCATCTTGGTGCAA 59.158 45.455 0.00 0.00 39.03 4.08
1643 2224 5.339008 TTTGGTCTAATAGACGCTGTGAT 57.661 39.130 13.60 0.00 45.96 3.06
1670 2251 3.119849 CGTTTAGGATGAGCTTTGGTTGG 60.120 47.826 0.00 0.00 0.00 3.77
1685 2266 7.387673 AGCTTTGGTTGGCTAATTTCATTTTAC 59.612 33.333 0.00 0.00 37.00 2.01
1738 2319 2.685897 CGCTAGTAGTCTTCAGCCTTCT 59.314 50.000 0.00 0.00 0.00 2.85
1755 2336 3.562779 CTGCTGCCGCTTTGGTTGG 62.563 63.158 0.70 0.00 41.21 3.77
1809 2390 1.865340 GGAACCCGTGAATAATCGAGC 59.135 52.381 0.00 0.00 0.00 5.03
1850 2431 1.681166 CCAAGAGAAGTGATGCAGGGG 60.681 57.143 0.00 0.00 0.00 4.79
1954 2535 7.763071 GGAGACAATACGGTAAATTACTTCACT 59.237 37.037 2.96 0.00 0.00 3.41
1955 2536 9.148104 GAGACAATACGGTAAATTACTTCACTT 57.852 33.333 2.96 0.00 0.00 3.16
2345 4181 0.111446 TTGACCGGGGAAAATGCTCA 59.889 50.000 6.32 0.00 0.00 4.26
2364 4200 1.047596 AAATGTGCCACCAGTGCCAA 61.048 50.000 0.00 0.00 0.00 4.52
2457 4293 1.576451 GATGGTGCGTGCATGTGTGA 61.576 55.000 7.93 0.00 0.00 3.58
2487 4323 8.623903 TGTCTCCATATTGATTTCTGTTAATGC 58.376 33.333 0.00 0.00 0.00 3.56
2950 4787 4.134563 GGAGTTGAAGAGGTTTGCACTTA 58.865 43.478 0.00 0.00 0.00 2.24
3336 5190 5.449107 TGAGCGTATCTATTGGTTAGGAC 57.551 43.478 0.00 0.00 0.00 3.85
3553 5433 3.056536 TGTGCAGTATGAGAACAGAGGAC 60.057 47.826 0.00 0.00 39.69 3.85
3620 5502 2.246091 AGGGACTCTTTGAGGAGGAG 57.754 55.000 0.00 0.00 37.63 3.69
3624 5506 3.111484 GGACTCTTTGAGGAGGAGGATT 58.889 50.000 0.00 0.00 37.63 3.01
3790 5672 4.248859 GCATGCTGACTTACAAGAGAGAA 58.751 43.478 11.37 0.00 0.00 2.87
3813 5695 3.531538 TGACAAAGTTGTGAGGAGTGAC 58.468 45.455 0.42 0.00 42.43 3.67
3884 5766 1.002201 TCATTCGGGCACGGTAAGAAA 59.998 47.619 9.32 0.00 41.39 2.52
3942 5826 4.104831 AGGGCTCAAGTGATAACTACCTT 58.895 43.478 0.00 0.00 0.00 3.50
4024 7025 2.582052 CAAAGGGTGAGCCAGTTGTTA 58.418 47.619 2.50 0.00 36.17 2.41
4030 7031 3.451178 GGGTGAGCCAGTTGTTATCTCTA 59.549 47.826 0.00 0.00 36.17 2.43
4126 7797 2.355513 GGCAAGGCAGAAGATGAGAAGA 60.356 50.000 0.00 0.00 0.00 2.87
4177 7848 1.067776 GGTGTGAGGTACCGAACTCTG 60.068 57.143 17.58 0.00 34.84 3.35
4355 8028 8.944029 CAGAAATACTCATGTCAGAACTTCAAT 58.056 33.333 0.00 0.00 0.00 2.57
4505 8178 7.839200 ACAGGGGTTTAATCAAGCAATTAGTAT 59.161 33.333 0.00 0.00 34.23 2.12
4932 8610 2.623502 GGACTGGCCTCCTTCTAGTACA 60.624 54.545 3.32 0.00 0.00 2.90
5398 9087 6.882140 CCAGGTAAATATCCAAACACACACTA 59.118 38.462 0.00 0.00 0.00 2.74
5650 9350 9.565213 GATTTTAGGTTTTTCTCTCATGTCATG 57.435 33.333 6.47 6.47 0.00 3.07
5662 9362 5.125356 TCTCATGTCATGTTTGTGTCTTGT 58.875 37.500 12.54 0.00 0.00 3.16
5860 9566 4.883585 TGGTAAATCTGATGAGATTGGCAC 59.116 41.667 8.26 7.01 46.45 5.01
5994 9909 9.097257 GAAGAGAGGATTCAGAGAAATTACAAG 57.903 37.037 0.00 0.00 0.00 3.16
6091 10835 9.606631 GAATCTGTTCCATTCATAGAAGTTACT 57.393 33.333 0.00 0.00 31.53 2.24
6174 10918 6.769822 ACCCAATTCATGATCAGACATTCTAC 59.230 38.462 0.09 0.00 0.00 2.59
6201 10945 7.642669 TGACAGAAAAACATAAGAAGAAGCTG 58.357 34.615 0.00 0.00 0.00 4.24
6494 11240 1.886655 GCGATGGACTTTGTTTCCCCT 60.887 52.381 0.00 0.00 31.33 4.79
6584 11330 8.635328 GCTAAAGAAGATAAGCTAGAGGTTAGT 58.365 37.037 7.23 0.00 40.71 2.24
6589 11335 6.887626 AGATAAGCTAGAGGTTAGTAGCAC 57.112 41.667 7.23 0.00 43.55 4.40
6592 11338 8.164733 AGATAAGCTAGAGGTTAGTAGCACATA 58.835 37.037 7.23 0.00 43.55 2.29
6596 11342 6.778069 AGCTAGAGGTTAGTAGCACATATTCA 59.222 38.462 0.00 0.00 43.55 2.57
6606 11352 7.792374 AGTAGCACATATTCACGAAAATCAT 57.208 32.000 0.00 0.00 0.00 2.45
6616 11362 7.849804 ATTCACGAAAATCATGCTTACTACT 57.150 32.000 0.00 0.00 0.00 2.57
