Multiple sequence alignment - TraesCS1D01G106500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G106500 | chr1D | 100.000 | 5746 | 0 | 0 | 1 | 5746 | 98849521 | 98843776 | 0.000000e+00 | 10611 |
1 | TraesCS1D01G106500 | chr1D | 89.724 | 399 | 35 | 6 | 5332 | 5725 | 299554748 | 299555145 | 6.640000e-139 | 505 |
2 | TraesCS1D01G106500 | chr1D | 98.039 | 102 | 2 | 0 | 1 | 102 | 99388779 | 99388880 | 1.650000e-40 | 178 |
3 | TraesCS1D01G106500 | chr1D | 83.594 | 128 | 12 | 2 | 5209 | 5327 | 343891913 | 343892040 | 1.690000e-20 | 111 |
4 | TraesCS1D01G106500 | chr1B | 96.989 | 2923 | 65 | 11 | 1982 | 4890 | 154154688 | 154157601 | 0.000000e+00 | 4889 |
5 | TraesCS1D01G106500 | chr1B | 93.750 | 1296 | 62 | 8 | 689 | 1981 | 154153363 | 154154642 | 0.000000e+00 | 1927 |
6 | TraesCS1D01G106500 | chr1B | 92.718 | 563 | 38 | 3 | 103 | 663 | 154152808 | 154153369 | 0.000000e+00 | 809 |
7 | TraesCS1D01G106500 | chr1B | 86.207 | 377 | 35 | 13 | 5332 | 5699 | 648790602 | 648790234 | 5.400000e-105 | 392 |
8 | TraesCS1D01G106500 | chr1B | 92.437 | 119 | 9 | 0 | 5209 | 5327 | 461302712 | 461302830 | 2.750000e-38 | 171 |
9 | TraesCS1D01G106500 | chr1B | 84.247 | 146 | 12 | 4 | 5209 | 5344 | 154158181 | 154158325 | 1.300000e-26 | 132 |
10 | TraesCS1D01G106500 | chr1B | 98.361 | 61 | 1 | 0 | 5138 | 5198 | 154157844 | 154157904 | 2.190000e-19 | 108 |
11 | TraesCS1D01G106500 | chr1A | 95.338 | 3089 | 89 | 27 | 1983 | 5045 | 94248010 | 94244951 | 0.000000e+00 | 4855 |
12 | TraesCS1D01G106500 | chr1A | 90.805 | 1566 | 98 | 12 | 455 | 1981 | 94249615 | 94248057 | 0.000000e+00 | 2052 |
13 | TraesCS1D01G106500 | chr1A | 91.597 | 119 | 10 | 0 | 5209 | 5327 | 443202149 | 443202267 | 1.280000e-36 | 165 |
14 | TraesCS1D01G106500 | chr6A | 90.488 | 410 | 29 | 8 | 5332 | 5732 | 465233577 | 465233169 | 3.050000e-147 | 532 |
15 | TraesCS1D01G106500 | chr6D | 90.299 | 402 | 27 | 8 | 5332 | 5725 | 38190492 | 38190889 | 3.070000e-142 | 516 |
16 | TraesCS1D01G106500 | chr6D | 94.643 | 112 | 6 | 0 | 1 | 112 | 278651193 | 278651082 | 2.130000e-39 | 174 |
17 | TraesCS1D01G106500 | chr6D | 94.595 | 111 | 4 | 2 | 1 | 111 | 469403376 | 469403484 | 2.750000e-38 | 171 |
18 | TraesCS1D01G106500 | chr5A | 90.250 | 400 | 31 | 8 | 5332 | 5725 | 560612520 | 560612123 | 3.070000e-142 | 516 |
19 | TraesCS1D01G106500 | chr5A | 89.975 | 399 | 32 | 7 | 5332 | 5725 | 293507537 | 293507932 | 5.140000e-140 | 508 |
20 | TraesCS1D01G106500 | chr5A | 89.109 | 404 | 35 | 8 | 5332 | 5727 | 115245717 | 115246119 | 1.440000e-135 | 494 |
21 | TraesCS1D01G106500 | chr4A | 91.713 | 362 | 25 | 5 | 5372 | 5729 | 594001574 | 594001934 | 1.110000e-136 | 497 |
22 | TraesCS1D01G106500 | chr5D | 88.806 | 402 | 35 | 8 | 5332 | 5725 | 486437796 | 486437397 | 8.660000e-133 | 484 |
23 | TraesCS1D01G106500 | chr3A | 88.279 | 401 | 39 | 8 | 5332 | 5725 | 93265650 | 93265251 | 1.870000e-129 | 473 |
