Multiple sequence alignment - TraesCS1D01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G107300 chr1D 100.000 6787 0 0 1 6787 100320074 100313288 0.000000e+00 12534.0
1 TraesCS1D01G107300 chr1D 91.005 378 11 3 6410 6787 100233822 100233468 7.910000e-134 488.0
2 TraesCS1D01G107300 chr1D 92.500 80 3 3 306 382 100319687 100319608 2.000000e-20 111.0
3 TraesCS1D01G107300 chr1D 92.500 80 3 3 388 467 100319769 100319693 2.000000e-20 111.0
4 TraesCS1D01G107300 chr1D 90.909 66 6 0 6136 6201 85193699 85193764 9.380000e-14 89.8
5 TraesCS1D01G107300 chr1B 92.633 3095 140 42 774 3817 151466619 151463562 0.000000e+00 4372.0
6 TraesCS1D01G107300 chr1B 89.791 1959 125 41 4395 6286 151462705 151460755 0.000000e+00 2440.0
7 TraesCS1D01G107300 chr1B 95.329 578 13 4 3820 4396 151463348 151462784 0.000000e+00 905.0
8 TraesCS1D01G107300 chr1B 90.726 496 20 13 6299 6787 151453674 151453198 7.420000e-179 638.0
9 TraesCS1D01G107300 chr1B 95.482 332 11 2 6454 6784 151742781 151743109 1.680000e-145 527.0
10 TraesCS1D01G107300 chr1B 96.066 305 12 0 6480 6784 151836866 151837170 1.310000e-136 497.0
11 TraesCS1D01G107300 chr1B 81.518 303 32 17 6116 6398 151835194 151835492 1.900000e-55 228.0
12 TraesCS1D01G107300 chr1A 90.268 2353 133 39 383 2685 95854106 95851800 0.000000e+00 2988.0
13 TraesCS1D01G107300 chr1A 92.129 2109 107 27 3820 5908 95850226 95848157 0.000000e+00 2920.0
14 TraesCS1D01G107300 chr1A 96.730 1162 36 2 2640 3799 95851800 95850639 0.000000e+00 1934.0
15 TraesCS1D01G107300 chr1A 91.833 502 25 8 6295 6787 95833958 95833464 0.000000e+00 686.0
16 TraesCS1D01G107300 chr1A 93.436 259 15 2 1 259 533757599 533757855 3.840000e-102 383.0
17 TraesCS1D01G107300 chr1A 84.138 290 36 4 6496 6784 135677470 135677750 8.670000e-69 272.0
18 TraesCS1D01G107300 chr6D 96.139 259 10 0 1 259 452135433 452135691 2.260000e-114 424.0
19 TraesCS1D01G107300 chr2D 94.595 259 14 0 1 259 61779290 61779548 1.060000e-107 401.0
20 TraesCS1D01G107300 chr2D 80.608 263 35 13 1 257 53127793 53128045 8.990000e-44 189.0
21 TraesCS1D01G107300 chr7D 90.234 256 24 1 1 256 104686243 104686497 3.920000e-87 333.0
22 TraesCS1D01G107300 chr6A 85.650 223 31 1 37 259 260438473 260438252 4.090000e-57 233.0
23 TraesCS1D01G107300 chr5B 85.377 212 21 7 56 259 520049118 520048909 1.920000e-50 211.0
24 TraesCS1D01G107300 chr3B 83.962 212 28 4 54 259 156372289 156372500 1.490000e-46 198.0
25 TraesCS1D01G107300 chr3B 88.043 92 9 1 6139 6228 640671906 640671997 2.590000e-19 108.0
26 TraesCS1D01G107300 chr2B 84.259 216 21 9 47 254 733093200 733093410 1.490000e-46 198.0
27 TraesCS1D01G107300 chr7A 84.483 116 15 2 6116 6228 579808489 579808374 2.000000e-20 111.0
28 TraesCS1D01G107300 chr3D 84.034 119 14 4 6116 6229 152555483 152555601 7.200000e-20 110.0
29 TraesCS1D01G107300 chr5A 83.761 117 15 2 6116 6228 556687498 556687382 2.590000e-19 108.0
30 TraesCS1D01G107300 chr5A 87.234 94 11 1 6136 6228 339743093 339743000 9.310000e-19 106.0
31 TraesCS1D01G107300 chr4A 84.615 91 11 2 6116 6203 476341559 476341649 3.370000e-13 87.9
32 TraesCS1D01G107300 chr4B 82.979 94 14 2 6138 6229 22464672 22464765 4.360000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G107300 chr1D 100313288 100320074 6786 True 4252.000000 12534 95.000000 1 6787 3 chr1D.!!$R2 6786
1 TraesCS1D01G107300 chr1B 151460755 151466619 5864 True 2572.333333 4372 92.584333 774 6286 3 chr1B.!!$R2 5512
2 TraesCS1D01G107300 chr1B 151835194 151837170 1976 False 362.500000 497 88.792000 6116 6784 2 chr1B.!!$F2 668
3 TraesCS1D01G107300 chr1A 95848157 95854106 5949 True 2614.000000 2988 93.042333 383 5908 3 chr1A.!!$R2 5525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.036010 ATGAGACCTCGCCAAAGTGG 60.036 55.000 0.00 0.00 41.55 4.00 F
714 717 0.042731 TGGAGTGGGGTAGGAGGAAG 59.957 60.000 0.00 0.00 0.00 3.46 F
1368 1407 0.256464 TTCTCCCCCTCTCTCGTCTC 59.744 60.000 0.00 0.00 0.00 3.36 F
2313 2391 0.455815 CCGGAAACAATTGGGCTAGC 59.544 55.000 6.04 6.04 0.00 3.42 F
2764 2889 1.588082 CAGTCCATGTTGCCCTTGC 59.412 57.895 0.00 0.00 38.26 4.01 F
3196 3321 1.904287 TGCATCCCCAGTTGTTACAC 58.096 50.000 0.00 0.00 0.00 2.90 F
3734 3862 0.249531 TTGCACTGCACATTGCCTTG 60.250 50.000 2.26 0.00 44.23 3.61 F
4024 4546 0.391793 GGTGAGCACCCAACTAGAGC 60.392 60.000 8.48 0.00 45.68 4.09 F
5337 5976 0.729116 CACATTGGTCCACGATGAGC 59.271 55.000 10.05 0.00 42.63 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 1529 1.081708 GGCTAAAAACACCGTGCCG 60.082 57.895 0.00 0.0 0.00 5.69 R
1833 1911 2.279741 TCTGGCATAATCAAGACGCAC 58.720 47.619 0.00 0.0 0.00 5.34 R
3295 3420 2.170187 AGCATTTGTCACCAAAAAGGCA 59.830 40.909 7.41 0.0 43.43 4.75 R
3605 3732 0.740737 AGCATTGCGCCAGTAAATCC 59.259 50.000 4.18 0.0 44.04 3.01 R
3616 3743 3.044986 GTTGGCATACATAAGCATTGCG 58.955 45.455 2.38 0.0 34.17 4.85 R
5109 5743 0.608856 AATGCCACTGCCAACGATCA 60.609 50.000 0.00 0.0 36.33 2.92 R
5472 6122 0.250901 GGGGTTGAGCTTGAGCAGAA 60.251 55.000 5.70 0.0 45.16 3.02 R
5593 6243 0.394216 CCCGATTGCAGTGGATTCCA 60.394 55.000 0.00 0.0 0.00 3.53 R
6438 7142 0.105913 TGGAACTTGGAAACCCCCAC 60.106 55.000 0.00 0.0 35.62 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.925861 GCCAGGATCCAGCCGCTC 62.926 72.222 15.82 0.00 0.00 5.03
20 21 4.247380 CCAGGATCCAGCCGCTCC 62.247 72.222 15.82 0.00 0.00 4.70
21 22 4.247380 CAGGATCCAGCCGCTCCC 62.247 72.222 15.82 0.00 0.00 4.30
44 45 3.408851 GAACGTCGTCCCCGCAAC 61.409 66.667 0.00 0.00 0.00 4.17
45 46 4.974989 AACGTCGTCCCCGCAACC 62.975 66.667 0.00 0.00 0.00 3.77
79 80 3.508840 CCGCCGGGAAGATGCAAC 61.509 66.667 2.18 0.00 34.06 4.17
80 81 3.508840 CGCCGGGAAGATGCAACC 61.509 66.667 2.18 0.00 0.00 3.77
81 82 3.508840 GCCGGGAAGATGCAACCG 61.509 66.667 2.18 0.00 45.57 4.44
82 83 3.508840 CCGGGAAGATGCAACCGC 61.509 66.667 10.41 0.00 44.70 5.68
83 84 3.508840 CGGGAAGATGCAACCGCC 61.509 66.667 0.00 0.00 39.85 6.13
84 85 3.508840 GGGAAGATGCAACCGCCG 61.509 66.667 0.00 0.00 37.32 6.46
85 86 4.179579 GGAAGATGCAACCGCCGC 62.180 66.667 0.00 0.00 37.32 6.53
86 87 4.520846 GAAGATGCAACCGCCGCG 62.521 66.667 5.59 5.59 37.32 6.46
107 108 2.583593 GCTACGCTGCGGAAGAGG 60.584 66.667 26.95 6.95 0.00 3.69
108 109 3.064987 GCTACGCTGCGGAAGAGGA 62.065 63.158 26.95 1.38 0.00 3.71
109 110 1.064946 CTACGCTGCGGAAGAGGAG 59.935 63.158 26.95 0.05 29.38 3.69
110 111 1.377366 CTACGCTGCGGAAGAGGAGA 61.377 60.000 26.95 0.00 38.92 3.71
111 112 0.963856 TACGCTGCGGAAGAGGAGAA 60.964 55.000 26.95 0.00 0.00 2.87
112 113 1.079819 CGCTGCGGAAGAGGAGAAA 60.080 57.895 15.40 0.00 0.00 2.52
113 114 0.670546 CGCTGCGGAAGAGGAGAAAA 60.671 55.000 15.40 0.00 0.00 2.29
114 115 0.799393 GCTGCGGAAGAGGAGAAAAC 59.201 55.000 0.00 0.00 0.00 2.43
115 116 1.878102 GCTGCGGAAGAGGAGAAAACA 60.878 52.381 0.00 0.00 0.00 2.83
116 117 2.704572 CTGCGGAAGAGGAGAAAACAT 58.295 47.619 0.00 0.00 0.00 2.71
117 118 2.675348 CTGCGGAAGAGGAGAAAACATC 59.325 50.000 0.00 0.00 0.00 3.06
118 119 2.010497 GCGGAAGAGGAGAAAACATCC 58.990 52.381 0.00 0.00 37.07 3.51
119 120 2.633488 CGGAAGAGGAGAAAACATCCC 58.367 52.381 0.00 0.00 37.57 3.85
120 121 2.633488 GGAAGAGGAGAAAACATCCCG 58.367 52.381 0.00 0.00 37.57 5.14
121 122 2.010497 GAAGAGGAGAAAACATCCCGC 58.990 52.381 0.00 0.00 37.57 6.13
122 123 0.253327 AGAGGAGAAAACATCCCGCC 59.747 55.000 0.00 0.00 37.57 6.13
123 124 1.078426 AGGAGAAAACATCCCGCCG 60.078 57.895 0.00 0.00 37.57 6.46
124 125 2.761195 GGAGAAAACATCCCGCCGC 61.761 63.158 0.00 0.00 0.00 6.53
125 126 2.750237 AGAAAACATCCCGCCGCC 60.750 61.111 0.00 0.00 0.00 6.13
126 127 3.059386 GAAAACATCCCGCCGCCA 61.059 61.111 0.00 0.00 0.00 5.69
127 128 3.336715 GAAAACATCCCGCCGCCAC 62.337 63.158 0.00 0.00 0.00 5.01
187 188 4.147449 CGGCGGTGATGCAGAGGA 62.147 66.667 0.00 0.00 36.28 3.71
188 189 2.202987 GGCGGTGATGCAGAGGAG 60.203 66.667 0.00 0.00 36.28 3.69
