Multiple sequence alignment - TraesCS1D01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G107000 chr1D 100.000 4794 0 0 1 4794 99800453 99805246 0.000000e+00 8853.0
1 TraesCS1D01G107000 chr1D 98.525 746 10 1 2528 3273 2467265 2468009 0.000000e+00 1315.0
2 TraesCS1D01G107000 chr1D 87.870 338 26 8 1478 1801 19790956 19791292 2.710000e-102 383.0
3 TraesCS1D01G107000 chr1D 95.755 212 9 0 1 212 99791106 99790895 4.590000e-90 342.0
4 TraesCS1D01G107000 chr1A 92.903 2170 81 30 378 2530 95182803 95184916 0.000000e+00 3086.0
5 TraesCS1D01G107000 chr1A 95.587 1065 24 12 3268 4313 95184911 95185971 0.000000e+00 1685.0
6 TraesCS1D01G107000 chr1B 86.694 2157 150 67 415 2527 152525105 152523042 0.000000e+00 2266.0
7 TraesCS1D01G107000 chr1B 90.981 754 56 9 3267 4014 152523048 152522301 0.000000e+00 1005.0
8 TraesCS1D01G107000 chr1B 84.384 666 64 20 1519 2161 22894695 22895343 6.820000e-173 617.0
9 TraesCS1D01G107000 chr1B 93.651 126 8 0 4667 4792 152521694 152521569 6.330000e-44 189.0
10 TraesCS1D01G107000 chr1B 89.855 138 14 0 4389 4526 152502100 152501963 1.370000e-40 178.0
11 TraesCS1D01G107000 chr1B 90.400 125 12 0 4668 4792 152501661 152501537 1.070000e-36 165.0
12 TraesCS1D01G107000 chr1B 75.758 297 32 26 4329 4592 152522061 152521772 3.920000e-21 113.0
13 TraesCS1D01G107000 chr1B 90.541 74 7 0 261 334 152525300 152525227 1.100000e-16 99.0
14 TraesCS1D01G107000 chr1B 90.141 71 5 1 4318 4386 152502199 152502129 1.840000e-14 91.6
15 TraesCS1D01G107000 chr7D 99.332 748 5 0 2526 3273 610709910 610710657 0.000000e+00 1354.0
16 TraesCS1D01G107000 chr7D 98.529 748 11 0 2526 3273 568379506 568380253 0.000000e+00 1321.0
17 TraesCS1D01G107000 chr7D 98.400 750 11 1 2524 3273 534621540 534622288 0.000000e+00 1317.0
18 TraesCS1D01G107000 chr3D 99.195 745 6 0 2529 3273 306014640 306013896 0.000000e+00 1343.0
19 TraesCS1D01G107000 chr3D 94.907 216 11 0 2 217 159654076 159654291 5.940000e-89 339.0
20 TraesCS1D01G107000 chr2D 98.529 748 11 0 2526 3273 638774726 638775473 0.000000e+00 1321.0
21 TraesCS1D01G107000 chr2D 89.366 978 73 15 3267 4239 646418973 646419924 0.000000e+00 1201.0
22 TraesCS1D01G107000 chr2D 82.638 1175 108 33 1183 2318 646417625 646418742 0.000000e+00 952.0
23 TraesCS1D01G107000 chr2D 87.870 338 26 8 1478 1801 140467386 140467722 2.710000e-102 383.0
24 TraesCS1D01G107000 chr2D 95.775 213 9 0 1 213 4454092 4453880 1.280000e-90 344.0
25 TraesCS1D01G107000 chr2D 95.755 212 9 0 2 213 406267271 406267060 4.590000e-90 342.0
26 TraesCS1D01G107000 chr2D 86.458 96 13 0 713 808 646417263 646417358 6.560000e-19 106.0
27 TraesCS1D01G107000 chr7A 98.658 745 9 1 2529 3273 183660965 183661708 0.000000e+00 1319.0
28 TraesCS1D01G107000 chr5D 98.396 748 10 1 2528 3273 501157739 501156992 0.000000e+00 1314.0
29 TraesCS1D01G107000 chr5D 95.775 213 9 0 1 213 534059142 534058930 1.280000e-90 344.0
30 TraesCS1D01G107000 chr5B 97.884 756 16 0 2518 3273 699407986 699407231 0.000000e+00 1308.0
31 TraesCS1D01G107000 chr5B 87.888 322 23 9 1478 1798 468897267 468897573 9.810000e-97 364.0
32 TraesCS1D01G107000 chr2A 80.562 1317 135 63 969 2252 773230940 773229712 0.000000e+00 902.0
33 TraesCS1D01G107000 chr2A 88.968 562 48 8 3267 3823 773229423 773228871 0.000000e+00 682.0
34 TraesCS1D01G107000 chr2A 89.499 419 27 7 3822 4239 773228751 773228349 9.200000e-142 514.0
35 TraesCS1D01G107000 chr2A 80.120 166 17 11 716 877 773231143 773230990 5.070000e-20 110.0
36 TraesCS1D01G107000 chr2B 80.378 1111 134 49 1482 2527 789265345 789264254 0.000000e+00 767.0
37 TraesCS1D01G107000 chr2B 88.235 561 48 8 3267 3823 789264260 789263714 0.000000e+00 654.0
38 TraesCS1D01G107000 chr2B 88.745 462 33 10 3822 4282 789263632 789263189 9.070000e-152 547.0
39 TraesCS1D01G107000 chr2B 84.477 277 22 11 980 1256 789265871 789265616 2.210000e-63 254.0
40 TraesCS1D01G107000 chr2B 88.966 145 11 2 1315 1459 789265590 789265451 1.770000e-39 174.0
41 TraesCS1D01G107000 chr3B 84.234 666 65 19 1478 2119 350128866 350128217 3.170000e-171 612.0
42 TraesCS1D01G107000 chr3B 91.971 137 10 1 2116 2252 350032334 350032199 1.760000e-44 191.0
43 TraesCS1D01G107000 chr6A 87.385 325 25 9 1478 1801 496045845 496045536 4.560000e-95 359.0
44 TraesCS1D01G107000 chr6D 95.775 213 9 0 1 213 345776063 345776275 1.280000e-90 344.0
45 TraesCS1D01G107000 chr6D 95.755 212 9 0 2 213 362943186 362942975 4.590000e-90 342.0
46 TraesCS1D01G107000 chr6D 94.907 216 11 0 1 216 74828 74613 5.940000e-89 339.0
47 TraesCS1D01G107000 chr4D 95.775 213 9 0 1 213 30528876 30528664 1.280000e-90 344.0
48 TraesCS1D01G107000 chr6B 85.380 342 25 11 1478 1801 255078001 255077667 9.940000e-87 331.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G107000 chr1D 99800453 99805246 4793 False 8853.0 8853 100.00000 1 4794 1 chr1D.!!$F3 4793
1 TraesCS1D01G107000 chr1D 2467265 2468009 744 False 1315.0 1315 98.52500 2528 3273 1 chr1D.!!$F1 745
2 TraesCS1D01G107000 chr1A 95182803 95185971 3168 False 2385.5 3086 94.24500 378 4313 2 chr1A.!!$F1 3935
3 TraesCS1D01G107000 chr1B 152521569 152525300 3731 True 734.4 2266 87.52500 261 4792 5 chr1B.!!$R2 4531
4 TraesCS1D01G107000 chr1B 22894695 22895343 648 False 617.0 617 84.38400 1519 2161 1 chr1B.!!$F1 642
5 TraesCS1D01G107000 chr7D 610709910 610710657 747 False 1354.0 1354 99.33200 2526 3273 1 chr7D.!!$F3 747
6 TraesCS1D01G107000 chr7D 568379506 568380253 747 False 1321.0 1321 98.52900 2526 3273 1 chr7D.!!$F2 747
7 TraesCS1D01G107000 chr7D 534621540 534622288 748 False 1317.0 1317 98.40000 2524 3273 1 chr7D.!!$F1 749
8 TraesCS1D01G107000 chr3D 306013896 306014640 744 True 1343.0 1343 99.19500 2529 3273 1 chr3D.!!$R1 744
9 TraesCS1D01G107000 chr2D 638774726 638775473 747 False 1321.0 1321 98.52900 2526 3273 1 chr2D.!!$F2 747
10 TraesCS1D01G107000 chr2D 646417263 646419924 2661 False 753.0 1201 86.15400 713 4239 3 chr2D.!!$F3 3526
11 TraesCS1D01G107000 chr7A 183660965 183661708 743 False 1319.0 1319 98.65800 2529 3273 1 chr7A.!!$F1 744