6617 11363 6.887376 TCACGAAAATCATGCTTACTACTC 57.113 37.500 0.00 0.00 0.00 2.59
6618 11364 6.394809 TCACGAAAATCATGCTTACTACTCA 58.605 36.000 0.00 0.00 0.00 3.41
6619 11365 6.310467 TCACGAAAATCATGCTTACTACTCAC 59.690 38.462 0.00 0.00 0.00 3.51
6620 11366 6.311445 CACGAAAATCATGCTTACTACTCACT 59.689 38.462 0.00 0.00 0.00 3.41
6621 11367 6.531948 ACGAAAATCATGCTTACTACTCACTC 59.468 38.462 0.00 0.00 0.00 3.51
6622 11368 6.019479 CGAAAATCATGCTTACTACTCACTCC 60.019 42.308 0.00 0.00 0.00 3.85
6623 11369 4.576216 ATCATGCTTACTACTCACTCCG 57.424 45.455 0.00 0.00 0.00 4.63
6624 11370 3.353557 TCATGCTTACTACTCACTCCGT 58.646 45.455 0.00 0.00 0.00 4.69
6625 11371 3.377485 TCATGCTTACTACTCACTCCGTC 59.623 47.826 0.00 0.00 0.00 4.79
6626 11372 3.069079 TGCTTACTACTCACTCCGTCT 57.931 47.619 0.00 0.00 0.00 4.18
6627 11373 3.008330 TGCTTACTACTCACTCCGTCTC 58.992 50.000 0.00 0.00 0.00 3.36
6628 11374 3.008330 GCTTACTACTCACTCCGTCTCA 58.992 50.000 0.00 0.00 0.00 3.27
6629 11375 3.439476 GCTTACTACTCACTCCGTCTCAA 59.561 47.826 0.00 0.00 0.00 3.02
6630 11376 4.082895 GCTTACTACTCACTCCGTCTCAAA 60.083 45.833 0.00 0.00 0.00 2.69
6631 11377 5.564259 GCTTACTACTCACTCCGTCTCAAAA 60.564 44.000 0.00 0.00 0.00 2.44
6632 11378 6.585695 TTACTACTCACTCCGTCTCAAAAT 57.414 37.500 0.00 0.00 0.00 1.82
6633 11379 7.627939 GCTTACTACTCACTCCGTCTCAAAATA 60.628 40.741 0.00 0.00 0.00 1.40
6634 11380 6.585695 ACTACTCACTCCGTCTCAAAATAA 57.414 37.500 0.00 0.00 0.00 1.40
6635 11381 6.622549 ACTACTCACTCCGTCTCAAAATAAG 58.377 40.000 0.00 0.00 0.00 1.73
6636 11382 5.470047 ACTCACTCCGTCTCAAAATAAGT 57.530 39.130 0.00 0.00 0.00 2.24
6637 11383 5.230942 ACTCACTCCGTCTCAAAATAAGTG 58.769 41.667 0.00 0.00 35.20 3.16
6638 11384 5.209818 TCACTCCGTCTCAAAATAAGTGT 57.790 39.130 0.00 0.00 35.37 3.55
6639 11385 5.227908 TCACTCCGTCTCAAAATAAGTGTC 58.772 41.667 0.00 0.00 35.37 3.67
6640 11386 5.010719 TCACTCCGTCTCAAAATAAGTGTCT 59.989 40.000 0.00 0.00 35.37 3.41
6641 11387 5.696724 CACTCCGTCTCAAAATAAGTGTCTT 59.303 40.000 0.00 0.00 0.00 3.01
6642 11388 6.866770 CACTCCGTCTCAAAATAAGTGTCTTA 59.133 38.462 0.00 0.00 0.00 2.10
6643 11389 7.384115 CACTCCGTCTCAAAATAAGTGTCTTAA 59.616 37.037 0.00 0.00 0.00 1.85
6644 11390 7.929785 ACTCCGTCTCAAAATAAGTGTCTTAAA 59.070 33.333 0.00 0.00 0.00 1.52
6645 11391 8.080083 TCCGTCTCAAAATAAGTGTCTTAAAC 57.920 34.615 0.00 0.00 0.00 2.01
6646 11392 7.929785 TCCGTCTCAAAATAAGTGTCTTAAACT 59.070 33.333 0.00 0.00 0.00 2.66
6647 11393 8.557029 CCGTCTCAAAATAAGTGTCTTAAACTT 58.443 33.333 0.00 0.00 40.82 2.66
6658 11404 7.198306 AGTGTCTTAAACTTATTTTGGGACG 57.802 36.000 0.00 0.00 35.00 4.79
6659 11405 6.206048 AGTGTCTTAAACTTATTTTGGGACGG 59.794 38.462 0.00 0.00 35.00 4.79
6660 11406 6.205270 GTGTCTTAAACTTATTTTGGGACGGA 59.795 38.462 0.00 0.00 35.00 4.69
6661 11407 6.428771 TGTCTTAAACTTATTTTGGGACGGAG 59.571 38.462 0.00 0.00 35.00 4.63
6662 11408 5.941647 TCTTAAACTTATTTTGGGACGGAGG 59.058 40.000 0.00 0.00 0.00 4.30
6663 11409 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
6664 11410 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
6665 11411 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
6666 11412 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
6667 11413 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6676 11422 4.159879 GGGACGGAGGGAGTATATTGTATG 59.840 50.000 0.00 0.00 0.00 2.39
6693 11439 6.698008 TTGTATGCGAGGAAAATTGATGAT 57.302 33.333 0.00 0.00 0.00 2.45
6703 11449 7.543359 AGGAAAATTGATGATTGGTCTGAAA 57.457 32.000 0.00 0.00 0.00 2.69
6776 11523 2.000447 GTTCTCGAATTCTTGGGACGG 59.000 52.381 3.52 0.00 0.00 4.79