189 190 2.581354 GCGGTGATGCAGAGGAGT 59.419 61.111 0.00 0.00 34.15 3.85
190 191 1.812922 GCGGTGATGCAGAGGAGTG 60.813 63.158 0.00 0.00 34.15 3.51
191 192 1.153489 CGGTGATGCAGAGGAGTGG 60.153 63.158 0.00 0.00 0.00 4.00
192 193 1.222936 GGTGATGCAGAGGAGTGGG 59.777 63.158 0.00 0.00 0.00 4.61
193 194 1.222936 GTGATGCAGAGGAGTGGGG 59.777 63.158 0.00 0.00 0.00 4.96
194 195 1.997311 TGATGCAGAGGAGTGGGGG 60.997 63.158 0.00 0.00 0.00 5.40
208 209 3.827752 GGGGGAGGAGAGCTTTGT 58.172 61.111 0.00 0.00 0.00 2.83
209 210 1.301293 GGGGGAGGAGAGCTTTGTG 59.699 63.158 0.00 0.00 0.00 3.33
210 211 1.301293 GGGGAGGAGAGCTTTGTGG 59.699 63.158 0.00 0.00 0.00 4.17
211 212 1.377856 GGGAGGAGAGCTTTGTGGC 60.378 63.158 0.00 0.00 0.00 5.01
212 213 1.743252 GGAGGAGAGCTTTGTGGCG 60.743 63.158 0.00 0.00 37.29 5.69
213 214 1.743252 GAGGAGAGCTTTGTGGCGG 60.743 63.158 0.00 0.00 37.29 6.13
214 215 3.435186 GGAGAGCTTTGTGGCGGC 61.435 66.667 0.00 0.00 37.29 6.53
215 216 3.793144 GAGAGCTTTGTGGCGGCG 61.793 66.667 0.51 0.51 37.29 6.46
233 234 4.832608 GCGCTAGGTTCCCCCGTG 62.833 72.222 0.00 0.00 38.74 4.94
234 235 3.387947 CGCTAGGTTCCCCCGTGT 61.388 66.667 0.00 0.00 38.74 4.49
235 236 2.582978 GCTAGGTTCCCCCGTGTC 59.417 66.667 0.00 0.00 38.74 3.67
236 237 2.890371 CTAGGTTCCCCCGTGTCG 59.110 66.667 0.00 0.00 38.74 4.35
237 238 3.366739 CTAGGTTCCCCCGTGTCGC 62.367 68.421 0.00 0.00 38.74 5.19
245 246 3.751246 CCCGTGTCGCCCGAGTTA 61.751 66.667 0.00 0.00 0.00 2.24
246 247 2.202570 CCGTGTCGCCCGAGTTAG 60.203 66.667 0.00 0.00 0.00 2.34
247 248 2.202570 CGTGTCGCCCGAGTTAGG 60.203 66.667 0.00 0.00 0.00 2.69
248 249 2.968206 GTGTCGCCCGAGTTAGGT 59.032 61.111 0.00 0.00 0.00 3.08
249 250 1.445582 GTGTCGCCCGAGTTAGGTG 60.446 63.158 0.00 0.00 36.16 4.00
250 251 1.604308 TGTCGCCCGAGTTAGGTGA 60.604 57.895 0.00 0.00 41.57 4.02
251 252 3.281240 TCGCCCGAGTTAGGTGAC 58.719 61.111 0.00 0.00 38.97 3.67
252 253 2.202570 CGCCCGAGTTAGGTGACG 60.203 66.667 0.00 0.00 37.02 4.35
253 254 2.508663 GCCCGAGTTAGGTGACGC 60.509 66.667 0.00 0.00 0.00 5.19
254 255 2.202570 CCCGAGTTAGGTGACGCG 60.203 66.667 3.53 3.53 41.52 6.01
256 257 2.202570 CGAGTTAGGTGACGCGGG 60.203 66.667 12.47 0.00 38.83 6.13
257 258 2.183555 GAGTTAGGTGACGCGGGG 59.816 66.667 12.47 0.00 0.00 5.73
258 259 3.366739 GAGTTAGGTGACGCGGGGG 62.367 68.421 12.47 0.00 0.00 5.40
269 270 3.508840 GCGGGGGCGTTGAGATTG 61.509 66.667 0.00 0.00 0.00 2.67
270 271 2.267642 CGGGGGCGTTGAGATTGA 59.732 61.111 0.00 0.00 0.00 2.57
271 272 1.815421 CGGGGGCGTTGAGATTGAG 60.815 63.158 0.00 0.00 0.00 3.02
272 273 1.602237 GGGGGCGTTGAGATTGAGA 59.398 57.895 0.00 0.00 0.00 3.27
273 274 0.744771 GGGGGCGTTGAGATTGAGAC 60.745 60.000 0.00 0.00 0.00 3.36
274 275 1.084370 GGGGCGTTGAGATTGAGACG 61.084 60.000 0.00 0.00 38.45 4.18
277 278 1.991430 CGTTGAGATTGAGACGCGG 59.009 57.895 12.47 0.00 0.00 6.46
278 279 1.413767 CGTTGAGATTGAGACGCGGG 61.414 60.000 12.47 0.00 0.00 6.13
279 280 1.447838 TTGAGATTGAGACGCGGGC 60.448 57.895 12.47 1.16 0.00 6.13
280 281 2.956964 GAGATTGAGACGCGGGCG 60.957 66.667 12.47 12.04 46.03 6.13
291 292 3.192922 GCGGGCGCGAGTATTTGT 61.193 61.111 28.66 0.00 0.00 2.83
292 293 2.746803 GCGGGCGCGAGTATTTGTT 61.747 57.895 28.66 0.00 0.00 2.83
293 294 1.791662 CGGGCGCGAGTATTTGTTT 59.208 52.632 19.65 0.00 0.00 2.83
294 295 1.000884 CGGGCGCGAGTATTTGTTTA 58.999 50.000 19.65 0.00 0.00 2.01
295 296 1.005347 CGGGCGCGAGTATTTGTTTAG 60.005 52.381 19.65 0.00 0.00 1.85
296 297 2.004733 GGGCGCGAGTATTTGTTTAGT 58.995 47.619 12.10 0.00 0.00 2.24
297 298 2.417586 GGGCGCGAGTATTTGTTTAGTT 59.582 45.455 12.10 0.00 0.00 2.24
298 299 3.618150 GGGCGCGAGTATTTGTTTAGTTA 59.382 43.478 12.10 0.00 0.00 2.24
299 300 4.271776 GGGCGCGAGTATTTGTTTAGTTAT 59.728 41.667 12.10 0.00 0.00 1.89
300 301 5.220719 GGGCGCGAGTATTTGTTTAGTTATT 60.221 40.000 12.10 0.00 0.00 1.40
301 302 5.900242 GGCGCGAGTATTTGTTTAGTTATTC 59.100 40.000 12.10 0.00 0.00 1.75
302 303 6.238022 GGCGCGAGTATTTGTTTAGTTATTCT 60.238 38.462 12.10 0.00 0.00 2.40
303 304 7.043192 GGCGCGAGTATTTGTTTAGTTATTCTA 60.043 37.037 12.10 0.00 0.00 2.10
304 305 7.997104 GCGCGAGTATTTGTTTAGTTATTCTAG 59.003 37.037 12.10 0.00 0.00 2.43
305 306 9.229784 CGCGAGTATTTGTTTAGTTATTCTAGA 57.770 33.333 0.00 0.00 0.00 2.43
326 327 9.112725 TCTAGATTCATACAACAATGACATTGG 57.887 33.333 27.46 15.61 44.42 3.16
327 328 6.567050 AGATTCATACAACAATGACATTGGC 58.433 36.000 27.46 7.55 44.42 4.52
328 329 5.718724 TTCATACAACAATGACATTGGCA 57.281 34.783 27.46 12.63 44.42 4.92
329 330 5.918426 TCATACAACAATGACATTGGCAT 57.082 34.783 27.46 16.15 44.42 4.40
330 331 5.652518 TCATACAACAATGACATTGGCATG 58.347 37.500 27.46 23.42 44.42 4.06
331 332 3.322211 ACAACAATGACATTGGCATGG 57.678 42.857 27.46 5.40 44.42 3.66
332 333 2.004017 CAACAATGACATTGGCATGGC 58.996 47.619 27.46 13.29 44.42 4.40
344 345 2.574006 GGCATGGCCTATGAATGAGA 57.426 50.000 8.35 0.00 46.69 3.27
345 346 2.157738 GGCATGGCCTATGAATGAGAC 58.842 52.381 8.35 0.00 46.69 3.36
346 347 2.157738 GCATGGCCTATGAATGAGACC 58.842 52.381 16.46 0.00 39.21 3.85
347 348 2.224719 GCATGGCCTATGAATGAGACCT 60.225 50.000 16.46 0.00 39.21 3.85
348 349 3.672808 CATGGCCTATGAATGAGACCTC 58.327 50.000 3.32 0.00 39.21 3.85
349 350 1.688735 TGGCCTATGAATGAGACCTCG 59.311 52.381 3.32 0.00 0.00 4.63
350 351 1.606737 GGCCTATGAATGAGACCTCGC 60.607 57.143 0.00 0.00 0.00 5.03
351 352 1.606737 GCCTATGAATGAGACCTCGCC 60.607 57.143 0.00 0.00 0.00 5.54
352 353 1.688735 CCTATGAATGAGACCTCGCCA 59.311 52.381 0.00 0.00 0.00 5.69
353 354 2.103094 CCTATGAATGAGACCTCGCCAA 59.897 50.000 0.00 0.00 0.00 4.52
354 355 2.787473 ATGAATGAGACCTCGCCAAA 57.213 45.000 0.00 0.00 0.00 3.28
355 356 2.099141 TGAATGAGACCTCGCCAAAG 57.901 50.000 0.00 0.00 0.00 2.77
356 357 1.347707 TGAATGAGACCTCGCCAAAGT 59.652 47.619 0.00 0.00 0.00 2.66
357 358 1.734465 GAATGAGACCTCGCCAAAGTG 59.266 52.381 0.00 0.00 0.00 3.16
358 359 0.036010 ATGAGACCTCGCCAAAGTGG 60.036 55.000 0.00 0.00 41.55 4.00
359 360 1.371558 GAGACCTCGCCAAAGTGGT 59.628 57.895 0.00 0.00 40.46 4.16
360 361 0.250338 GAGACCTCGCCAAAGTGGTT 60.250 55.000 0.00 0.00 40.46 3.67
361 362 0.535102 AGACCTCGCCAAAGTGGTTG 60.535 55.000 0.00 0.00 40.46 3.77
362 363 0.818040 GACCTCGCCAAAGTGGTTGT 60.818 55.000 0.00 0.00 40.46 3.32
363 364 1.101049 ACCTCGCCAAAGTGGTTGTG 61.101 55.000 0.00 0.00 40.46 3.33
364 365 1.654220 CTCGCCAAAGTGGTTGTGG 59.346 57.895 0.00 0.00 40.46 4.17
365 366 1.077357 TCGCCAAAGTGGTTGTGGT 60.077 52.632 0.00 0.00 40.46 4.16
366 367 0.180642 TCGCCAAAGTGGTTGTGGTA 59.819 50.000 0.00 0.00 40.46 3.25
367 368 1.025812 CGCCAAAGTGGTTGTGGTAA 58.974 50.000 0.00 0.00 40.46 2.85
368 369 1.268845 CGCCAAAGTGGTTGTGGTAAC 60.269 52.381 0.00 0.00 40.46 2.50
369 370 1.067974 GCCAAAGTGGTTGTGGTAACC 59.932 52.381 1.95 1.95 40.46 2.85
376 377 3.510531 TGGTTGTGGTAACCATGCTAA 57.489 42.857 7.39 0.00 44.74 3.09
377 378 3.833732 TGGTTGTGGTAACCATGCTAAA 58.166 40.909 7.39 0.00 44.74 1.85
378 379 3.570550 TGGTTGTGGTAACCATGCTAAAC 59.429 43.478 7.39 1.15 44.74 2.01
379 380 3.570550 GGTTGTGGTAACCATGCTAAACA 59.429 43.478 0.00 0.00 40.03 2.83
380 381 4.038162 GGTTGTGGTAACCATGCTAAACAA 59.962 41.667 0.00 0.00 40.03 2.83
381 382 5.452077 GGTTGTGGTAACCATGCTAAACAAA 60.452 40.000 0.00 0.00 40.03 2.83
385 386 4.180817 GGTAACCATGCTAAACAAATGCC 58.819 43.478 0.00 0.00 0.00 4.40
393 394 6.539464 CCATGCTAAACAAATGCCAATTACAT 59.461 34.615 0.00 0.00 0.00 2.29
398 399 7.117523 GCTAAACAAATGCCAATTACATGACAA 59.882 33.333 0.00 0.00 0.00 3.18
404 405 6.971527 ATGCCAATTACATGACAAACAATG 57.028 33.333 0.00 0.00 0.00 2.82
408 409 6.128849 GCCAATTACATGACAAACAATGACAC 60.129 38.462 0.00 0.00 36.55 3.67
414 415 2.957680 TGACAAACAATGACACTGGCAT 59.042 40.909 0.00 0.00 0.00 4.40
415 416 3.243468 TGACAAACAATGACACTGGCATG 60.243 43.478 0.00 0.00 0.00 4.06
416 417 2.063266 CAAACAATGACACTGGCATGC 58.937 47.619 9.90 9.90 0.00 4.06