12 TraesCS1D01G107000 chr5D 501156992 501157739 747 True 1314.0 1314 98.39600 2528 3273 1 chr5D.!!$R1 745
13 TraesCS1D01G107000 chr5B 699407231 699407986 755 True 1308.0 1308 97.88400 2518 3273 1 chr5B.!!$R1 755
14 TraesCS1D01G107000 chr2A 773228349 773231143 2794 True 552.0 902 84.78725 716 4239 4 chr2A.!!$R1 3523
15 TraesCS1D01G107000 chr2B 789263189 789265871 2682 True 479.2 767 86.16020 980 4282 5 chr2B.!!$R1 3302
16 TraesCS1D01G107000 chr3B 350128217 350128866 649 True 612.0 612 84.23400 1478 2119 1 chr3B.!!$R2 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.036952 ACCAAGTGCACTCATCCGAG 60.037 55.0 21.95 6.49 45.49 4.63 F
312 313 0.170116 CGGTATTGCCAATGTGCGTT 59.830 50.0 0.00 0.00 36.97 4.84 F
351 352 0.179137 CTGGTCTGTATTCGCGCAGA 60.179 55.0 8.75 9.67 39.17 4.26 F
362 363 0.457443 TCGCGCAGATGAGTTCTCAT 59.543 50.0 14.13 14.13 29.93 2.90 F
1563 1743 0.541764 GGATTTGGTTGGTGCAGGGA 60.542 55.0 0.00 0.00 0.00 4.20 F
1840 2078 1.359848 CCATCTTCGAGTTTGACCGG 58.640 55.0 0.00 0.00 0.00 5.28 F
3402 3734 0.252375 ATTGCAGGCTGGGTGGAAAT 60.252 50.0 17.64 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1668 0.390603 ATCACGAACGCCCAATCGAA 60.391 50.000 1.84 0.0 41.43 3.71 R
1539 1715 1.271934 TGCACCAACCAAATCCAATCG 59.728 47.619 0.00 0.0 0.00 3.34 R
1840 2078 2.735762 GCCAGACCTGAACATACGAGTC 60.736 54.545 0.00 0.0 0.00 3.36 R
2212 2468 2.859806 GCACAACCACAGAAGCACAATC 60.860 50.000 0.00 0.0 0.00 2.67 R
3402 3734 0.829333 AAGTGTGCAAATGGCCACAA 59.171 45.000 8.16 0.0 42.54 3.33 R
3695 4030 9.965902 AACTGATTTCTTCATATGTTTAGGAGT 57.034 29.630 1.90 0.0 32.72 3.85 R
4665 5331 0.389757 GCTCCTCTTATCCGTGGACC 59.610 60.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.918201 GCCTAGCTCGGCGGCATT 62.918 66.667 14.23 5.49 43.25 3.56
21 22 2.969238 CCTAGCTCGGCGGCATTG 60.969 66.667 19.61 10.28 34.17 2.82
22 23 3.643978 CTAGCTCGGCGGCATTGC 61.644 66.667 19.61 9.77 34.17 3.56
23 24 4.465480 TAGCTCGGCGGCATTGCA 62.465 61.111 19.61 0.00 36.28 4.08
26 27 4.170062 CTCGGCGGCATTGCACTG 62.170 66.667 10.53 7.16 36.28 3.66
30 31 4.789075 GCGGCATTGCACTGCTGG 62.789 66.667 31.63 22.31 46.50 4.85
31 32 4.124351 CGGCATTGCACTGCTGGG 62.124 66.667 25.82 13.60 43.42 4.45
32 33 2.993264 GGCATTGCACTGCTGGGT 60.993 61.111 25.78 0.00 41.95 4.51
33 34 2.260434 GCATTGCACTGCTGGGTG 59.740 61.111 20.72 0.00 39.12 4.61
44 45 4.802051 CTGGGTGCGGGTCCATGG 62.802 72.222 4.97 4.97 31.95 3.66
62 63 4.314440 GCTGCCACGGTGGACAGA 62.314 66.667 35.00 17.24 40.96 3.41
63 64 2.047844 CTGCCACGGTGGACAGAG 60.048 66.667 30.87 18.24 40.96 3.35
64 65 3.596066 CTGCCACGGTGGACAGAGG 62.596 68.421 30.87 15.64 40.96 3.69
65 66 3.626924 GCCACGGTGGACAGAGGT 61.627 66.667 30.65 0.00 40.96 3.85
66 67 2.343758 CCACGGTGGACAGAGGTG 59.656 66.667 22.77 0.00 40.96 4.00
67 68 2.357517 CACGGTGGACAGAGGTGC 60.358 66.667 0.00 0.00 35.66 5.01
68 69 2.842462 ACGGTGGACAGAGGTGCA 60.842 61.111 0.00 0.00 43.61 4.57
72 73 2.280797 TGGACAGAGGTGCAACGC 60.281 61.111 0.00 0.00 42.81 4.84
73 74 3.050275 GGACAGAGGTGCAACGCC 61.050 66.667 0.31 0.00 38.12 5.68
74 75 3.414700 GACAGAGGTGCAACGCCG 61.415 66.667 0.31 0.00 39.30 6.46
96 97 4.508128 GCTAGGCGCTGCACCGTA 62.508 66.667 7.64 0.00 35.14 4.02
97 98 2.278857 CTAGGCGCTGCACCGTAG 60.279 66.667 7.64 2.34 0.00 3.51
126 127 4.697756 GGCGTGGCAGGCACTACA 62.698 66.667 30.40 0.00 36.02 2.74
127 128 3.423154 GCGTGGCAGGCACTACAC 61.423 66.667 25.77 7.87 40.56 2.90
128 129 2.030412 CGTGGCAGGCACTACACA 59.970 61.111 23.66 0.00 42.95 3.72
129 130 1.596752 CGTGGCAGGCACTACACAA 60.597 57.895 23.66 0.00 42.95 3.33
130 131 1.163420 CGTGGCAGGCACTACACAAA 61.163 55.000 23.66 0.00 42.95 2.83
131 132 1.028905 GTGGCAGGCACTACACAAAA 58.971 50.000 19.73 0.00 42.55 2.44
132 133 1.001378 GTGGCAGGCACTACACAAAAG 60.001 52.381 19.73 0.00 42.55 2.27
133 134 0.598065 GGCAGGCACTACACAAAAGG 59.402 55.000 0.00 0.00 36.02 3.11
134 135 0.598065 GCAGGCACTACACAAAAGGG 59.402 55.000 0.00 0.00 36.02 3.95
135 136 1.981256 CAGGCACTACACAAAAGGGT 58.019 50.000 0.00 0.00 36.02 4.34
136 137 1.880027 CAGGCACTACACAAAAGGGTC 59.120 52.381 0.00 0.00 36.02 4.46
137 138 1.493022 AGGCACTACACAAAAGGGTCA 59.507 47.619 0.00 0.00 36.02 4.02
138 139 1.880027 GGCACTACACAAAAGGGTCAG 59.120 52.381 0.00 0.00 0.00 3.51
139 140 1.880027 GCACTACACAAAAGGGTCAGG 59.120 52.381 0.00 0.00 0.00 3.86
140 141 2.504367 CACTACACAAAAGGGTCAGGG 58.496 52.381 0.00 0.00 0.00 4.45
141 142 1.423921 ACTACACAAAAGGGTCAGGGG 59.576 52.381 0.00 0.00 0.00 4.79
142 143 1.423921 CTACACAAAAGGGTCAGGGGT 59.576 52.381 0.00 0.00 0.00 4.95
143 144 0.106217 ACACAAAAGGGTCAGGGGTG 60.106 55.000 0.00 0.00 0.00 4.61
144 145 0.106217 CACAAAAGGGTCAGGGGTGT 60.106 55.000 0.00 0.00 0.00 4.16
145 146 0.106217 ACAAAAGGGTCAGGGGTGTG 60.106 55.000 0.00 0.00 0.00 3.82
146 147 0.184933 CAAAAGGGTCAGGGGTGTGA 59.815 55.000 0.00 0.00 0.00 3.58
147 148 0.930726 AAAAGGGTCAGGGGTGTGAA 59.069 50.000 0.00 0.00 0.00 3.18
148 149 0.930726 AAAGGGTCAGGGGTGTGAAA 59.069 50.000 0.00 0.00 0.00 2.69
149 150 1.158007 AAGGGTCAGGGGTGTGAAAT 58.842 50.000 0.00 0.00 0.00 2.17
150 151 2.053747 AGGGTCAGGGGTGTGAAATA 57.946 50.000 0.00 0.00 0.00 1.40
151 152 1.916181 AGGGTCAGGGGTGTGAAATAG 59.084 52.381 0.00 0.00 0.00 1.73
152 153 1.633945 GGGTCAGGGGTGTGAAATAGT 59.366 52.381 0.00 0.00 0.00 2.12
153 154 2.041216 GGGTCAGGGGTGTGAAATAGTT 59.959 50.000 0.00 0.00 0.00 2.24
154 155 3.499745 GGGTCAGGGGTGTGAAATAGTTT 60.500 47.826 0.00 0.00 0.00 2.66
155 156 3.756963 GGTCAGGGGTGTGAAATAGTTTC 59.243 47.826 0.00 0.00 40.08 2.78
156 157 3.435671 GTCAGGGGTGTGAAATAGTTTCG 59.564 47.826 0.00 0.00 42.55 3.46
163 164 3.471495 GTGAAATAGTTTCGCACCCAG 57.529 47.619 10.21 0.00 46.56 4.45
164 165 2.812011 GTGAAATAGTTTCGCACCCAGT 59.188 45.455 10.21 0.00 46.56 4.00
165 166 3.252458 GTGAAATAGTTTCGCACCCAGTT 59.748 43.478 10.21 0.00 46.56 3.16
166 167 3.500680 TGAAATAGTTTCGCACCCAGTTC 59.499 43.478 0.00 0.00 42.55 3.01