6792 11539 4.296265 GGCACGTGGAAGGGTAAG 57.704 61.111 18.88 0.00 0.00 2.34
6793 11540 1.675219 GGCACGTGGAAGGGTAAGA 59.325 57.895 18.88 0.00 0.00 2.10
6794 11541 0.391263 GGCACGTGGAAGGGTAAGAG 60.391 60.000 18.88 0.00 0.00 2.85
6795 11542 0.606604 GCACGTGGAAGGGTAAGAGA 59.393 55.000 18.88 0.00 0.00 3.10
6796 11543 1.672145 GCACGTGGAAGGGTAAGAGAC 60.672 57.143 18.88 0.00 0.00 3.36
6797 11544 1.893801 CACGTGGAAGGGTAAGAGACT 59.106 52.381 7.95 0.00 0.00 3.24
6798 11545 2.299297 CACGTGGAAGGGTAAGAGACTT 59.701 50.000 7.95 0.00 0.00 3.01
6831 11578 6.569179 AGCCGTAATATTTTGTTTGTCACT 57.431 33.333 0.00 0.00 0.00 3.41
6896 11643 0.744771 GGTCAAAGAGCGGGGATGTC 60.745 60.000 0.00 0.00 0.00 3.06
6935 11682 3.334691 CGATGGTACTGCAGAGGAAAAA 58.665 45.455 23.35 0.00 0.00 1.94
6979 11729 2.750637 TGGCTCTCGGTCTCGGAC 60.751 66.667 0.00 0.00 36.95 4.79
7085 11839 4.812626 AGGGTGTCTACTTTGTTTGTAACG 59.187 41.667 0.00 0.00 0.00 3.18
7089 11843 6.697019 GGTGTCTACTTTGTTTGTAACGAGTA 59.303 38.462 0.00 0.00 33.96 2.59
7090 11844 7.096312 GGTGTCTACTTTGTTTGTAACGAGTAG 60.096 40.741 17.67 17.67 44.05 2.57
7091 11845 7.645340 GTGTCTACTTTGTTTGTAACGAGTAGA 59.355 37.037 20.08 20.08 46.21 2.59
7094 11848 9.831737 TCTACTTTGTTTGTAACGAGTAGATAC 57.168 33.333 20.08 0.00 45.05 2.24
7095 11849 7.558435 ACTTTGTTTGTAACGAGTAGATACG 57.442 36.000 0.00 0.00 31.56 3.06
7180 11947 4.573607 GTGCTGTTGATATTCAGAGATGCA 59.426 41.667 0.00 0.00 34.02 3.96
7274 12041 5.176223 CCTCACAACTTGTTGAATTTGCATC 59.824 40.000 18.82 0.00 0.00 3.91
7392 12231 8.932610 ACAATGGATTATCTCAGTGTTATCTCT 58.067 33.333 9.66 0.00 38.77 3.10
7769 12608 2.675423 GGGACGAAAAGCCCCACC 60.675 66.667 0.00 0.00 39.89 4.61
7771 12610 1.971695 GGACGAAAAGCCCCACCTG 60.972 63.158 0.00 0.00 0.00 4.00
7866 12708 9.342308 AGTTTTCAGATTACAGAAGAATCACAA 57.658 29.630 0.00 0.00 36.03 3.33
7881 12723 6.917217 GAATCACAAGTTCAGGGATTCTAG 57.083 41.667 10.11 0.00 40.24 2.43
7887 12729 4.628661 AGTTCAGGGATTCTAGGTAGGT 57.371 45.455 0.00 0.00 0.00 3.08
7900 12744 3.009115 TAGGTGACCCAGGCCAGC 61.009 66.667 5.01 0.00 0.00 4.85
7913 12757 1.980772 GCCAGCATGCCTCCTTGTT 60.981 57.895 15.66 0.00 31.97 2.83
7920 12764 2.173519 CATGCCTCCTTGTTCATGGTT 58.826 47.619 0.00 0.00 34.32 3.67
7923 12767 2.364970 TGCCTCCTTGTTCATGGTTTTG 59.635 45.455 0.00 0.00 0.00 2.44
7929 12773 3.181477 CCTTGTTCATGGTTTTGCAGTCA 60.181 43.478 0.00 0.00 0.00 3.41
7951 12795 6.524586 GTCAAAAAGACCAAAGCATAAGATCG 59.475 38.462 0.00 0.00 41.56 3.69
7966 12810 3.362262 TCGGCAGTAGCAGAACGT 58.638 55.556 0.00 0.00 42.01 3.99
7967 12811 2.558617 TCGGCAGTAGCAGAACGTA 58.441 52.632 0.00 0.00 42.01 3.57
7968 12812 0.169672 TCGGCAGTAGCAGAACGTAC 59.830 55.000 0.00 0.00 42.01 3.67
7969 12813 0.109458 CGGCAGTAGCAGAACGTACA 60.109 55.000 0.00 0.00 44.61 2.90
7970 12814 1.630148 GGCAGTAGCAGAACGTACAG 58.370 55.000 0.00 0.00 44.61 2.74
7971 12815 0.992802 GCAGTAGCAGAACGTACAGC 59.007 55.000 0.00 0.00 41.58 4.40
7972 12816 1.668919 GCAGTAGCAGAACGTACAGCA 60.669 52.381 8.44 0.00 41.58 4.41
7973 12817 2.254459 CAGTAGCAGAACGTACAGCAG 58.746 52.381 8.44 0.00 0.00 4.24
7974 12818 1.202582 AGTAGCAGAACGTACAGCAGG 59.797 52.381 8.44 0.00 0.00 4.85
7975 12819 0.530744 TAGCAGAACGTACAGCAGGG 59.469 55.000 8.44 0.00 0.00 4.45
7976 12820 2.391389 GCAGAACGTACAGCAGGGC 61.391 63.158 0.00 0.00 0.00 5.19
7977 12821 1.293498 CAGAACGTACAGCAGGGCT 59.707 57.895 0.00 0.00 40.77 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
484 492 0.842030 TCAAGGGTCACCATGAGGCT 60.842 55.000 0.00 0.00 39.41 4.58