421 422 0.848735 ATGACACTGGCATGCCCTAT 59.151 50.000 33.44 16.55 34.56 2.57
426 427 2.442878 ACACTGGCATGCCCTATGAATA 59.557 45.455 33.44 11.64 39.21 1.75
443 444 2.403252 ATAAGACCTCGCCAAAGTGG 57.597 50.000 0.00 0.00 41.55 4.00
479 481 3.427528 GCTAAACAAACGACGACATGAGA 59.572 43.478 0.00 0.00 0.00 3.27
525 528 1.062148 TGAGACTTCGTCGATGTAGCG 59.938 52.381 13.17 0.00 37.67 4.26
532 535 1.658673 GTCGATGTAGCGGGTAGGG 59.341 63.158 0.00 0.00 0.00 3.53
538 541 2.179377 TGTAGCGGGTAGGGGTTAAT 57.821 50.000 0.00 0.00 0.00 1.40
552 555 2.438392 GGGTTAATGCTAGTAGGCCACT 59.562 50.000 5.01 9.38 41.62 4.00
565 568 2.282462 CCACTGGTGGCAGGGAAC 60.282 66.667 6.84 0.00 44.73 3.62
570 573 2.671963 GGTGGCAGGGAACGAACC 60.672 66.667 0.00 0.00 0.00 3.62
579 582 0.616964 GGGAACGAACCCTAGACCCT 60.617 60.000 12.83 0.00 45.90 4.34
582 585 2.108970 GAACGAACCCTAGACCCTGAT 58.891 52.381 0.00 0.00 0.00 2.90
583 586 1.486211 ACGAACCCTAGACCCTGATG 58.514 55.000 0.00 0.00 0.00 3.07
604 607 4.864334 GGGGGATGAGCACTGCGG 62.864 72.222 0.00 0.00 0.00 5.69
606 609 4.783621 GGGATGAGCACTGCGGCA 62.784 66.667 1.29 1.29 35.83 5.69
607 610 3.503363 GGATGAGCACTGCGGCAC 61.503 66.667 0.00 0.00 35.83 5.01
619 622 0.249031 TGCGGCACTATGATCGACAG 60.249 55.000 0.00 0.00 0.00 3.51
642 645 1.748591 GCAGGGGCTTGATCAAGGTAG 60.749 57.143 31.41 12.16 38.80 3.18
648 651 2.271800 GCTTGATCAAGGTAGACGGTG 58.728 52.381 31.41 8.36 38.80 4.94
657 660 1.160329 GGTAGACGGTGATGCCATGC 61.160 60.000 0.00 0.00 36.97 4.06
662 665 2.246739 CGGTGATGCCATGCGGTAG 61.247 63.158 0.00 0.00 36.97 3.18
663 666 2.546494 GGTGATGCCATGCGGTAGC 61.546 63.158 0.00 0.00 39.71 3.58
693 696 1.235281 GCGGACAAAGAAGACCACCC 61.235 60.000 0.00 0.00 0.00 4.61
696 699 1.226746 GACAAAGAAGACCACCCGTG 58.773 55.000 0.00 0.00 0.00 4.94
714 717 0.042731 TGGAGTGGGGTAGGAGGAAG 59.957 60.000 0.00 0.00 0.00 3.46
755 758 5.399497 CCAGATCCATAGGACCAGGAAAATT 60.399 44.000 0.00 0.00 32.98 1.82
762 765 6.211384 CCATAGGACCAGGAAAATTGACTTTT 59.789 38.462 0.00 0.00 39.78 2.27
763 766 7.256296 CCATAGGACCAGGAAAATTGACTTTTT 60.256 37.037 0.00 0.00 37.18 1.94
764 767 5.917462 AGGACCAGGAAAATTGACTTTTTG 58.083 37.500 0.00 0.00 37.18 2.44
765 768 5.660864 AGGACCAGGAAAATTGACTTTTTGA 59.339 36.000 0.00 0.00 37.18 2.69
766 769 6.327365 AGGACCAGGAAAATTGACTTTTTGAT 59.673 34.615 0.00 0.00 37.18 2.57
767 770 6.992123 GGACCAGGAAAATTGACTTTTTGATT 59.008 34.615 0.00 0.00 37.18 2.57
768 771 8.147704 GGACCAGGAAAATTGACTTTTTGATTA 58.852 33.333 0.00 0.00 37.18 1.75
769 772 9.710900 GACCAGGAAAATTGACTTTTTGATTAT 57.289 29.630 0.00 0.00 37.18 1.28
899 903 2.034053 TCGCATTTTGTTCCACTTCCAC 59.966 45.455 0.00 0.00 0.00 4.02
946 958 1.296755 TTCTCCGTCTCGTCACCTCG 61.297 60.000 0.00 0.00 0.00 4.63
1070 1091 2.044352 CCCCAAAACCCTAGGCCG 60.044 66.667 2.05 0.00 0.00 6.13
1140 1179 3.830192 CGCGGTAACCCTAGCCGT 61.830 66.667 0.00 0.00 46.41 5.68
1141 1180 2.480610 CGCGGTAACCCTAGCCGTA 61.481 63.158 0.00 0.00 46.41 4.02
1283 1322 4.467084 GGCATCGGCAAGGACGGA 62.467 66.667 0.00 0.00 43.71 4.69
1352 1391 2.271800 CGCACGCCTTCTTCTTATTCT 58.728 47.619 0.00 0.00 0.00 2.40
1354 1393 2.609916 GCACGCCTTCTTCTTATTCTCC 59.390 50.000 0.00 0.00 0.00 3.71
1356 1395 2.170817 ACGCCTTCTTCTTATTCTCCCC 59.829 50.000 0.00 0.00 0.00 4.81
1360 1399 4.302930 CCTTCTTCTTATTCTCCCCCTCT 58.697 47.826 0.00 0.00 0.00 3.69
1364 1403 3.231207 TCTTATTCTCCCCCTCTCTCG 57.769 52.381 0.00 0.00 0.00 4.04
1367 1406 0.930726 ATTCTCCCCCTCTCTCGTCT 59.069 55.000 0.00 0.00 0.00 4.18
1368 1407 0.256464 TTCTCCCCCTCTCTCGTCTC 59.744 60.000 0.00 0.00 0.00 3.36
1369 1408 1.152839 CTCCCCCTCTCTCGTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
1370 1409 2.123640 CCCCCTCTCTCGTCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
1371 1410 2.517402 CCCCTCTCTCGTCTCCCG 60.517 72.222 0.00 0.00 38.13 5.14
1372 1411 2.590645 CCCTCTCTCGTCTCCCGA 59.409 66.667 0.00 0.00 45.00 5.14
1373 1412 1.149627 CCCTCTCTCGTCTCCCGAT 59.850 63.158 0.00 0.00 46.23 4.18
1374 1413 0.887387 CCCTCTCTCGTCTCCCGATC 60.887 65.000 0.00 0.00 46.23 3.69
1375 1414 0.887387 CCTCTCTCGTCTCCCGATCC 60.887 65.000 0.00 0.00 46.23 3.36
1376 1415 1.225376 CTCTCTCGTCTCCCGATCCG 61.225 65.000 0.00 0.00 46.23 4.18
1379 1418 4.501285 TCGTCTCCCGATCCGGCT 62.501 66.667 0.00 0.00 46.86 5.52
1398 1450 2.104331 CCCGACGCTATTGCTCGT 59.896 61.111 15.29 1.04 42.09 4.18
1419 1471 4.337060 GTGGTGGCCGTTTTCCGC 62.337 66.667 0.00 0.00 34.38 5.54
1475 1529 1.390463 GTTCGATCTGTTCCTCGTTGC 59.610 52.381 0.00 0.00 36.33 4.17
1494 1548 2.337361 GGCACGGTGTTTTTAGCCT 58.663 52.632 10.24 0.00 39.02 4.58
1495 1549 0.671796 GGCACGGTGTTTTTAGCCTT 59.328 50.000 10.24 0.00 39.02 4.35
1496 1550 1.067974 GGCACGGTGTTTTTAGCCTTT 59.932 47.619 10.24 0.00 39.02 3.11
1497 1551 2.482316 GGCACGGTGTTTTTAGCCTTTT 60.482 45.455 10.24 0.00 39.02 2.27
1498 1552 3.243468 GGCACGGTGTTTTTAGCCTTTTA 60.243 43.478 10.24 0.00 39.02 1.52
1499 1553 4.552355 GCACGGTGTTTTTAGCCTTTTAT 58.448 39.130 10.24 0.00 0.00 1.40
1500 1554 4.986034 GCACGGTGTTTTTAGCCTTTTATT 59.014 37.500 10.24 0.00 0.00 1.40
1504 1558 7.274686 CACGGTGTTTTTAGCCTTTTATTATGG 59.725 37.037 0.00 0.00 0.00 2.74
1550 1620 1.907255 ACCTGGTAGGCCTGTAACTTC 59.093 52.381 17.99 0.00 39.63 3.01
1580 1657 7.095607 GCTAGTATAATTGAACAATCTCACCCG 60.096 40.741 0.45 0.00 0.00 5.28
1587 1664 2.951229 ACAATCTCACCCGAAAAGGT 57.049 45.000 0.00 0.00 42.40 3.50
1609 1686 7.042335 AGGTGAACCTTAATAGATTTCAGTCG 58.958 38.462 0.00 0.00 46.09 4.18
1621 1698 5.482908 AGATTTCAGTCGACACAATAGCTT 58.517 37.500 19.50 0.00 0.00 3.74
1643 1720 7.068716 AGCTTCTGTTAGTTTTGATTTGGAGTT 59.931 33.333 0.00 0.00 0.00 3.01
1658 1735 8.717821 TGATTTGGAGTTTAATAGTCGTTTCTG 58.282 33.333 0.00 0.00 0.00 3.02
1659 1736 8.842358 ATTTGGAGTTTAATAGTCGTTTCTGA 57.158 30.769 0.00 0.00 0.00 3.27
1682 1759 8.421249 TGAAGGGAGTTTTGTTATTCATGAAT 57.579 30.769 23.75 23.75 34.93 2.57
1683 1760 8.869109 TGAAGGGAGTTTTGTTATTCATGAATT 58.131 29.630 25.26 10.37 32.50 2.17
1714 1791 5.421693 AGTGCCAAAATGCATGTTTATAGGA 59.578 36.000 0.00 0.00 44.30 2.94
1737 1814 3.788227 AAATGCAGGGTGTCTTCAGTA 57.212 42.857 0.00 0.00 0.00 2.74
1792 1870 7.346471 ACATATAAGTCATGCTAAACCCAACT 58.654 34.615 0.00 0.00 0.00 3.16
1833 1911 6.234177 ACCTTGAGAAATACTTTGGTGAGAG 58.766 40.000 0.00 0.00 0.00 3.20
1863 1941 4.661222 TGATTATGCCAGAAAGTGAACCA 58.339 39.130 0.00 0.00 0.00 3.67
1875 1953 3.526931 AGTGAACCATGTATCCGAGTG 57.473 47.619 0.00 0.00 0.00 3.51
1890 1968 3.554670 CGAGTGTTTCGCTACTTATGC 57.445 47.619 0.00 0.00 43.22 3.14
1894 1972 5.532025 AGTGTTTCGCTACTTATGCTTTC 57.468 39.130 0.00 0.00 0.00 2.62
1938 2016 7.148086 GCACCATCTGTTGTTTCCATTTATAGA 60.148 37.037 0.00 0.00 0.00 1.98
2313 2391 0.455815 CCGGAAACAATTGGGCTAGC 59.544 55.000 6.04 6.04 0.00 3.42
2433 2513 4.987408 TGTGTCATCCATAAGCCAATTG 57.013 40.909 0.00 0.00 0.00 2.32
2479 2559 7.988028 ACCAGTAGACCTTTTAGATTAATGCTC 59.012 37.037 0.00 0.00 0.00 4.26
2566 2646 2.368221 AGCAGATGGAAGTGATAGCCTC 59.632 50.000 0.00 0.00 0.00 4.70
2717 2842 9.190317 AGAGTGTCTATCATGTTGTTCACTATA 57.810 33.333 12.51 0.00 35.50 1.31
2718 2843 9.239002 GAGTGTCTATCATGTTGTTCACTATAC 57.761 37.037 12.51 0.00 35.50 1.47
2764 2889 1.588082 CAGTCCATGTTGCCCTTGC 59.412 57.895 0.00 0.00 38.26 4.01
3160 3285 4.224370 ACAGGTTATACTCCATTGACCGTT 59.776 41.667 0.00 0.00 32.55 4.44
3180 3305 6.247124 CGTTGAACGACAGGTAACTTTGCA 62.247 45.833 13.13 0.00 46.67 4.08
3196 3321 1.904287 TGCATCCCCAGTTGTTACAC 58.096 50.000 0.00 0.00 0.00 2.90
3208 3333 7.416890 CCCCAGTTGTTACACTTTGAATTTACA 60.417 37.037 0.00 0.00 0.00 2.41
3238 3363 9.649167 TCTGTACTTATTAACTTTCTAGTTGGC 57.351 33.333 0.00 0.00 44.22 4.52
3295 3420 7.702348 GTCAGACTTGCTACATTTTTGTTTTCT 59.298 33.333 0.00 0.00 0.00 2.52