24 | TraesCS1D01G106500 | chr4D | 100.000 | 98 | 0 | 0 | 1 | 98 | 330784636 | 330784539 | 1.270000e-41 | 182 |
25 | TraesCS1D01G106500 | chr4D | 96.262 | 107 | 4 | 0 | 1 | 107 | 473598236 | 473598130 | 5.920000e-40 | 176 |
26 | TraesCS1D01G106500 | chr4D | 91.803 | 122 | 10 | 0 | 1 | 122 | 159348358 | 159348237 | 2.750000e-38 | 171 |
27 | TraesCS1D01G106500 | chr4D | 90.984 | 122 | 11 | 0 | 1 | 122 | 487407355 | 487407234 | 1.280000e-36 | 165 |
28 | TraesCS1D01G106500 | chr2D | 91.803 | 122 | 7 | 3 | 1 | 121 | 202962615 | 202962734 | 3.560000e-37 | 167 |
29 | TraesCS1D01G106500 | chr7D | 91.057 | 123 | 9 | 2 | 1 | 123 | 438482362 | 438482242 | 1.280000e-36 | 165 |
30 | TraesCS1D01G106500 | chr2B | 88.983 | 118 | 11 | 2 | 5209 | 5324 | 794028277 | 794028394 | 1.670000e-30 | 145 |
31 | TraesCS1D01G106500 | chr7B | 85.124 | 121 | 9 | 3 | 5209 | 5320 | 1251084 | 1251204 | 1.310000e-21 | 115 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G106500 | chr1D | 98843776 | 98849521 | 5745 | True | 10611.0 | 10611 | 100.0000 | 1 | 5746 | 1 | chr1D.!!$R1 | 5745 |
1 | TraesCS1D01G106500 | chr1B | 154152808 | 154158325 | 5517 | False | 1573.0 | 4889 | 93.2130 | 103 | 5344 | 5 | chr1B.!!$F2 | 5241 |
2 | TraesCS1D01G106500 | chr1A | 94244951 | 94249615 | 4664 | True | 3453.5 | 4855 | 93.0715 | 455 | 5045 | 2 | chr1A.!!$R1 | 4590 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
94 | 95 | 0.179009 | ATAGCTGCATCGTGGGCATT | 60.179 | 50.000 | 1.02 | 0.0 | 41.06 | 3.56 | F |
98 | 99 | 0.378257 | CTGCATCGTGGGCATTACAC | 59.622 | 55.000 | 0.00 | 0.0 | 41.06 | 2.90 | F |
1237 | 1276 | 0.404812 | GCCCTCCCTATCTCCTCGTA | 59.595 | 60.000 | 0.00 | 0.0 | 0.00 | 3.43 | F |
1823 | 1865 | 1.334869 | CTTGGCTTTGTGTGTCAGGAC | 59.665 | 52.381 | 0.00 | 0.0 | 0.00 | 3.85 | F |
2987 | 3075 | 1.682854 | CCCTTGTCACTTGTGCATGTT | 59.317 | 47.619 | 0.00 | 0.0 | 0.00 | 2.71 | F |
4434 | 4545 | 0.178990 | GCTTGTTGGAGAAGGTGGGT | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 4.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1237 | 1276 | 0.108804 | CTACACAAGCACGTCGGGAT | 60.109 | 55.000 | 0.00 | 0.0 | 0.00 | 3.85 | R |
1640 | 1680 | 0.995803 | TTGATCCGAATCCCCAACCA | 59.004 | 50.000 | 0.00 | 0.0 | 0.00 | 3.67 | R |
3197 | 3287 | 1.670811 | ACAACACTTGAAGGAACTGCG | 59.329 | 47.619 | 0.00 | 0.0 | 36.15 | 5.18 | R |
3600 | 3699 | 3.254166 | CAGCCAAGCTTGTGTATTTGTCT | 59.746 | 43.478 | 24.35 | 6.7 | 36.40 | 3.41 | R |
4651 | 4762 | 0.036022 | ACTTCTCTCTTGTGGCAGGC | 59.964 | 55.000 | 0.00 | 0.0 | 0.00 | 4.85 | R |
5295 | 5764 | 0.179062 | CAGCTATCCACCAGCTCACC | 60.179 | 60.000 | 0.00 | 0.0 | 46.37 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 1.734465 | GTGAAGATGACCCTTCTTGCG | 59.266 | 52.381 | 0.00 | 0.00 | 42.20 | 4.85 |
21 | 22 | 1.623311 | TGAAGATGACCCTTCTTGCGA | 59.377 | 47.619 | 0.00 | 0.00 | 42.20 | 5.10 |