490 498 1.002134 CGGCTTCAAGGGTCACCAT 60.002 57.895 0.00 0.00 40.13 3.55
506 514 3.689002 GAAGGCTTCCAGCTCCCGG 62.689 68.421 16.50 0.00 41.99 5.73
507 515 2.124942 GAAGGCTTCCAGCTCCCG 60.125 66.667 16.50 0.00 41.99 5.14
515 523 1.674651 GGGTTGTCGGAAGGCTTCC 60.675 63.158 32.12 32.12 46.62 3.46
516 524 1.072505 TGGGTTGTCGGAAGGCTTC 59.927 57.895 18.98 18.98 36.07 3.86
517 525 1.228154 GTGGGTTGTCGGAAGGCTT 60.228 57.895 0.00 0.00 36.07 4.35
518 526 2.430367 GTGGGTTGTCGGAAGGCT 59.570 61.111 0.00 0.00 36.07 4.58
519 527 2.112297 TGTGGGTTGTCGGAAGGC 59.888 61.111 0.00 0.00 0.00 4.35
520 528 1.147376 TGTGTGGGTTGTCGGAAGG 59.853 57.895 0.00 0.00 0.00 3.46
521 529 1.164041 GGTGTGTGGGTTGTCGGAAG 61.164 60.000 0.00 0.00 0.00 3.46
522 530 1.153127 GGTGTGTGGGTTGTCGGAA 60.153 57.895 0.00 0.00 0.00 4.30
523 531 1.628238 AAGGTGTGTGGGTTGTCGGA 61.628 55.000 0.00 0.00 0.00 4.55
524 532 1.153046 AAGGTGTGTGGGTTGTCGG 60.153 57.895 0.00 0.00 0.00 4.79
525 533 1.495584 CGAAGGTGTGTGGGTTGTCG 61.496 60.000 0.00 0.00 0.00 4.35
526 534 1.782028 GCGAAGGTGTGTGGGTTGTC 61.782 60.000 0.00 0.00 0.00 3.18
527 535 1.822186 GCGAAGGTGTGTGGGTTGT 60.822 57.895 0.00 0.00 0.00 3.32
528 536 2.892334 CGCGAAGGTGTGTGGGTTG 61.892 63.158 0.00 0.00 0.00 3.77
529 537 2.590575 CGCGAAGGTGTGTGGGTT 60.591 61.111 0.00 0.00 0.00 4.11
530 538 3.857038 ACGCGAAGGTGTGTGGGT 61.857 61.111 15.93 0.00 35.08 4.51
531 539 3.345808 CACGCGAAGGTGTGTGGG 61.346 66.667 15.93 0.00 46.92 4.61
536 544 4.003788 CCTCCCACGCGAAGGTGT 62.004 66.667 15.93 0.00 36.16 4.16
537 545 3.649277 CTCCTCCCACGCGAAGGTG 62.649 68.421 15.93 13.50 37.66 4.00
538 546 3.382832 CTCCTCCCACGCGAAGGT 61.383 66.667 15.93 0.00 0.00 3.50
539 547 2.943978 AACTCCTCCCACGCGAAGG 61.944 63.158 15.93 14.73 0.00 3.46
540 548 1.738099 CAACTCCTCCCACGCGAAG 60.738 63.158 15.93 4.40 0.00 3.79
541 549 2.342279 CAACTCCTCCCACGCGAA 59.658 61.111 15.93 0.00 0.00 4.70
542 550 4.373116 GCAACTCCTCCCACGCGA 62.373 66.667 15.93 0.00 0.00 5.87
543 551 4.680237 TGCAACTCCTCCCACGCG 62.680 66.667 3.53 3.53 0.00 6.01
544 552 2.281484 TTGCAACTCCTCCCACGC 60.281 61.111 0.00 0.00 0.00 5.34
545 553 1.071471 AGTTGCAACTCCTCCCACG 59.929 57.895 26.36 0.00 32.86 4.94
546 554 1.518903 GCAGTTGCAACTCCTCCCAC 61.519 60.000 28.97 9.02 41.59 4.61
547 555 1.228245 GCAGTTGCAACTCCTCCCA 60.228 57.895 28.97 0.00 41.59 4.37
548 556 1.973812 GGCAGTTGCAACTCCTCCC 60.974 63.158 28.97 20.85 44.36 4.30
549 557 1.973812 GGGCAGTTGCAACTCCTCC 60.974 63.158 28.97 25.81 44.36 4.30
550 558 0.610232 ATGGGCAGTTGCAACTCCTC 60.610 55.000 28.97 21.63 44.36 3.71
551 559 0.178953 AATGGGCAGTTGCAACTCCT 60.179 50.000 28.97 14.55 44.36 3.69
552 560 0.037975 CAATGGGCAGTTGCAACTCC 60.038 55.000 28.97 27.68 44.36 3.85
553 561 0.037975 CCAATGGGCAGTTGCAACTC 60.038 55.000 28.97 21.43 44.36 3.01
554 562 0.469705 TCCAATGGGCAGTTGCAACT 60.470 50.000 26.36 26.36 44.36 3.16
555 563 0.037975 CTCCAATGGGCAGTTGCAAC 60.038 55.000 22.17 22.17 44.36 4.17
556 564 1.186917 CCTCCAATGGGCAGTTGCAA 61.187 55.000 6.43 0.00 44.36 4.08
557 565 1.607178 CCTCCAATGGGCAGTTGCA 60.607 57.895 6.43 0.00 44.36 4.08
558 566 0.899717 TTCCTCCAATGGGCAGTTGC 60.900 55.000 0.00 0.00 41.14 4.17
559 567 1.856629 ATTCCTCCAATGGGCAGTTG 58.143 50.000 0.00 0.00 0.00 3.16
560 568 2.181975 CAATTCCTCCAATGGGCAGTT 58.818 47.619 0.00 0.00 0.00 3.16
561 569 1.077663 ACAATTCCTCCAATGGGCAGT 59.922 47.619 0.00 0.00 0.00 4.40
562 570 1.856629 ACAATTCCTCCAATGGGCAG 58.143 50.000 0.00 0.00 0.00 4.85
563 571 3.096092 GTTACAATTCCTCCAATGGGCA 58.904 45.455 0.00 0.00 0.00 5.36