167 168 2.851263 ATAGTTTCGCACCCAGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
168 169 2.851263 TAGTTTCGCACCCAGTTCAT 57.149 45.000 0.00 0.00 0.00 2.57
169 170 1.981256 AGTTTCGCACCCAGTTCATT 58.019 45.000 0.00 0.00 0.00 2.57
170 171 2.306847 AGTTTCGCACCCAGTTCATTT 58.693 42.857 0.00 0.00 0.00 2.32
171 172 2.693074 AGTTTCGCACCCAGTTCATTTT 59.307 40.909 0.00 0.00 0.00 1.82
172 173 2.791383 TTCGCACCCAGTTCATTTTG 57.209 45.000 0.00 0.00 0.00 2.44
173 174 1.686355 TCGCACCCAGTTCATTTTGT 58.314 45.000 0.00 0.00 0.00 2.83
174 175 1.336440 TCGCACCCAGTTCATTTTGTG 59.664 47.619 0.00 0.00 0.00 3.33
175 176 1.336440 CGCACCCAGTTCATTTTGTGA 59.664 47.619 0.00 0.00 34.25 3.58
176 177 2.223688 CGCACCCAGTTCATTTTGTGAA 60.224 45.455 0.00 0.00 44.36 3.18
191 192 9.452065 TCATTTTGTGAATTTATTTCGTTTCGA 57.548 25.926 0.00 0.00 37.13 3.71
192 193 9.712410 CATTTTGTGAATTTATTTCGTTTCGAG 57.288 29.630 0.00 0.00 37.14 4.04
193 194 8.844441 TTTTGTGAATTTATTTCGTTTCGAGT 57.156 26.923 0.00 0.00 37.14 4.18
194 195 8.844441 TTTGTGAATTTATTTCGTTTCGAGTT 57.156 26.923 0.00 0.00 37.14 3.01
195 196 8.483743 TTGTGAATTTATTTCGTTTCGAGTTC 57.516 30.769 0.00 0.00 37.14 3.01
196 197 7.631822 TGTGAATTTATTTCGTTTCGAGTTCA 58.368 30.769 0.00 0.00 37.14 3.18
197 198 8.123575 TGTGAATTTATTTCGTTTCGAGTTCAA 58.876 29.630 0.00 0.00 37.14 2.69
198 199 8.949953 GTGAATTTATTTCGTTTCGAGTTCAAA 58.050 29.630 0.00 0.00 37.14 2.69
199 200 9.504710 TGAATTTATTTCGTTTCGAGTTCAAAA 57.495 25.926 0.00 0.00 37.14 2.44
203 204 8.844441 TTATTTCGTTTCGAGTTCAAAATTGT 57.156 26.923 0.00 0.00 37.14 2.71
204 205 6.784068 TTTCGTTTCGAGTTCAAAATTGTC 57.216 33.333 0.00 0.00 37.14 3.18
205 206 5.472320 TCGTTTCGAGTTCAAAATTGTCA 57.528 34.783 0.00 0.00 0.00 3.58
206 207 5.870444 TCGTTTCGAGTTCAAAATTGTCAA 58.130 33.333 0.00 0.00 0.00 3.18
207 208 6.315551 TCGTTTCGAGTTCAAAATTGTCAAA 58.684 32.000 0.00 0.00 0.00 2.69
208 209 6.970043 TCGTTTCGAGTTCAAAATTGTCAAAT 59.030 30.769 0.00 0.00 0.00 2.32
209 210 7.486551 TCGTTTCGAGTTCAAAATTGTCAAATT 59.513 29.630 0.00 0.00 37.61 1.82
210 211 8.107564 CGTTTCGAGTTCAAAATTGTCAAATTT 58.892 29.630 0.00 0.00 45.81 1.82
211 212 9.198065 GTTTCGAGTTCAAAATTGTCAAATTTG 57.802 29.630 16.75 16.75 43.63 2.32
212 213 6.932051 TCGAGTTCAAAATTGTCAAATTTGC 58.068 32.000 17.69 9.16 43.63 3.68
213 214 6.756074 TCGAGTTCAAAATTGTCAAATTTGCT 59.244 30.769 17.69 11.69 43.63 3.91
214 215 7.277539 TCGAGTTCAAAATTGTCAAATTTGCTT 59.722 29.630 17.69 8.24 43.63 3.91
215 216 8.538856 CGAGTTCAAAATTGTCAAATTTGCTTA 58.461 29.630 17.69 6.36 43.63 3.09
238 239 3.733443 AAAAACCAAGTGCACTCATCC 57.267 42.857 21.95 0.00 0.00 3.51
239 240 1.238439 AAACCAAGTGCACTCATCCG 58.762 50.000 21.95 8.33 0.00 4.18
240 241 0.396435 AACCAAGTGCACTCATCCGA 59.604 50.000 21.95 0.00 0.00 4.55
241 242 0.036952 ACCAAGTGCACTCATCCGAG 60.037 55.000 21.95 6.49 45.49 4.63
242 243 0.247460 CCAAGTGCACTCATCCGAGA 59.753 55.000 21.95 0.00 42.34 4.04
243 244 1.354040 CAAGTGCACTCATCCGAGAC 58.646 55.000 21.95 0.00 42.34 3.36
244 245 0.247736 AAGTGCACTCATCCGAGACC 59.752 55.000 21.95 0.00 42.34 3.85
245 246 1.517257 GTGCACTCATCCGAGACCG 60.517 63.158 10.32 0.00 42.34 4.79
255 256 2.434359 CGAGACCGGGCAAGAACC 60.434 66.667 11.69 0.00 0.00 3.62
312 313 0.170116 CGGTATTGCCAATGTGCGTT 59.830 50.000 0.00 0.00 36.97 4.84
321 322 1.069022 CCAATGTGCGTTGGTGAAGAG 60.069 52.381 13.51 0.00 42.94 2.85
326 327 2.664851 CGTTGGTGAAGAGCCGCA 60.665 61.111 0.00 0.00 0.00 5.69
329 330 4.704833 TGGTGAAGAGCCGCAGCC 62.705 66.667 0.00 0.00 41.25 4.85
341 342 2.665000 GCAGCCAGCTGGTCTGTA 59.335 61.111 36.20 0.00 43.77 2.74
342 343 1.222936 GCAGCCAGCTGGTCTGTAT 59.777 57.895 36.20 17.85 43.77 2.29
344 345 1.661341 CAGCCAGCTGGTCTGTATTC 58.339 55.000 32.26 17.92 41.25 1.75
346 347 1.432270 GCCAGCTGGTCTGTATTCGC 61.432 60.000 32.81 11.40 41.25 4.70
347 348 1.148157 CCAGCTGGTCTGTATTCGCG 61.148 60.000 25.53 0.00 41.25 5.87
350 351 1.756375 GCTGGTCTGTATTCGCGCAG 61.756 60.000 8.75 2.62 0.00 5.18
351 352 0.179137 CTGGTCTGTATTCGCGCAGA 60.179 55.000 8.75 9.67 39.17 4.26
352 353 0.459899 TGGTCTGTATTCGCGCAGAT 59.540 50.000 15.56 2.53 42.72 2.90
353 354 0.855349 GGTCTGTATTCGCGCAGATG 59.145 55.000 15.56 0.00 42.72 2.90
354 355 1.536072 GGTCTGTATTCGCGCAGATGA 60.536 52.381 15.56 0.00 42.72 2.92
355 356 1.783711 GTCTGTATTCGCGCAGATGAG 59.216 52.381 15.56 1.75 42.72 2.90
356 357 1.405463 TCTGTATTCGCGCAGATGAGT 59.595 47.619 8.75 0.00 36.89 3.41
357 358 2.159240 TCTGTATTCGCGCAGATGAGTT 60.159 45.455 8.75 0.00 36.89 3.01
358 359 2.193447 TGTATTCGCGCAGATGAGTTC 58.807 47.619 8.75 0.00 0.00 3.01
362 363 0.457443 TCGCGCAGATGAGTTCTCAT 59.543 50.000 14.13 14.13 29.93 2.90
363 364 1.134995 TCGCGCAGATGAGTTCTCATT 60.135 47.619 15.16 4.77 29.93 2.57
364 365 1.005242 CGCGCAGATGAGTTCTCATTG 60.005 52.381 15.16 14.75 29.93 2.82
365 366 1.329906 GCGCAGATGAGTTCTCATTGG 59.670 52.381 15.16 11.66 29.93 3.16
366 367 2.625737 CGCAGATGAGTTCTCATTGGT 58.374 47.619 15.16 3.02 29.93 3.67
370 410 4.639310 GCAGATGAGTTCTCATTGGTGATT 59.361 41.667 15.16 0.00 32.98 2.57
374 414 7.120873 CAGATGAGTTCTCATTGGTGATTCTTT 59.879 37.037 15.16 0.00 32.98 2.52
375 415 8.324306 AGATGAGTTCTCATTGGTGATTCTTTA 58.676 33.333 15.16 0.00 32.98 1.85
376 416 7.912056 TGAGTTCTCATTGGTGATTCTTTAG 57.088 36.000 0.00 0.00 32.98 1.85
382 422 6.069440 TCTCATTGGTGATTCTTTAGGTCCAT 60.069 38.462 0.00 0.00 32.98 3.41
387 427 6.969043 TGGTGATTCTTTAGGTCCATACAAT 58.031 36.000 0.00 0.00 0.00 2.71
392 432 9.627123 TGATTCTTTAGGTCCATACAATAAAGG 57.373 33.333 6.33 0.00 37.20 3.11
396 436 4.497291 AGGTCCATACAATAAAGGCGAA 57.503 40.909 0.00 0.00 0.00 4.70
405 445 7.643764 CCATACAATAAAGGCGAAAACATGTAG 59.356 37.037 0.00 0.00 0.00 2.74
406 446 5.949735 ACAATAAAGGCGAAAACATGTAGG 58.050 37.500 0.00 0.00 0.00 3.18
407 447 5.475564 ACAATAAAGGCGAAAACATGTAGGT 59.524 36.000 0.00 0.00 0.00 3.08
408 448 6.015772 ACAATAAAGGCGAAAACATGTAGGTT 60.016 34.615 0.00 0.00 0.00 3.50
409 449 4.929819 AAAGGCGAAAACATGTAGGTTT 57.070 36.364 0.00 0.00 42.49 3.27