22 | 23 | 2.003301 | GAAGATGACCCTTCTTGCGAC | 58.997 | 52.381 | 0.00 | 0.00 | 39.44 | 5.19 |
23 | 24 | 0.976641 | AGATGACCCTTCTTGCGACA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
24 | 25 | 1.347707 | AGATGACCCTTCTTGCGACAA | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
25 | 26 | 2.151202 | GATGACCCTTCTTGCGACAAA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
26 | 27 | 2.045561 | TGACCCTTCTTGCGACAAAA | 57.954 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
27 | 28 | 1.673920 | TGACCCTTCTTGCGACAAAAC | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
28 | 29 | 1.001706 | GACCCTTCTTGCGACAAAACC | 60.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
29 | 30 | 1.318576 | CCCTTCTTGCGACAAAACCT | 58.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
30 | 31 | 2.158726 | ACCCTTCTTGCGACAAAACCTA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
31 | 32 | 2.225727 | CCCTTCTTGCGACAAAACCTAC | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
32 | 33 | 2.875933 | CCTTCTTGCGACAAAACCTACA | 59.124 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
33 | 34 | 3.314080 | CCTTCTTGCGACAAAACCTACAA | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
34 | 35 | 4.023193 | CCTTCTTGCGACAAAACCTACAAT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
35 | 36 | 4.481930 | TCTTGCGACAAAACCTACAATG | 57.518 | 40.909 | 0.00 | 0.00 | 0.00 | 2.82 |
36 | 37 | 2.697431 | TGCGACAAAACCTACAATGC | 57.303 | 45.000 | 0.00 | 0.00 | 0.00 | 3.56 |
37 | 38 | 1.069568 | TGCGACAAAACCTACAATGCG | 60.070 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
38 | 39 | 1.727857 | GCGACAAAACCTACAATGCGG | 60.728 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
39 | 40 | 1.533731 | CGACAAAACCTACAATGCGGT | 59.466 | 47.619 | 0.00 | 0.00 | 34.27 | 5.68 |
40 | 41 | 2.031508 | CGACAAAACCTACAATGCGGTT | 60.032 | 45.455 | 2.25 | 2.25 | 45.01 | 4.44 |
41 | 42 | 3.186817 | CGACAAAACCTACAATGCGGTTA | 59.813 | 43.478 | 7.78 | 0.00 | 42.42 | 2.85 |
42 | 43 | 4.142773 | CGACAAAACCTACAATGCGGTTAT | 60.143 | 41.667 | 7.78 | 0.00 | 42.42 | 1.89 |
43 | 44 | 5.054390 | ACAAAACCTACAATGCGGTTATG | 57.946 | 39.130 | 7.78 | 0.00 | 42.42 | 1.90 |
44 | 45 | 3.775661 | AAACCTACAATGCGGTTATGC | 57.224 | 42.857 | 7.78 | 0.00 | 42.42 | 3.14 |
45 | 46 | 1.675552 | ACCTACAATGCGGTTATGCC | 58.324 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
46 | 47 | 1.211949 | ACCTACAATGCGGTTATGCCT | 59.788 | 47.619 | 0.00 | 0.00 | 34.25 | 4.75 |
47 | 48 | 1.873591 | CCTACAATGCGGTTATGCCTC | 59.126 | 52.381 | 0.00 | 0.00 | 34.25 | 4.70 |
48 | 49 | 2.485479 | CCTACAATGCGGTTATGCCTCT | 60.485 | 50.000 | 0.00 | 0.00 | 34.25 | 3.69 |
49 | 50 | 3.244078 | CCTACAATGCGGTTATGCCTCTA | 60.244 | 47.826 | 0.00 | 0.00 | 34.25 | 2.43 |
50 | 51 | 3.275617 | ACAATGCGGTTATGCCTCTAA | 57.724 | 42.857 | 0.00 | 0.00 | 34.25 | 2.10 |
51 | 52 | 3.206150 | ACAATGCGGTTATGCCTCTAAG | 58.794 | 45.455 | 0.00 | 0.00 | 34.25 | 2.18 |