3330 3456 5.244402 TGACAAATGCTTGACCTGATTTGAT 59.756 36.000 0.00 0.00 37.80 2.57
3332 3458 5.929992 ACAAATGCTTGACCTGATTTGATTG 59.070 36.000 0.00 0.00 37.80 2.67
3407 3533 4.014406 TGAGACGACTTCTGCAGGTAATA 58.986 43.478 15.13 0.00 33.22 0.98
3605 3732 4.816385 ACACAGGTACAGTTCTGTCAAATG 59.184 41.667 8.80 7.14 41.71 2.32
3616 3743 5.183904 AGTTCTGTCAAATGGATTTACTGGC 59.816 40.000 0.00 0.00 0.00 4.85
3734 3862 0.249531 TTGCACTGCACATTGCCTTG 60.250 50.000 2.26 0.00 44.23 3.61
3763 3891 0.773644 AGCAAACCCTGTCTGTCCAT 59.226 50.000 0.00 0.00 0.00 3.41
3783 3913 7.337689 TGTCCATTTCAATATCAGAAGTTCCTG 59.662 37.037 0.00 0.00 35.55 3.86
3804 4115 5.106555 CCTGAAAAACATGTAGCACTGTAGG 60.107 44.000 0.00 0.00 0.00 3.18
3817 4128 5.503927 AGCACTGTAGGTTTTCATCATGAT 58.496 37.500 1.18 1.18 0.00 2.45
3821 4132 7.596494 CACTGTAGGTTTTCATCATGATGTTT 58.404 34.615 30.01 15.15 39.72 2.83
3823 4134 9.466497 ACTGTAGGTTTTCATCATGATGTTTAT 57.534 29.630 30.01 16.90 39.72 1.40
3851 4373 6.595772 CAGTAGCAATTAACTGGAGCTTAG 57.404 41.667 0.00 0.00 39.55 2.18
3908 4430 4.274147 TCTTTGGTGCTTAACTTTGGTCA 58.726 39.130 0.00 0.00 0.00 4.02
3909 4431 4.892934 TCTTTGGTGCTTAACTTTGGTCAT 59.107 37.500 0.00 0.00 0.00 3.06
3910 4432 4.846779 TTGGTGCTTAACTTTGGTCATC 57.153 40.909 0.00 0.00 0.00 2.92
3911 4433 4.098914 TGGTGCTTAACTTTGGTCATCT 57.901 40.909 0.00 0.00 0.00 2.90
3912 4434 4.072131 TGGTGCTTAACTTTGGTCATCTC 58.928 43.478 0.00 0.00 0.00 2.75
3913 4435 4.072131 GGTGCTTAACTTTGGTCATCTCA 58.928 43.478 0.00 0.00 0.00 3.27
3914 4436 4.702131 GGTGCTTAACTTTGGTCATCTCAT 59.298 41.667 0.00 0.00 0.00 2.90
3915 4437 5.163713 GGTGCTTAACTTTGGTCATCTCATC 60.164 44.000 0.00 0.00 0.00 2.92
4024 4546 0.391793 GGTGAGCACCCAACTAGAGC 60.392 60.000 8.48 0.00 45.68 4.09
4038 4560 7.286775 ACCCAACTAGAGCAAATTTCAGTTTAA 59.713 33.333 0.00 0.00 0.00 1.52
4039 4561 8.141268 CCCAACTAGAGCAAATTTCAGTTTAAA 58.859 33.333 0.00 0.00 0.00 1.52
4189 4711 1.499007 ACATTTGGGAACAGAGGGTGT 59.501 47.619 0.00 0.00 44.54 4.16
4191 4713 3.333680 ACATTTGGGAACAGAGGGTGTAT 59.666 43.478 0.00 0.00 44.54 2.29
4372 4894 1.201877 CCGATGTTTGCGGTAAGAACG 60.202 52.381 0.00 0.00 43.66 3.95
4480 5084 5.948992 AATACTTTGCACCTGAAACTCTC 57.051 39.130 0.00 0.00 0.00 3.20
4511 5115 5.596836 TGTTCAAGATCAAAAGCCTGTTT 57.403 34.783 0.00 0.00 0.00 2.83
4608 5212 3.606687 CTCCAGTAACATAACCACCCAC 58.393 50.000 0.00 0.00 0.00 4.61
4639 5243 4.481280 TCTTAGGACATACCCTGGAGTACT 59.519 45.833 0.00 0.00 40.05 2.73
4653 5257 7.567622 ACCCTGGAGTACTACATATTATTGTGT 59.432 37.037 8.62 0.00 0.00 3.72
4721 5326 5.589452 GCAGGACAATGATCTCTCTGAATTT 59.411 40.000 0.00 0.00 0.00 1.82
4748 5353 7.841282 TGAATCTCGAGAAATTATAGAGGGT 57.159 36.000 20.91 0.00 0.00 4.34
4826 5431 5.997384 AGGTACTCTCGTACTCCATTTTT 57.003 39.130 0.00 0.00 44.30 1.94
4952 5557 8.106247 AGTTGTGTAAATACCAAGGTAATGTG 57.894 34.615 2.62 0.00 33.99 3.21
4954 5559 7.441890 TGTGTAAATACCAAGGTAATGTGTG 57.558 36.000 2.62 0.00 33.99 3.82
4984 5618 9.758021 TGATATATGGGCATATTGACTTGAATT 57.242 29.630 0.00 0.00 35.71 2.17
5015 5649 4.590850 AACCTTGCTGAAAAGTTGGATC 57.409 40.909 0.00 0.00 0.00 3.36
5106 5740 5.907945 CGTCGTCGTGTGAAAATAGATCTAT 59.092 40.000 9.57 9.57 0.00 1.98
5109 5743 7.644551 GTCGTCGTGTGAAAATAGATCTATTCT 59.355 37.037 24.75 14.14 34.90 2.40
5123 5757 3.785486 TCTATTCTGATCGTTGGCAGTG 58.215 45.455 0.00 0.00 33.90 3.66
5202 5839 7.066043 TCGTGTAAATAACAAAAGACACACCTT 59.934 33.333 0.00 0.00 40.63 3.50
5216 5854 5.992217 AGACACACCTTTTAAGTCATGACTC 59.008 40.000 28.01 11.25 41.58 3.36
5337 5976 0.729116 CACATTGGTCCACGATGAGC 59.271 55.000 10.05 0.00 42.63 4.26
5397 6046 5.113502 ACATTTGCTGCAGAAGTTTACTC 57.886 39.130 20.43 0.00 0.00 2.59
5593 6243 8.458843 GTTAGTTCAGTGTGCCATGTATATTTT 58.541 33.333 0.00 0.00 0.00 1.82
5608 6258 7.658525 TGTATATTTTGGAATCCACTGCAAT 57.341 32.000 0.00 1.13 30.78 3.56
5626 6276 3.487544 GCAATCGGGTCTTTATGCTGTTC 60.488 47.826 0.00 0.00 0.00 3.18
5691 6343 5.991861 TGTGTGAGGTTTACAGGTTTTCTA 58.008 37.500 0.00 0.00 0.00 2.10
5692 6344 6.416415 TGTGTGAGGTTTACAGGTTTTCTAA 58.584 36.000 0.00 0.00 0.00 2.10
5726 6384 4.209288 CGACCTTTCTTTACTGGCGATATG 59.791 45.833 0.00 0.00 0.00 1.78
5818 6484 4.494350 TTGCAGCTTCATTTCTTCTGAC 57.506 40.909 0.00 0.00 0.00 3.51
5841 6507 3.648545 AGTTTTCACTTGTCTCCTAGGCT 59.351 43.478 2.96 0.00 0.00 4.58
5886 6552 7.544566 TCTTTGATTCGTTTCCTGTCATACTAC 59.455 37.037 0.00 0.00 0.00 2.73
5887 6553 6.525578 TGATTCGTTTCCTGTCATACTACT 57.474 37.500 0.00 0.00 0.00 2.57
5908 6574 0.317160 TTGAGTGTACGCCACCTCTG 59.683 55.000 1.98 0.00 45.74 3.35
5918 6600 1.835927 GCCACCTCTGCCTCAGTCTT 61.836 60.000 0.00 0.00 32.61 3.01
5921 6603 2.303022 CCACCTCTGCCTCAGTCTTTTA 59.697 50.000 0.00 0.00 32.61 1.52
5936 6618 5.711976 CAGTCTTTTATTGAGGGTCCATTGT 59.288 40.000 0.00 0.00 0.00 2.71
5951 6633 4.622740 GTCCATTGTGATAGTTTTGCAAGC 59.377 41.667 0.00 0.00 0.00 4.01
5952 6634 4.280425 TCCATTGTGATAGTTTTGCAAGCA 59.720 37.500 0.00 0.00 0.00 3.91
5957 6639 4.148891 GTGATAGTTTTGCAAGCACGTAC 58.851 43.478 0.00 0.00 0.00 3.67
5958 6640 3.187637 TGATAGTTTTGCAAGCACGTACC 59.812 43.478 0.00 0.00 0.00 3.34
5962 6644 1.141645 TTTGCAAGCACGTACCGTAG 58.858 50.000 0.00 0.00 38.32 3.51
5963 6645 0.032403 TTGCAAGCACGTACCGTAGT 59.968 50.000 0.00 0.00 38.32 2.73
5966 6648 2.288091 TGCAAGCACGTACCGTAGTAAA 60.288 45.455 0.00 0.00 38.32 2.01
5967 6649 2.091122 GCAAGCACGTACCGTAGTAAAC 59.909 50.000 0.00 0.00 38.32 2.01
5968 6650 3.307674 CAAGCACGTACCGTAGTAAACA 58.692 45.455 0.00 0.00 38.32 2.83
5969 6651 3.855689 AGCACGTACCGTAGTAAACAT 57.144 42.857 0.00 0.00 38.32 2.71
5970 6652 3.504863 AGCACGTACCGTAGTAAACATG 58.495 45.455 0.00 0.00 38.32 3.21
5984 6666 6.763303 AGTAAACATGAAATTTTCAACGGC 57.237 33.333 15.34 5.19 43.95 5.68
6031 6713 7.312657 TGTGTCTGTACGTAAGATAAGGTAG 57.687 40.000 0.00 0.00 43.62 3.18
6032 6714 6.183360 TGTGTCTGTACGTAAGATAAGGTAGC 60.183 42.308 0.00 0.00 43.62 3.58
6033 6715 5.297776 TGTCTGTACGTAAGATAAGGTAGCC 59.702 44.000 0.00 0.00 43.62 3.93
6036 6718 3.978718 ACGTAAGATAAGGTAGCCGAC 57.021 47.619 0.00 0.00 43.62 4.79
6041 6723 4.388378 AAGATAAGGTAGCCGACACTTC 57.612 45.455 0.00 0.00 0.00 3.01
6049 6731 1.737008 GCCGACACTTCCTCCGTTC 60.737 63.158 0.00 0.00 0.00 3.95
6059 6741 4.569162 CACTTCCTCCGTTCGCAAATATAA 59.431 41.667 0.00 0.00 0.00 0.98
6064 6746 4.331717 CCTCCGTTCGCAAATATAAGTTGT 59.668 41.667 2.52 0.00 0.00 3.32
6131 6817 6.018180 CGTGCTCCCTTTTAATATGAACTACC 60.018 42.308 0.00 0.00 0.00 3.18
6286 6982 3.585862 TGAACTTCGATGGCTAGAACAC 58.414 45.455 3.12 0.00 0.00 3.32
6287 6983 3.006430 TGAACTTCGATGGCTAGAACACA 59.994 43.478 3.12 0.00 0.00 3.72
6288 6984 2.960819 ACTTCGATGGCTAGAACACAC 58.039 47.619 3.12 0.00 0.00 3.82
6289 6985 2.299013 ACTTCGATGGCTAGAACACACA 59.701 45.455 3.12 0.00 0.00 3.72
6293 6993 5.276461 TCGATGGCTAGAACACACATAAT 57.724 39.130 0.00 0.00 0.00 1.28
6306 7006 9.868277 AGAACACACATAATTCTCTCTCTTAAG 57.132 33.333 0.00 0.00 0.00 1.85
6316 7016 6.988109 TTCTCTCTCTTAAGAAAAACGTCG 57.012 37.500 6.63 0.00 0.00 5.12
6318 7018 6.141462 TCTCTCTCTTAAGAAAAACGTCGTC 58.859 40.000 6.63 0.00 0.00 4.20
6319 7019 5.824429 TCTCTCTTAAGAAAAACGTCGTCA 58.176 37.500 6.63 0.00 0.00 4.35
6320 7020 5.684626 TCTCTCTTAAGAAAAACGTCGTCAC 59.315 40.000 6.63 0.00 0.00 3.67
6321 7021 5.585390 TCTCTTAAGAAAAACGTCGTCACT 58.415 37.500 6.63 0.00 0.00 3.41
6322 7022 5.684626 TCTCTTAAGAAAAACGTCGTCACTC 59.315 40.000 6.63 0.00 0.00 3.51
6323 7023 4.438797 TCTTAAGAAAAACGTCGTCACTCG 59.561 41.667 1.68 0.00 41.41 4.18
6355 7055 2.923655 ACAGTTACAATGTGATCGAGCG 59.076 45.455 0.00 0.00 0.00 5.03
6356 7056 2.282555 CAGTTACAATGTGATCGAGCGG 59.717 50.000 0.00 0.00 0.00 5.52
6357 7057 2.094182 AGTTACAATGTGATCGAGCGGT 60.094 45.455 0.00 0.00 0.00 5.68
6358 7058 2.665649 TACAATGTGATCGAGCGGTT 57.334 45.000 0.00 0.00 0.00 4.44