420 462 4.086457 ACATGTAGGTTTTCCATTCCACC 58.914 43.478 0.00 0.00 43.73 4.61
599 644 1.344763 AGAGAGGTTTGGTCCGACTTG 59.655 52.381 0.00 0.00 0.00 3.16
610 655 2.661537 CGACTTGAGCACGCACCA 60.662 61.111 0.00 0.00 0.00 4.17
902 951 4.701663 CGAGAAGCAAGCAAGGGA 57.298 55.556 0.00 0.00 0.00 4.20
923 976 4.357279 AGCCAGAGCCAACCAGCC 62.357 66.667 0.00 0.00 41.25 4.85
924 977 4.357279 GCCAGAGCCAACCAGCCT 62.357 66.667 0.00 0.00 0.00 4.58
925 978 2.045536 CCAGAGCCAACCAGCCTC 60.046 66.667 0.00 0.00 0.00 4.70
926 979 2.752358 CAGAGCCAACCAGCCTCA 59.248 61.111 0.00 0.00 0.00 3.86
927 980 1.376942 CAGAGCCAACCAGCCTCAG 60.377 63.158 0.00 0.00 0.00 3.35
928 981 2.749441 GAGCCAACCAGCCTCAGC 60.749 66.667 0.00 0.00 40.32 4.26
1448 1538 4.630111 GACTGATTCCAACCAAAATTGCA 58.370 39.130 0.00 0.00 0.00 4.08
1458 1548 5.993441 CCAACCAAAATTGCATCTTCTCTTT 59.007 36.000 0.00 0.00 0.00 2.52
1460 1550 7.349711 CAACCAAAATTGCATCTTCTCTTTTG 58.650 34.615 0.00 0.00 34.81 2.44
1461 1551 6.585416 ACCAAAATTGCATCTTCTCTTTTGT 58.415 32.000 0.00 0.00 33.77 2.83
1462 1552 7.049754 ACCAAAATTGCATCTTCTCTTTTGTT 58.950 30.769 0.00 0.00 33.77 2.83
1468 1558 7.807977 TTGCATCTTCTCTTTTGTTCTACTT 57.192 32.000 0.00 0.00 0.00 2.24
1469 1559 8.902540 TTGCATCTTCTCTTTTGTTCTACTTA 57.097 30.769 0.00 0.00 0.00 2.24
1470 1560 9.507329 TTGCATCTTCTCTTTTGTTCTACTTAT 57.493 29.630 0.00 0.00 0.00 1.73
1496 1668 2.494073 GCTAGCCTAGCCATAATCTCGT 59.506 50.000 12.88 0.00 45.95 4.18
1506 1678 2.480419 CCATAATCTCGTTCGATTGGGC 59.520 50.000 0.00 0.00 35.40 5.36
1513 1685 1.131826 GTTCGATTGGGCGTTCGTG 59.868 57.895 0.00 0.00 36.74 4.35
1539 1715 7.687941 TGGATGATTAACCTTTGTTTCTCTC 57.312 36.000 0.00 0.00 35.87 3.20
1563 1743 0.541764 GGATTTGGTTGGTGCAGGGA 60.542 55.000 0.00 0.00 0.00 4.20
1794 2026 4.438744 CGGTTCTTCTTCTTTGTGTTGCTT 60.439 41.667 0.00 0.00 0.00 3.91
1840 2078 1.359848 CCATCTTCGAGTTTGACCGG 58.640 55.000 0.00 0.00 0.00 5.28
1940 2182 4.475016 AGGTACCCATTGTGATTCTTAGCT 59.525 41.667 8.74 0.00 0.00 3.32
1941 2183 4.576463 GGTACCCATTGTGATTCTTAGCTG 59.424 45.833 0.00 0.00 0.00 4.24
1942 2184 4.574674 ACCCATTGTGATTCTTAGCTGA 57.425 40.909 0.00 0.00 0.00 4.26
1944 2186 5.513233 ACCCATTGTGATTCTTAGCTGATT 58.487 37.500 0.00 0.00 0.00 2.57
1945 2187 5.591877 ACCCATTGTGATTCTTAGCTGATTC 59.408 40.000 0.00 0.00 0.00 2.52
1946 2188 5.277683 CCCATTGTGATTCTTAGCTGATTCG 60.278 44.000 0.00 0.00 0.00 3.34
1952 2202 6.707608 TGTGATTCTTAGCTGATTCGCATAAT 59.292 34.615 0.00 0.00 34.22 1.28
1954 2204 8.072567 GTGATTCTTAGCTGATTCGCATAATTT 58.927 33.333 0.00 0.00 31.27 1.82
1994 2250 4.201851 GCGTAAACTGACATGAATGCATCT 60.202 41.667 0.00 0.00 30.68 2.90
2212 2468 7.769220 AGCATCAGTCATCTTTTAAATTCTGG 58.231 34.615 0.00 0.00 0.00 3.86
2607 2930 1.575419 TATGAGTAACACCCGGCCTT 58.425 50.000 0.00 0.00 0.00 4.35
3292 3615 9.693739 TGTTATTGATAGGATTAATTGTGGTGT 57.306 29.630 0.00 0.00 0.00 4.16
3402 3734 0.252375 ATTGCAGGCTGGGTGGAAAT 60.252 50.000 17.64 0.00 0.00 2.17
3694 4029 5.871524 CGCAGGTATATTGCATCAGAACTAT 59.128 40.000 11.31 0.00 41.59 2.12
3695 4030 7.035612 CGCAGGTATATTGCATCAGAACTATA 58.964 38.462 11.31 0.00 41.59 1.31
3854 4402 3.028366 GAAACTGCTCCGGCTTCGC 62.028 63.158 0.00 0.00 39.59 4.70
4114 4680 2.955614 GCAAGCAGCAAAACATGAGAT 58.044 42.857 0.00 0.00 44.79 2.75
4203 4773 3.235195 GCGTGGTGCGAGTATTATAGAG 58.765 50.000 0.00 0.00 44.77 2.43
4227 4797 4.883083 TGTAGAACACAGCTCTTAACCAG 58.117 43.478 0.00 0.00 31.89 4.00
4239 4809 4.884164 GCTCTTAACCAGCATTTCCATAGT 59.116 41.667 0.00 0.00 36.82 2.12
4283 4854 8.462811 TCTGCACAAGTAGAGAAGTAAAGATAG 58.537 37.037 0.00 0.00 32.42 2.08
4324 4895 8.882557 TGTATACCACCGTTATAGGATAATGA 57.117 34.615 0.00 0.00 34.73 2.57
4328 4899 5.995897 ACCACCGTTATAGGATAATGAAAGC 59.004 40.000 0.88 0.00 34.73 3.51
4329 4900 5.995282 CCACCGTTATAGGATAATGAAAGCA 59.005 40.000 0.88 0.00 34.73 3.91
4331 4963 7.307989 CCACCGTTATAGGATAATGAAAGCAAG 60.308 40.741 0.88 0.00 34.73 4.01
4348 4980 4.279145 AGCAAGATTTCATGGAGCTGAAT 58.721 39.130 0.00 0.00 35.20 2.57
4393 5053 3.507233 TGCACAATTTGTCAAGGAGATCC 59.493 43.478 0.00 0.00 0.00 3.36
4420 5080 6.726490 TGTGAGGAGTTAGTTTAGTGAGTT 57.274 37.500 0.00 0.00 0.00 3.01
4441 5101 4.130554 TTGGTGGGTGTTGGCGGT 62.131 61.111 0.00 0.00 0.00 5.68
4451 5111 1.081242 GTTGGCGGTCTTGCACATG 60.081 57.895 0.00 0.00 36.28 3.21
4484 5144 2.979813 GCAACGCCTCTTGTAAATGTTG 59.020 45.455 0.00 0.00 38.51 3.33
4492 5152 6.513393 CGCCTCTTGTAAATGTTGACTTCTTT 60.513 38.462 0.00 0.00 0.00 2.52
4497 5157 8.621286 TCTTGTAAATGTTGACTTCTTTCTTCC 58.379 33.333 0.00 0.00 0.00 3.46
4498 5158 7.873719 TGTAAATGTTGACTTCTTTCTTCCA 57.126 32.000 0.00 0.00 0.00 3.53
4499 5159 8.463930 TGTAAATGTTGACTTCTTTCTTCCAT 57.536 30.769 0.00 0.00 0.00 3.41
4500 5160 8.352201 TGTAAATGTTGACTTCTTTCTTCCATG 58.648 33.333 0.00 0.00 0.00 3.66
4501 5161 6.966534 AATGTTGACTTCTTTCTTCCATGT 57.033 33.333 0.00 0.00 0.00 3.21
4502 5162 8.463930 AAATGTTGACTTCTTTCTTCCATGTA 57.536 30.769 0.00 0.00 0.00 2.29
4505 5165 7.703328 TGTTGACTTCTTTCTTCCATGTAAAC 58.297 34.615 0.00 0.00 0.00 2.01
4507 5167 5.468746 TGACTTCTTTCTTCCATGTAAACGG 59.531 40.000 0.00 0.00 0.00 4.44
4508 5168 4.215613 ACTTCTTTCTTCCATGTAAACGGC 59.784 41.667 0.00 0.00 0.00 5.68
4509 5169 4.015872 TCTTTCTTCCATGTAAACGGCT 57.984 40.909 0.00 0.00 0.00 5.52
4510 5170 5.155278 TCTTTCTTCCATGTAAACGGCTA 57.845 39.130 0.00 0.00 0.00 3.93
4512 5172 5.642063 TCTTTCTTCCATGTAAACGGCTAAG 59.358 40.000 0.00 0.00 0.00 2.18
4513 5173 3.267483 TCTTCCATGTAAACGGCTAAGC 58.733 45.455 0.00 0.00 0.00 3.09
4514 5174 3.055385 TCTTCCATGTAAACGGCTAAGCT 60.055 43.478 0.00 0.00 0.00 3.74
4516 5176 3.006940 TCCATGTAAACGGCTAAGCTTG 58.993 45.455 9.86 0.01 0.00 4.01
4517 5177 3.006940 CCATGTAAACGGCTAAGCTTGA 58.993 45.455 9.86 0.00 0.00 3.02
4518 5178 3.438781 CCATGTAAACGGCTAAGCTTGAA 59.561 43.478 9.86 0.00 0.00 2.69
4519 5179 4.083003 CCATGTAAACGGCTAAGCTTGAAA 60.083 41.667 9.86 0.00 0.00 2.69
4520 5180 5.457140 CATGTAAACGGCTAAGCTTGAAAA 58.543 37.500 9.86 0.00 0.00 2.29