52 | 53 | 3.206150 | CAATGCGGTTATGCCTCTAAGT | 58.794 | 45.455 | 0.00 | 0.00 | 34.25 | 2.24 |
53 | 54 | 2.596904 | TGCGGTTATGCCTCTAAGTC | 57.403 | 50.000 | 0.00 | 0.00 | 34.25 | 3.01 |
54 | 55 | 1.202371 | TGCGGTTATGCCTCTAAGTCG | 60.202 | 52.381 | 0.00 | 0.00 | 34.25 | 4.18 |
55 | 56 | 1.202382 | GCGGTTATGCCTCTAAGTCGT | 60.202 | 52.381 | 0.00 | 0.00 | 34.25 | 4.34 |
56 | 57 | 2.460918 | CGGTTATGCCTCTAAGTCGTG | 58.539 | 52.381 | 0.00 | 0.00 | 34.25 | 4.35 |
57 | 58 | 2.202566 | GGTTATGCCTCTAAGTCGTGC | 58.797 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
58 | 59 | 2.202566 | GTTATGCCTCTAAGTCGTGCC | 58.797 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
59 | 60 | 1.776662 | TATGCCTCTAAGTCGTGCCT | 58.223 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
60 | 61 | 0.461961 | ATGCCTCTAAGTCGTGCCTC | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
61 | 62 | 1.226717 | GCCTCTAAGTCGTGCCTCG | 60.227 | 63.158 | 0.00 | 0.00 | 41.41 | 4.63 |
62 | 63 | 1.654954 | GCCTCTAAGTCGTGCCTCGA | 61.655 | 60.000 | 0.00 | 0.00 | 46.83 | 4.04 |
71 | 72 | 2.643272 | GTGCCTCGACACGTGAGA | 59.357 | 61.111 | 25.01 | 19.04 | 35.43 | 3.27 |
72 | 73 | 1.442857 | GTGCCTCGACACGTGAGAG | 60.443 | 63.158 | 25.01 | 26.16 | 35.43 | 3.20 |
73 | 74 | 1.599797 | TGCCTCGACACGTGAGAGA | 60.600 | 57.895 | 31.63 | 22.02 | 35.43 | 3.10 |
74 | 75 | 0.960861 | TGCCTCGACACGTGAGAGAT | 60.961 | 55.000 | 31.63 | 10.71 | 35.43 | 2.75 |
75 | 76 | 1.015109 | GCCTCGACACGTGAGAGATA | 58.985 | 55.000 | 31.63 | 10.85 | 35.43 | 1.98 |
76 | 77 | 1.604755 | GCCTCGACACGTGAGAGATAT | 59.395 | 52.381 | 31.63 | 9.38 | 35.43 | 1.63 |
77 | 78 | 2.806818 | GCCTCGACACGTGAGAGATATA | 59.193 | 50.000 | 31.63 | 8.93 | 35.43 | 0.86 |
78 | 79 | 3.120477 | GCCTCGACACGTGAGAGATATAG | 60.120 | 52.174 | 31.63 | 21.25 | 35.43 | 1.31 |
79 | 80 | 3.120477 | CCTCGACACGTGAGAGATATAGC | 60.120 | 52.174 | 31.63 | 8.26 | 35.43 | 2.97 |
80 | 81 | 3.729966 | TCGACACGTGAGAGATATAGCT | 58.270 | 45.455 | 25.01 | 0.00 | 0.00 | 3.32 |
81 | 82 | 3.495001 | TCGACACGTGAGAGATATAGCTG | 59.505 | 47.826 | 25.01 | 0.00 | 0.00 | 4.24 |
82 | 83 | 3.560503 | GACACGTGAGAGATATAGCTGC | 58.439 | 50.000 | 25.01 | 0.00 | 0.00 | 5.25 |
83 | 84 | 2.952310 | ACACGTGAGAGATATAGCTGCA | 59.048 | 45.455 | 25.01 | 0.00 | 0.00 | 4.41 |
84 | 85 | 3.571828 | ACACGTGAGAGATATAGCTGCAT | 59.428 | 43.478 | 25.01 | 0.00 | 0.00 | 3.96 |
85 | 86 | 4.165036 | CACGTGAGAGATATAGCTGCATC | 58.835 | 47.826 | 10.90 | 0.00 | 0.00 | 3.91 |
86 | 87 | 3.120025 | ACGTGAGAGATATAGCTGCATCG | 60.120 | 47.826 | 1.02 | 3.69 | 0.00 | 3.84 |
87 | 88 | 3.120025 | CGTGAGAGATATAGCTGCATCGT | 60.120 | 47.826 | 1.02 | 0.00 | 0.00 | 3.73 |
88 | 89 | 4.165036 | GTGAGAGATATAGCTGCATCGTG | 58.835 | 47.826 | 1.02 | 0.00 | 0.00 | 4.35 |
89 | 90 | 3.192212 | TGAGAGATATAGCTGCATCGTGG | 59.808 | 47.826 | 1.02 | 0.00 | 0.00 | 4.94 |