564 572 2.430694 GGTTACAATTCCTCCAATGGGC 59.569 50.000 0.00 0.00 0.00 5.36
565 573 2.687935 CGGTTACAATTCCTCCAATGGG 59.312 50.000 0.00 0.00 0.00 4.00
566 574 3.352648 ACGGTTACAATTCCTCCAATGG 58.647 45.455 0.00 0.00 0.00 3.16
567 575 4.217550 ACAACGGTTACAATTCCTCCAATG 59.782 41.667 0.00 0.00 0.00 2.82
568 576 4.403734 ACAACGGTTACAATTCCTCCAAT 58.596 39.130 0.00 0.00 0.00 3.16
569 577 3.822940 ACAACGGTTACAATTCCTCCAA 58.177 40.909 0.00 0.00 0.00 3.53
570 578 3.495434 ACAACGGTTACAATTCCTCCA 57.505 42.857 0.00 0.00 0.00 3.86
571 579 4.542735 CAAACAACGGTTACAATTCCTCC 58.457 43.478 0.00 0.00 35.82 4.30
572 580 4.542735 CCAAACAACGGTTACAATTCCTC 58.457 43.478 0.00 0.00 35.82 3.71
573 581 3.243602 GCCAAACAACGGTTACAATTCCT 60.244 43.478 0.00 0.00 35.82 3.36
574 582 3.054166 GCCAAACAACGGTTACAATTCC 58.946 45.455 0.00 0.00 35.82 3.01
575 583 2.722116 CGCCAAACAACGGTTACAATTC 59.278 45.455 0.00 0.00 35.82 2.17
576 584 2.544069 CCGCCAAACAACGGTTACAATT 60.544 45.455 0.00 0.00 44.46 2.32
577 585 1.001158 CCGCCAAACAACGGTTACAAT 60.001 47.619 0.00 0.00 44.46 2.71
578 586 0.381089 CCGCCAAACAACGGTTACAA 59.619 50.000 0.00 0.00 44.46 2.41
579 587 2.023318 CCGCCAAACAACGGTTACA 58.977 52.632 0.00 0.00 44.46 2.41
580 588 4.927059 CCGCCAAACAACGGTTAC 57.073 55.556 0.00 0.00 44.46 2.50
585 593 2.252260 CAGCTCCGCCAAACAACG 59.748 61.111 0.00 0.00 0.00 4.10
586 594 2.050077 GCAGCTCCGCCAAACAAC 60.050 61.111 0.00 0.00 0.00 3.32
587 595 2.124060 TTGCAGCTCCGCCAAACAA 61.124 52.632 0.00 0.00 0.00 2.83
588 596 2.518112 TTGCAGCTCCGCCAAACA 60.518 55.556 0.00 0.00 0.00 2.83
589 597 2.050077 GTTGCAGCTCCGCCAAAC 60.050 61.111 0.00 0.00 0.00 2.93
590 598 3.294493 GGTTGCAGCTCCGCCAAA 61.294 61.111 0.00 0.00 0.00 3.28
604 612 2.676471 GCCCTCCAACATGCGGTT 60.676 61.111 0.00 0.00 41.47 4.44
605 613 3.210012 AAGCCCTCCAACATGCGGT 62.210 57.895 0.00 0.00 0.00 5.68
606 614 2.361610 AAGCCCTCCAACATGCGG 60.362 61.111 0.00 0.00 0.00 5.69
607 615 2.879907 CAAGCCCTCCAACATGCG 59.120 61.111 0.00 0.00 0.00 4.73
608 616 2.575461 GCAAGCCCTCCAACATGC 59.425 61.111 0.00 0.00 0.00 4.06
609 617 1.607178 TGGCAAGCCCTCCAACATG 60.607 57.895 8.89 0.00 34.56 3.21
610 618 1.607467 GTGGCAAGCCCTCCAACAT 60.607 57.895 8.89 0.00 33.57 2.71
611 619 2.203480 GTGGCAAGCCCTCCAACA 60.203 61.111 8.89 0.00 33.57 3.33
612 620 2.991540 GGTGGCAAGCCCTCCAAC 60.992 66.667 8.89 0.00 44.96 3.77
613 621 4.659172 CGGTGGCAAGCCCTCCAA 62.659 66.667 17.91 0.00 45.74 3.53
649 657 4.404654 CTGGGAAACGCGCCTTGC 62.405 66.667 5.73 5.09 41.47 4.01
651 659 2.978010 CACTGGGAAACGCGCCTT 60.978 61.111 5.73 0.00 0.00 4.35
657 671 0.038526 ACTCGTAGCACTGGGAAACG 60.039 55.000 0.00 0.00 34.99 3.60
677 691 3.664551 AGAAATAAACCACCCTAGGCC 57.335 47.619 2.05 0.00 0.00 5.19
692 706 1.749334 CTCCCGCTCGCCCTAGAAAT 61.749 60.000 0.00 0.00 0.00 2.17
720 734 1.156736 GCCAACATCTGCTACAACGT 58.843 50.000 0.00 0.00 0.00 3.99
741 755 1.834263 CCTCCCCTTCGTCTCAATTCT 59.166 52.381 0.00 0.00 0.00 2.40
772 786 0.842635 ATCAGATCCTGTGCCCCTTC 59.157 55.000 0.00 0.00 32.61 3.46
933 947 3.141294 CGAGAGTTCGCGAGAGATG 57.859 57.895 9.59 0.00 43.69 2.90
943 957 0.593773 GCGGAGAGATGCGAGAGTTC 60.594 60.000 0.00 0.00 0.00 3.01
944 958 1.034838 AGCGGAGAGATGCGAGAGTT 61.035 55.000 0.00 0.00 35.87 3.01
945 959 1.453015 AGCGGAGAGATGCGAGAGT 60.453 57.895 0.00 0.00 35.87 3.24
1083 1646 2.126071 CTCACCGCCGACGTGAAT 60.126 61.111 0.00 0.00 37.70 2.57
1194 1757 1.755621 CGAGAGATCCCCACCTCATCA 60.756 57.143 0.00 0.00 32.07 3.07
1220 1783 3.323243 CACAAGTACACCGGAAGTAAGG 58.677 50.000 9.46 6.31 0.00 2.69
1231 1794 0.234884 GAAGTGGCGCACAAGTACAC 59.765 55.000 10.83 6.12 36.74 2.90
