Multiple sequence alignment - TraesCS1D01G107400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G107400 chr1D 100.000 7374 0 0 1 7374 100328706 100321333 0.000000e+00 13618.0
1 TraesCS1D01G107400 chr1D 87.426 509 47 11 186 679 439218900 439219406 2.990000e-158 569.0
2 TraesCS1D01G107400 chr1D 94.776 134 6 1 1 133 378291453 378291320 2.700000e-49 207.0
3 TraesCS1D01G107400 chr1B 93.161 5308 251 48 1532 6789 151472976 151467731 0.000000e+00 7688.0
4 TraesCS1D01G107400 chr1B 92.434 793 44 7 751 1537 151473902 151473120 0.000000e+00 1118.0
5 TraesCS1D01G107400 chr1B 89.231 195 16 5 7045 7237 151467237 151467046 9.560000e-59 239.0
6 TraesCS1D01G107400 chr1B 98.496 133 2 0 1 133 61014597 61014729 1.240000e-57 235.0
7 TraesCS1D01G107400 chr1B 93.220 118 8 0 6923 7040 151467601 151467484 2.730000e-39 174.0
8 TraesCS1D01G107400 chr1B 89.630 135 13 1 7240 7374 175658361 175658228 3.540000e-38 171.0
9 TraesCS1D01G107400 chr1A 95.365 3689 104 25 3120 6789 95858283 95854643 0.000000e+00 5803.0
10 TraesCS1D01G107400 chr1A 94.619 1115 37 9 1532 2630 95860137 95859030 0.000000e+00 1705.0
11 TraesCS1D01G107400 chr1A 93.231 783 32 6 756 1537 95861040 95860278 0.000000e+00 1133.0
12 TraesCS1D01G107400 chr1A 94.737 513 20 3 2621 3133 95858868 95858363 0.000000e+00 791.0
13 TraesCS1D01G107400 chr1A 89.028 319 25 5 6923 7241 95854388 95854080 3.230000e-103 387.0
14 TraesCS1D01G107400 chr1A 92.593 135 9 1 7240 7374 533756208 533756341 7.550000e-45 193.0
15 TraesCS1D01G107400 chr1A 90.541 74 6 1 691 764 95862284 95862212 6.090000e-16 97.1
16 TraesCS1D01G107400 chr2D 88.730 559 47 9 131 679 485576469 485577021 0.000000e+00 669.0
17 TraesCS1D01G107400 chr2D 96.212 132 5 0 1 132 485576238 485576369 4.480000e-52 217.0
18 TraesCS1D01G107400 chr2D 94.891 137 6 1 7238 7374 61777891 61778026 5.800000e-51 213.0
19 TraesCS1D01G107400 chr3D 87.971 557 53 8 135 679 496668913 496669467 0.000000e+00 645.0
20 TraesCS1D01G107400 chr3D 86.282 554 64 8 135 679 378569285 378569835 6.370000e-165 592.0
21 TraesCS1D01G107400 chr3D 99.495 198 0 1 6550 6746 518986001 518986198 7.030000e-95 359.0
22 TraesCS1D01G107400 chr6D 85.331 559 59 20 135 679 423177566 423177017 2.320000e-154 556.0
23 TraesCS1D01G107400 chr6D 82.560 539 80 10 135 663 396520444 396520978 5.210000e-126 462.0
24 TraesCS1D01G107400 chr6D 97.744 133 3 0 1 133 436242117 436241985 5.750000e-56 230.0
25 TraesCS1D01G107400 chr6D 94.697 132 7 0 1 132 97021771 97021640 9.700000e-49 206.0
26 TraesCS1D01G107400 chr6D 94.737 133 6 1 7242 7374 452134029 452134160 9.700000e-49 206.0
27 TraesCS1D01G107400 chr6A 84.409 558 71 9 135 679 486834148 486834702 1.090000e-147 534.0
28 TraesCS1D01G107400 chr2B 85.336 491 57 10 135 617 6544571 6544088 1.850000e-135 494.0
29 TraesCS1D01G107400 chr2B 91.045 134 11 1 7241 7374 584125338 584125470 5.880000e-41 180.0
30 TraesCS1D01G107400 chr7A 83.953 511 67 12 135 635 85955954 85956459 6.690000e-130 475.0
31 TraesCS1D01G107400 chr7A 89.630 135 13 1 7240 7374 39140753 39140886 3.540000e-38 171.0
32 TraesCS1D01G107400 chr7D 95.489 133 6 0 1 133 538152599 538152731 5.800000e-51 213.0
33 TraesCS1D01G107400 chr7D 92.908 141 9 1 7234 7374 4703022 4702883 3.490000e-48 204.0
34 TraesCS1D01G107400 chr7D 93.893 131 7 1 7244 7374 104684830 104684959 5.840000e-46 196.0
35 TraesCS1D01G107400 chr4A 94.737 133 7 0 1 133 649815164 649815032 2.700000e-49 207.0
36 TraesCS1D01G107400 chrUn 94.697 132 7 0 1 132 235804366 235804497 9.700000e-49 206.0
37 TraesCS1D01G107400 chrUn 94.697 132 7 0 1 132 310578917 310578786 9.700000e-49 206.0
38 TraesCS1D01G107400 chrUn 90.370 135 12 1 7240 7374 76049084 76048951 7.600000e-40 176.0
39 TraesCS1D01G107400 chr6B 89.091 55 2 3 6870 6924 15898712 15898662 1.720000e-06 65.8
40 TraesCS1D01G107400 chr6B 89.091 55 2 3 6870 6924 15918570 15918520 1.720000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G107400 chr1D 100321333 100328706 7373 True 13618.000000 13618 100.000000 1 7374 1 chr1D.!!$R1 7373
1 TraesCS1D01G107400 chr1D 439218900 439219406 506 False 569.000000 569 87.426000 186 679 1 chr1D.!!$F1 493
2 TraesCS1D01G107400 chr1B 151467046 151473902 6856 True 2304.750000 7688 92.011500 751 7237 4 chr1B.!!$R2 6486
3 TraesCS1D01G107400 chr1A 95854080 95862284 8204 True 1652.683333 5803 92.920167 691 7241 6 chr1A.!!$R1 6550
4 TraesCS1D01G107400 chr2D 485576238 485577021 783 False 443.000000 669 92.471000 1 679 2 chr2D.!!$F2 678
5 TraesCS1D01G107400 chr3D 496668913 496669467 554 False 645.000000 645 87.971000 135 679 1 chr3D.!!$F2 544
6 TraesCS1D01G107400 chr3D 378569285 378569835 550 False 592.000000 592 86.282000 135 679 1 chr3D.!!$F1 544
7 TraesCS1D01G107400 chr6D 423177017 423177566 549 True 556.000000 556 85.331000 135 679 1 chr6D.!!$R2 544
8 TraesCS1D01G107400 chr6D 396520444 396520978 534 False 462.000000 462 82.560000 135 663 1 chr6D.!!$F1 528
9 TraesCS1D01G107400 chr6A 486834148 486834702 554 False 534.000000 534 84.409000 135 679 1 chr6A.!!$F1 544
10 TraesCS1D01G107400 chr7A 85955954 85956459 505 False 475.000000 475 83.953000 135 635 1 chr7A.!!$F2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 882 0.106868 TAGAGGAGGACCGCATCGAA 60.107 55.000 4.18 0.00 41.83 3.71 F
1316 2640 0.390998 GAGGAGGTCAGTGCTGCTTC 60.391 60.000 0.00 0.00 0.00 3.86 F
1319 2643 0.390998 GAGGTCAGTGCTGCTTCTCC 60.391 60.000 0.00 0.00 0.00 3.71 F
2946 4613 0.536006 GATAGCATGGACAGGGGTGC 60.536 60.000 0.00 0.00 37.84 5.01 F
3880 5647 2.025898 GCTCTAGGAAGCGAGGTAACT 58.974 52.381 0.00 0.00 41.04 2.24 F
4383 6176 2.095692 GGTGTTTTTGCAAGCAAGGTTG 59.904 45.455 7.60 7.58 37.24 3.77 F