90 | 91 | 2.495270 | AGAGATATAGCTGCATCGTGGG | 59.505 | 50.000 | 1.02 | 0.00 | 0.00 | 4.61 |
91 | 92 | 1.066573 | AGATATAGCTGCATCGTGGGC | 60.067 | 52.381 | 1.02 | 0.00 | 0.00 | 5.36 |
92 | 93 | 0.686789 | ATATAGCTGCATCGTGGGCA | 59.313 | 50.000 | 1.02 | 0.00 | 39.32 | 5.36 |
93 | 94 | 0.686789 | TATAGCTGCATCGTGGGCAT | 59.313 | 50.000 | 1.02 | 0.00 | 41.06 | 4.40 |
94 | 95 | 0.179009 | ATAGCTGCATCGTGGGCATT | 60.179 | 50.000 | 1.02 | 0.00 | 41.06 | 3.56 |
95 | 96 | 0.467804 | TAGCTGCATCGTGGGCATTA | 59.532 | 50.000 | 1.02 | 0.00 | 41.06 | 1.90 |
96 | 97 | 1.097547 | AGCTGCATCGTGGGCATTAC | 61.098 | 55.000 | 1.02 | 0.00 | 41.06 | 1.89 |
97 | 98 | 1.375853 | GCTGCATCGTGGGCATTACA | 61.376 | 55.000 | 0.00 | 0.00 | 41.06 | 2.41 |
98 | 99 | 0.378257 | CTGCATCGTGGGCATTACAC | 59.622 | 55.000 | 0.00 | 0.00 | 41.06 | 2.90 |
99 | 100 | 1.029408 | TGCATCGTGGGCATTACACC | 61.029 | 55.000 | 0.00 | 0.00 | 36.11 | 4.16 |
140 | 141 | 4.002506 | AGGTGCGTGACGATGCCA | 62.003 | 61.111 | 10.10 | 0.00 | 32.56 | 4.92 |
146 | 147 | 1.361668 | GCGTGACGATGCCAATCACT | 61.362 | 55.000 | 10.10 | 0.00 | 40.51 | 3.41 |
158 | 159 | 1.359848 | CAATCACTGGGCGACTGTAC | 58.640 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
161 | 162 | 1.374252 | CACTGGGCGACTGTACACC | 60.374 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
233 | 234 | 1.599797 | CTTTCCCACACGTCCACCC | 60.600 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
269 | 270 | 2.373269 | CTTCTTATAGCACGACCGTCG | 58.627 | 52.381 | 19.24 | 19.24 | 46.93 | 5.12 |
298 | 299 | 1.620323 | CCATAGGTCCTCATCATGCGA | 59.380 | 52.381 | 0.00 | 0.00 | 0.00 | 5.10 |
317 | 318 | 1.300620 | CCGCACACGAAACCTCTGA | 60.301 | 57.895 | 0.00 | 0.00 | 43.93 | 3.27 |
332 | 333 | 2.100584 | CCTCTGATGCTCCTACTCACAC | 59.899 | 54.545 | 0.00 | 0.00 | 0.00 | 3.82 |
333 | 334 | 2.757314 | CTCTGATGCTCCTACTCACACA | 59.243 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
346 | 347 | 1.873591 | CTCACACAACGAAGGAAAGGG | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
376 | 377 | 3.354499 | GAGCGGCGAAGAAAGTGCG | 62.354 | 63.158 | 12.98 | 0.00 | 0.00 | 5.34 |
401 | 402 | 3.094062 | ATCCCCGTGATCACTGGCG | 62.094 | 63.158 | 26.25 | 19.80 | 34.78 | 5.69 |
420 | 421 | 2.517166 | GGAAAGGGATGGAGCCGC | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
550 | 552 | 3.629855 | TCGAGAAGTGAGTGGAGATGATC | 59.370 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
575 | 577 | 7.350921 | TCAAATAGGGGAGAAAGATAAGGTCAT | 59.649 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
576 | 578 | 6.943899 | ATAGGGGAGAAAGATAAGGTCATC | 57.056 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
592 | 594 | 3.114647 | ATCGTGGAGAGTCGCTCGC | 62.115 | 63.158 | 0.00 | 2.85 | 44.91 | 5.03 |
703 | 705 | 1.894756 | AACGGCAGCCAAAGCGTTA | 60.895 | 52.632 | 13.30 | 0.00 | 46.67 | 3.18 |
980 | 1019 | 3.881089 | GCCAACCGTATATTAACCTGCTT | 59.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