1397 1962 5.262588 TGAATCGCAGATCAGCTAAACTA 57.737 39.130 8.57 0.00 45.12 2.24
1437 2007 5.301805 ACCAAAACACCTGTCCAGAAATAAG 59.698 40.000 0.00 0.00 0.00 1.73
1477 2047 4.501229 GCACCAAGATGGAGAGATCTACTG 60.501 50.000 2.85 0.00 40.96 2.74
1479 2049 3.386078 TGCACCAAGATGGAGAGATCTAC 59.614 47.826 2.85 0.00 40.96 2.59
1502 2072 1.358787 TGGTCATCCCTGCAATTTCCT 59.641 47.619 0.00 0.00 0.00 3.36
1643 2224 5.300792 ACCAAAGCTCATCCTAAACGAAAAA 59.699 36.000 0.00 0.00 0.00 1.94
1795 2376 4.428922 CTGAACAGCTCGATTATTCACG 57.571 45.455 0.00 0.00 0.00 4.35
1862 2443 8.218338 TCTTGATCTGATTTCTTATTTCTGGC 57.782 34.615 0.00 0.00 0.00 4.85
1909 2490 1.152830 ACCGTGGTTTTGCCCATCT 59.847 52.632 0.00 0.00 36.74 2.90
1924 2505 2.945447 TTACCGTATTGTCTCCACCG 57.055 50.000 0.00 0.00 0.00 4.94
2262 4095 8.869897 GTCATGAGACTCACGAAAATAAATACA 58.130 33.333 7.47 0.00 41.64 2.29
2283 4119 8.583810 AGATGATTGAAACAACAAAAGTCATG 57.416 30.769 0.00 0.00 31.53 3.07
2289 4125 9.695526 CCATTCTAGATGATTGAAACAACAAAA 57.304 29.630 0.00 0.00 33.44 2.44
2291 4127 7.669304 TCCCATTCTAGATGATTGAAACAACAA 59.331 33.333 0.00 0.00 0.00 2.83
2364 4200 5.449553 ACCACCTTCTTCTTGTCATTTCTT 58.550 37.500 0.00 0.00 0.00 2.52
2487 4323 2.297033 AGCAGTAAATGGTTGGCACTTG 59.703 45.455 0.00 0.00 35.67 3.16
2562 4398 4.207635 TCCGCGTTAATTTCAGTATTAGCG 59.792 41.667 4.92 0.00 43.27 4.26
2577 4413 1.534385 CGTCCACATATGTCCGCGTTA 60.534 52.381 5.07 0.00 0.00 3.18
3015 4852 6.616237 AATCATTGAGGGAAAAAGCAGAAT 57.384 33.333 0.00 0.00 0.00 2.40
3336 5190 8.849490 CACATGTTGAAAGTAAATATGGAAACG 58.151 33.333 0.00 0.00 32.27 3.60
3553 5433 6.867662 ATTCTTGCCGAAAATATAGTCCTG 57.132 37.500 0.00 0.00 34.79 3.86
3624 5506 3.574952 CCACCAGTTGGGGAGTCA 58.425 61.111 0.92 0.00 42.67 3.41
3661 5543 6.425114 CCATCACTATTTGCACTCCATAGTAC 59.575 42.308 6.69 0.00 32.92 2.73
3790 5672 3.197766 TCACTCCTCACAACTTTGTCAGT 59.802 43.478 0.00 0.00 39.91 3.41
3884 5766 5.661458 CCTTCCGTACTGTCTTTATGTCAT 58.339 41.667 0.00 0.00 0.00 3.06
3942 5826 2.093306 CAGTGGCGACTGGACAATAA 57.907 50.000 20.15 0.00 45.26 1.40
4024 7025 8.547173 AGAGGTTGATTGAAGAACATTAGAGAT 58.453 33.333 0.00 0.00 0.00 2.75
4030 7031 5.388654 ACCAGAGGTTGATTGAAGAACATT 58.611 37.500 0.00 0.00 27.29 2.71
4126 7797 5.455326 GGCAATCTACTACCCTCACATCAAT 60.455 44.000 0.00 0.00 0.00 2.57
4177 7848 8.686334 ACTATGACATCCAATAAAAATGTGGAC 58.314 33.333 0.00 0.00 44.05 4.02
4702 8380 9.632807 TTTTCCGGTAAACATCATTATTCAAAG 57.367 29.630 0.00 0.00 0.00 2.77
4788 8466 3.804036 ACATAGCACAATAAGCGCCTAA 58.196 40.909 2.29 0.00 37.01 2.69
4932 8610 2.421424 GCGAGGCAATCTCTTGTCAAAT 59.579 45.455 0.00 0.00 39.52 2.32
5398 9087 1.202639 TGTCTCACATGGCACTTCGTT 60.203 47.619 0.00 0.00 0.00 3.85
5650 9350 4.102649 GTGCAAACCTACAAGACACAAAC 58.897 43.478 0.00 0.00 0.00 2.93
5860 9566 1.128692 GCACCTTTCGACGAATTCCTG 59.871 52.381 11.71 6.00 0.00 3.86
5994 9909 4.246458 GAGGCATGGTTCCGTAGATATTC 58.754 47.826 0.00 0.00 0.00 1.75
6174 10918 7.040823 AGCTTCTTCTTATGTTTTTCTGTCAGG 60.041 37.037 0.00 0.00 0.00 3.86
6494 11240 3.011566 ACACACTCACCCACATTTTCA 57.988 42.857 0.00 0.00 0.00 2.69
6584 11330 6.260714 AGCATGATTTTCGTGAATATGTGCTA 59.739 34.615 14.78 0.00 35.46 3.49
6589 11335 9.586150 GTAGTAAGCATGATTTTCGTGAATATG 57.414 33.333 0.00 0.00 35.46 1.78
6592 11338 7.549134 TGAGTAGTAAGCATGATTTTCGTGAAT 59.451 33.333 0.00 0.00 35.46 2.57
6596 11342 6.398918 AGTGAGTAGTAAGCATGATTTTCGT 58.601 36.000 0.00 0.00 0.00 3.85
6619 11365 7.884816 TTAAGACACTTATTTTGAGACGGAG 57.115 36.000 0.00 0.00 0.00 4.63