5694 7496 0.240945 CCAGCTTTAAGGCCAACACG 59.759 55.000 5.01 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 3245 0.831288 CAACCCCTGCACCAATTGGA 60.831 55.000 31.22 7.88 38.94 3.53 R
3064 4731 2.025416 TGCATGGTAGGGCTGTAAACAT 60.025 45.455 0.00 0.00 0.00 2.71 R
3101 4768 2.106477 TGGTTCGAATGCATGCACTA 57.894 45.000 25.37 3.82 0.00 2.74 R
4100 5892 0.933097 GTGTGAGTATCTGCATGCCG 59.067 55.000 16.68 9.39 34.92 5.69 R
4913 6713 2.036346 ACTCACATTTTCCAAGCCAAGC 59.964 45.455 0.00 0.00 0.00 4.01 R
6104 7917 1.497991 CCGCTTTGAAGAGTTCGTCA 58.502 50.000 0.00 0.00 32.73 4.35 R
7346 9666 0.180642 TCCGTGTGTGCCCTTTGTAA 59.819 50.000 0.00 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.284995 GCCACCACCTCCTCCTCT 60.285 66.667 0.00 0.00 0.00 3.69
26 27 1.118838 CCACCTCCTCCTCTCATGAC 58.881 60.000 0.00 0.00 0.00 3.06
84 85 1.461127 GAAGACTCCATGAACACGCAC 59.539 52.381 0.00 0.00 0.00 5.34
340 443 2.792599 GTCGACCTCGTCAGCGAT 59.207 61.111 3.51 0.00 46.80 4.58
354 457 1.794785 GCGATGACGACGACAACGA 60.795 57.895 27.31 0.00 41.06 3.85
544 683 7.575332 TTCGCCATTTTATTCTAGTTTTTGC 57.425 32.000 0.00 0.00 0.00 3.68
572 715 0.323629 ATCACGTTCACCCCGACATT 59.676 50.000 0.00 0.00 0.00 2.71
666 810 1.970092 TCCCAAACGGACGAAAACAT 58.030 45.000 0.00 0.00 34.86 2.71
669 813 1.001815 CCAAACGGACGAAAACATGCT 60.002 47.619 0.00 0.00 0.00 3.79
679 823 3.312973 ACGAAAACATGCTAAAACGGACA 59.687 39.130 0.00 0.00 0.00 4.02
680 824 4.023536 ACGAAAACATGCTAAAACGGACAT 60.024 37.500 0.00 0.00 0.00 3.06
681 825 4.915085 CGAAAACATGCTAAAACGGACATT 59.085 37.500 0.00 0.00 0.00 2.71
682 826 5.401079 CGAAAACATGCTAAAACGGACATTT 59.599 36.000 0.00 0.00 0.00 2.32
683 827 6.074569 CGAAAACATGCTAAAACGGACATTTT 60.075 34.615 0.00 0.00 35.89 1.82
684 828 6.523676 AAACATGCTAAAACGGACATTTTG 57.476 33.333 0.00 0.00 33.80 2.44
685 829 4.555262 ACATGCTAAAACGGACATTTTGG 58.445 39.130 0.00 0.00 33.80 3.28
686 830 3.651803 TGCTAAAACGGACATTTTGGG 57.348 42.857 0.00 0.00 33.80 4.12
687 831 2.297597 TGCTAAAACGGACATTTTGGGG 59.702 45.455 0.00 0.00 33.80 4.96
688 832 2.297880 GCTAAAACGGACATTTTGGGGT 59.702 45.455 0.00 0.00 33.80 4.95
689 833 3.613193 GCTAAAACGGACATTTTGGGGTC 60.613 47.826 0.00 0.00 33.80 4.46
690 834 0.955905 AAACGGACATTTTGGGGTCG 59.044 50.000 0.00 0.00 34.87 4.79
691 835 0.108963 AACGGACATTTTGGGGTCGA 59.891 50.000 0.00 0.00 34.87 4.20
692 836 0.321298 ACGGACATTTTGGGGTCGAG 60.321 55.000 0.00 0.00 34.87 4.04
693 837 0.321298 CGGACATTTTGGGGTCGAGT 60.321 55.000 0.00 0.00 34.87 4.18
694 838 1.880646 CGGACATTTTGGGGTCGAGTT 60.881 52.381 0.00 0.00 34.87 3.01
695 839 1.539827 GGACATTTTGGGGTCGAGTTG 59.460 52.381 0.00 0.00 34.87 3.16
696 840 1.539827 GACATTTTGGGGTCGAGTTGG 59.460 52.381 0.00 0.00 0.00 3.77
697 841 0.243636 CATTTTGGGGTCGAGTTGGC 59.756 55.000 0.00 0.00 0.00 4.52
698 842 0.898326 ATTTTGGGGTCGAGTTGGCC 60.898 55.000 0.00 0.00 0.00 5.36
699 843 2.002018 TTTTGGGGTCGAGTTGGCCT 62.002 55.000 3.32 0.00 0.00 5.19
700 844 1.128809 TTTGGGGTCGAGTTGGCCTA 61.129 55.000 3.32 0.00 0.00 3.93
735 879 0.523966 CGATAGAGGAGGACCGCATC 59.476 60.000 1.16 1.16 41.83 3.91
738 882 0.106868 TAGAGGAGGACCGCATCGAA 60.107 55.000 4.18 0.00 41.83 3.71
749 893 1.278172 CGCATCGAACGGCTATGGAG 61.278 60.000 3.46 0.00 0.00 3.86
758 902 1.040646 CGGCTATGGAGAGTGCCTTA 58.959 55.000 0.00 0.00 42.90 2.69
814 2138 2.355837 CACTGACGTGTGGACCCG 60.356 66.667 0.00 0.00 36.39 5.28
820 2144 3.299977 CGTGTGGACCCGACCTCA 61.300 66.667 0.00 0.00 0.00 3.86
1260 2584 1.609555 GACCTCGTAATCATCGGAGCT 59.390 52.381 0.00 0.00 0.00 4.09
1315 2639 1.676384 GAGGAGGTCAGTGCTGCTT 59.324 57.895 0.00 0.00 0.00 3.91
1316 2640 0.390998 GAGGAGGTCAGTGCTGCTTC 60.391 60.000 0.00 0.00 0.00 3.86
1317 2641 0.835543 AGGAGGTCAGTGCTGCTTCT 60.836 55.000 0.00 0.00 0.00 2.85
1318 2642 0.390998 GGAGGTCAGTGCTGCTTCTC 60.391 60.000 0.00 2.05 0.00 2.87
1319 2643 0.390998 GAGGTCAGTGCTGCTTCTCC 60.391 60.000 0.00 0.00 0.00 3.71
1320 2644 0.835543 AGGTCAGTGCTGCTTCTCCT 60.836 55.000 0.00 1.15 0.00 3.69
1345 2669 6.728200 TGTGTTCATGATTTTCTGTCAACTC 58.272 36.000 0.00 0.00 0.00 3.01
1346 2670 6.543465 TGTGTTCATGATTTTCTGTCAACTCT 59.457 34.615 0.00 0.00 0.00 3.24
1368 2692 6.211515 TCTTCAGAGTTAAACCACGTTACTC 58.788 40.000 0.00 0.00 33.70 2.59
1376 2700 6.870439 AGTTAAACCACGTTACTCTTCATACC 59.130 38.462 0.00 0.00 0.00 2.73
1377 2701 3.498927 ACCACGTTACTCTTCATACCG 57.501 47.619 0.00 0.00 0.00 4.02
1382 2706 3.691118 ACGTTACTCTTCATACCGTGCTA 59.309 43.478 0.00 0.00 0.00 3.49
1383 2707 4.156556 ACGTTACTCTTCATACCGTGCTAA 59.843 41.667 0.00 0.00 0.00 3.09
1388 2712 5.169295 ACTCTTCATACCGTGCTAAAACTC 58.831 41.667 0.00 0.00 0.00 3.01
1402 2727 7.219922 GTGCTAAAACTCACATTTAATTTGCG 58.780 34.615 0.00 0.00 33.63 4.85
1495 2820 3.181462 TGCTCGAGGATTTCATGCAGTAT 60.181 43.478 15.58 0.00 32.38 2.12
1525 2855 4.571176 GGTTCCTCGTGATCTGTTAAATCC 59.429 45.833 0.00 0.00 0.00 3.01
1528 2858 4.466370 TCCTCGTGATCTGTTAAATCCAGT 59.534 41.667 0.00 0.00 0.00 4.00
1565 3048 2.294074 GTTGACCTGTTGGCAGTGTAA 58.706 47.619 0.00 0.00 41.02 2.41
1586 3069 8.784043 GTGTAATTGGATTGTTGAAGTTAGTCT 58.216 33.333 0.00 0.00 0.00 3.24
1587 3070 8.783093 TGTAATTGGATTGTTGAAGTTAGTCTG 58.217 33.333 0.00 0.00 0.00 3.51
1625 3116 8.882415 TTGGTGATATAACCGAGAAATAGAAC 57.118 34.615 4.69 0.00 43.73 3.01
1717 3208 6.834959 ATAAGTATGTCTGACATTGCTTCG 57.165 37.500 27.67 0.00 39.88 3.79
1967 3459 6.100004 AGAACAGGTCATAGAATGTGTTACG 58.900 40.000 0.00 0.00 30.25 3.18
2047 3539 6.449635 AAGTCAACAATTCAACAGTAAGCA 57.550 33.333 0.00 0.00 0.00 3.91
2048 3540 6.639632 AGTCAACAATTCAACAGTAAGCAT 57.360 33.333 0.00 0.00 0.00 3.79
2096 3588 5.009631 TCAGCATGCCTGTTTAACACTTAT 58.990 37.500 15.66 0.00 42.38 1.73
2287 3781 4.883083 TGCTCTGTCCTTACAAGTTACAG 58.117 43.478 12.27 12.27 38.48 2.74