1237 | 1276 | 0.404812 | GCCCTCCCTATCTCCTCGTA | 59.595 | 60.000 | 0.00 | 0.00 | 0.00 | 3.43 |
1240 | 1279 | 2.357361 | CCCTCCCTATCTCCTCGTATCC | 60.357 | 59.091 | 0.00 | 0.00 | 0.00 | 2.59 |
1389 | 1429 | 3.802685 | GGATCGTAGCGAAATTGTAGCTT | 59.197 | 43.478 | 7.68 | 0.00 | 39.99 | 3.74 |
1455 | 1495 | 6.380846 | TGAAGTGGGAAAATATTGGGATCTTG | 59.619 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
1526 | 1566 | 2.224281 | TGATCTCCTTTTGACGTGCACT | 60.224 | 45.455 | 16.19 | 1.46 | 0.00 | 4.40 |
1528 | 1568 | 3.678056 | TCTCCTTTTGACGTGCACTAT | 57.322 | 42.857 | 16.19 | 2.20 | 0.00 | 2.12 |
1633 | 1673 | 6.620877 | AATCTGGGTATGACAGTAGAAACA | 57.379 | 37.500 | 0.00 | 0.00 | 37.25 | 2.83 |
1634 | 1674 | 6.620877 | ATCTGGGTATGACAGTAGAAACAA | 57.379 | 37.500 | 0.00 | 0.00 | 37.25 | 2.83 |
1653 | 1693 | 3.206150 | CAATCTACTGGTTGGGGATTCG | 58.794 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1772 | 1814 | 5.496556 | TGTTGTTAGATATCTGGTGGGTTG | 58.503 | 41.667 | 15.79 | 0.00 | 0.00 | 3.77 |
1790 | 1832 | 6.152661 | GTGGGTTGTTCTGGATCATATTCAAA | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
1803 | 1845 | 8.510505 | GGATCATATTCAAAGGTAGAATGCTTC | 58.489 | 37.037 | 0.00 | 0.00 | 36.45 | 3.86 |
1823 | 1865 | 1.334869 | CTTGGCTTTGTGTGTCAGGAC | 59.665 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1934 | 1976 | 5.755375 | AGTTGGTGCATCGAACTGAATATAG | 59.245 | 40.000 | 12.20 | 0.00 | 42.05 | 1.31 |
1938 | 1980 | 6.868339 | TGGTGCATCGAACTGAATATAGTATG | 59.132 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
1943 | 1985 | 8.651588 | GCATCGAACTGAATATAGTATGAAAGG | 58.348 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
2252 | 2339 | 8.740906 | CCTTAGATGACTGTACTTTTCTACTCA | 58.259 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2642 | 2729 | 7.596248 | GTGAGAATGCACACTTTGTATTTGATT | 59.404 | 33.333 | 0.00 | 0.00 | 40.32 | 2.57 |
2648 | 2735 | 8.755696 | TGCACACTTTGTATTTGATTAATTCC | 57.244 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
2774 | 2861 | 2.949644 | GCAGGTAAACTCCAACTTGTGT | 59.050 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
2987 | 3075 | 1.682854 | CCCTTGTCACTTGTGCATGTT | 59.317 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
3021 | 3109 | 8.498054 | ACCATTCATCTTCAGTTATACACTTG | 57.502 | 34.615 | 0.00 | 0.00 | 30.92 | 3.16 |
3025 | 3113 | 9.896645 | ATTCATCTTCAGTTATACACTTGACAT | 57.103 | 29.630 | 0.00 | 0.00 | 30.92 | 3.06 |
3070 | 3158 | 7.390823 | TGGAGTTACTTGTGTAGCATCATTAA | 58.609 | 34.615 | 0.00 | 0.00 | 33.17 | 1.40 |
3110 | 3200 | 5.516090 | TGGCGTCTCTCATTTTTGTTTTAC | 58.484 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
3197 | 3287 | 3.019564 | AGCAACCAATGTGAAGATAGCC | 58.980 | 45.455 | 0.00 | 0.00 | 0.00 | 3.93 |
3354 | 3453 | 6.554334 | TCTACTTCATTGCACCACTTTAAC | 57.446 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