6359 7059 1.078709 ACAATGTGATCGAGCGGTTG 58.921 50.000 9.85 9.85 0.00 3.77
6398 7102 7.596248 CACAAGAGTATTCCAATTTCCAACTTG 59.404 37.037 0.00 0.00 36.81 3.16
6399 7103 7.287696 ACAAGAGTATTCCAATTTCCAACTTGT 59.712 33.333 0.00 0.00 38.34 3.16
6400 7104 7.219484 AGAGTATTCCAATTTCCAACTTGTG 57.781 36.000 0.00 0.00 0.00 3.33
6401 7105 7.004086 AGAGTATTCCAATTTCCAACTTGTGA 58.996 34.615 0.00 0.00 0.00 3.58
6402 7106 6.981722 AGTATTCCAATTTCCAACTTGTGAC 58.018 36.000 0.00 0.00 0.00 3.67
6403 7107 4.664150 TTCCAATTTCCAACTTGTGACC 57.336 40.909 0.00 0.00 0.00 4.02
6404 7108 2.962421 TCCAATTTCCAACTTGTGACCC 59.038 45.455 0.00 0.00 0.00 4.46
6405 7109 2.965147 CCAATTTCCAACTTGTGACCCT 59.035 45.455 0.00 0.00 0.00 4.34
6406 7110 4.141135 TCCAATTTCCAACTTGTGACCCTA 60.141 41.667 0.00 0.00 0.00 3.53
6408 7112 5.245977 CCAATTTCCAACTTGTGACCCTAAT 59.754 40.000 0.00 0.00 0.00 1.73
6409 7113 6.435904 CCAATTTCCAACTTGTGACCCTAATA 59.564 38.462 0.00 0.00 0.00 0.98
6410 7114 7.039363 CCAATTTCCAACTTGTGACCCTAATAA 60.039 37.037 0.00 0.00 0.00 1.40
6411 7115 8.364142 CAATTTCCAACTTGTGACCCTAATAAA 58.636 33.333 0.00 0.00 0.00 1.40
6412 7116 7.899648 TTTCCAACTTGTGACCCTAATAAAA 57.100 32.000 0.00 0.00 0.00 1.52
6414 7118 6.843752 TCCAACTTGTGACCCTAATAAAAGA 58.156 36.000 0.00 0.00 0.00 2.52
6416 7120 7.780745 TCCAACTTGTGACCCTAATAAAAGAAA 59.219 33.333 0.00 0.00 0.00 2.52
6417 7121 8.417884 CCAACTTGTGACCCTAATAAAAGAAAA 58.582 33.333 0.00 0.00 0.00 2.29
6418 7122 9.981114 CAACTTGTGACCCTAATAAAAGAAAAT 57.019 29.630 0.00 0.00 0.00 1.82
6438 7142 8.943002 AGAAAATAGTATTCCAACTTTACACGG 58.057 33.333 0.00 0.00 0.00 4.94
6439 7143 8.625786 AAAATAGTATTCCAACTTTACACGGT 57.374 30.769 0.00 0.00 0.00 4.83
6440 7144 7.605410 AATAGTATTCCAACTTTACACGGTG 57.395 36.000 6.58 6.58 0.00 4.94
6441 7145 4.320870 AGTATTCCAACTTTACACGGTGG 58.679 43.478 13.48 0.00 0.00 4.61
6442 7146 1.970092 TTCCAACTTTACACGGTGGG 58.030 50.000 13.48 2.09 0.00 4.61
6443 7147 0.108963 TCCAACTTTACACGGTGGGG 59.891 55.000 13.48 2.14 0.00 4.96
6444 7148 0.891904 CCAACTTTACACGGTGGGGG 60.892 60.000 13.48 2.48 0.00 5.40
6445 7149 0.179012 CAACTTTACACGGTGGGGGT 60.179 55.000 13.48 3.09 0.00 4.95
6446 7150 0.552363 AACTTTACACGGTGGGGGTT 59.448 50.000 13.48 8.75 0.00 4.11
6447 7151 0.552363 ACTTTACACGGTGGGGGTTT 59.448 50.000 13.48 0.00 0.00 3.27
6448 7152 1.241165 CTTTACACGGTGGGGGTTTC 58.759 55.000 13.48 0.00 0.00 2.78
6449 7153 0.178995 TTTACACGGTGGGGGTTTCC 60.179 55.000 13.48 0.00 0.00 3.13
6450 7154 1.351080 TTACACGGTGGGGGTTTCCA 61.351 55.000 13.48 0.00 37.22 3.53
6451 7155 1.351080 TACACGGTGGGGGTTTCCAA 61.351 55.000 13.48 0.00 38.72 3.53
6452 7156 1.901464 CACGGTGGGGGTTTCCAAG 60.901 63.158 0.00 0.00 38.72 3.61
6468 7172 3.028130 TCCAAGTTCCAACCAAAAGACC 58.972 45.455 0.00 0.00 0.00 3.85
6489 8521 5.653507 ACCCGTAAAAAGGAAAGTTTGTTC 58.346 37.500 0.00 0.00 0.00 3.18
6516 8548 0.755079 TCAGGCATCAGAATCCGGAG 59.245 55.000 11.34 0.00 0.00 4.63
6535 8567 2.598632 CGCATCGGAAAGATCGGGC 61.599 63.158 0.00 0.00 37.52 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.925861 GAGCGGCTGGATCCTGGC 62.926 72.222 28.85 28.85 37.16 4.85
62 63 3.508840 GTTGCATCTTCCCGGCGG 61.509 66.667 21.46 21.46 0.00 6.13
63 64 3.508840 GGTTGCATCTTCCCGGCG 61.509 66.667 0.00 0.00 0.00 6.46
64 65 3.508840 CGGTTGCATCTTCCCGGC 61.509 66.667 0.00 0.00 36.84 6.13
65 66 3.508840 GCGGTTGCATCTTCCCGG 61.509 66.667 0.00 0.00 40.74 5.73
66 67 3.508840 GGCGGTTGCATCTTCCCG 61.509 66.667 0.00 0.00 45.35 5.14
67 68 3.508840 CGGCGGTTGCATCTTCCC 61.509 66.667 0.00 0.00 45.35 3.97
68 69 4.179579 GCGGCGGTTGCATCTTCC 62.180 66.667 9.78 0.00 45.35 3.46
69 70 4.520846 CGCGGCGGTTGCATCTTC 62.521 66.667 15.84 0.00 45.35 2.87
91 92 1.064946 CTCCTCTTCCGCAGCGTAG 59.935 63.158 15.05 10.81 0.00 3.51
92 93 0.963856 TTCTCCTCTTCCGCAGCGTA 60.964 55.000 15.05 0.00 0.00 4.42
93 94 1.816863 TTTCTCCTCTTCCGCAGCGT 61.817 55.000 15.05 0.00 0.00 5.07
94 95 0.670546 TTTTCTCCTCTTCCGCAGCG 60.671 55.000 8.18 8.18 0.00 5.18
95 96 0.799393 GTTTTCTCCTCTTCCGCAGC 59.201 55.000 0.00 0.00 0.00 5.25
96 97 2.169832 TGTTTTCTCCTCTTCCGCAG 57.830 50.000 0.00 0.00 0.00 5.18
97 98 2.615493 GGATGTTTTCTCCTCTTCCGCA 60.615 50.000 0.00 0.00 0.00 5.69
98 99 2.010497 GGATGTTTTCTCCTCTTCCGC 58.990 52.381 0.00 0.00 0.00 5.54
99 100 2.633488 GGGATGTTTTCTCCTCTTCCG 58.367 52.381 0.00 0.00 33.05 4.30
100 101 2.633488 CGGGATGTTTTCTCCTCTTCC 58.367 52.381 0.00 0.00 33.05 3.46
101 102 2.010497 GCGGGATGTTTTCTCCTCTTC 58.990 52.381 0.00 0.00 33.05 2.87
102 103 1.340114 GGCGGGATGTTTTCTCCTCTT 60.340 52.381 0.00 0.00 33.05 2.85
103 104 0.253327 GGCGGGATGTTTTCTCCTCT 59.747 55.000 0.00 0.00 33.05 3.69
104 105 1.090052 CGGCGGGATGTTTTCTCCTC 61.090 60.000 0.00 0.00 33.05 3.71
105 106 1.078426 CGGCGGGATGTTTTCTCCT 60.078 57.895 0.00 0.00 33.05 3.69
106 107 2.761195 GCGGCGGGATGTTTTCTCC 61.761 63.158 9.78 0.00 0.00 3.71
107 108 2.761195 GGCGGCGGGATGTTTTCTC 61.761 63.158 9.78 0.00 0.00 2.87
108 109 2.750237 GGCGGCGGGATGTTTTCT 60.750 61.111 9.78 0.00 0.00 2.52
109 110 3.059386 TGGCGGCGGGATGTTTTC 61.059 61.111 9.78 0.00 0.00 2.29
110 111 3.370231 GTGGCGGCGGGATGTTTT 61.370 61.111 9.78 0.00 0.00 2.43
170 171 4.147449 TCCTCTGCATCACCGCCG 62.147 66.667 0.00 0.00 0.00 6.46
171 172 2.202987 CTCCTCTGCATCACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
172 173 1.812922 CACTCCTCTGCATCACCGC 60.813 63.158 0.00 0.00 0.00 5.68
173 174 1.153489 CCACTCCTCTGCATCACCG 60.153 63.158 0.00 0.00 0.00 4.94
174 175 1.222936 CCCACTCCTCTGCATCACC 59.777 63.158 0.00 0.00 0.00 4.02
175 176 1.222936 CCCCACTCCTCTGCATCAC 59.777 63.158 0.00 0.00 0.00 3.06
176 177 1.997311 CCCCCACTCCTCTGCATCA 60.997 63.158 0.00 0.00 0.00 3.07
177 178 2.914289 CCCCCACTCCTCTGCATC 59.086 66.667 0.00 0.00 0.00 3.91
191 192 1.301293 CACAAAGCTCTCCTCCCCC 59.699 63.158 0.00 0.00 0.00 5.40
192 193 1.301293 CCACAAAGCTCTCCTCCCC 59.699 63.158 0.00 0.00 0.00 4.81
193 194 1.377856 GCCACAAAGCTCTCCTCCC 60.378 63.158 0.00 0.00 0.00 4.30
194 195 1.743252 CGCCACAAAGCTCTCCTCC 60.743 63.158 0.00 0.00 0.00 4.30
195 196 1.743252 CCGCCACAAAGCTCTCCTC 60.743 63.158 0.00 0.00 0.00 3.71
196 197 2.348998 CCGCCACAAAGCTCTCCT 59.651 61.111 0.00 0.00 0.00 3.69
197 198 3.435186 GCCGCCACAAAGCTCTCC 61.435 66.667 0.00 0.00 0.00 3.71
198 199 3.793144 CGCCGCCACAAAGCTCTC 61.793 66.667 0.00 0.00 0.00 3.20
228 229 3.695022 CTAACTCGGGCGACACGGG 62.695 68.421 0.00 0.00 37.94 5.28
229 230 2.202570 CTAACTCGGGCGACACGG 60.203 66.667 0.00 0.00 0.00 4.94
230 231 2.202570 CCTAACTCGGGCGACACG 60.203 66.667 0.00 0.00 0.00 4.49
231 232 1.445582 CACCTAACTCGGGCGACAC 60.446 63.158 0.00 0.00 0.00 3.67
232 233 1.604308 TCACCTAACTCGGGCGACA 60.604 57.895 0.00 0.00 0.00 4.35
233 234 1.153881 GTCACCTAACTCGGGCGAC 60.154 63.158 0.00 0.00 0.00 5.19
234 235 2.693762 CGTCACCTAACTCGGGCGA 61.694 63.158 0.00 0.00 0.00 5.54
235 236 2.202570 CGTCACCTAACTCGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
236 237 2.508663 GCGTCACCTAACTCGGGC 60.509 66.667 0.00 0.00 0.00 6.13
237 238 2.202570 CGCGTCACCTAACTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
238 239 2.202570 CCGCGTCACCTAACTCGG 60.203 66.667 4.92 0.00 40.68 4.63
239 240 2.202570 CCCGCGTCACCTAACTCG 60.203 66.667 4.92 0.00 0.00 4.18
240 241 2.183555 CCCCGCGTCACCTAACTC 59.816 66.667 4.92 0.00 0.00 3.01
241 242 3.387947 CCCCCGCGTCACCTAACT 61.388 66.667 4.92 0.00 0.00 2.24
252 253 3.508840 CAATCTCAACGCCCCCGC 61.509 66.667 0.00 0.00 38.22 6.13
253 254 1.815421 CTCAATCTCAACGCCCCCG 60.815 63.158 0.00 0.00 41.14 5.73
254 255 0.744771 GTCTCAATCTCAACGCCCCC 60.745 60.000 0.00 0.00 0.00 5.40
255 256 1.084370 CGTCTCAATCTCAACGCCCC 61.084 60.000 0.00 0.00 0.00 5.80
256 257 2.373938 CGTCTCAATCTCAACGCCC 58.626 57.895 0.00 0.00 0.00 6.13
259 260 1.413767 CCCGCGTCTCAATCTCAACG 61.414 60.000 4.92 0.00 38.13 4.10