2458 3952 4.104383 TCTTGCCTCCAAAATCAGAAGT 57.896 40.909 0.00 0.00 0.00 3.01
2560 4055 3.431912 TCATTTACTTGCTGCGTGTACAG 59.568 43.478 0.00 0.00 40.80 2.74
2616 4111 7.023197 TCAACCTTTGTAAGCTAACACTTTC 57.977 36.000 0.00 0.00 0.00 2.62
2701 4367 5.491982 AGGTTGATGACTGTATCTGGAAAC 58.508 41.667 0.00 0.00 0.00 2.78
2738 4405 0.994263 GCATGCTTGTTGATTTCGCC 59.006 50.000 11.37 0.00 0.00 5.54
2946 4613 0.536006 GATAGCATGGACAGGGGTGC 60.536 60.000 0.00 0.00 37.84 5.01
3003 4670 3.622166 AGGTTTCGAAATCGTATGGGT 57.378 42.857 14.69 0.00 40.80 4.51
3004 4671 3.946606 AGGTTTCGAAATCGTATGGGTT 58.053 40.909 14.69 0.00 40.80 4.11
3005 4672 4.329392 AGGTTTCGAAATCGTATGGGTTT 58.671 39.130 14.69 0.00 40.80 3.27
3006 4673 4.393990 AGGTTTCGAAATCGTATGGGTTTC 59.606 41.667 14.69 0.00 40.80 2.78
3007 4674 4.154556 GGTTTCGAAATCGTATGGGTTTCA 59.845 41.667 14.69 0.00 40.80 2.69
3046 4713 4.347583 ACCACAACATGTTTGGGATTGAAT 59.652 37.500 28.17 13.46 34.41 2.57
3064 4731 6.531503 TTGAATGGGTTTCTTGTTGTTGTA 57.468 33.333 0.00 0.00 35.23 2.41
3101 4768 5.452255 ACCATGCAGGAATTGTCATAGAAT 58.548 37.500 0.00 0.00 41.22 2.40
3445 5206 5.242393 ACAGAAAACAGACATGCAAGCTATT 59.758 36.000 0.00 0.00 0.00 1.73
3536 5298 8.553459 TGTTGATGCAGTTTTTCCTTTTTAAA 57.447 26.923 0.00 0.00 0.00 1.52
3562 5324 4.852134 TTGTGATGTTCCAATTGTCCTG 57.148 40.909 4.43 0.00 0.00 3.86
3614 5376 7.313646 TGTTTCTCTAAGTGATACGAAGGAAG 58.686 38.462 0.00 0.00 0.00 3.46
3681 5445 2.485426 CCATTGCACGAATCTTGACACT 59.515 45.455 0.00 0.00 0.00 3.55
3682 5446 3.058016 CCATTGCACGAATCTTGACACTT 60.058 43.478 0.00 0.00 0.00 3.16
3683 5447 4.154015 CCATTGCACGAATCTTGACACTTA 59.846 41.667 0.00 0.00 0.00 2.24
3685 5449 5.940192 TTGCACGAATCTTGACACTTATT 57.060 34.783 0.00 0.00 0.00 1.40
3686 5450 5.281693 TGCACGAATCTTGACACTTATTG 57.718 39.130 0.00 0.00 0.00 1.90
3687 5451 4.091424 GCACGAATCTTGACACTTATTGC 58.909 43.478 0.00 0.00 0.00 3.56
3688 5452 4.142816 GCACGAATCTTGACACTTATTGCT 60.143 41.667 0.00 0.00 0.00 3.91
3689 5453 5.063438 GCACGAATCTTGACACTTATTGCTA 59.937 40.000 0.00 0.00 0.00 3.49
3690 5454 6.700020 CACGAATCTTGACACTTATTGCTAG 58.300 40.000 0.00 0.00 0.00 3.42
3691 5455 5.292101 ACGAATCTTGACACTTATTGCTAGC 59.708 40.000 8.10 8.10 0.00 3.42
3715 5482 9.056005 AGCGCTTGTATTGATTATCATTTCTTA 57.944 29.630 2.64 0.00 0.00 2.10
3880 5647 2.025898 GCTCTAGGAAGCGAGGTAACT 58.974 52.381 0.00 0.00 41.04 2.24
3909 5676 6.873076 AGTTCTTGCTGTCAACAAATTTGAAA 59.127 30.769 24.64 6.51 0.00 2.69
4039 5810 9.595823 CAAAAGATTCCTATCATTTGCATCTTT 57.404 29.630 0.00 0.00 40.46 2.52
4048 5819 9.472361 CCTATCATTTGCATCTTTATTTCTTGG 57.528 33.333 0.00 0.00 0.00 3.61
4051 5822 9.760077 ATCATTTGCATCTTTATTTCTTGGATC 57.240 29.630 0.00 0.00 0.00 3.36
4052 5823 8.751242 TCATTTGCATCTTTATTTCTTGGATCA 58.249 29.630 0.00 0.00 0.00 2.92
4053 5824 9.031360 CATTTGCATCTTTATTTCTTGGATCAG 57.969 33.333 0.00 0.00 0.00 2.90
4054 5825 7.707624 TTGCATCTTTATTTCTTGGATCAGT 57.292 32.000 0.00 0.00 0.00 3.41
4055 5826 7.092137 TGCATCTTTATTTCTTGGATCAGTG 57.908 36.000 0.00 0.00 0.00 3.66
4056 5827 6.095860 TGCATCTTTATTTCTTGGATCAGTGG 59.904 38.462 0.00 0.00 0.00 4.00
4057 5828 6.319658 GCATCTTTATTTCTTGGATCAGTGGA 59.680 38.462 0.00 0.00 0.00 4.02
4058 5829 7.014038 GCATCTTTATTTCTTGGATCAGTGGAT 59.986 37.037 0.00 0.00 36.13 3.41
4383 6176 2.095692 GGTGTTTTTGCAAGCAAGGTTG 59.904 45.455 7.60 7.58 37.24 3.77
4390 6183 4.339872 TTGCAAGCAAGGTTGATTTCAT 57.660 36.364 15.44 0.00 34.06 2.57
4405 6199 7.337942 GGTTGATTTCATCATCCACTCTTAACT 59.662 37.037 8.42 0.00 44.74 2.24
4642 6436 2.159462 GCAGTTCTGCTGGCTATGTTTC 60.159 50.000 16.29 0.00 45.14 2.78
4708 6502 7.719778 TCTTGTGATGGATGATTTAATCGAG 57.280 36.000 0.23 0.00 0.00 4.04
4754 6548 5.125356 CACTCCACACTTGCCAATATATCA 58.875 41.667 0.00 0.00 0.00 2.15
4795 6593 7.555965 TCTTGCTTAGCTCATTCATGTAAGTA 58.444 34.615 5.60 0.00 0.00 2.24
4826 6624 9.874205 ATATAAACAACATATTTGCTGCACTTT 57.126 25.926 0.00 0.00 0.00 2.66
4913 6713 3.443045 GCACCATTCACCAGCGGG 61.443 66.667 0.00 0.00 41.29 6.13
5112 6912 7.223582 TGTTGCATAAACAAATTGTTACACTGG 59.776 33.333 12.11 1.00 45.85 4.00
5113 6913 6.219473 TGCATAAACAAATTGTTACACTGGG 58.781 36.000 12.11 0.03 40.14 4.45
5256 7057 4.643784 GGAATCTCAGGTACTTCCGAAGTA 59.356 45.833 15.67 15.67 42.81 2.24
5257 7058 5.302313 GGAATCTCAGGTACTTCCGAAGTAT 59.698 44.000 21.15 6.46 45.05 2.12
5462 7263 5.360429 GGTAAGTCGAGGATCTTAACTCCTT 59.640 44.000 3.84 0.00 43.29 3.36
5492 7293 5.575606 GTCTTGTTCATGCATTTTCCATCTG 59.424 40.000 0.00 0.00 0.00 2.90
5597 7398 6.737254 TCGAAAAGAGAAAAACACTTGACT 57.263 33.333 0.00 0.00 30.45 3.41
5661 7463 4.271291 GCTGATAACGAAGGATTTGAGGTC 59.729 45.833 0.00 0.00 32.44 3.85
5694 7496 0.240945 CCAGCTTTAAGGCCAACACG 59.759 55.000 5.01 0.00 0.00 4.49
5784 7586 4.432712 ACTTGTTGCATTGTTTTCAGACC 58.567 39.130 0.00 0.00 0.00 3.85
5792 7594 4.216257 GCATTGTTTTCAGACCTTGCTCTA 59.784 41.667 0.00 0.00 0.00 2.43
5967 7778 3.370103 CCATTGCCCTAGGAACTCGTTTA 60.370 47.826 11.48 0.00 41.75 2.01
6012 7824 1.564348 TCTTTACTCCCCTCCATTGCC 59.436 52.381 0.00 0.00 0.00 4.52
6104 7917 2.354403 CCCAACGTTATCCGAAGTCCTT 60.354 50.000 0.00 0.00 40.70 3.36
6146 7959 4.679639 GCCAAGGTACAGATCGATGTGTTA 60.680 45.833 30.21 15.05 35.72 2.41
6721 8548 4.393680 TGTCGTGCCATAAGTACCAAAATC 59.606 41.667 0.00 0.00 0.00 2.17
6834 8912 0.466543 AACACACCGTAAGCTGTCCA 59.533 50.000 0.00 0.00 0.00 4.02
6852 8930 6.473455 GCTGTCCATAATTGATTTACTTGCAC 59.527 38.462 0.00 0.00 0.00 4.57
6861 8939 8.986477 AATTGATTTACTTGCACAAATACTCC 57.014 30.769 0.00 0.00 0.00 3.85
6862 8940 6.509418 TGATTTACTTGCACAAATACTCCC 57.491 37.500 0.00 0.00 0.00 4.30