3355 | 3454 | 6.058833 | TCTACTTCATTGCACCACTTTAACA | 58.941 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3502 | 3601 | 6.618811 | AGAACTGTCATGCATCTTCATTTTC | 58.381 | 36.000 | 0.00 | 3.18 | 0.00 | 2.29 |
3600 | 3699 | 4.034394 | GTCGTGATTGCTAATCTTGATGCA | 59.966 | 41.667 | 0.00 | 0.00 | 38.72 | 3.96 |
3972 | 4082 | 2.380084 | GTGGAACTAGCCGTGATTCA | 57.620 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4018 | 4128 | 1.797046 | GTCACACATGAGAGCACACTG | 59.203 | 52.381 | 0.00 | 0.00 | 34.75 | 3.66 |
4332 | 4443 | 8.366359 | ACATTTTTCTTCTATAAACCAGGCAT | 57.634 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
4434 | 4545 | 0.178990 | GCTTGTTGGAGAAGGTGGGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
4626 | 4737 | 2.684655 | CCCTGCCATTGTTGGGGG | 60.685 | 66.667 | 0.00 | 0.00 | 43.84 | 5.40 |
4640 | 4751 | 3.181419 | TGTTGGGGGTGTAGTCAGTAGTA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
4651 | 4762 | 5.409520 | TGTAGTCAGTAGTACAACAGTACCG | 59.590 | 44.000 | 2.52 | 0.00 | 38.34 | 4.02 |
4726 | 4837 | 0.591170 | GCAGTGAAAGTTTAGCGGCA | 59.409 | 50.000 | 1.45 | 0.00 | 0.00 | 5.69 |
4780 | 4893 | 8.853077 | AACAACATCTGATATCTGTTTTCTCA | 57.147 | 30.769 | 3.98 | 0.00 | 30.99 | 3.27 |
4794 | 4907 | 4.399934 | TGTTTTCTCAGCCGTTTACCTTTT | 59.600 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
4795 | 4908 | 4.823790 | TTTCTCAGCCGTTTACCTTTTC | 57.176 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
4879 | 4995 | 6.265196 | TGGTGATGACATTAATAAATCTGCCC | 59.735 | 38.462 | 0.00 | 0.00 | 0.00 | 5.36 |
4910 | 5026 | 9.139174 | TGTTTTATAGCTTATTTTGCTTTGCTC | 57.861 | 29.630 | 0.00 | 0.00 | 41.46 | 4.26 |
4951 | 5067 | 2.147958 | TGTCTATTGGGTTCGCAACAC | 58.852 | 47.619 | 4.54 | 3.69 | 34.64 | 3.32 |
4952 | 5068 | 2.147958 | GTCTATTGGGTTCGCAACACA | 58.852 | 47.619 | 4.54 | 0.58 | 44.53 | 3.72 |
4978 | 5096 | 6.882768 | AAATAGGTTTCAGTCTGAGGAGAT | 57.117 | 37.500 | 2.12 | 0.00 | 0.00 | 2.75 |
4994 | 5113 | 7.009179 | TGAGGAGATAGTTGTCACTTGAATT | 57.991 | 36.000 | 0.00 | 0.00 | 34.06 | 2.17 |
4995 | 5114 | 6.875726 | TGAGGAGATAGTTGTCACTTGAATTG | 59.124 | 38.462 | 0.00 | 0.00 | 34.06 | 2.32 |
4996 | 5115 | 6.176183 | AGGAGATAGTTGTCACTTGAATTGG | 58.824 | 40.000 | 0.00 | 0.00 | 34.06 | 3.16 |
5027 | 5147 | 4.770795 | ACAGACTGCAAACTGTTAAGACT | 58.229 | 39.130 | 16.41 | 0.00 | 43.52 | 3.24 |
5045 | 5169 | 9.989394 | GTTAAGACTTTCGCAAAAATTCAATAC | 57.011 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
5046 | 5170 | 9.959749 | TTAAGACTTTCGCAAAAATTCAATACT | 57.040 | 25.926 | 0.00 | 0.00 | 0.00 | 2.12 |
5047 | 5171 | 7.858052 | AGACTTTCGCAAAAATTCAATACTG | 57.142 | 32.000 | 2.98 | 0.00 | 0.00 | 2.74 |
5048 | 5172 | 6.363357 | AGACTTTCGCAAAAATTCAATACTGC | 59.637 | 34.615 | 2.98 | 0.00 | 0.00 | 4.40 |
5050 | 5174 | 6.701400 | ACTTTCGCAAAAATTCAATACTGCTT | 59.299 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