6620 11366 7.929785 AGTTTAAGACACTTATTTTGAGACGGA 59.070 33.333 0.00 0.00 0.00 4.69
6621 11367 8.084590 AGTTTAAGACACTTATTTTGAGACGG 57.915 34.615 0.00 0.00 0.00 4.79
6632 11378 8.776470 CGTCCCAAAATAAGTTTAAGACACTTA 58.224 33.333 1.70 1.70 40.26 2.24
6633 11379 7.255346 CCGTCCCAAAATAAGTTTAAGACACTT 60.255 37.037 0.00 0.00 38.13 3.16
6634 11380 6.206048 CCGTCCCAAAATAAGTTTAAGACACT 59.794 38.462 0.00 0.00 33.21 3.55
6635 11381 6.205270 TCCGTCCCAAAATAAGTTTAAGACAC 59.795 38.462 0.00 0.00 33.21 3.67
6636 11382 6.297582 TCCGTCCCAAAATAAGTTTAAGACA 58.702 36.000 0.00 0.00 33.21 3.41
6637 11383 6.128090 CCTCCGTCCCAAAATAAGTTTAAGAC 60.128 42.308 0.00 0.00 31.56 3.01
6638 11384 5.941647 CCTCCGTCCCAAAATAAGTTTAAGA 59.058 40.000 0.00 0.00 0.00 2.10
6639 11385 5.124936 CCCTCCGTCCCAAAATAAGTTTAAG 59.875 44.000 0.00 0.00 0.00 1.85
6640 11386 5.011586 CCCTCCGTCCCAAAATAAGTTTAA 58.988 41.667 0.00 0.00 0.00 1.52
6641 11387 4.289148 TCCCTCCGTCCCAAAATAAGTTTA 59.711 41.667 0.00 0.00 0.00 2.01
6642 11388 3.074836 TCCCTCCGTCCCAAAATAAGTTT 59.925 43.478 0.00 0.00 0.00 2.66
6643 11389 2.645797 TCCCTCCGTCCCAAAATAAGTT 59.354 45.455 0.00 0.00 0.00 2.66
6644 11390 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
6645 11391 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
6646 11392 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
6647 11393 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
6648 11394 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6649 11395 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
6650 11396 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
6651 11397 2.969950 CAATATACTCCCTCCGTCCCAA 59.030 50.000 0.00 0.00 0.00 4.12
6652 11398 2.090943 ACAATATACTCCCTCCGTCCCA 60.091 50.000 0.00 0.00 0.00 4.37
6653 11399 2.606378 ACAATATACTCCCTCCGTCCC 58.394 52.381 0.00 0.00 0.00 4.46
6654 11400 4.381718 GCATACAATATACTCCCTCCGTCC 60.382 50.000 0.00 0.00 0.00 4.79
6655 11401 4.674623 CGCATACAATATACTCCCTCCGTC 60.675 50.000 0.00 0.00 0.00 4.79
6656 11402 3.192844 CGCATACAATATACTCCCTCCGT 59.807 47.826 0.00 0.00 0.00 4.69
6657 11403 3.442625 TCGCATACAATATACTCCCTCCG 59.557 47.826 0.00 0.00 0.00 4.63
6658 11404 4.142138 CCTCGCATACAATATACTCCCTCC 60.142 50.000 0.00 0.00 0.00 4.30
6659 11405 4.705507 TCCTCGCATACAATATACTCCCTC 59.294 45.833 0.00 0.00 0.00 4.30
6660 11406 4.673968 TCCTCGCATACAATATACTCCCT 58.326 43.478 0.00 0.00 0.00 4.20
6661 11407 5.401531 TTCCTCGCATACAATATACTCCC 57.598 43.478 0.00 0.00 0.00 4.30
6662 11408 7.907214 ATTTTCCTCGCATACAATATACTCC 57.093 36.000 0.00 0.00 0.00 3.85
6663 11409 8.988934 TCAATTTTCCTCGCATACAATATACTC 58.011 33.333 0.00 0.00 0.00 2.59
6664 11410 8.902540 TCAATTTTCCTCGCATACAATATACT 57.097 30.769 0.00 0.00 0.00 2.12
6665 11411 9.546909 CATCAATTTTCCTCGCATACAATATAC 57.453 33.333 0.00 0.00 0.00 1.47
6666 11412 9.500785 TCATCAATTTTCCTCGCATACAATATA 57.499 29.630 0.00 0.00 0.00 0.86
6667 11413 8.394971 TCATCAATTTTCCTCGCATACAATAT 57.605 30.769 0.00 0.00 0.00 1.28
6676 11422 4.096984 AGACCAATCATCAATTTTCCTCGC 59.903 41.667 0.00 0.00 0.00 5.03
6693 11439 6.739331 ATAACCAAACCAATTTCAGACCAA 57.261 33.333 0.00 0.00 0.00 3.67
6776 11523 0.606604 TCTCTTACCCTTCCACGTGC 59.393 55.000 10.91 0.00 0.00 5.34
6791 11538 3.054948 ACGGCTAGTGTCTCTAAGTCTCT 60.055 47.826 0.00 0.00 0.00 3.10
6792 11539 3.272581 ACGGCTAGTGTCTCTAAGTCTC 58.727 50.000 0.00 0.00 0.00 3.36
6793 11540 3.353370 ACGGCTAGTGTCTCTAAGTCT 57.647 47.619 0.00 0.00 0.00 3.24
6794 11541 5.754543 ATTACGGCTAGTGTCTCTAAGTC 57.245 43.478 0.00 0.00 0.00 3.01