260 261 1.696832 GCCCGCGTCTCAATCTCAAC 61.697 60.000 4.92 0.00 0.00 3.18
261 262 1.447838 GCCCGCGTCTCAATCTCAA 60.448 57.895 4.92 0.00 0.00 3.02
262 263 2.184322 GCCCGCGTCTCAATCTCA 59.816 61.111 4.92 0.00 0.00 3.27
263 264 2.956964 CGCCCGCGTCTCAATCTC 60.957 66.667 4.92 0.00 34.35 2.75
274 275 2.248274 AAACAAATACTCGCGCCCGC 62.248 55.000 0.00 1.98 37.85 6.13
275 276 1.000884 TAAACAAATACTCGCGCCCG 58.999 50.000 0.00 0.00 0.00 6.13
276 277 2.004733 ACTAAACAAATACTCGCGCCC 58.995 47.619 0.00 0.00 0.00 6.13
277 278 3.734776 AACTAAACAAATACTCGCGCC 57.265 42.857 0.00 0.00 0.00 6.53
278 279 6.702897 AGAATAACTAAACAAATACTCGCGC 58.297 36.000 0.00 0.00 0.00 6.86
279 280 9.229784 TCTAGAATAACTAAACAAATACTCGCG 57.770 33.333 0.00 0.00 0.00 5.87
300 301 9.112725 CCAATGTCATTGTTGTATGAATCTAGA 57.887 33.333 21.32 0.00 38.59 2.43
301 302 7.859377 GCCAATGTCATTGTTGTATGAATCTAG 59.141 37.037 21.32 4.98 38.59 2.43
302 303 7.338957 TGCCAATGTCATTGTTGTATGAATCTA 59.661 33.333 21.32 0.00 38.59 1.98
303 304 6.153170 TGCCAATGTCATTGTTGTATGAATCT 59.847 34.615 21.32 0.00 38.59 2.40
304 305 6.331845 TGCCAATGTCATTGTTGTATGAATC 58.668 36.000 21.32 2.01 38.59 2.52
305 306 6.283544 TGCCAATGTCATTGTTGTATGAAT 57.716 33.333 21.32 0.00 38.59 2.57
306 307 5.718724 TGCCAATGTCATTGTTGTATGAA 57.281 34.783 21.32 0.13 38.59 2.57
307 308 5.394333 CCATGCCAATGTCATTGTTGTATGA 60.394 40.000 22.57 5.31 38.59 2.15
308 309 4.806775 CCATGCCAATGTCATTGTTGTATG 59.193 41.667 21.32 19.32 38.59 2.39
309 310 4.681244 GCCATGCCAATGTCATTGTTGTAT 60.681 41.667 21.32 10.93 38.59 2.29
310 311 3.368220 GCCATGCCAATGTCATTGTTGTA 60.368 43.478 21.32 9.30 38.59 2.41
311 312 2.613474 GCCATGCCAATGTCATTGTTGT 60.613 45.455 21.32 6.44 38.59 3.32
312 313 2.004017 GCCATGCCAATGTCATTGTTG 58.996 47.619 21.32 15.53 38.59 3.33
313 314 2.389962 GCCATGCCAATGTCATTGTT 57.610 45.000 21.32 6.06 38.59 2.83
326 327 2.157738 GGTCTCATTCATAGGCCATGC 58.842 52.381 5.01 0.00 38.67 4.06
327 328 3.672808 GAGGTCTCATTCATAGGCCATG 58.327 50.000 5.01 7.20 41.44 3.66
328 329 2.301296 CGAGGTCTCATTCATAGGCCAT 59.699 50.000 5.01 0.00 41.44 4.40
329 330 1.688735 CGAGGTCTCATTCATAGGCCA 59.311 52.381 5.01 0.00 41.44 5.36
330 331 1.606737 GCGAGGTCTCATTCATAGGCC 60.607 57.143 0.00 0.00 39.13 5.19
331 332 1.606737 GGCGAGGTCTCATTCATAGGC 60.607 57.143 0.00 0.00 0.00 3.93
332 333 1.688735 TGGCGAGGTCTCATTCATAGG 59.311 52.381 0.00 0.00 0.00 2.57
333 334 3.459232 TTGGCGAGGTCTCATTCATAG 57.541 47.619 0.00 0.00 0.00 2.23
334 335 3.197766 ACTTTGGCGAGGTCTCATTCATA 59.802 43.478 0.00 0.00 0.00 2.15
335 336 2.026822 ACTTTGGCGAGGTCTCATTCAT 60.027 45.455 0.00 0.00 0.00 2.57
336 337 1.347707 ACTTTGGCGAGGTCTCATTCA 59.652 47.619 0.00 0.00 0.00 2.57
337 338 1.734465 CACTTTGGCGAGGTCTCATTC 59.266 52.381 0.00 0.00 0.00 2.67
338 339 1.611673 CCACTTTGGCGAGGTCTCATT 60.612 52.381 0.00 0.00 0.00 2.57
339 340 0.036010 CCACTTTGGCGAGGTCTCAT 60.036 55.000 0.00 0.00 0.00 2.90
340 341 1.371183 CCACTTTGGCGAGGTCTCA 59.629 57.895 0.00 0.00 0.00 3.27
341 342 0.250338 AACCACTTTGGCGAGGTCTC 60.250 55.000 0.00 0.00 42.67 3.36
342 343 0.535102 CAACCACTTTGGCGAGGTCT 60.535 55.000 0.00 0.00 42.67 3.85
343 344 0.818040 ACAACCACTTTGGCGAGGTC 60.818 55.000 0.00 0.00 42.67 3.85
344 345 1.101049 CACAACCACTTTGGCGAGGT 61.101 55.000 0.00 0.00 42.67 3.85
345 346 1.654220 CACAACCACTTTGGCGAGG 59.346 57.895 0.00 0.00 42.67 4.63
346 347 1.101049 ACCACAACCACTTTGGCGAG 61.101 55.000 0.00 0.00 42.67 5.03
347 348 0.180642 TACCACAACCACTTTGGCGA 59.819 50.000 0.00 0.00 42.67 5.54
348 349 1.025812 TTACCACAACCACTTTGGCG 58.974 50.000 0.00 0.00 42.67 5.69
349 350 1.067974 GGTTACCACAACCACTTTGGC 59.932 52.381 0.00 0.00 42.67 4.52
350 351 2.379972 TGGTTACCACAACCACTTTGG 58.620 47.619 0.00 0.00 44.74 3.28
357 358 3.570550 TGTTTAGCATGGTTACCACAACC 59.429 43.478 6.10 0.00 35.80 3.77
358 359 4.839668 TGTTTAGCATGGTTACCACAAC 57.160 40.909 6.10 5.84 35.80 3.32
359 360 5.854010 TTTGTTTAGCATGGTTACCACAA 57.146 34.783 6.10 1.42 35.80 3.33
360 361 5.777802 CATTTGTTTAGCATGGTTACCACA 58.222 37.500 6.10 0.00 35.80 4.17
361 362 4.625311 GCATTTGTTTAGCATGGTTACCAC 59.375 41.667 6.10 0.00 35.80 4.16
362 363 4.322349 GGCATTTGTTTAGCATGGTTACCA 60.322 41.667 6.53 6.53 38.19 3.25
363 364 4.180817 GGCATTTGTTTAGCATGGTTACC 58.819 43.478 1.12 0.00 0.00 2.85
364 365 4.815269 TGGCATTTGTTTAGCATGGTTAC 58.185 39.130 1.12 2.73 0.00 2.50
365 366 5.474578 TTGGCATTTGTTTAGCATGGTTA 57.525 34.783 1.12 0.00 0.00 2.85
366 367 4.348863 TTGGCATTTGTTTAGCATGGTT 57.651 36.364 1.12 0.00 0.00 3.67
367 368 4.556592 ATTGGCATTTGTTTAGCATGGT 57.443 36.364 1.62 1.62 0.00 3.55
368 369 5.873712 TGTAATTGGCATTTGTTTAGCATGG 59.126 36.000 4.94 0.00 0.00 3.66
369 370 6.964741 TGTAATTGGCATTTGTTTAGCATG 57.035 33.333 4.94 0.00 0.00 4.06
370 371 7.278424 GTCATGTAATTGGCATTTGTTTAGCAT 59.722 33.333 4.94 0.00 0.00 3.79
371 372 6.589523 GTCATGTAATTGGCATTTGTTTAGCA 59.410 34.615 4.94 0.00 0.00 3.49
372 373 6.589523 TGTCATGTAATTGGCATTTGTTTAGC 59.410 34.615 4.94 0.00 0.00 3.09
373 374 8.531622 TTGTCATGTAATTGGCATTTGTTTAG 57.468 30.769 4.94 0.00 29.98 1.85
374 375 8.768955 GTTTGTCATGTAATTGGCATTTGTTTA 58.231 29.630 4.94 0.00 29.98 2.01
375 376 7.281774 TGTTTGTCATGTAATTGGCATTTGTTT 59.718 29.630 4.94 0.00 29.98 2.83
376 377 6.765036 TGTTTGTCATGTAATTGGCATTTGTT 59.235 30.769 4.94 0.00 29.98 2.83
377 378 6.286758 TGTTTGTCATGTAATTGGCATTTGT 58.713 32.000 4.94 0.00 29.98 2.83
378 379 6.782298 TGTTTGTCATGTAATTGGCATTTG 57.218 33.333 4.94 0.00 29.98 2.32
379 380 7.660617 TCATTGTTTGTCATGTAATTGGCATTT 59.339 29.630 0.00 0.00 29.98 2.32
380 381 7.118101 GTCATTGTTTGTCATGTAATTGGCATT 59.882 33.333 0.00 0.00 29.98 3.56
381 382 6.591062 GTCATTGTTTGTCATGTAATTGGCAT 59.409 34.615 0.00 0.00 29.98 4.40
385 386 7.115236 CCAGTGTCATTGTTTGTCATGTAATTG 59.885 37.037 0.00 0.00 0.00 2.32
393 394 2.373224 TGCCAGTGTCATTGTTTGTCA 58.627 42.857 0.00 0.00 0.00 3.58
398 399 0.604578 GGCATGCCAGTGTCATTGTT 59.395 50.000 32.08 0.00 35.81 2.83
404 405 0.181114 TCATAGGGCATGCCAGTGTC 59.819 55.000 36.56 19.69 37.98 3.67
408 409 3.755378 GTCTTATTCATAGGGCATGCCAG 59.245 47.826 36.56 21.78 37.98 4.85
414 415 2.037251 GCGAGGTCTTATTCATAGGGCA 59.963 50.000 0.00 0.00 0.00 5.36
415 416 2.613223 GGCGAGGTCTTATTCATAGGGC 60.613 54.545 0.00 0.00 0.00 5.19
416 417 2.632996 TGGCGAGGTCTTATTCATAGGG 59.367 50.000 0.00 0.00 0.00 3.53
421 422 3.334691 CACTTTGGCGAGGTCTTATTCA 58.665 45.455 0.00 0.00 0.00 2.57
426 427 0.182775 AACCACTTTGGCGAGGTCTT 59.817 50.000 0.00 0.00 42.67 3.01
443 444 4.839668 TGTTTAGCATGGTTACCACAAC 57.160 40.909 6.10 5.84 35.80 3.32
479 481 2.499289 TCAGCCACCAATGTTTGTTGTT 59.501 40.909 0.00 0.00 0.00 2.83
525 528 3.581770 CCTACTAGCATTAACCCCTACCC 59.418 52.174 0.00 0.00 0.00 3.69
532 535 3.467803 CAGTGGCCTACTAGCATTAACC 58.532 50.000 3.32 0.00 37.60 2.85
538 541 1.264749 CCACCAGTGGCCTACTAGCA 61.265 60.000 9.78 0.00 44.73 3.49
552 555 2.112297 GTTCGTTCCCTGCCACCA 59.888 61.111 0.00 0.00 0.00 4.17
561 564 0.535797 CAGGGTCTAGGGTTCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
565 568 1.486211 ACATCAGGGTCTAGGGTTCG 58.514 55.000 0.00 0.00 0.00 3.95
579 582 1.490490 GTGCTCATCCCCCTAACATCA 59.510 52.381 0.00 0.00 0.00 3.07
582 585 0.911769 CAGTGCTCATCCCCCTAACA 59.088 55.000 0.00 0.00 0.00 2.41
583 586 0.464554 GCAGTGCTCATCCCCCTAAC 60.465 60.000 8.18 0.00 0.00 2.34
592 595 0.812811 CATAGTGCCGCAGTGCTCAT 60.813 55.000 14.33 4.48 0.00 2.90
604 607 1.212616 GCCACTGTCGATCATAGTGC 58.787 55.000 12.91 7.24 40.26 4.40
605 608 2.467838 CTGCCACTGTCGATCATAGTG 58.532 52.381 11.88 11.88 41.04 2.74
606 609 1.410517 CCTGCCACTGTCGATCATAGT 59.589 52.381 0.00 0.00 0.00 2.12
607 610 1.269988 CCCTGCCACTGTCGATCATAG 60.270 57.143 0.00 0.00 0.00 2.23
619 622 1.304381 TTGATCAAGCCCCTGCCAC 60.304 57.895 3.38 0.00 38.69 5.01