4522 5182 6.804770 TGTAAACGGCTAAGCTTGAAAATA 57.195 33.333 9.86 0.00 0.00 1.40
4523 5183 7.204496 TGTAAACGGCTAAGCTTGAAAATAA 57.796 32.000 9.86 0.00 0.00 1.40
4525 5185 8.136165 TGTAAACGGCTAAGCTTGAAAATAAAA 58.864 29.630 9.86 0.00 0.00 1.52
4526 5186 7.637709 AAACGGCTAAGCTTGAAAATAAAAG 57.362 32.000 9.86 0.00 0.00 2.27
4527 5187 6.327279 ACGGCTAAGCTTGAAAATAAAAGT 57.673 33.333 9.86 0.00 0.00 2.66
4529 5189 7.303261 ACGGCTAAGCTTGAAAATAAAAGTAC 58.697 34.615 9.86 0.00 0.00 2.73
4531 5191 7.968405 CGGCTAAGCTTGAAAATAAAAGTACAT 59.032 33.333 9.86 0.00 0.00 2.29
4532 5192 9.076596 GGCTAAGCTTGAAAATAAAAGTACATG 57.923 33.333 9.86 0.00 0.00 3.21
4533 5193 8.587111 GCTAAGCTTGAAAATAAAAGTACATGC 58.413 33.333 9.86 0.00 0.00 4.06
4536 5196 7.661040 AGCTTGAAAATAAAAGTACATGCAGT 58.339 30.769 0.00 0.00 33.21 4.40
4537 5197 8.792633 AGCTTGAAAATAAAAGTACATGCAGTA 58.207 29.630 0.00 0.00 33.21 2.74
4542 5202 8.588290 AAAATAAAAGTACATGCAGTATCCCA 57.412 30.769 0.00 0.00 34.67 4.37
4545 5205 4.568072 AAGTACATGCAGTATCCCACAA 57.432 40.909 0.00 0.00 34.67 3.33
4546 5206 4.568072 AGTACATGCAGTATCCCACAAA 57.432 40.909 0.00 0.00 34.67 2.83
4547 5207 4.917385 AGTACATGCAGTATCCCACAAAA 58.083 39.130 0.00 0.00 34.67 2.44
4549 5209 4.519540 ACATGCAGTATCCCACAAAAAC 57.480 40.909 0.00 0.00 0.00 2.43
4550 5210 4.151883 ACATGCAGTATCCCACAAAAACT 58.848 39.130 0.00 0.00 0.00 2.66
4551 5211 4.588528 ACATGCAGTATCCCACAAAAACTT 59.411 37.500 0.00 0.00 0.00 2.66
4552 5212 5.070313 ACATGCAGTATCCCACAAAAACTTT 59.930 36.000 0.00 0.00 0.00 2.66
4559 5225 9.020731 CAGTATCCCACAAAAACTTTAATAGGT 57.979 33.333 0.00 0.00 0.00 3.08
4592 5258 4.282195 GGCTAGTTATGGCTGACTGATACT 59.718 45.833 0.00 0.00 32.55 2.12
4593 5259 5.465935 GCTAGTTATGGCTGACTGATACTC 58.534 45.833 0.00 0.00 0.00 2.59
4594 5260 5.010112 GCTAGTTATGGCTGACTGATACTCA 59.990 44.000 0.00 0.00 0.00 3.41
4597 5263 6.520272 AGTTATGGCTGACTGATACTCATTC 58.480 40.000 0.00 0.00 0.00 2.67
4598 5264 6.326064 AGTTATGGCTGACTGATACTCATTCT 59.674 38.462 0.00 0.00 28.78 2.40
4599 5265 4.397481 TGGCTGACTGATACTCATTCTG 57.603 45.455 0.00 0.00 31.44 3.02
4600 5266 3.771479 TGGCTGACTGATACTCATTCTGT 59.229 43.478 0.00 0.00 31.11 3.41
4602 5268 5.422012 TGGCTGACTGATACTCATTCTGTAA 59.578 40.000 0.00 0.00 31.11 2.41
4603 5269 6.070824 TGGCTGACTGATACTCATTCTGTAAA 60.071 38.462 0.00 0.00 31.11 2.01
4604 5270 6.478344 GGCTGACTGATACTCATTCTGTAAAG 59.522 42.308 0.00 0.00 31.11 1.85
4605 5271 7.261325 GCTGACTGATACTCATTCTGTAAAGA 58.739 38.462 4.26 0.00 31.11 2.52
4606 5272 7.761704 GCTGACTGATACTCATTCTGTAAAGAA 59.238 37.037 0.00 0.00 31.11 2.52
4608 5274 8.807118 TGACTGATACTCATTCTGTAAAGAACT 58.193 33.333 0.00 0.00 28.78 3.01
4621 5287 9.622004 TTCTGTAAAGAACTAGTGATCTAAACG 57.378 33.333 0.00 0.00 0.00 3.60
4623 5289 9.790389 CTGTAAAGAACTAGTGATCTAAACGAT 57.210 33.333 0.00 0.00 34.25 3.73
4644 5310 8.798748 ACGATCTTATATCTTTTTACAGACGG 57.201 34.615 0.00 0.00 0.00 4.79
4645 5311 8.627403 ACGATCTTATATCTTTTTACAGACGGA 58.373 33.333 0.00 0.00 0.00 4.69
4646 5312 9.119329 CGATCTTATATCTTTTTACAGACGGAG 57.881 37.037 0.00 0.00 0.00 4.63
4663 5329 5.382618 ACGGAGTACAAATTTACGACTCT 57.617 39.130 18.45 5.07 41.94 3.24
4664 5330 5.776744 ACGGAGTACAAATTTACGACTCTT 58.223 37.500 18.45 9.08 41.94 2.85
4665 5331 5.632347 ACGGAGTACAAATTTACGACTCTTG 59.368 40.000 18.45 15.15 41.94 3.02
4686 5355 1.757699 GTCCACGGATAAGAGGAGCTT 59.242 52.381 0.00 0.00 40.68 3.74
4688 5357 1.757118 CCACGGATAAGAGGAGCTTGA 59.243 52.381 0.00 0.00 37.42 3.02
4725 5394 3.326006 TCCTGCAATCATCTCCCTCATAC 59.674 47.826 0.00 0.00 0.00 2.39
4731 5400 5.703130 GCAATCATCTCCCTCATACCTAAAC 59.297 44.000 0.00 0.00 0.00 2.01
4734 5403 5.538877 TCATCTCCCTCATACCTAAACCTT 58.461 41.667 0.00 0.00 0.00 3.50
4741 5410 5.828328 CCCTCATACCTAAACCTTCAAATCC 59.172 44.000 0.00 0.00 0.00 3.01
4776 5445 8.183536 TCATGCAATGTAGATTAACACAACATC 58.816 33.333 0.00 0.00 46.80 3.06
4777 5446 7.446001 TGCAATGTAGATTAACACAACATCA 57.554 32.000 0.00 0.00 30.71 3.07
4792 5461 5.173673 CACAACATCAACAAACACATAGCAC 59.826 40.000 0.00 0.00 0.00 4.40
4793 5462 5.067674 ACAACATCAACAAACACATAGCACT 59.932 36.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.643978 GCAATGCCGCCGAGCTAG 61.644 66.667 0.00 0.00 0.00 3.42
6 7 4.465480 TGCAATGCCGCCGAGCTA 62.465 61.111 1.53 0.00 0.00 3.32
9 10 4.170062 CAGTGCAATGCCGCCGAG 62.170 66.667 0.00 0.00 0.00 4.63
16 17 2.260434 CACCCAGCAGTGCAATGC 59.740 61.111 30.52 30.52 46.88 3.56
27 28 4.802051 CCATGGACCCGCACCCAG 62.802 72.222 5.56 0.00 35.67 4.45
45 46 4.314440 TCTGTCCACCGTGGCAGC 62.314 66.667 25.37 14.67 39.70 5.25
46 47 2.047844 CTCTGTCCACCGTGGCAG 60.048 66.667 24.71 24.71 40.56 4.85
47 48 3.625897 CCTCTGTCCACCGTGGCA 61.626 66.667 13.19 12.68 37.47 4.92
48 49 3.626924 ACCTCTGTCCACCGTGGC 61.627 66.667 13.19 8.69 37.47 5.01
49 50 2.343758 CACCTCTGTCCACCGTGG 59.656 66.667 11.73 11.73 39.43 4.94
50 51 2.357517 GCACCTCTGTCCACCGTG 60.358 66.667 0.00 0.00 0.00 4.94
51 52 2.439960 TTGCACCTCTGTCCACCGT 61.440 57.895 0.00 0.00 0.00 4.83
52 53 1.961277 GTTGCACCTCTGTCCACCG 60.961 63.158 0.00 0.00 0.00 4.94
53 54 1.961277 CGTTGCACCTCTGTCCACC 60.961 63.158 0.00 0.00 0.00 4.61
54 55 2.607892 GCGTTGCACCTCTGTCCAC 61.608 63.158 0.00 0.00 0.00 4.02
55 56 2.280797 GCGTTGCACCTCTGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
56 57 3.050275 GGCGTTGCACCTCTGTCC 61.050 66.667 0.00 0.00 0.00 4.02
57 58 3.414700 CGGCGTTGCACCTCTGTC 61.415 66.667 0.00 0.00 0.00 3.51
80 81 2.278857 CTACGGTGCAGCGCCTAG 60.279 66.667 35.78 25.87 0.00 3.02
81 82 3.833645 CCTACGGTGCAGCGCCTA 61.834 66.667 35.78 21.25 0.00 3.93
112 113 1.001378 CTTTTGTGTAGTGCCTGCCAC 60.001 52.381 0.00 0.00 45.01 5.01
113 114 1.317613 CTTTTGTGTAGTGCCTGCCA 58.682 50.000 0.00 0.00 0.00 4.92
114 115 0.598065 CCTTTTGTGTAGTGCCTGCC 59.402 55.000 0.00 0.00 0.00 4.85
115 116 0.598065 CCCTTTTGTGTAGTGCCTGC 59.402 55.000 0.00 0.00 0.00 4.85
116 117 1.880027 GACCCTTTTGTGTAGTGCCTG 59.120 52.381 0.00 0.00 0.00 4.85