6795 11542 7.820578 AATATTACGGCTAGTGTCTCTAAGT 57.179 36.000 0.00 0.00 0.00 2.24
6796 11543 8.969267 CAAAATATTACGGCTAGTGTCTCTAAG 58.031 37.037 0.00 0.00 0.00 2.18
6797 11544 8.472413 ACAAAATATTACGGCTAGTGTCTCTAA 58.528 33.333 0.00 0.00 0.00 2.10
6798 11545 8.004087 ACAAAATATTACGGCTAGTGTCTCTA 57.996 34.615 0.00 0.00 0.00 2.43
6831 11578 6.882610 ATTAACACATTGACTGAAAGCTCA 57.117 33.333 0.00 0.00 37.60 4.26
6896 11643 2.034687 CTGGACTGGTTGGGCTGG 59.965 66.667 0.00 0.00 0.00 4.85
6935 11682 0.533951 CGCGGGTACTCCTTTTAGGT 59.466 55.000 0.00 0.00 36.53 3.08
7085 11839 6.567050 TGTCAATTGTTACCCGTATCTACTC 58.433 40.000 5.13 0.00 0.00 2.59
7089 11843 5.801380 ACTTGTCAATTGTTACCCGTATCT 58.199 37.500 5.13 0.00 0.00 1.98
7090 11844 6.148150 TCAACTTGTCAATTGTTACCCGTATC 59.852 38.462 5.13 0.00 0.00 2.24
7091 11845 5.998981 TCAACTTGTCAATTGTTACCCGTAT 59.001 36.000 5.13 0.00 0.00 3.06
7092 11846 5.236911 GTCAACTTGTCAATTGTTACCCGTA 59.763 40.000 5.13 0.00 0.00 4.02
7093 11847 4.035909 GTCAACTTGTCAATTGTTACCCGT 59.964 41.667 5.13 0.00 0.00 5.28
7094 11848 4.274950 AGTCAACTTGTCAATTGTTACCCG 59.725 41.667 5.13 0.00 0.00 5.28
7095 11849 5.519722 CAGTCAACTTGTCAATTGTTACCC 58.480 41.667 5.13 0.00 0.00 3.69
7274 12041 1.134699 TGAGGCTCCTACTGATTTGCG 60.135 52.381 12.86 0.00 0.00 4.85
7753 12592 1.971695 CAGGTGGGGCTTTTCGTCC 60.972 63.158 0.00 0.00 36.34 4.79
7754 12593 0.536460 TTCAGGTGGGGCTTTTCGTC 60.536 55.000 0.00 0.00 0.00 4.20
7755 12594 0.112412 ATTCAGGTGGGGCTTTTCGT 59.888 50.000 0.00 0.00 0.00 3.85
7756 12595 2.122783 TATTCAGGTGGGGCTTTTCG 57.877 50.000 0.00 0.00 0.00 3.46
7757 12596 6.551227 AGAAATATATTCAGGTGGGGCTTTTC 59.449 38.462 0.00 0.00 0.00 2.29
7758 12597 6.443832 AGAAATATATTCAGGTGGGGCTTTT 58.556 36.000 0.00 0.00 0.00 2.27
7759 12598 6.030727 AGAAATATATTCAGGTGGGGCTTT 57.969 37.500 0.00 0.00 0.00 3.51
7760 12599 5.134339 TGAGAAATATATTCAGGTGGGGCTT 59.866 40.000 0.00 0.00 0.00 4.35
7761 12600 4.665009 TGAGAAATATATTCAGGTGGGGCT 59.335 41.667 0.00 0.00 0.00 5.19
7762 12601 4.985538 TGAGAAATATATTCAGGTGGGGC 58.014 43.478 0.00 0.00 0.00 5.80
7763 12602 6.825721 GCTATGAGAAATATATTCAGGTGGGG 59.174 42.308 0.00 0.00 0.00 4.96
7764 12603 7.551974 CAGCTATGAGAAATATATTCAGGTGGG 59.448 40.741 0.00 0.00 0.00 4.61
7765 12604 7.065563 GCAGCTATGAGAAATATATTCAGGTGG 59.934 40.741 0.00 0.00 0.00 4.61
7766 12605 7.605309 TGCAGCTATGAGAAATATATTCAGGTG 59.395 37.037 0.00 6.68 0.00 4.00
7819 12658 0.178990 AACTCTTGTGTTCCCCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
7826 12665 6.422776 TCTGAAAACTCAACTCTTGTGTTC 57.577 37.500 3.60 0.00 43.98 3.18
7828 12667 7.552687 TGTAATCTGAAAACTCAACTCTTGTGT 59.447 33.333 0.00 0.00 38.87 3.72
7866 12708 4.016479 TCACCTACCTAGAATCCCTGAACT 60.016 45.833 0.00 0.00 0.00 3.01
7887 12729 4.746309 GCATGCTGGCCTGGGTCA 62.746 66.667 11.37 1.24 0.00 4.02
7900 12744 1.843368 ACCATGAACAAGGAGGCATG 58.157 50.000 3.07 0.00 38.22 4.06
7909 12753 4.462508 TTGACTGCAAAACCATGAACAA 57.537 36.364 0.00 0.00 0.00 2.83
7910 12754 4.462508 TTTGACTGCAAAACCATGAACA 57.537 36.364 0.00 0.00 40.82 3.18
7920 12764 3.932089 GCTTTGGTCTTTTTGACTGCAAA 59.068 39.130 0.00 0.00 44.74 3.68
7923 12767 3.163630 TGCTTTGGTCTTTTTGACTGC 57.836 42.857 0.00 0.00 44.74 4.40
7929 12773 5.622233 GCCGATCTTATGCTTTGGTCTTTTT 60.622 40.000 0.00 0.00 0.00 1.94
7941 12785 2.064762 CTGCTACTGCCGATCTTATGC 58.935 52.381 0.00 0.00 38.71 3.14
7943 12787 3.551046 CGTTCTGCTACTGCCGATCTTAT 60.551 47.826 0.00 0.00 38.71 1.73
7951 12795 1.630148 CTGTACGTTCTGCTACTGCC 58.370 55.000 0.00 0.00 38.71 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.