6863 8941 6.245408 TGATTTACTTGCACAAATACTCCCT 58.755 36.000 0.00 0.00 0.00 4.20
6864 8942 6.374333 TGATTTACTTGCACAAATACTCCCTC 59.626 38.462 0.00 0.00 0.00 4.30
6865 8943 5.499004 TTACTTGCACAAATACTCCCTCT 57.501 39.130 0.00 0.00 0.00 3.69
6866 8944 3.679389 ACTTGCACAAATACTCCCTCTG 58.321 45.455 0.00 0.00 0.00 3.35
6867 8945 3.073062 ACTTGCACAAATACTCCCTCTGT 59.927 43.478 0.00 0.00 0.00 3.41
6868 8946 3.334583 TGCACAAATACTCCCTCTGTC 57.665 47.619 0.00 0.00 0.00 3.51
6869 8947 2.906389 TGCACAAATACTCCCTCTGTCT 59.094 45.455 0.00 0.00 0.00 3.41
6870 8948 3.327757 TGCACAAATACTCCCTCTGTCTT 59.672 43.478 0.00 0.00 0.00 3.01
6871 8949 4.530553 TGCACAAATACTCCCTCTGTCTTA 59.469 41.667 0.00 0.00 0.00 2.10
6872 8950 5.112686 GCACAAATACTCCCTCTGTCTTAG 58.887 45.833 0.00 0.00 0.00 2.18
6873 8951 5.337652 GCACAAATACTCCCTCTGTCTTAGT 60.338 44.000 0.00 0.00 0.00 2.24
6874 8952 6.127423 GCACAAATACTCCCTCTGTCTTAGTA 60.127 42.308 0.00 0.00 0.00 1.82
6875 8953 7.259161 CACAAATACTCCCTCTGTCTTAGTAC 58.741 42.308 0.00 0.00 0.00 2.73
6876 8954 6.952358 ACAAATACTCCCTCTGTCTTAGTACA 59.048 38.462 0.00 0.00 0.00 2.90
6877 8955 7.453752 ACAAATACTCCCTCTGTCTTAGTACAA 59.546 37.037 0.00 0.00 0.00 2.41
6878 8956 8.311836 CAAATACTCCCTCTGTCTTAGTACAAA 58.688 37.037 0.00 0.00 0.00 2.83
6879 8957 5.986501 ACTCCCTCTGTCTTAGTACAAAG 57.013 43.478 0.00 0.00 0.00 2.77
6880 8958 5.395611 ACTCCCTCTGTCTTAGTACAAAGT 58.604 41.667 0.00 0.00 0.00 2.66
6881 8959 5.839606 ACTCCCTCTGTCTTAGTACAAAGTT 59.160 40.000 0.00 0.00 0.00 2.66
6882 8960 6.097915 TCCCTCTGTCTTAGTACAAAGTTG 57.902 41.667 0.00 0.00 0.00 3.16
6883 8961 5.601313 TCCCTCTGTCTTAGTACAAAGTTGT 59.399 40.000 1.75 1.75 44.86 3.32
6884 8962 6.779049 TCCCTCTGTCTTAGTACAAAGTTGTA 59.221 38.462 0.00 0.00 42.35 2.41
6897 8975 6.604735 ACAAAGTTGTACACTAAGCTTGAG 57.395 37.500 9.86 5.36 40.16 3.02
6898 8976 6.346096 ACAAAGTTGTACACTAAGCTTGAGA 58.654 36.000 9.86 0.00 40.16 3.27
6899 8977 6.258068 ACAAAGTTGTACACTAAGCTTGAGAC 59.742 38.462 9.86 0.71 40.16 3.36
6900 8978 5.531122 AGTTGTACACTAAGCTTGAGACA 57.469 39.130 9.86 3.44 31.97 3.41
6901 8979 5.914033 AGTTGTACACTAAGCTTGAGACAA 58.086 37.500 9.86 9.31 31.97 3.18
6902 8980 6.525629 AGTTGTACACTAAGCTTGAGACAAT 58.474 36.000 9.86 1.40 31.97 2.71
6903 8981 6.992715 AGTTGTACACTAAGCTTGAGACAATT 59.007 34.615 9.86 6.49 31.97 2.32
6904 8982 8.148351 AGTTGTACACTAAGCTTGAGACAATTA 58.852 33.333 9.86 0.00 31.97 1.40
6905 8983 8.936864 GTTGTACACTAAGCTTGAGACAATTAT 58.063 33.333 9.86 0.00 31.11 1.28
6906 8984 9.502091 TTGTACACTAAGCTTGAGACAATTATT 57.498 29.630 9.86 0.00 0.00 1.40
6907 8985 9.502091 TGTACACTAAGCTTGAGACAATTATTT 57.498 29.630 9.86 0.00 0.00 1.40
6911 8989 9.994432 CACTAAGCTTGAGACAATTATTTTAGG 57.006 33.333 9.86 0.00 0.00 2.69
6912 8990 9.959721 ACTAAGCTTGAGACAATTATTTTAGGA 57.040 29.630 9.86 0.00 0.00 2.94
6914 8992 7.308782 AGCTTGAGACAATTATTTTAGGACG 57.691 36.000 0.00 0.00 0.00 4.79
6915 8993 7.103641 AGCTTGAGACAATTATTTTAGGACGA 58.896 34.615 0.00 0.00 0.00 4.20
6916 8994 7.606456 AGCTTGAGACAATTATTTTAGGACGAA 59.394 33.333 0.00 0.00 0.00 3.85
6917 8995 7.905493 GCTTGAGACAATTATTTTAGGACGAAG 59.095 37.037 0.00 0.00 0.00 3.79
6918 8996 7.843490 TGAGACAATTATTTTAGGACGAAGG 57.157 36.000 0.00 0.00 0.00 3.46
6919 8997 6.821665 TGAGACAATTATTTTAGGACGAAGGG 59.178 38.462 0.00 0.00 0.00 3.95
6920 8998 6.954232 AGACAATTATTTTAGGACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
6921 8999 7.048512 AGACAATTATTTTAGGACGAAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
6922 9000 6.718294 ACAATTATTTTAGGACGAAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
6923 9001 7.854337 ACAATTATTTTAGGACGAAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
6964 9042 9.638239 ATTAAAATGACAAGCACGATAAATGTT 57.362 25.926 0.00 0.00 0.00 2.71
7019 9097 5.547181 AAAGAGGCTTTTGTAAGTATCGC 57.453 39.130 0.00 0.00 33.74 4.58
7042 9120 5.654209 GCCCATTCCTCAATAGAAGTTTCTT 59.346 40.000 0.00 0.00 38.70 2.52
7043 9121 6.153510 GCCCATTCCTCAATAGAAGTTTCTTT 59.846 38.462 0.00 0.00 38.70 2.52
7055 9375 6.223351 AGAAGTTTCTTTATAGAGGGGACG 57.777 41.667 0.00 0.00 32.55 4.79
7057 9377 5.595257 AGTTTCTTTATAGAGGGGACGAC 57.405 43.478 0.00 0.00 0.00 4.34
7072 9392 4.684484 GGACGACCCAGTTTTATAGGAT 57.316 45.455 0.00 0.00 34.14 3.24
7124 9444 3.157881 TCCCAACAATGCGACCATTTTA 58.842 40.909 0.00 0.00 39.60 1.52
7128 9448 4.111916 CAACAATGCGACCATTTTATCCC 58.888 43.478 0.00 0.00 39.60 3.85
7158 9478 1.812922 CAGCTCAGCCGGCTAAGTG 60.813 63.158 32.30 20.49 38.03 3.16
7165 9485 1.880027 CAGCCGGCTAAGTGTTTCTTT 59.120 47.619 32.30 0.00 37.56 2.52
7200 9520 4.511454 CCTCAGTCTCAAATGTCGTTGAAA 59.489 41.667 0.00 0.00 37.08 2.69
7205 9525 4.379793 GTCTCAAATGTCGTTGAAATGTGC 59.620 41.667 0.00 0.00 37.08 4.57
7241 9561 6.640499 CCAATTACACGACAACAATGACATTT 59.360 34.615 0.00 0.00 0.00 2.32
7242 9562 7.168972 CCAATTACACGACAACAATGACATTTT 59.831 33.333 0.00 0.00 0.00 1.82
7243 9563 8.538856 CAATTACACGACAACAATGACATTTTT 58.461 29.630 0.00 0.00 0.00 1.94
7266 9586 7.920160 TTTTTCTGAAACAAGGCAAAAGATT 57.080 28.000 1.58 0.00 0.00 2.40
7267 9587 7.920160 TTTTCTGAAACAAGGCAAAAGATTT 57.080 28.000 1.58 0.00 0.00 2.17
7268 9588 6.907206 TTCTGAAACAAGGCAAAAGATTTG 57.093 33.333 0.00 0.00 0.00 2.32
7269 9589 4.810491 TCTGAAACAAGGCAAAAGATTTGC 59.190 37.500 17.18 17.18 44.22 3.68
7283 9603 9.628746 GCAAAAGATTTGCCATTTTTATTGATT 57.371 25.926 15.12 0.00 39.38 2.57
7292 9612 9.874205 TTGCCATTTTTATTGATTAGGAAGAAG 57.126 29.630 0.00 0.00 0.00 2.85
7293 9613 9.253832 TGCCATTTTTATTGATTAGGAAGAAGA 57.746 29.630 0.00 0.00 0.00 2.87
7294 9614 9.741647 GCCATTTTTATTGATTAGGAAGAAGAG 57.258 33.333 0.00 0.00 0.00 2.85
7302 9622 8.785329 ATTGATTAGGAAGAAGAGAGTTGTTC 57.215 34.615 0.00 0.00 0.00 3.18