117 118 1.493022 TGACCCTTTTGTGTAGTGCCT 59.507 47.619 0.00 0.00 0.00 4.75
118 119 1.880027 CTGACCCTTTTGTGTAGTGCC 59.120 52.381 0.00 0.00 0.00 5.01
119 120 1.880027 CCTGACCCTTTTGTGTAGTGC 59.120 52.381 0.00 0.00 0.00 4.40
120 121 2.504367 CCCTGACCCTTTTGTGTAGTG 58.496 52.381 0.00 0.00 0.00 2.74
121 122 1.423921 CCCCTGACCCTTTTGTGTAGT 59.576 52.381 0.00 0.00 0.00 2.73
122 123 1.423921 ACCCCTGACCCTTTTGTGTAG 59.576 52.381 0.00 0.00 0.00 2.74
123 124 1.144093 CACCCCTGACCCTTTTGTGTA 59.856 52.381 0.00 0.00 0.00 2.90
124 125 0.106217 CACCCCTGACCCTTTTGTGT 60.106 55.000 0.00 0.00 0.00 3.72
125 126 0.106217 ACACCCCTGACCCTTTTGTG 60.106 55.000 0.00 0.00 0.00 3.33
126 127 0.106217 CACACCCCTGACCCTTTTGT 60.106 55.000 0.00 0.00 0.00 2.83
127 128 0.184933 TCACACCCCTGACCCTTTTG 59.815 55.000 0.00 0.00 0.00 2.44
128 129 0.930726 TTCACACCCCTGACCCTTTT 59.069 50.000 0.00 0.00 0.00 2.27
129 130 0.930726 TTTCACACCCCTGACCCTTT 59.069 50.000 0.00 0.00 0.00 3.11
130 131 1.158007 ATTTCACACCCCTGACCCTT 58.842 50.000 0.00 0.00 0.00 3.95
131 132 1.916181 CTATTTCACACCCCTGACCCT 59.084 52.381 0.00 0.00 0.00 4.34
132 133 1.633945 ACTATTTCACACCCCTGACCC 59.366 52.381 0.00 0.00 0.00 4.46
133 134 3.434940 AACTATTTCACACCCCTGACC 57.565 47.619 0.00 0.00 0.00 4.02
134 135 3.435671 CGAAACTATTTCACACCCCTGAC 59.564 47.826 2.50 0.00 39.63 3.51
135 136 3.670625 CGAAACTATTTCACACCCCTGA 58.329 45.455 2.50 0.00 39.63 3.86
136 137 2.161609 GCGAAACTATTTCACACCCCTG 59.838 50.000 2.50 0.00 39.63 4.45
137 138 2.224670 TGCGAAACTATTTCACACCCCT 60.225 45.455 2.50 0.00 39.63 4.79
138 139 2.095415 GTGCGAAACTATTTCACACCCC 60.095 50.000 10.09 0.00 43.40 4.95
139 140 3.197434 GTGCGAAACTATTTCACACCC 57.803 47.619 10.09 0.00 43.40 4.61
141 142 2.550606 TGGGTGCGAAACTATTTCACAC 59.449 45.455 12.03 12.03 46.56 3.82
142 143 2.811431 CTGGGTGCGAAACTATTTCACA 59.189 45.455 2.50 0.00 39.63 3.58
143 144 2.812011 ACTGGGTGCGAAACTATTTCAC 59.188 45.455 2.50 0.00 39.63 3.18
144 145 3.134574 ACTGGGTGCGAAACTATTTCA 57.865 42.857 2.50 0.00 39.63 2.69
145 146 3.500680 TGAACTGGGTGCGAAACTATTTC 59.499 43.478 0.00 0.00 36.32 2.17
146 147 3.482436 TGAACTGGGTGCGAAACTATTT 58.518 40.909 0.00 0.00 0.00 1.40
147 148 3.134574 TGAACTGGGTGCGAAACTATT 57.865 42.857 0.00 0.00 0.00 1.73
148 149 2.851263 TGAACTGGGTGCGAAACTAT 57.149 45.000 0.00 0.00 0.00 2.12
149 150 2.851263 ATGAACTGGGTGCGAAACTA 57.149 45.000 0.00 0.00 0.00 2.24
150 151 1.981256 AATGAACTGGGTGCGAAACT 58.019 45.000 0.00 0.00 0.00 2.66
151 152 2.793278 AAATGAACTGGGTGCGAAAC 57.207 45.000 0.00 0.00 0.00 2.78
152 153 2.428890 ACAAAATGAACTGGGTGCGAAA 59.571 40.909 0.00 0.00 0.00 3.46
153 154 2.028130 ACAAAATGAACTGGGTGCGAA 58.972 42.857 0.00 0.00 0.00 4.70
154 155 1.336440 CACAAAATGAACTGGGTGCGA 59.664 47.619 0.00 0.00 0.00 5.10
155 156 1.336440 TCACAAAATGAACTGGGTGCG 59.664 47.619 0.00 0.00 33.02 5.34
156 157 3.451141 TTCACAAAATGAACTGGGTGC 57.549 42.857 0.00 0.00 42.62 5.01
165 166 9.452065 TCGAAACGAAATAAATTCACAAAATGA 57.548 25.926 0.00 0.00 37.96 2.57
166 167 9.712410 CTCGAAACGAAATAAATTCACAAAATG 57.288 29.630 0.00 0.00 37.96 2.32
167 168 9.458374 ACTCGAAACGAAATAAATTCACAAAAT 57.542 25.926 0.00 0.00 37.96 1.82
168 169 8.844441 ACTCGAAACGAAATAAATTCACAAAA 57.156 26.923 0.00 0.00 37.96 2.44
169 170 8.844441 AACTCGAAACGAAATAAATTCACAAA 57.156 26.923 0.00 0.00 37.96 2.83
170 171 8.123575 TGAACTCGAAACGAAATAAATTCACAA 58.876 29.630 0.00 0.00 37.96 3.33
171 172 7.631822 TGAACTCGAAACGAAATAAATTCACA 58.368 30.769 0.00 0.00 37.96 3.58
172 173 8.483743 TTGAACTCGAAACGAAATAAATTCAC 57.516 30.769 0.00 0.00 37.96 3.18
173 174 9.504710 TTTTGAACTCGAAACGAAATAAATTCA 57.495 25.926 0.00 0.00 37.96 2.57
177 178 9.291664 ACAATTTTGAACTCGAAACGAAATAAA 57.708 25.926 9.96 0.00 34.74 1.40
178 179 8.844441 ACAATTTTGAACTCGAAACGAAATAA 57.156 26.923 9.96 0.00 34.74 1.40
179 180 8.123575 TGACAATTTTGAACTCGAAACGAAATA 58.876 29.630 9.96 0.00 34.74 1.40
180 181 6.970043 TGACAATTTTGAACTCGAAACGAAAT 59.030 30.769 0.00 0.00 34.74 2.17
181 182 6.315551 TGACAATTTTGAACTCGAAACGAAA 58.684 32.000 0.00 0.00 34.74 3.46
182 183 5.870444 TGACAATTTTGAACTCGAAACGAA 58.130 33.333 0.00 0.00 34.74 3.85
183 184 5.472320 TGACAATTTTGAACTCGAAACGA 57.528 34.783 0.00 0.00 32.52 3.85
184 185 6.547493 TTTGACAATTTTGAACTCGAAACG 57.453 33.333 0.00 0.00 32.52 3.60
185 186 9.198065 CAAATTTGACAATTTTGAACTCGAAAC 57.802 29.630 22.40 0.00 40.09 2.78
186 187 7.902403 GCAAATTTGACAATTTTGAACTCGAAA 59.098 29.630 27.56 0.00 40.09 3.46
187 188 7.277539 AGCAAATTTGACAATTTTGAACTCGAA 59.722 29.630 27.56 0.00 40.09 3.71
188 189 6.756074 AGCAAATTTGACAATTTTGAACTCGA 59.244 30.769 27.56 0.00 40.09 4.04
189 190 6.936374 AGCAAATTTGACAATTTTGAACTCG 58.064 32.000 27.56 10.13 40.09 4.18
218 219 2.034558 CGGATGAGTGCACTTGGTTTTT 59.965 45.455 22.65 0.00 0.00 1.94
219 220 1.608590 CGGATGAGTGCACTTGGTTTT 59.391 47.619 22.65 0.00 0.00 2.43
220 221 1.202758 TCGGATGAGTGCACTTGGTTT 60.203 47.619 22.65 4.23 0.00 3.27
221 222 0.396435 TCGGATGAGTGCACTTGGTT 59.604 50.000 22.65 6.15 0.00 3.67
222 223 0.036952 CTCGGATGAGTGCACTTGGT 60.037 55.000 22.65 10.07 37.46 3.67
223 224 0.247460 TCTCGGATGAGTGCACTTGG 59.753 55.000 22.65 8.84 43.09 3.61
224 225 1.354040 GTCTCGGATGAGTGCACTTG 58.646 55.000 22.65 9.04 43.09 3.16
225 226 0.247736 GGTCTCGGATGAGTGCACTT 59.752 55.000 22.65 5.62 43.09 3.16
226 227 1.893786 GGTCTCGGATGAGTGCACT 59.106 57.895 21.88 21.88 43.09 4.40
227 228 1.517257 CGGTCTCGGATGAGTGCAC 60.517 63.158 9.40 9.40 43.09 4.57
228 229 2.885113 CGGTCTCGGATGAGTGCA 59.115 61.111 0.00 0.00 43.09 4.57
238 239 2.434359 GGTTCTTGCCCGGTCTCG 60.434 66.667 0.00 0.00 0.00 4.04
239 240 2.434359 CGGTTCTTGCCCGGTCTC 60.434 66.667 0.00 0.00 41.78 3.36
240 241 4.699522 GCGGTTCTTGCCCGGTCT 62.700 66.667 0.00 0.00 45.57 3.85
248 249 3.058160 CAGGGCCTGCGGTTCTTG 61.058 66.667 22.68 0.00 0.00 3.02
271 272 0.465097 CCCGGATGATTGAAGCTGCT 60.465 55.000 0.73 0.00 0.00 4.24
273 274 0.181114 TCCCCGGATGATTGAAGCTG 59.819 55.000 0.73 0.00 0.00 4.24