642 645 2.916502 TACCGCATGGCATCACCGTC 62.917 60.000 0.00 0.00 43.94 4.79
648 651 0.039798 CATTGCTACCGCATGGCATC 60.040 55.000 0.00 0.00 45.37 3.91
670 673 1.627550 GGTCTTCTTTGTCCGCGAGC 61.628 60.000 8.23 0.00 0.00 5.03
673 676 1.566018 GGTGGTCTTCTTTGTCCGCG 61.566 60.000 0.00 0.00 0.00 6.46
693 696 2.058595 CCTCCTACCCCACTCCACG 61.059 68.421 0.00 0.00 0.00 4.94
696 699 0.338814 TCTTCCTCCTACCCCACTCC 59.661 60.000 0.00 0.00 0.00 3.85
714 717 4.362470 TCTGGATCCAATGGTCATCATC 57.638 45.455 17.00 0.00 34.44 2.92
740 743 6.836527 TCAAAAAGTCAATTTTCCTGGTCCTA 59.163 34.615 0.00 0.00 40.27 2.94
795 798 7.739444 AGAGTATAATGGGAAAGGTGGATATCA 59.261 37.037 4.83 0.00 0.00 2.15
837 841 3.969250 TTCAGGTGCGCCGGATTCC 62.969 63.158 20.05 0.77 38.71 3.01
967 988 3.612247 CTGGAGGGAAGTGGCGTGG 62.612 68.421 0.00 0.00 0.00 4.94
968 989 2.046892 CTGGAGGGAAGTGGCGTG 60.047 66.667 0.00 0.00 0.00 5.34
969 990 4.021925 GCTGGAGGGAAGTGGCGT 62.022 66.667 0.00 0.00 0.00 5.68
988 1009 3.302347 GAGTGCCGTGGAGTGGAGG 62.302 68.421 0.00 0.00 0.00 4.30
1118 1140 4.073025 TAGGGTTACCGCGGGGGA 62.073 66.667 31.76 12.48 43.47 4.81
1120 1142 4.231439 GCTAGGGTTACCGCGGGG 62.231 72.222 31.76 18.33 43.47 5.73
1343 1382 3.052793 ACGAGAGAGGGGGAGAATAAGAA 60.053 47.826 0.00 0.00 0.00 2.52
1344 1383 2.514582 ACGAGAGAGGGGGAGAATAAGA 59.485 50.000 0.00 0.00 0.00 2.10
1352 1391 2.691779 GGGAGACGAGAGAGGGGGA 61.692 68.421 0.00 0.00 0.00 4.81
1392 1444 4.980805 GCCACCACCGAACGAGCA 62.981 66.667 0.00 0.00 0.00 4.26
1419 1471 3.969642 GAACCGCAGCAATTGGCCG 62.970 63.158 7.72 0.82 46.50 6.13
1420 1472 2.125952 GAACCGCAGCAATTGGCC 60.126 61.111 7.72 0.00 46.50 5.36
1421 1473 1.444895 CTGAACCGCAGCAATTGGC 60.445 57.895 7.72 1.93 45.30 4.52
1422 1474 4.874534 CTGAACCGCAGCAATTGG 57.125 55.556 7.72 0.00 37.90 3.16
1452 1506 1.260206 CGAGGAACAGATCGAACACG 58.740 55.000 0.00 0.00 41.40 4.49
1475 1529 1.081708 GGCTAAAAACACCGTGCCG 60.082 57.895 0.00 0.00 0.00 5.69
1489 1543 6.133356 CCCTGAAACCCATAATAAAAGGCTA 58.867 40.000 0.00 0.00 0.00 3.93
1490 1544 4.962362 CCCTGAAACCCATAATAAAAGGCT 59.038 41.667 0.00 0.00 0.00 4.58
1491 1545 4.714802 ACCCTGAAACCCATAATAAAAGGC 59.285 41.667 0.00 0.00 0.00 4.35
1492 1546 6.867519 AACCCTGAAACCCATAATAAAAGG 57.132 37.500 0.00 0.00 0.00 3.11
1494 1548 8.808092 CACTAAACCCTGAAACCCATAATAAAA 58.192 33.333 0.00 0.00 0.00 1.52
1495 1549 8.171400 TCACTAAACCCTGAAACCCATAATAAA 58.829 33.333 0.00 0.00 0.00 1.40
1496 1550 7.700846 TCACTAAACCCTGAAACCCATAATAA 58.299 34.615 0.00 0.00 0.00 1.40
1497 1551 7.273457 TCACTAAACCCTGAAACCCATAATA 57.727 36.000 0.00 0.00 0.00 0.98
1498 1552 6.147437 TCACTAAACCCTGAAACCCATAAT 57.853 37.500 0.00 0.00 0.00 1.28
1499 1553 5.586155 TCACTAAACCCTGAAACCCATAA 57.414 39.130 0.00 0.00 0.00 1.90
1500 1554 5.586155 TTCACTAAACCCTGAAACCCATA 57.414 39.130 0.00 0.00 0.00 2.74
1504 1558 4.560716 GCCATTTCACTAAACCCTGAAACC 60.561 45.833 0.00 0.00 38.80 3.27
1566 1643 3.146847 ACCTTTTCGGGTGAGATTGTTC 58.853 45.455 0.00 0.00 38.30 3.18
1587 1664 7.544566 GTGTCGACTGAAATCTATTAAGGTTCA 59.455 37.037 17.92 0.00 0.00 3.18
1609 1686 7.861630 TCAAAACTAACAGAAGCTATTGTGTC 58.138 34.615 4.00 0.00 41.73 3.67
1643 1720 6.600882 ACTCCCTTCAGAAACGACTATTAA 57.399 37.500 0.00 0.00 0.00 1.40
1647 1724 4.950205 AAACTCCCTTCAGAAACGACTA 57.050 40.909 0.00 0.00 0.00 2.59
1714 1791 4.666512 ACTGAAGACACCCTGCATTTAAT 58.333 39.130 0.00 0.00 27.78 1.40
1737 1814 4.911514 ATGTACCAAACGCTTTCTTGTT 57.088 36.364 0.00 0.00 0.00 2.83
1792 1870 2.540383 AGGTTCTCAGATGCTGTACCA 58.460 47.619 13.90 0.00 34.06 3.25
1833 1911 2.279741 TCTGGCATAATCAAGACGCAC 58.720 47.619 0.00 0.00 0.00 5.34
1875 1953 4.579270 ACGAAAGCATAAGTAGCGAAAC 57.421 40.909 0.00 0.00 37.01 2.78
1890 1968 6.143278 GTGCACCCACTAATTTTAAACGAAAG 59.857 38.462 5.22 0.00 38.93 2.62
1894 1972 4.231439 GGTGCACCCACTAATTTTAAACG 58.769 43.478 26.31 0.00 41.75 3.60
2313 2391 2.804527 CAACTGCACCTGATGATATCCG 59.195 50.000 0.00 0.00 0.00 4.18
2395 2473 9.341899 GGATGACACAATAGAAAACATGTAAAC 57.658 33.333 0.00 0.00 0.00 2.01
2396 2474 9.072375 TGGATGACACAATAGAAAACATGTAAA 57.928 29.630 0.00 0.00 0.00 2.01
2397 2475 8.628630 TGGATGACACAATAGAAAACATGTAA 57.371 30.769 0.00 0.00 0.00 2.41
2479 2559 7.878127 TCGCCCTAAAATTTGAGAATAGGATAG 59.122 37.037 12.57 5.63 0.00 2.08
2491 2571 3.911964 CGACTTGTTCGCCCTAAAATTTG 59.088 43.478 0.00 0.00 41.87 2.32
2566 2646 3.005367 AGTGGCATAAAACAAAACCCTCG 59.995 43.478 0.00 0.00 0.00 4.63
2621 2701 4.290942 AGGGAGGAATCAAACTACGAGAT 58.709 43.478 0.00 0.00 0.00 2.75
2764 2889 4.130118 GCACATAAGAACCCATACCTGAG 58.870 47.826 0.00 0.00 0.00 3.35
3160 3285 2.907634 TGCAAAGTTACCTGTCGTTCA 58.092 42.857 0.00 0.00 0.00 3.18
3180 3305 4.447138 TCAAAGTGTAACAACTGGGGAT 57.553 40.909 0.00 0.00 41.43 3.85
3237 3362 2.825532 TGGCCCTAAATTTCAGTCAAGC 59.174 45.455 0.00 0.00 0.00 4.01
3238 3363 4.082125 ACTGGCCCTAAATTTCAGTCAAG 58.918 43.478 0.00 0.00 34.00 3.02
3242 3367 3.525800 ACACTGGCCCTAAATTTCAGT 57.474 42.857 0.00 0.00 38.99 3.41
3295 3420 2.170187 AGCATTTGTCACCAAAAAGGCA 59.830 40.909 7.41 0.00 43.43 4.75
3371 3497 9.344772 AGAAGTCGTCTCATAACATCTAATACT 57.655 33.333 0.00 0.00 0.00 2.12
3479 3606 6.061441 TGACACCATTATGTTCTTTGTCTGT 58.939 36.000 0.00 0.00 34.33 3.41
3605 3732 0.740737 AGCATTGCGCCAGTAAATCC 59.259 50.000 4.18 0.00 44.04 3.01
3616 3743 3.044986 GTTGGCATACATAAGCATTGCG 58.955 45.455 2.38 0.00 34.17 4.85
3652 3779 4.021280 TGAATGCATAGTGCCACAATTGTT 60.021 37.500 8.77 0.00 44.23 2.83
3653 3780 3.510753 TGAATGCATAGTGCCACAATTGT 59.489 39.130 4.92 4.92 44.23 2.71
3699 3827 5.232463 CAGTGCAAAGCCAAAGACATAAAT 58.768 37.500 0.00 0.00 0.00 1.40
3734 3862 3.421844 ACAGGGTTTGCTTCCTATGAAC 58.578 45.455 0.00 0.00 0.00 3.18
3763 3891 9.965824 GTTTTTCAGGAACTTCTGATATTGAAA 57.034 29.630 0.00 0.00 42.57 2.69
3783 3913 5.941948 ACCTACAGTGCTACATGTTTTTC 57.058 39.130 2.30 0.00 0.00 2.29
3804 4115 8.984891 TGGTCAATAAACATCATGATGAAAAC 57.015 30.769 36.37 22.52 41.20 2.43
3817 4128 8.511321 CAGTTAATTGCTACTGGTCAATAAACA 58.489 33.333 8.50 0.00 38.44 2.83
3851 4373 8.050778 TCAACAGGATACATAAAAACCATCAC 57.949 34.615 0.00 0.00 41.41 3.06
3890 4412 4.072131 GAGATGACCAAAGTTAAGCACCA 58.928 43.478 0.00 0.00 0.00 4.17
3908 4430 7.123997 GGACCTACATACATGAGATGATGAGAT 59.876 40.741 16.05 1.71 0.00 2.75
3909 4431 6.435591 GGACCTACATACATGAGATGATGAGA 59.564 42.308 16.05 0.42 0.00 3.27
3910 4432 6.210185 TGGACCTACATACATGAGATGATGAG 59.790 42.308 16.05 10.67 0.00 2.90
3911 4433 6.077322 TGGACCTACATACATGAGATGATGA 58.923 40.000 16.05 3.99 0.00 2.92
3912 4434 6.350629 TGGACCTACATACATGAGATGATG 57.649 41.667 16.05 6.94 0.00 3.07
3913 4435 6.727697 TCATGGACCTACATACATGAGATGAT 59.272 38.462 16.05 6.21 43.23 2.45
3914 4436 6.077322 TCATGGACCTACATACATGAGATGA 58.923 40.000 16.05 0.00 43.23 2.92
3915 4437 6.350629 TCATGGACCTACATACATGAGATG 57.649 41.667 0.00 5.24 43.23 2.90
4457 5061 5.049405 CGAGAGTTTCAGGTGCAAAGTATTT 60.049 40.000 0.00 0.00 40.26 1.40
4480 5084 7.008628 GGCTTTTGATCTTGAACAATAACATCG 59.991 37.037 0.00 0.00 0.00 3.84
4511 5115 7.624360 AAGTGTCTTTGTTCTGTGTTATCAA 57.376 32.000 0.00 0.00 0.00 2.57
4608 5212 5.523916 CAGGGTATGTCCTAAGAAAATCACG 59.476 44.000 0.00 0.00 34.92 4.35
4653 5257 7.910584 TGATCAGCATATAAGGATAAGCTTCA 58.089 34.615 0.00 0.00 39.05 3.02
4721 5326 8.526978 CCCTCTATAATTTCTCGAGATTCATCA 58.473 37.037 17.44 0.00 0.00 3.07
4748 5353 4.574674 AGCCTTGTATTCATCAACCAGA 57.425 40.909 0.00 0.00 0.00 3.86
4952 5557 9.182214 AGTCAATATGCCCATATATCAAATCAC 57.818 33.333 1.49 0.00 33.86 3.06
4984 5618 1.343142 TCAGCAAGGTTTCGAGTAGCA 59.657 47.619 0.00 0.00 0.00 3.49
5015 5649 5.008911 TCAACAAGGTCATGTGAGAACAATG 59.991 40.000 0.00 0.00 32.81 2.82
5094 5728 7.933577 TGCCAACGATCAGAATAGATCTATTTT 59.066 33.333 25.21 18.58 41.74 1.82