7303 9623 6.390721 TGATTAGGAAGAAGAGAGTTGTTCG 58.609 40.000 0.00 0.00 32.17 3.95
7304 9624 3.669251 AGGAAGAAGAGAGTTGTTCGG 57.331 47.619 0.00 0.00 32.17 4.30
7305 9625 2.966516 AGGAAGAAGAGAGTTGTTCGGT 59.033 45.455 0.00 0.00 32.17 4.69
7306 9626 3.388350 AGGAAGAAGAGAGTTGTTCGGTT 59.612 43.478 0.00 0.00 32.17 4.44
7307 9627 4.587684 AGGAAGAAGAGAGTTGTTCGGTTA 59.412 41.667 0.00 0.00 32.17 2.85
7308 9628 5.070047 AGGAAGAAGAGAGTTGTTCGGTTAA 59.930 40.000 0.00 0.00 32.17 2.01
7309 9629 5.932883 GGAAGAAGAGAGTTGTTCGGTTAAT 59.067 40.000 0.00 0.00 32.17 1.40
7310 9630 6.427242 GGAAGAAGAGAGTTGTTCGGTTAATT 59.573 38.462 0.00 0.00 32.17 1.40
7311 9631 7.601508 GGAAGAAGAGAGTTGTTCGGTTAATTA 59.398 37.037 0.00 0.00 32.17 1.40
7312 9632 8.535690 AAGAAGAGAGTTGTTCGGTTAATTAG 57.464 34.615 0.00 0.00 32.17 1.73
7313 9633 7.893658 AGAAGAGAGTTGTTCGGTTAATTAGA 58.106 34.615 0.00 0.00 32.17 2.10
7314 9634 8.030106 AGAAGAGAGTTGTTCGGTTAATTAGAG 58.970 37.037 0.00 0.00 32.17 2.43
7315 9635 6.631962 AGAGAGTTGTTCGGTTAATTAGAGG 58.368 40.000 0.00 0.00 0.00 3.69
7316 9636 6.436532 AGAGAGTTGTTCGGTTAATTAGAGGA 59.563 38.462 0.00 0.00 0.00 3.71
7317 9637 7.001099 AGAGTTGTTCGGTTAATTAGAGGAA 57.999 36.000 0.00 0.00 0.00 3.36
7318 9638 7.447594 AGAGTTGTTCGGTTAATTAGAGGAAA 58.552 34.615 0.00 0.00 0.00 3.13
7319 9639 7.935210 AGAGTTGTTCGGTTAATTAGAGGAAAA 59.065 33.333 0.00 0.00 0.00 2.29
7320 9640 7.868775 AGTTGTTCGGTTAATTAGAGGAAAAC 58.131 34.615 0.00 0.00 0.00 2.43
7321 9641 6.806388 TGTTCGGTTAATTAGAGGAAAACC 57.194 37.500 0.00 0.00 36.95 3.27
7325 9645 5.808042 GGTTAATTAGAGGAAAACCGGAC 57.192 43.478 9.46 0.00 31.09 4.79
7326 9646 4.330894 GGTTAATTAGAGGAAAACCGGACG 59.669 45.833 9.46 0.00 31.09 4.79
7327 9647 3.967332 AATTAGAGGAAAACCGGACGA 57.033 42.857 9.46 0.00 0.00 4.20
7328 9648 3.967332 ATTAGAGGAAAACCGGACGAA 57.033 42.857 9.46 0.00 0.00 3.85
7329 9649 3.749665 TTAGAGGAAAACCGGACGAAA 57.250 42.857 9.46 0.00 0.00 3.46
7330 9650 2.625695 AGAGGAAAACCGGACGAAAA 57.374 45.000 9.46 0.00 0.00 2.29
7331 9651 2.216046 AGAGGAAAACCGGACGAAAAC 58.784 47.619 9.46 0.00 0.00 2.43
7332 9652 1.265095 GAGGAAAACCGGACGAAAACC 59.735 52.381 9.46 1.87 0.00 3.27
7333 9653 1.134007 AGGAAAACCGGACGAAAACCT 60.134 47.619 9.46 4.41 0.00 3.50
7334 9654 2.104622 AGGAAAACCGGACGAAAACCTA 59.895 45.455 9.46 0.00 0.00 3.08
7335 9655 2.877786 GGAAAACCGGACGAAAACCTAA 59.122 45.455 9.46 0.00 0.00 2.69
7336 9656 3.314913 GGAAAACCGGACGAAAACCTAAA 59.685 43.478 9.46 0.00 0.00 1.85
7337 9657 4.022935 GGAAAACCGGACGAAAACCTAAAT 60.023 41.667 9.46 0.00 0.00 1.40
7338 9658 5.507817 GGAAAACCGGACGAAAACCTAAATT 60.508 40.000 9.46 0.00 0.00 1.82
7339 9659 6.293900 GGAAAACCGGACGAAAACCTAAATTA 60.294 38.462 9.46 0.00 0.00 1.40
7340 9660 5.611796 AACCGGACGAAAACCTAAATTAC 57.388 39.130 9.46 0.00 0.00 1.89
7341 9661 4.640364 ACCGGACGAAAACCTAAATTACA 58.360 39.130 9.46 0.00 0.00 2.41
7342 9662 5.062528 ACCGGACGAAAACCTAAATTACAA 58.937 37.500 9.46 0.00 0.00 2.41
7343 9663 5.530543 ACCGGACGAAAACCTAAATTACAAA 59.469 36.000 9.46 0.00 0.00 2.83
7344 9664 5.852755 CCGGACGAAAACCTAAATTACAAAC 59.147 40.000 0.00 0.00 0.00 2.93
7345 9665 5.852755 CGGACGAAAACCTAAATTACAAACC 59.147 40.000 0.00 0.00 0.00 3.27
7346 9666 6.293571 CGGACGAAAACCTAAATTACAAACCT 60.294 38.462 0.00 0.00 0.00 3.50
7347 9667 7.428020 GGACGAAAACCTAAATTACAAACCTT 58.572 34.615 0.00 0.00 0.00 3.50
7348 9668 8.567104 GGACGAAAACCTAAATTACAAACCTTA 58.433 33.333 0.00 0.00 0.00 2.69
7349 9669 9.385902 GACGAAAACCTAAATTACAAACCTTAC 57.614 33.333 0.00 0.00 0.00 2.34
7350 9670 8.901793 ACGAAAACCTAAATTACAAACCTTACA 58.098 29.630 0.00 0.00 0.00 2.41
7351 9671 9.733219 CGAAAACCTAAATTACAAACCTTACAA 57.267 29.630 0.00 0.00 0.00 2.41
7363 9683 0.591170 CCTTACAAAGGGCACACACG 59.409 55.000 0.00 0.00 45.27 4.49
7364 9684 0.591170 CTTACAAAGGGCACACACGG 59.409 55.000 0.00 0.00 0.00 4.94
7365 9685 0.180642 TTACAAAGGGCACACACGGA 59.819 50.000 0.00 0.00 0.00 4.69
7366 9686 0.533308 TACAAAGGGCACACACGGAC 60.533 55.000 0.00 0.00 0.00 4.79
7367 9687 2.590575 AAAGGGCACACACGGACG 60.591 61.111 0.00 0.00 0.00 4.79
7368 9688 3.096633 AAAGGGCACACACGGACGA 62.097 57.895 0.00 0.00 0.00 4.20
7369 9689 3.802418 AAGGGCACACACGGACGAC 62.802 63.158 0.00 0.00 0.00 4.34
7371 9691 4.295119 GGCACACACGGACGACCT 62.295 66.667 1.72 0.00 0.00 3.85
7372 9692 3.036084 GCACACACGGACGACCTG 61.036 66.667 1.72 2.40 0.00 4.00
7373 9693 2.355837 CACACACGGACGACCTGG 60.356 66.667 1.72 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.063341 CCTCCTCCTCCTCTGTCATGA 60.063 57.143 0.00 0.00 0.00 3.07
26 27 2.445654 GGGCCTCCTCCTCCTCTG 60.446 72.222 0.84 0.00 0.00 3.35
49 50 3.393800 AGTCTTCCATGACACGTTGAAG 58.606 45.455 0.00 0.00 39.27 3.02
132 133 2.046988 TGCACGACCAGCTCCATG 60.047 61.111 0.00 0.00 0.00 3.66
133 134 2.046892 GTGCACGACCAGCTCCAT 60.047 61.111 0.00 0.00 0.00 3.41
340 443 2.051971 CCGTCGTTGTCGTCGTCA 60.052 61.111 6.54 0.00 44.09 4.35
354 457 2.651361 CGTCTTCTCAGTGGCCGT 59.349 61.111 0.00 0.00 0.00 5.68
382 489 2.358125 CCGTGCCCGTTGATGTCA 60.358 61.111 0.00 0.00 0.00 3.58
460 572 2.159382 CACAAAACGGCCTAGTTCCAT 58.841 47.619 0.00 0.00 32.43 3.41
522 661 5.571357 ACGCAAAAACTAGAATAAAATGGCG 59.429 36.000 0.00 0.00 43.31 5.69
572 715 2.822255 GCGGCCGCACCTCAAATA 60.822 61.111 43.55 0.00 41.49 1.40
666 810 2.297597 CCCCAAAATGTCCGTTTTAGCA 59.702 45.455 0.00 0.00 30.56 3.49
669 813 2.553172 CGACCCCAAAATGTCCGTTTTA 59.447 45.455 0.00 0.00 30.56 1.52
679 823 0.898326 GGCCAACTCGACCCCAAAAT 60.898 55.000 0.00 0.00 0.00 1.82
680 824 1.529713 GGCCAACTCGACCCCAAAA 60.530 57.895 0.00 0.00 0.00 2.44
681 825 1.128809 TAGGCCAACTCGACCCCAAA 61.129 55.000 5.01 0.00 0.00 3.28
682 826 1.128809 TTAGGCCAACTCGACCCCAA 61.129 55.000 5.01 0.00 0.00 4.12