274 275 0.181350 GTCCCCGGATGATTGAAGCT 59.819 55.000 0.73 0.00 0.00 3.74
312 313 4.704833 GGCTGCGGCTCTTCACCA 62.705 66.667 18.85 0.00 38.73 4.17
334 335 0.855349 CATCTGCGCGAATACAGACC 59.145 55.000 12.10 0.00 45.19 3.85
336 337 1.405463 ACTCATCTGCGCGAATACAGA 59.595 47.619 12.10 13.95 46.34 3.41
337 338 1.845266 ACTCATCTGCGCGAATACAG 58.155 50.000 12.10 7.86 35.15 2.74
338 339 2.159240 AGAACTCATCTGCGCGAATACA 60.159 45.455 12.10 0.00 36.88 2.29
341 342 1.134995 TGAGAACTCATCTGCGCGAAT 60.135 47.619 12.10 0.00 38.96 3.34
342 343 0.243636 TGAGAACTCATCTGCGCGAA 59.756 50.000 12.10 0.00 38.96 4.70
344 345 2.969157 ATGAGAACTCATCTGCGCG 58.031 52.632 10.99 0.00 46.57 6.86
352 353 6.881065 CCTAAAGAATCACCAATGAGAACTCA 59.119 38.462 6.98 6.98 44.59 3.41
353 354 6.881602 ACCTAAAGAATCACCAATGAGAACTC 59.118 38.462 0.00 0.00 38.57 3.01
354 355 6.784031 ACCTAAAGAATCACCAATGAGAACT 58.216 36.000 0.00 0.00 38.57 3.01
355 356 6.094186 GGACCTAAAGAATCACCAATGAGAAC 59.906 42.308 0.00 0.00 38.57 3.01
356 357 6.180472 GGACCTAAAGAATCACCAATGAGAA 58.820 40.000 0.00 0.00 38.57 2.87
357 358 5.250543 TGGACCTAAAGAATCACCAATGAGA 59.749 40.000 0.00 0.00 38.57 3.27
358 359 5.500234 TGGACCTAAAGAATCACCAATGAG 58.500 41.667 0.00 0.00 38.57 2.90
362 363 6.381498 TGTATGGACCTAAAGAATCACCAA 57.619 37.500 0.00 0.00 0.00 3.67
363 364 6.381498 TTGTATGGACCTAAAGAATCACCA 57.619 37.500 0.00 0.00 0.00 4.17
364 365 8.974060 TTATTGTATGGACCTAAAGAATCACC 57.026 34.615 0.00 0.00 0.00 4.02
366 367 9.627123 CCTTTATTGTATGGACCTAAAGAATCA 57.373 33.333 9.25 0.00 34.64 2.57
370 410 6.053005 CGCCTTTATTGTATGGACCTAAAGA 58.947 40.000 9.25 0.00 34.64 2.52
374 414 5.617528 TTCGCCTTTATTGTATGGACCTA 57.382 39.130 0.00 0.00 0.00 3.08
375 415 4.497291 TTCGCCTTTATTGTATGGACCT 57.503 40.909 0.00 0.00 0.00 3.85
376 416 5.106078 TGTTTTCGCCTTTATTGTATGGACC 60.106 40.000 0.00 0.00 0.00 4.46
382 422 6.655848 ACCTACATGTTTTCGCCTTTATTGTA 59.344 34.615 2.30 0.00 0.00 2.41
387 427 6.394025 AAAACCTACATGTTTTCGCCTTTA 57.606 33.333 2.30 0.00 43.09 1.85
396 436 5.011635 GGTGGAATGGAAAACCTACATGTTT 59.988 40.000 2.30 0.00 40.05 2.83
405 445 2.302587 TCCAGGTGGAATGGAAAACC 57.697 50.000 0.00 0.00 43.87 3.27
420 462 3.983344 CGCCTCAAAAACTCATTTTCCAG 59.017 43.478 0.00 0.00 39.20 3.86
429 471 1.333619 TGTTCTGCGCCTCAAAAACTC 59.666 47.619 4.18 0.00 0.00 3.01
435 477 1.221466 CGTTCTGTTCTGCGCCTCAA 61.221 55.000 4.18 0.00 0.00 3.02
573 618 0.390472 GACCAAACCTCTCTGCCTCG 60.390 60.000 0.00 0.00 0.00 4.63
599 644 4.927782 TGGTGGTGGTGCGTGCTC 62.928 66.667 0.00 0.00 0.00 4.26
610 655 1.223187 GTCGACGATTTTGTGGTGGT 58.777 50.000 0.00 0.00 0.00 4.16
681 726 2.433318 GTGTGCTCGCCTGAGGTC 60.433 66.667 0.00 0.00 42.79 3.85
896 945 1.078567 GCTCTGGCTCTGTCCCTTG 60.079 63.158 0.00 0.00 35.22 3.61
897 946 2.297129 GGCTCTGGCTCTGTCCCTT 61.297 63.158 0.00 0.00 38.73 3.95
898 947 2.686835 GGCTCTGGCTCTGTCCCT 60.687 66.667 0.00 0.00 38.73 4.20
899 948 2.596851 TTGGCTCTGGCTCTGTCCC 61.597 63.158 0.00 0.00 38.73 4.46
900 949 1.376553 GTTGGCTCTGGCTCTGTCC 60.377 63.158 0.00 0.00 38.73 4.02
901 950 1.376553 GGTTGGCTCTGGCTCTGTC 60.377 63.158 0.00 0.00 38.73 3.51
902 951 2.121992 CTGGTTGGCTCTGGCTCTGT 62.122 60.000 0.00 0.00 38.73 3.41
1428 1513 5.484715 AGATGCAATTTTGGTTGGAATCAG 58.515 37.500 0.00 0.00 33.10 2.90
1477 1567 3.190744 CGAACGAGATTATGGCTAGGCTA 59.809 47.826 18.18 4.39 0.00 3.93
1478 1568 2.029828 CGAACGAGATTATGGCTAGGCT 60.030 50.000 18.18 5.72 0.00 4.58
1479 1569 2.030185 TCGAACGAGATTATGGCTAGGC 60.030 50.000 9.85 9.85 0.00 3.93
1480 1570 3.917329 TCGAACGAGATTATGGCTAGG 57.083 47.619 0.00 0.00 0.00 3.02
1496 1668 0.390603 ATCACGAACGCCCAATCGAA 60.391 50.000 1.84 0.00 41.43 3.71
1506 1678 4.119862 AGGTTAATCATCCATCACGAACG 58.880 43.478 0.00 0.00 0.00 3.95
1513 1685 8.286191 AGAGAAACAAAGGTTAATCATCCATC 57.714 34.615 0.00 0.00 35.82 3.51
1539 1715 1.271934 TGCACCAACCAAATCCAATCG 59.728 47.619 0.00 0.00 0.00 3.34
1563 1743 3.434739 GCAGGATCTCAAAGATGGTCCAT 60.435 47.826 3.26 3.26 34.53 3.41
1641 1821 4.591929 TGATCATCATCTTGGCAAGAACA 58.408 39.130 31.57 21.28 41.63 3.18
1794 2026 3.305813 CCCTTCGTAACACTGTAAGCAGA 60.306 47.826 1.30 0.00 45.28 4.26
1840 2078 2.735762 GCCAGACCTGAACATACGAGTC 60.736 54.545 0.00 0.00 0.00 3.36
1994 2250 3.244078 ACAACGACTGATGCAAGAAGGTA 60.244 43.478 0.00 0.00 0.00 3.08
2212 2468 2.859806 GCACAACCACAGAAGCACAATC 60.860 50.000 0.00 0.00 0.00 2.67
2330 2608 9.549509 GCACAATCTCAACGTTGTATTAATTAA 57.450 29.630 26.47 0.00 36.48 1.40
2345 2623 3.655486 CAAAATGCCAGCACAATCTCAA 58.345 40.909 0.00 0.00 0.00 3.02
2392 2700 1.869754 CGTCTGCAGTTGCTAGTGTGT 60.870 52.381 14.67 0.00 42.66 3.72
2524 2847 7.980742 AAATCGCCCTTTATCGAAAAATAAC 57.019 32.000 0.00 0.00 38.28 1.89
3402 3734 0.829333 AAGTGTGCAAATGGCCACAA 59.171 45.000 8.16 0.00 42.54 3.33
3695 4030 9.965902 AACTGATTTCTTCATATGTTTAGGAGT 57.034 29.630 1.90 0.00 32.72 3.85
4050 4609 4.582869 TGCATAGTTTCATCAAGCACTCT 58.417 39.130 0.00 0.00 0.00 3.24
4092 4658 0.751452 TCATGTTTTGCTGCTTGCCA 59.249 45.000 0.00 0.00 42.00 4.92
4114 4680 5.316167 ACAGATCTGCCAATGTTTAAGACA 58.684 37.500 22.83 0.00 43.71 3.41
4323 4894 4.157289 TCAGCTCCATGAAATCTTGCTTTC 59.843 41.667 0.00 0.00 36.00 2.62
4324 4895 4.084287 TCAGCTCCATGAAATCTTGCTTT 58.916 39.130 0.00 0.00 0.00 3.51
4326 4897 3.361281 TCAGCTCCATGAAATCTTGCT 57.639 42.857 0.00 0.00 0.00 3.91
4327 4898 4.650754 ATTCAGCTCCATGAAATCTTGC 57.349 40.909 0.00 0.00 42.21 4.01
4328 4899 7.861372 GTGAATATTCAGCTCCATGAAATCTTG 59.139 37.037 18.47 0.00 42.21 3.02
4329 4900 7.558807 TGTGAATATTCAGCTCCATGAAATCTT 59.441 33.333 18.47 0.00 42.21 2.40
4331 4963 7.268199 TGTGAATATTCAGCTCCATGAAATC 57.732 36.000 18.47 3.04 42.21 2.17
4340 4972 4.952262 TGTGCTTGTGAATATTCAGCTC 57.048 40.909 18.47 17.56 37.98 4.09
4348 4980 7.083858 GCAGTTTAATCTTGTGCTTGTGAATA 58.916 34.615 0.00 0.00 0.00 1.75
4393 5053 7.711339 ACTCACTAAACTAACTCCTCACAAAAG 59.289 37.037 0.00 0.00 0.00 2.27