5106 5740 0.955428 GCCACTGCCAACGATCAGAA 60.955 55.000 0.00 0.00 34.57 3.02
5109 5743 0.608856 AATGCCACTGCCAACGATCA 60.609 50.000 0.00 0.00 36.33 2.92
5123 5757 7.997223 ACTAGGGTTAAAGGATTTAGTAATGCC 59.003 37.037 0.00 0.00 42.24 4.40
5196 5833 5.568620 AGGAGTCATGACTTAAAAGGTGT 57.431 39.130 28.46 3.10 42.66 4.16
5202 5839 7.979786 AGGATCTTAGGAGTCATGACTTAAA 57.020 36.000 28.46 20.01 42.66 1.52
5337 5976 5.178797 ACTCCAAGTATGAACCTTGATTCG 58.821 41.667 1.89 0.00 41.44 3.34
5472 6122 0.250901 GGGGTTGAGCTTGAGCAGAA 60.251 55.000 5.70 0.00 45.16 3.02
5593 6243 0.394216 CCCGATTGCAGTGGATTCCA 60.394 55.000 0.00 0.00 0.00 3.53
5608 6258 2.301870 ACAGAACAGCATAAAGACCCGA 59.698 45.455 0.00 0.00 0.00 5.14
5626 6276 4.209452 ACAGATTGTACACGCAAAACAG 57.791 40.909 0.00 0.00 31.63 3.16
5691 6343 3.751518 AGAAAGGTCGGCACAATAACTT 58.248 40.909 0.00 0.00 0.00 2.66
5692 6344 3.418684 AGAAAGGTCGGCACAATAACT 57.581 42.857 0.00 0.00 0.00 2.24
5726 6384 5.886960 AGATTACATTTCTGGCAACTGTC 57.113 39.130 0.00 0.00 36.78 3.51
5818 6484 3.748568 GCCTAGGAGACAAGTGAAAACTG 59.251 47.826 14.75 0.00 0.00 3.16
5841 6507 7.386059 TCAAAGAGTGACAAGATACATAAGCA 58.614 34.615 0.00 0.00 0.00 3.91
5918 6600 6.969043 ACTATCACAATGGACCCTCAATAAA 58.031 36.000 0.00 0.00 0.00 1.40
5921 6603 5.456921 AACTATCACAATGGACCCTCAAT 57.543 39.130 0.00 0.00 0.00 2.57
5931 6613 4.088923 CGTGCTTGCAAAACTATCACAATG 59.911 41.667 0.00 0.00 0.00 2.82
5936 6618 3.187637 GGTACGTGCTTGCAAAACTATCA 59.812 43.478 3.01 0.00 0.00 2.15
5957 6639 7.060174 CCGTTGAAAATTTCATGTTTACTACGG 59.940 37.037 21.71 21.71 39.84 4.02
5958 6640 7.408921 GCCGTTGAAAATTTCATGTTTACTACG 60.409 37.037 9.41 12.54 39.84 3.51
5962 6644 6.419413 TCAGCCGTTGAAAATTTCATGTTTAC 59.581 34.615 9.41 3.58 39.84 2.01
5963 6645 6.507900 TCAGCCGTTGAAAATTTCATGTTTA 58.492 32.000 9.41 0.00 39.84 2.01
5966 6648 4.582701 TCAGCCGTTGAAAATTTCATGT 57.417 36.364 9.41 0.00 39.84 3.21
5967 6649 4.201647 GCATCAGCCGTTGAAAATTTCATG 60.202 41.667 9.41 4.73 39.77 3.07
5968 6650 3.928375 GCATCAGCCGTTGAAAATTTCAT 59.072 39.130 9.41 0.00 39.77 2.57
5969 6651 3.243670 TGCATCAGCCGTTGAAAATTTCA 60.244 39.130 4.03 4.03 39.77 2.69
5970 6652 3.316283 TGCATCAGCCGTTGAAAATTTC 58.684 40.909 0.00 0.00 39.77 2.17
6010 6692 5.559799 CGGCTACCTTATCTTACGTACAGAC 60.560 48.000 0.00 0.00 0.00 3.51
6017 6699 3.314635 AGTGTCGGCTACCTTATCTTACG 59.685 47.826 0.00 0.00 0.00 3.18
6019 6701 4.340381 GGAAGTGTCGGCTACCTTATCTTA 59.660 45.833 0.00 0.00 0.00 2.10
6031 6713 1.737008 GAACGGAGGAAGTGTCGGC 60.737 63.158 0.00 0.00 0.00 5.54
6032 6714 1.443872 CGAACGGAGGAAGTGTCGG 60.444 63.158 0.00 0.00 0.00 4.79
6033 6715 2.087009 GCGAACGGAGGAAGTGTCG 61.087 63.158 0.00 0.00 0.00 4.35
6036 6718 1.156736 ATTTGCGAACGGAGGAAGTG 58.843 50.000 0.00 0.00 0.00 3.16
6041 6723 4.331717 ACAACTTATATTTGCGAACGGAGG 59.668 41.667 0.00 0.00 0.00 4.30
6083 6765 3.362870 CTCCCAGGAGCAGAAATTTCT 57.637 47.619 15.11 15.11 35.31 2.52
6106 6792 6.018180 GGTAGTTCATATTAAAAGGGAGCACG 60.018 42.308 0.00 0.00 0.00 5.34
6131 6817 4.384846 GCTTGTTCACTCATTTCAATGCAG 59.615 41.667 0.00 0.00 36.36 4.41
6220 6911 0.324943 GTGGCTGCTTCTTACTCCCA 59.675 55.000 0.00 0.00 0.00 4.37
6255 6951 7.156876 AGCCATCGAAGTTCAATTATTTTCA 57.843 32.000 3.32 0.00 0.00 2.69
6273 6969 6.989169 AGAGAATTATGTGTGTTCTAGCCATC 59.011 38.462 0.00 0.00 32.67 3.51
6293 6993 6.501781 ACGACGTTTTTCTTAAGAGAGAGAA 58.498 36.000 5.12 0.00 32.44 2.87
6320 7020 8.346300 ACATTGTAACTGTATGACTCTATCGAG 58.654 37.037 0.00 0.00 43.10 4.04
6321 7021 8.129211 CACATTGTAACTGTATGACTCTATCGA 58.871 37.037 0.00 0.00 0.00 3.59
6322 7022 8.129211 TCACATTGTAACTGTATGACTCTATCG 58.871 37.037 0.00 0.00 0.00 2.92
6323 7023 9.973450 ATCACATTGTAACTGTATGACTCTATC 57.027 33.333 0.00 0.00 0.00 2.08
6330 7030 5.748630 GCTCGATCACATTGTAACTGTATGA 59.251 40.000 0.00 0.00 0.00 2.15
6336 7036 2.094182 ACCGCTCGATCACATTGTAACT 60.094 45.455 0.00 0.00 0.00 2.24
6355 7055 0.168128 GTGTGTAATGGCTCGCAACC 59.832 55.000 0.00 0.00 0.00 3.77
6356 7056 0.871722 TGTGTGTAATGGCTCGCAAC 59.128 50.000 0.00 0.00 0.00 4.17
6357 7057 1.535028 CTTGTGTGTAATGGCTCGCAA 59.465 47.619 0.00 0.00 33.33 4.85
6358 7058 1.155889 CTTGTGTGTAATGGCTCGCA 58.844 50.000 0.00 0.00 0.00 5.10
6359 7059 1.394917 CTCTTGTGTGTAATGGCTCGC 59.605 52.381 0.00 0.00 0.00 5.03
6412 7116 8.943002 CCGTGTAAAGTTGGAATACTATTTTCT 58.057 33.333 0.00 0.00 0.00 2.52
6414 7118 8.508875 CACCGTGTAAAGTTGGAATACTATTTT 58.491 33.333 0.00 0.00 0.00 1.82
6416 7120 6.596497 CCACCGTGTAAAGTTGGAATACTATT 59.404 38.462 0.00 0.00 0.00 1.73
6417 7121 6.110707 CCACCGTGTAAAGTTGGAATACTAT 58.889 40.000 0.00 0.00 0.00 2.12
6418 7122 5.481105 CCACCGTGTAAAGTTGGAATACTA 58.519 41.667 0.00 0.00 0.00 1.82
6419 7123 4.320870 CCACCGTGTAAAGTTGGAATACT 58.679 43.478 0.00 0.00 0.00 2.12
6420 7124 3.437741 CCCACCGTGTAAAGTTGGAATAC 59.562 47.826 0.00 0.00 0.00 1.89
6421 7125 3.559597 CCCCACCGTGTAAAGTTGGAATA 60.560 47.826 0.00 0.00 0.00 1.75
6422 7126 2.510613 CCCACCGTGTAAAGTTGGAAT 58.489 47.619 0.00 0.00 0.00 3.01
6423 7127 1.477195 CCCCACCGTGTAAAGTTGGAA 60.477 52.381 0.00 0.00 0.00 3.53
6424 7128 0.108963 CCCCACCGTGTAAAGTTGGA 59.891 55.000 0.00 0.00 0.00 3.53
6425 7129 0.891904 CCCCCACCGTGTAAAGTTGG 60.892 60.000 0.00 0.00 0.00 3.77
6426 7130 0.179012 ACCCCCACCGTGTAAAGTTG 60.179 55.000 0.00 0.00 0.00 3.16
6427 7131 0.552363 AACCCCCACCGTGTAAAGTT 59.448 50.000 0.00 0.00 0.00 2.66
6428 7132 0.552363 AAACCCCCACCGTGTAAAGT 59.448 50.000 0.00 0.00 0.00 2.66
6429 7133 1.241165 GAAACCCCCACCGTGTAAAG 58.759 55.000 0.00 0.00 0.00 1.85
6430 7134 0.178995 GGAAACCCCCACCGTGTAAA 60.179 55.000 0.00 0.00 0.00 2.01
6431 7135 1.351080 TGGAAACCCCCACCGTGTAA 61.351 55.000 0.00 0.00 0.00 2.41
6432 7136 1.351080 TTGGAAACCCCCACCGTGTA 61.351 55.000 0.00 0.00 35.62 2.90
6433 7137 2.634193 CTTGGAAACCCCCACCGTGT 62.634 60.000 0.00 0.00 35.62 4.49
6434 7138 1.901464 CTTGGAAACCCCCACCGTG 60.901 63.158 0.00 0.00 35.62 4.94
6435 7139 1.940242 AACTTGGAAACCCCCACCGT 61.940 55.000 0.00 0.00 35.62 4.83
6436 7140 1.152631 AACTTGGAAACCCCCACCG 60.153 57.895 0.00 0.00 35.62 4.94
6437 7141 0.830444 GGAACTTGGAAACCCCCACC 60.830 60.000 0.00 0.00 35.62 4.61
6438 7142 0.105913 TGGAACTTGGAAACCCCCAC 60.106 55.000 0.00 0.00 35.62 4.61
6439 7143 0.637195 TTGGAACTTGGAAACCCCCA 59.363 50.000 0.00 0.00 0.00 4.96
6440 7144 1.045407 GTTGGAACTTGGAAACCCCC 58.955 55.000 0.00 0.00 0.00 5.40
6441 7145 1.045407 GGTTGGAACTTGGAAACCCC 58.955 55.000 0.00 0.00 36.81 4.95
6442 7146 1.783071 TGGTTGGAACTTGGAAACCC 58.217 50.000 0.00 0.00 41.17 4.11
6443 7147 3.897141 TTTGGTTGGAACTTGGAAACC 57.103 42.857 0.00 0.00 42.03 3.27
6444 7148 4.868171 GTCTTTTGGTTGGAACTTGGAAAC 59.132 41.667 0.00 0.00 0.00 2.78
6445 7149 4.081365 GGTCTTTTGGTTGGAACTTGGAAA 60.081 41.667 0.00 0.00 0.00 3.13
6446 7150 3.449377 GGTCTTTTGGTTGGAACTTGGAA 59.551 43.478 0.00 0.00 0.00 3.53
6447 7151 3.028130 GGTCTTTTGGTTGGAACTTGGA 58.972 45.455 0.00 0.00 0.00 3.53
6448 7152 2.102420 GGGTCTTTTGGTTGGAACTTGG 59.898 50.000 0.00 0.00 0.00 3.61
6449 7153 2.223711 CGGGTCTTTTGGTTGGAACTTG 60.224 50.000 0.00 0.00 0.00 3.16
6450 7154 2.028876 CGGGTCTTTTGGTTGGAACTT 58.971 47.619 0.00 0.00 0.00 2.66
6451 7155 1.064240 ACGGGTCTTTTGGTTGGAACT 60.064 47.619 0.00 0.00 0.00 3.01
6452 7156 1.395635 ACGGGTCTTTTGGTTGGAAC 58.604 50.000 0.00 0.00 0.00 3.62
6468 7172 5.652518 TGGAACAAACTTTCCTTTTTACGG 58.347 37.500 3.66 0.00 44.89 4.02
6489 8521 0.178767 TCTGATGCCTGACGGATTGG 59.821 55.000 0.00 0.00 0.00 3.16
6497 8529 0.755079 CTCCGGATTCTGATGCCTGA 59.245 55.000 3.57 0.00 0.00 3.86
6516 8548 2.598632 CCCGATCTTTCCGATGCGC 61.599 63.158 0.00 0.00 30.84 6.09
6561 8593 3.869272 CTGCAATCCGCGAGCCAC 61.869 66.667 8.23 0.00 46.97 5.01
6765 8797 2.099431 CCTGCTGCTGTCGAGCTTC 61.099 63.158 0.00 0.00 46.39 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.