683 827 1.536907 TTAGGCCAACTCGACCCCA 60.537 57.895 5.01 0.00 0.00 4.96
684 828 1.078637 GTTAGGCCAACTCGACCCC 60.079 63.158 5.01 0.00 34.06 4.95
685 829 0.252197 ATGTTAGGCCAACTCGACCC 59.748 55.000 5.01 0.00 38.05 4.46
686 830 1.066430 TGATGTTAGGCCAACTCGACC 60.066 52.381 5.01 0.00 38.05 4.79
687 831 2.000447 GTGATGTTAGGCCAACTCGAC 59.000 52.381 5.01 2.50 38.05 4.20
688 832 1.066430 GGTGATGTTAGGCCAACTCGA 60.066 52.381 5.01 0.00 38.05 4.04
689 833 1.369625 GGTGATGTTAGGCCAACTCG 58.630 55.000 5.01 0.00 38.05 4.18
690 834 1.369625 CGGTGATGTTAGGCCAACTC 58.630 55.000 5.01 7.78 38.05 3.01
691 835 0.035439 CCGGTGATGTTAGGCCAACT 60.035 55.000 5.01 0.00 38.05 3.16
692 836 0.322187 ACCGGTGATGTTAGGCCAAC 60.322 55.000 6.12 8.36 37.67 3.77
693 837 0.322098 CACCGGTGATGTTAGGCCAA 60.322 55.000 31.31 0.00 0.00 4.52
694 838 1.298340 CACCGGTGATGTTAGGCCA 59.702 57.895 31.31 0.00 0.00 5.36
695 839 0.322187 AACACCGGTGATGTTAGGCC 60.322 55.000 40.21 0.00 38.51 5.19
696 840 0.802494 CAACACCGGTGATGTTAGGC 59.198 55.000 40.21 0.00 38.22 3.93
697 841 0.802494 GCAACACCGGTGATGTTAGG 59.198 55.000 40.21 17.45 38.22 2.69
698 842 0.442310 CGCAACACCGGTGATGTTAG 59.558 55.000 40.21 26.53 38.22 2.34
699 843 0.033642 TCGCAACACCGGTGATGTTA 59.966 50.000 40.21 25.50 38.22 2.41
700 844 0.605319 ATCGCAACACCGGTGATGTT 60.605 50.000 40.21 21.81 40.95 2.71
735 879 0.872021 GCACTCTCCATAGCCGTTCG 60.872 60.000 0.00 0.00 0.00 3.95
738 882 3.221222 GGCACTCTCCATAGCCGT 58.779 61.111 0.00 0.00 37.41 5.68
749 893 6.978080 TGTTTGACAAGAAAAATAAGGCACTC 59.022 34.615 0.00 0.00 38.49 3.51
814 2138 3.575351 AAGACGGCGCTGTGAGGTC 62.575 63.158 29.82 12.14 0.00 3.85
820 2144 1.228657 GGAAAAGAAGACGGCGCTGT 61.229 55.000 24.62 24.62 0.00 4.40
938 2262 0.462047 GTGTGGTATGAAGGGGAGCG 60.462 60.000 0.00 0.00 0.00 5.03
1315 2639 6.064060 ACAGAAAATCATGAACACAAGGAGA 58.936 36.000 0.00 0.00 0.00 3.71
1316 2640 6.016860 TGACAGAAAATCATGAACACAAGGAG 60.017 38.462 0.00 0.00 0.00 3.69
1317 2641 5.827267 TGACAGAAAATCATGAACACAAGGA 59.173 36.000 0.00 0.00 0.00 3.36
1318 2642 6.075762 TGACAGAAAATCATGAACACAAGG 57.924 37.500 0.00 0.00 0.00 3.61
1319 2643 7.198390 AGTTGACAGAAAATCATGAACACAAG 58.802 34.615 0.00 0.00 0.00 3.16
1320 2644 7.067372 AGAGTTGACAGAAAATCATGAACACAA 59.933 33.333 0.00 0.00 0.00 3.33
1345 2669 6.214399 AGAGTAACGTGGTTTAACTCTGAAG 58.786 40.000 11.25 0.00 38.92 3.02
1346 2670 6.152932 AGAGTAACGTGGTTTAACTCTGAA 57.847 37.500 11.25 0.00 38.92 3.02
1368 2692 4.688879 TGTGAGTTTTAGCACGGTATGAAG 59.311 41.667 0.00 0.00 37.83 3.02
1376 2700 7.219922 GCAAATTAAATGTGAGTTTTAGCACG 58.780 34.615 0.00 0.00 37.83 5.34
1377 2701 7.114247 TCGCAAATTAAATGTGAGTTTTAGCAC 59.886 33.333 4.33 0.00 32.70 4.40
1388 2712 4.402583 TCGAAGCTCGCAAATTAAATGTG 58.597 39.130 0.00 0.12 40.21 3.21
1402 2727 0.931005 CCGGTTGCTAATCGAAGCTC 59.069 55.000 10.30 4.08 43.19 4.09
1464 2789 6.182039 TGAAATCCTCGAGCAAAAACATAG 57.818 37.500 6.99 0.00 0.00 2.23
1495 2820 0.904865 ATCACGAGGAACCCTGCAGA 60.905 55.000 17.39 0.00 31.76 4.26
1505 2830 4.466370 ACTGGATTTAACAGATCACGAGGA 59.534 41.667 0.00 0.00 39.24 3.71
1525 2855 4.013267 ACATCCAGTCCAAAGAGAACTG 57.987 45.455 0.00 0.00 40.05 3.16
1528 2858 4.389374 GTCAACATCCAGTCCAAAGAGAA 58.611 43.478 0.00 0.00 0.00 2.87
1565 3048 5.183904 GGCAGACTAACTTCAACAATCCAAT 59.816 40.000 0.00 0.00 0.00 3.16
1625 3116 3.826157 TCAGAACAAAAAGGTGGGCATAG 59.174 43.478 0.00 0.00 0.00 2.23
1745 3237 3.448301 CCTGCACCAATTGGACAACATAT 59.552 43.478 31.22 2.48 38.94 1.78
1753 3245 0.831288 CAACCCCTGCACCAATTGGA 60.831 55.000 31.22 7.88 38.94 3.53
2096 3588 8.727100 ATCAAGGTTATATACACTCCATGAGA 57.273 34.615 0.00 0.00 31.25 3.27
2947 4614 5.836898 TGGTACGTGGATATCTAACTTCCAT 59.163 40.000 0.00 0.00 41.37 3.41
2992 4659 6.659242 AGAGTTGAAATGAAACCCATACGATT 59.341 34.615 0.00 0.00 34.45 3.34
3003 4670 5.938125 GTGGTAGGCTAGAGTTGAAATGAAA 59.062 40.000 0.00 0.00 0.00 2.69
3004 4671 5.012664 TGTGGTAGGCTAGAGTTGAAATGAA 59.987 40.000 0.00 0.00 0.00 2.57
3005 4672 4.530553 TGTGGTAGGCTAGAGTTGAAATGA 59.469 41.667 0.00 0.00 0.00 2.57
3006 4673 4.832248 TGTGGTAGGCTAGAGTTGAAATG 58.168 43.478 0.00 0.00 0.00 2.32
3007 4674 5.221843 TGTTGTGGTAGGCTAGAGTTGAAAT 60.222 40.000 0.00 0.00 0.00 2.17
3046 4713 5.923733 AACATACAACAACAAGAAACCCA 57.076 34.783 0.00 0.00 0.00 4.51
3064 4731 2.025416 TGCATGGTAGGGCTGTAAACAT 60.025 45.455 0.00 0.00 0.00 2.71
3101 4768 2.106477 TGGTTCGAATGCATGCACTA 57.894 45.000 25.37 3.82 0.00 2.74
3395 5156 4.751767 AATTTGCAGGTTGGAGTTCAAA 57.248 36.364 0.00 0.00 37.08 2.69
3545 5307 3.690460 ACTCCAGGACAATTGGAACATC 58.310 45.455 10.83 0.00 43.79 3.06
3562 5324 5.850614 TGTACTCCACTTGAACTAAACTCC 58.149 41.667 0.00 0.00 0.00 3.85
3632 5396 5.980116 CGACAATTGTTGGAAATGGTTACAA 59.020 36.000 16.91 0.00 35.05 2.41
3686 5450 5.845985 TGATAATCAATACAAGCGCTAGC 57.154 39.130 12.05 4.06 45.58 3.42
3687 5451 8.715998 AGAAATGATAATCAATACAAGCGCTAG 58.284 33.333 12.05 0.00 0.00 3.42
3688 5452 8.607441 AGAAATGATAATCAATACAAGCGCTA 57.393 30.769 12.05 0.00 0.00 4.26
3689 5453 7.502120 AGAAATGATAATCAATACAAGCGCT 57.498 32.000 2.64 2.64 0.00 5.92
3690 5454 9.831737 ATAAGAAATGATAATCAATACAAGCGC 57.168 29.630 0.00 0.00 0.00 5.92
3880 5647 5.384063 TTTGTTGACAGCAAGAACTTTCA 57.616 34.783 4.85 0.00 37.05 2.69
3909 5676 9.753674 TTCCTAAAACATGATTAAATCCACTCT 57.246 29.630 0.00 0.00 0.00 3.24
4052 5823 3.307059 GCAGAAGGTGTAACAGATCCACT 60.307 47.826 0.00 0.00 39.98 4.00
4053 5824 3.003480 GCAGAAGGTGTAACAGATCCAC 58.997 50.000 0.00 0.00 39.98 4.02
4054 5825 2.906389 AGCAGAAGGTGTAACAGATCCA 59.094 45.455 0.00 0.00 39.98 3.41
4055 5826 3.618690 AGCAGAAGGTGTAACAGATCC 57.381 47.619 0.00 0.00 39.98 3.36