4404 5064 6.315393 CACCAACACAACTCACTAAACTAACT 59.685 38.462 0.00 0.00 0.00 2.24
4420 5080 2.055042 GCCAACACCCACCAACACA 61.055 57.895 0.00 0.00 0.00 3.72
4459 5119 2.766970 TTACAAGAGGCGTTGCAAAC 57.233 45.000 0.00 0.00 45.31 2.93
4460 5120 3.067461 ACATTTACAAGAGGCGTTGCAAA 59.933 39.130 0.00 3.64 29.40 3.68
4461 5121 2.621055 ACATTTACAAGAGGCGTTGCAA 59.379 40.909 0.00 0.00 0.00 4.08
4462 5122 2.226330 ACATTTACAAGAGGCGTTGCA 58.774 42.857 2.92 0.00 0.00 4.08
4463 5123 2.979813 CAACATTTACAAGAGGCGTTGC 59.020 45.455 2.92 0.00 0.00 4.17
4464 5124 4.024048 AGTCAACATTTACAAGAGGCGTTG 60.024 41.667 0.00 0.00 34.90 4.10
4468 5128 5.948992 AGAAGTCAACATTTACAAGAGGC 57.051 39.130 0.00 0.00 0.00 4.70
4484 5144 5.617087 GCCGTTTACATGGAAGAAAGAAGTC 60.617 44.000 0.00 0.00 0.00 3.01
4492 5152 3.055385 AGCTTAGCCGTTTACATGGAAGA 60.055 43.478 0.00 0.00 0.00 2.87
4497 5157 4.678509 TTCAAGCTTAGCCGTTTACATG 57.321 40.909 0.00 0.00 0.00 3.21
4498 5158 5.699097 TTTTCAAGCTTAGCCGTTTACAT 57.301 34.783 0.00 0.00 0.00 2.29
4499 5159 5.699097 ATTTTCAAGCTTAGCCGTTTACA 57.301 34.783 0.00 0.00 0.00 2.41
4500 5160 8.510132 TTTTATTTTCAAGCTTAGCCGTTTAC 57.490 30.769 0.00 0.00 0.00 2.01
4501 5161 8.354426 ACTTTTATTTTCAAGCTTAGCCGTTTA 58.646 29.630 0.00 0.00 0.00 2.01
4502 5162 7.207383 ACTTTTATTTTCAAGCTTAGCCGTTT 58.793 30.769 0.00 0.00 0.00 3.60
4505 5165 7.302524 TGTACTTTTATTTTCAAGCTTAGCCG 58.697 34.615 0.00 0.00 0.00 5.52
4507 5167 8.587111 GCATGTACTTTTATTTTCAAGCTTAGC 58.413 33.333 0.00 0.00 0.00 3.09
4508 5168 9.624697 TGCATGTACTTTTATTTTCAAGCTTAG 57.375 29.630 0.00 0.00 0.00 2.18
4509 5169 9.624697 CTGCATGTACTTTTATTTTCAAGCTTA 57.375 29.630 0.00 0.00 0.00 3.09
4510 5170 8.143835 ACTGCATGTACTTTTATTTTCAAGCTT 58.856 29.630 0.00 0.00 0.00 3.74
4512 5172 7.873739 ACTGCATGTACTTTTATTTTCAAGC 57.126 32.000 0.00 0.00 0.00 4.01
4516 5176 8.682710 TGGGATACTGCATGTACTTTTATTTTC 58.317 33.333 0.00 0.00 33.45 2.29
4517 5177 8.466798 GTGGGATACTGCATGTACTTTTATTTT 58.533 33.333 0.00 0.00 33.45 1.82
4518 5178 7.613801 TGTGGGATACTGCATGTACTTTTATTT 59.386 33.333 0.00 0.00 33.45 1.40
4519 5179 7.116075 TGTGGGATACTGCATGTACTTTTATT 58.884 34.615 0.00 0.00 33.45 1.40
4520 5180 6.658849 TGTGGGATACTGCATGTACTTTTAT 58.341 36.000 0.00 0.00 33.45 1.40
4522 5182 4.917385 TGTGGGATACTGCATGTACTTTT 58.083 39.130 0.00 0.00 33.45 2.27
4523 5183 4.568072 TGTGGGATACTGCATGTACTTT 57.432 40.909 0.00 0.00 33.45 2.66
4525 5185 4.568072 TTTGTGGGATACTGCATGTACT 57.432 40.909 0.00 0.00 33.45 2.73
4526 5186 5.183140 AGTTTTTGTGGGATACTGCATGTAC 59.817 40.000 0.00 0.00 33.45 2.90
4527 5187 5.321102 AGTTTTTGTGGGATACTGCATGTA 58.679 37.500 0.00 0.00 35.37 2.29
4529 5189 4.789012 AGTTTTTGTGGGATACTGCATG 57.211 40.909 0.00 0.00 0.00 4.06
4531 5191 6.716934 TTAAAGTTTTTGTGGGATACTGCA 57.283 33.333 0.00 0.00 0.00 4.41
4532 5192 7.973944 CCTATTAAAGTTTTTGTGGGATACTGC 59.026 37.037 0.00 0.00 0.00 4.40
4533 5193 9.020731 ACCTATTAAAGTTTTTGTGGGATACTG 57.979 33.333 0.00 0.00 0.00 2.74
4536 5196 8.943594 ACACCTATTAAAGTTTTTGTGGGATA 57.056 30.769 0.00 0.00 0.00 2.59
4537 5197 7.849322 ACACCTATTAAAGTTTTTGTGGGAT 57.151 32.000 0.00 0.00 0.00 3.85
4539 5199 7.231925 AGGTACACCTATTAAAGTTTTTGTGGG 59.768 37.037 0.00 0.00 46.48 4.61
4540 5200 8.173542 AGGTACACCTATTAAAGTTTTTGTGG 57.826 34.615 0.00 0.00 46.48 4.17
4559 5225 3.640029 GCCATAACTAGCCTGTAGGTACA 59.360 47.826 0.00 0.00 37.57 2.90
4568 5234 2.752030 TCAGTCAGCCATAACTAGCCT 58.248 47.619 0.00 0.00 0.00 4.58
4597 5263 9.790389 ATCGTTTAGATCACTAGTTCTTTACAG 57.210 33.333 2.47 0.90 33.45 2.74
4618 5284 9.245962 CCGTCTGTAAAAAGATATAAGATCGTT 57.754 33.333 0.00 0.00 0.00 3.85
4619 5285 8.627403 TCCGTCTGTAAAAAGATATAAGATCGT 58.373 33.333 0.00 0.00 0.00 3.73
4621 5287 9.968870 ACTCCGTCTGTAAAAAGATATAAGATC 57.031 33.333 0.00 0.00 0.00 2.75
4627 5293 9.886132 ATTTGTACTCCGTCTGTAAAAAGATAT 57.114 29.630 0.00 0.00 32.63 1.63
4629 5295 8.617290 AATTTGTACTCCGTCTGTAAAAAGAT 57.383 30.769 0.00 0.00 32.63 2.40
4630 5296 8.441312 AAATTTGTACTCCGTCTGTAAAAAGA 57.559 30.769 0.00 0.00 32.63 2.52
4631 5297 9.590088 GTAAATTTGTACTCCGTCTGTAAAAAG 57.410 33.333 0.00 0.00 32.63 2.27
4632 5298 8.274939 CGTAAATTTGTACTCCGTCTGTAAAAA 58.725 33.333 0.00 0.00 33.35 1.94
4633 5299 7.651304 TCGTAAATTTGTACTCCGTCTGTAAAA 59.349 33.333 0.00 0.00 0.00 1.52
4634 5300 7.114811 GTCGTAAATTTGTACTCCGTCTGTAAA 59.885 37.037 0.00 0.00 0.00 2.01
4635 5301 6.582295 GTCGTAAATTTGTACTCCGTCTGTAA 59.418 38.462 0.00 0.00 0.00 2.41
4636 5302 6.072508 AGTCGTAAATTTGTACTCCGTCTGTA 60.073 38.462 0.00 0.00 0.00 2.74
4637 5303 4.919754 GTCGTAAATTTGTACTCCGTCTGT 59.080 41.667 0.00 0.00 0.00 3.41
4638 5304 5.159209 AGTCGTAAATTTGTACTCCGTCTG 58.841 41.667 0.00 0.00 0.00 3.51
4639 5305 5.182760 AGAGTCGTAAATTTGTACTCCGTCT 59.817 40.000 18.30 7.95 37.82 4.18
4643 5309 5.930569 ACCAAGAGTCGTAAATTTGTACTCC 59.069 40.000 18.30 7.60 37.82 3.85
4644 5310 7.046862 GACCAAGAGTCGTAAATTTGTACTC 57.953 40.000 15.92 15.92 35.30 2.59
4659 5325 2.761208 CTCTTATCCGTGGACCAAGAGT 59.239 50.000 22.47 0.00 39.40 3.24
4660 5326 2.101582 CCTCTTATCCGTGGACCAAGAG 59.898 54.545 23.20 23.20 41.47 2.85
4661 5327 2.108168 CCTCTTATCCGTGGACCAAGA 58.892 52.381 9.22 3.36 31.74 3.02
4662 5328 2.101582 CTCCTCTTATCCGTGGACCAAG 59.898 54.545 0.00 0.00 0.00 3.61
4663 5329 2.108168 CTCCTCTTATCCGTGGACCAA 58.892 52.381 0.00 0.00 0.00 3.67
4664 5330 1.776662 CTCCTCTTATCCGTGGACCA 58.223 55.000 0.00 0.00 0.00 4.02
4665 5331 0.389757 GCTCCTCTTATCCGTGGACC 59.610 60.000 0.00 0.00 0.00 4.46
4686 5355 3.624707 GCAGGATGGACAAATAAGGGTCA 60.625 47.826 0.00 0.00 35.74 4.02
4688 5357 2.311542 TGCAGGATGGACAAATAAGGGT 59.688 45.455 0.00 0.00 35.86 4.34
4725 5394 6.663523 ACCTTGTATGGATTTGAAGGTTTAGG 59.336 38.462 0.00 0.00 43.10 2.69
4731 5400 5.450965 GCATGACCTTGTATGGATTTGAAGG 60.451 44.000 0.00 0.00 39.35 3.46
4734 5403 4.598022 TGCATGACCTTGTATGGATTTGA 58.402 39.130 0.00 0.00 0.00 2.69
4741 5410 6.872628 ATCTACATTGCATGACCTTGTATG 57.127 37.500 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.