4056 5827 4.378874 GCAAAGCAGAAGGTGTAACAGATC 60.379 45.833 0.00 0.00 39.98 2.75
4057 5828 3.503748 GCAAAGCAGAAGGTGTAACAGAT 59.496 43.478 0.00 0.00 39.98 2.90
4058 5829 2.878406 GCAAAGCAGAAGGTGTAACAGA 59.122 45.455 0.00 0.00 39.98 3.41
4059 5830 2.618241 TGCAAAGCAGAAGGTGTAACAG 59.382 45.455 0.00 0.00 33.73 3.16
4060 5831 2.649190 TGCAAAGCAGAAGGTGTAACA 58.351 42.857 0.00 0.00 33.73 2.41
4061 5832 3.923017 ATGCAAAGCAGAAGGTGTAAC 57.077 42.857 0.00 0.00 43.65 2.50
4100 5892 0.933097 GTGTGAGTATCTGCATGCCG 59.067 55.000 16.68 9.39 34.92 5.69
4383 6176 9.780413 GAAAAGTTAAGAGTGGATGATGAAATC 57.220 33.333 0.00 0.00 45.83 2.17
4390 6183 6.706270 GTGTGAGAAAAGTTAAGAGTGGATGA 59.294 38.462 0.00 0.00 0.00 2.92
4602 6396 2.879026 TGCAATTGTAACACCTGCGTAA 59.121 40.909 7.40 0.00 35.76 3.18
4642 6436 4.181578 GTGCATGTGTTGTACCCTAGTAG 58.818 47.826 0.00 0.00 35.13 2.57
4715 6509 5.045942 TGTGGAGTGGAAGATATGTAGCAAA 60.046 40.000 0.00 0.00 0.00 3.68
4733 6527 5.824624 AGTTGATATATTGGCAAGTGTGGAG 59.175 40.000 5.96 0.00 0.00 3.86
4734 6528 5.754782 AGTTGATATATTGGCAAGTGTGGA 58.245 37.500 5.96 0.00 0.00 4.02
4754 6548 8.624776 GCTAAGCAAGAATGGTCATAAATAGTT 58.375 33.333 0.00 0.00 35.91 2.24
4764 6558 4.637534 TGAATGAGCTAAGCAAGAATGGTC 59.362 41.667 0.00 0.00 35.91 4.02
4765 6559 4.592942 TGAATGAGCTAAGCAAGAATGGT 58.407 39.130 0.00 0.00 39.43 3.55
4766 6560 5.067413 ACATGAATGAGCTAAGCAAGAATGG 59.933 40.000 0.00 0.00 0.00 3.16
4767 6561 6.132791 ACATGAATGAGCTAAGCAAGAATG 57.867 37.500 0.00 0.00 0.00 2.67
4795 6593 9.533253 GCAGCAAATATGTTGTTTATATTTCCT 57.467 29.630 0.00 0.00 38.17 3.36
4826 6624 3.119884 CGCTCACATAAAAGCCATTGTCA 60.120 43.478 0.00 0.00 35.00 3.58
4913 6713 2.036346 ACTCACATTTTCCAAGCCAAGC 59.964 45.455 0.00 0.00 0.00 4.01
5166 6967 6.279513 TCTCCAATGCAAAATAAATTCGGT 57.720 33.333 0.00 0.00 0.00 4.69
5256 7057 6.088016 ACAACACAAGTGCATGTATCAAAT 57.912 33.333 9.60 0.00 33.84 2.32
5257 7058 5.512753 ACAACACAAGTGCATGTATCAAA 57.487 34.783 9.60 0.00 33.84 2.69
5462 7263 5.518848 AAATGCATGAACAAGACAGAACA 57.481 34.783 0.00 0.00 0.00 3.18
5597 7398 3.225940 TGCAACATATTCAACACACCCA 58.774 40.909 0.00 0.00 0.00 4.51
5661 7463 4.900635 AAAGCTGGTCTTAACAACACTG 57.099 40.909 0.00 0.00 33.88 3.66
5694 7496 4.450080 CCTTCATTTTCTGCCAAAGCTTTC 59.550 41.667 9.23 0.00 40.80 2.62
5784 7586 2.114616 ACTGTGATCCCCTAGAGCAAG 58.885 52.381 0.00 0.00 43.93 4.01
5792 7594 2.450476 GATGCAAAACTGTGATCCCCT 58.550 47.619 0.00 0.00 0.00 4.79
5818 7629 9.814899 ACAAACATTGTCAAACTCAAAATATGA 57.185 25.926 0.00 0.00 40.56 2.15
6002 7814 2.134789 AAACTGCTAGGCAATGGAGG 57.865 50.000 0.00 0.00 38.41 4.30
6050 7862 3.057033 CAGCAAGCTTAAGTTCCTGCAAT 60.057 43.478 15.59 0.00 0.00 3.56
6104 7917 1.497991 CCGCTTTGAAGAGTTCGTCA 58.502 50.000 0.00 0.00 32.73 4.35
6146 7959 6.759497 ATTTTTCTAAGCGGCTGAATAGTT 57.241 33.333 1.81 0.00 0.00 2.24
6753 8580 8.714179 CAAAATCAAGTCCACGTGTTATAACTA 58.286 33.333 15.65 0.91 0.00 2.24
6852 8930 7.406031 TGTACTAAGACAGAGGGAGTATTTG 57.594 40.000 0.00 0.00 0.00 2.32
6858 8936 5.986501 ACTTTGTACTAAGACAGAGGGAG 57.013 43.478 21.48 0.00 36.19 4.30
6859 8937 5.601313 ACAACTTTGTACTAAGACAGAGGGA 59.399 40.000 21.48 0.00 40.16 4.20
6860 8938 5.855045 ACAACTTTGTACTAAGACAGAGGG 58.145 41.667 21.48 6.84 40.16 4.30
6873 8951 7.437267 GTCTCAAGCTTAGTGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
6874 8952 6.258068 GTCTCAAGCTTAGTGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
6875 8953 6.257849 TGTCTCAAGCTTAGTGTACAACTTTG 59.742 38.462 0.00 0.04 40.56 2.77
6876 8954 6.346096 TGTCTCAAGCTTAGTGTACAACTTT 58.654 36.000 0.00 0.00 40.56 2.66
6877 8955 5.914033 TGTCTCAAGCTTAGTGTACAACTT 58.086 37.500 0.00 0.00 40.56 2.66
6878 8956 5.531122 TGTCTCAAGCTTAGTGTACAACT 57.469 39.130 0.00 0.00 43.40 3.16
6879 8957 6.787085 ATTGTCTCAAGCTTAGTGTACAAC 57.213 37.500 0.00 0.00 31.04 3.32
6880 8958 9.502091 AATAATTGTCTCAAGCTTAGTGTACAA 57.498 29.630 0.00 6.57 32.02 2.41
6881 8959 9.502091 AAATAATTGTCTCAAGCTTAGTGTACA 57.498 29.630 0.00 0.00 0.00 2.90
6885 8963 9.994432 CCTAAAATAATTGTCTCAAGCTTAGTG 57.006 33.333 0.00 0.00 0.00 2.74
6886 8964 9.959721 TCCTAAAATAATTGTCTCAAGCTTAGT 57.040 29.630 0.00 0.00 0.00 2.24
6888 8966 8.879759 CGTCCTAAAATAATTGTCTCAAGCTTA 58.120 33.333 0.00 0.00 0.00 3.09
6889 8967 7.606456 TCGTCCTAAAATAATTGTCTCAAGCTT 59.394 33.333 0.00 0.00 0.00 3.74
6890 8968 7.103641 TCGTCCTAAAATAATTGTCTCAAGCT 58.896 34.615 0.00 0.00 0.00 3.74
6891 8969 7.303634 TCGTCCTAAAATAATTGTCTCAAGC 57.696 36.000 0.00 0.00 0.00 4.01
6892 8970 8.391106 CCTTCGTCCTAAAATAATTGTCTCAAG 58.609 37.037 0.00 0.00 0.00 3.02
6893 8971 7.335924 CCCTTCGTCCTAAAATAATTGTCTCAA 59.664 37.037 0.00 0.00 0.00 3.02
6894 8972 6.821665 CCCTTCGTCCTAAAATAATTGTCTCA 59.178 38.462 0.00 0.00 0.00 3.27
6895 8973 7.046033 TCCCTTCGTCCTAAAATAATTGTCTC 58.954 38.462 0.00 0.00 0.00 3.36
6896 8974 6.954232 TCCCTTCGTCCTAAAATAATTGTCT 58.046 36.000 0.00 0.00 0.00 3.41
6897 8975 6.822170 ACTCCCTTCGTCCTAAAATAATTGTC 59.178 38.462 0.00 0.00 0.00 3.18
6898 8976 6.718294 ACTCCCTTCGTCCTAAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
6899 8977 8.904099 ATACTCCCTTCGTCCTAAAATAATTG 57.096 34.615 0.00 0.00 0.00 2.32
6909 8987 9.771140 AAGATAAATATATACTCCCTTCGTCCT 57.229 33.333 0.00 0.00 0.00 3.85
6982 9060 9.884636 AAAAGCCTCTTTTGTGTTTTTATAACT 57.115 25.926 3.99 0.00 0.00 2.24
7019 9097 7.709149 AAAGAAACTTCTATTGAGGAATGGG 57.291 36.000 0.00 0.00 36.28 4.00
7063 9383 9.344772 TGCCTCGCTTTATTTTTATCCTATAAA 57.655 29.630 0.00 0.00 0.00 1.40
7072 9392 5.065704 TGCATTGCCTCGCTTTATTTTTA 57.934 34.783 6.12 0.00 0.00 1.52
7124 9444 4.155709 TGAGCTGAAGAATAGATCGGGAT 58.844 43.478 0.00 0.00 33.46 3.85
7128 9448 3.316283 GGCTGAGCTGAAGAATAGATCG 58.684 50.000 3.72 0.00 33.46 3.69
7158 9478 6.867293 ACTGAGGTCGACTATGTTAAAGAAAC 59.133 38.462 16.46 0.00 38.67 2.78
7165 9485 4.840271 TGAGACTGAGGTCGACTATGTTA 58.160 43.478 16.46 0.00 46.29 2.41
7175 9495 3.305398 ACGACATTTGAGACTGAGGTC 57.695 47.619 0.00 0.00 42.41 3.85
7242 9562 7.920160 AATCTTTTGCCTTGTTTCAGAAAAA 57.080 28.000 0.00 0.00 0.00 1.94
7243 9563 7.626028 GCAAATCTTTTGCCTTGTTTCAGAAAA 60.626 33.333 12.74 0.00 39.38 2.29
7244 9564 6.183360 GCAAATCTTTTGCCTTGTTTCAGAAA 60.183 34.615 12.74 0.00 39.38 2.52
7245 9565 5.294060 GCAAATCTTTTGCCTTGTTTCAGAA 59.706 36.000 12.74 0.00 39.38 3.02
7246 9566 4.810491 GCAAATCTTTTGCCTTGTTTCAGA 59.190 37.500 12.74 0.00 39.38 3.27
7247 9567 5.086888 GCAAATCTTTTGCCTTGTTTCAG 57.913 39.130 12.74 0.00 39.38 3.02
7257 9577 9.628746 AATCAATAAAAATGGCAAATCTTTTGC 57.371 25.926 14.88 14.88 44.22 3.68
7266 9586 9.874205 CTTCTTCCTAATCAATAAAAATGGCAA 57.126 29.630 0.00 0.00 0.00 4.52
7267 9587 9.253832 TCTTCTTCCTAATCAATAAAAATGGCA 57.746 29.630 0.00 0.00 0.00 4.92
7268 9588 9.741647 CTCTTCTTCCTAATCAATAAAAATGGC 57.258 33.333 0.00 0.00 0.00 4.40
7276 9596 9.877178 GAACAACTCTCTTCTTCCTAATCAATA 57.123 33.333 0.00 0.00 0.00 1.90
7277 9597 7.547370 CGAACAACTCTCTTCTTCCTAATCAAT 59.453 37.037 0.00 0.00 0.00 2.57
7278 9598 6.868864 CGAACAACTCTCTTCTTCCTAATCAA 59.131 38.462 0.00 0.00 0.00 2.57
7279 9599 6.390721 CGAACAACTCTCTTCTTCCTAATCA 58.609 40.000 0.00 0.00 0.00 2.57
7280 9600 5.808030 CCGAACAACTCTCTTCTTCCTAATC 59.192 44.000 0.00 0.00 0.00 1.75
7281 9601 5.246429 ACCGAACAACTCTCTTCTTCCTAAT 59.754 40.000 0.00 0.00 0.00 1.73
7282 9602 4.587684 ACCGAACAACTCTCTTCTTCCTAA 59.412 41.667 0.00 0.00 0.00 2.69
7283 9603 4.150359 ACCGAACAACTCTCTTCTTCCTA 58.850 43.478 0.00 0.00 0.00 2.94
7284 9604 2.966516 ACCGAACAACTCTCTTCTTCCT 59.033 45.455 0.00 0.00 0.00 3.36
7285 9605 3.388345 ACCGAACAACTCTCTTCTTCC 57.612 47.619 0.00 0.00 0.00 3.46
7286 9606 7.422878 AATTAACCGAACAACTCTCTTCTTC 57.577 36.000 0.00 0.00 0.00 2.87
7287 9607 8.365647 TCTAATTAACCGAACAACTCTCTTCTT 58.634 33.333 0.00 0.00 0.00 2.52
7288 9608 7.893658 TCTAATTAACCGAACAACTCTCTTCT 58.106 34.615 0.00 0.00 0.00 2.85
7289 9609 7.275999 CCTCTAATTAACCGAACAACTCTCTTC 59.724 40.741 0.00 0.00 0.00 2.87
7290 9610 7.039223 TCCTCTAATTAACCGAACAACTCTCTT 60.039 37.037 0.00 0.00 0.00 2.85
7291 9611 6.436532 TCCTCTAATTAACCGAACAACTCTCT 59.563 38.462 0.00 0.00 0.00 3.10
7292 9612 6.628185 TCCTCTAATTAACCGAACAACTCTC 58.372 40.000 0.00 0.00 0.00 3.20
7293 9613 6.600882 TCCTCTAATTAACCGAACAACTCT 57.399 37.500 0.00 0.00 0.00 3.24
7294 9614 7.662604 TTTCCTCTAATTAACCGAACAACTC 57.337 36.000 0.00 0.00 0.00 3.01
7295 9615 7.040892 GGTTTTCCTCTAATTAACCGAACAACT 60.041 37.037 0.00 0.00 36.94 3.16
7296 9616 7.080099 GGTTTTCCTCTAATTAACCGAACAAC 58.920 38.462 0.00 0.00 36.94 3.32
7297 9617 7.205737 GGTTTTCCTCTAATTAACCGAACAA 57.794 36.000 0.00 0.00 36.94 2.83
7298 9618 6.806388 GGTTTTCCTCTAATTAACCGAACA 57.194 37.500 0.00 0.00 36.94 3.18
7303 9623 4.330894 CGTCCGGTTTTCCTCTAATTAACC 59.669 45.833 0.00 0.00 37.95 2.85
7304 9624 5.170748 TCGTCCGGTTTTCCTCTAATTAAC 58.829 41.667 0.00 0.00 37.95 2.01
7305 9625 5.404466 TCGTCCGGTTTTCCTCTAATTAA 57.596 39.130 0.00 0.00 37.95 1.40
7306 9626 5.404466 TTCGTCCGGTTTTCCTCTAATTA 57.596 39.130 0.00 0.00 37.95 1.40
7307 9627 3.967332 TCGTCCGGTTTTCCTCTAATT 57.033 42.857 0.00 0.00 37.95 1.40
7308 9628 3.967332 TTCGTCCGGTTTTCCTCTAAT 57.033 42.857 0.00 0.00 37.95 1.73
7309 9629 3.749665 TTTCGTCCGGTTTTCCTCTAA 57.250 42.857 0.00 0.00 37.95 2.10
7310 9630 3.392882 GTTTTCGTCCGGTTTTCCTCTA 58.607 45.455 0.00 0.00 37.95 2.43
7311 9631 2.216046 GTTTTCGTCCGGTTTTCCTCT 58.784 47.619 0.00 0.00 37.95 3.69
7312 9632 1.265095 GGTTTTCGTCCGGTTTTCCTC 59.735 52.381 0.00 0.00 37.95 3.71
7313 9633 1.134007 AGGTTTTCGTCCGGTTTTCCT 60.134 47.619 0.00 0.00 37.95 3.36
7314 9634 1.311859 AGGTTTTCGTCCGGTTTTCC 58.688 50.000 0.00 0.00 0.00 3.13
7315 9635 4.550577 TTTAGGTTTTCGTCCGGTTTTC 57.449 40.909 0.00 0.00 0.00 2.29
7316 9636 5.518848 AATTTAGGTTTTCGTCCGGTTTT 57.481 34.783 0.00 0.00 0.00 2.43
7317 9637 5.530543 TGTAATTTAGGTTTTCGTCCGGTTT 59.469 36.000 0.00 0.00 0.00 3.27
7318 9638 5.062528 TGTAATTTAGGTTTTCGTCCGGTT 58.937 37.500 0.00 0.00 0.00 4.44
7319 9639 4.640364 TGTAATTTAGGTTTTCGTCCGGT 58.360 39.130 0.00 0.00 0.00 5.28
7320 9640 5.610235 TTGTAATTTAGGTTTTCGTCCGG 57.390 39.130 0.00 0.00 0.00 5.14
7321 9641 5.852755 GGTTTGTAATTTAGGTTTTCGTCCG 59.147 40.000 0.00 0.00 0.00 4.79
7322 9642 6.973843 AGGTTTGTAATTTAGGTTTTCGTCC 58.026 36.000 0.00 0.00 0.00 4.79
7323 9643 9.385902 GTAAGGTTTGTAATTTAGGTTTTCGTC 57.614 33.333 0.00 0.00 0.00 4.20
7324 9644 8.901793 TGTAAGGTTTGTAATTTAGGTTTTCGT 58.098 29.630 0.00 0.00 0.00 3.85
7325 9645 9.733219 TTGTAAGGTTTGTAATTTAGGTTTTCG 57.267 29.630 0.00 0.00 0.00 3.46
7345 9665 0.591170 CCGTGTGTGCCCTTTGTAAG 59.409 55.000 0.00 0.00 0.00 2.34
7346 9666 0.180642 TCCGTGTGTGCCCTTTGTAA 59.819 50.000 0.00 0.00 0.00 2.41
7347 9667 0.533308 GTCCGTGTGTGCCCTTTGTA 60.533 55.000 0.00 0.00 0.00 2.41
7348 9668 1.822186 GTCCGTGTGTGCCCTTTGT 60.822 57.895 0.00 0.00 0.00 2.83
7349 9669 2.892334 CGTCCGTGTGTGCCCTTTG 61.892 63.158 0.00 0.00 0.00 2.77
7350 9670 2.590575 CGTCCGTGTGTGCCCTTT 60.591 61.111 0.00 0.00 0.00 3.11
7351 9671 3.542676 TCGTCCGTGTGTGCCCTT 61.543 61.111 0.00 0.00 0.00 3.95
7352 9672 4.295119 GTCGTCCGTGTGTGCCCT 62.295 66.667 0.00 0.00 0.00 5.19
7354 9674 4.295119 AGGTCGTCCGTGTGTGCC 62.295 66.667 0.00 0.00 39.05 5.01
7355 9675 3.036084 CAGGTCGTCCGTGTGTGC 61.036 66.667 0.00 0.00 39.05 4.57
7356 9676 2.355837 CCAGGTCGTCCGTGTGTG 60.356 66.667 0.00 0.00 39.05 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.