5051 | 5175 | 6.689178 | TTCGCAAAAATTCAATACTGCTTC | 57.311 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
5053 | 5177 | 6.086222 | TCGCAAAAATTCAATACTGCTTCTC | 58.914 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
5054 | 5178 | 5.002840 | CGCAAAAATTCAATACTGCTTCTCG | 59.997 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
5055 | 5179 | 5.858581 | GCAAAAATTCAATACTGCTTCTCGT | 59.141 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
5057 | 5181 | 5.803020 | AAATTCAATACTGCTTCTCGTCC | 57.197 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
5058 | 5182 | 2.561733 | TCAATACTGCTTCTCGTCCG | 57.438 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5060 | 5184 | 2.230508 | TCAATACTGCTTCTCGTCCGTT | 59.769 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
5061 | 5185 | 2.279582 | ATACTGCTTCTCGTCCGTTG | 57.720 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5062 | 5186 | 0.956633 | TACTGCTTCTCGTCCGTTGT | 59.043 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5064 | 5188 | 0.784778 | CTGCTTCTCGTCCGTTGTTC | 59.215 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5065 | 5189 | 0.103390 | TGCTTCTCGTCCGTTGTTCA | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5066 | 5190 | 1.270094 | TGCTTCTCGTCCGTTGTTCAT | 60.270 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
5069 | 5193 | 3.181533 | GCTTCTCGTCCGTTGTTCATTAC | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
5070 | 5194 | 3.928727 | TCTCGTCCGTTGTTCATTACT | 57.071 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
5072 | 5196 | 2.063266 | TCGTCCGTTGTTCATTACTGC | 58.937 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
5073 | 5197 | 2.066262 | CGTCCGTTGTTCATTACTGCT | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
5074 | 5198 | 2.159841 | CGTCCGTTGTTCATTACTGCTG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5075 | 5199 | 2.806244 | GTCCGTTGTTCATTACTGCTGT | 59.194 | 45.455 | 0.66 | 0.66 | 0.00 | 4.40 |
5077 | 5201 | 2.805671 | CCGTTGTTCATTACTGCTGTGA | 59.194 | 45.455 | 6.48 | 0.00 | 0.00 | 3.58 |
5078 | 5202 | 3.363970 | CCGTTGTTCATTACTGCTGTGAC | 60.364 | 47.826 | 6.48 | 0.00 | 0.00 | 3.67 |
5079 | 5203 | 3.363970 | CGTTGTTCATTACTGCTGTGACC | 60.364 | 47.826 | 6.48 | 0.00 | 0.00 | 4.02 |
5080 | 5204 | 2.778299 | TGTTCATTACTGCTGTGACCC | 58.222 | 47.619 | 6.48 | 0.00 | 0.00 | 4.46 |
5081 | 5205 | 2.105649 | TGTTCATTACTGCTGTGACCCA | 59.894 | 45.455 | 6.48 | 0.00 | 0.00 | 4.51 |
5082 | 5206 | 2.472695 | TCATTACTGCTGTGACCCAC | 57.527 | 50.000 | 6.48 | 0.00 | 34.56 | 4.61 |
5083 | 5207 | 1.696884 | TCATTACTGCTGTGACCCACA | 59.303 | 47.619 | 6.48 | 0.00 | 42.45 | 4.17 |
5085 | 5209 | 2.949177 | TTACTGCTGTGACCCACAAT | 57.051 | 45.000 | 6.48 | 0.00 | 44.08 | 2.71 |
5086 | 5210 | 2.183478 | TACTGCTGTGACCCACAATG | 57.817 | 50.000 | 6.48 | 0.00 | 44.08 | 2.82 |
5087 | 5211 | 0.538057 | ACTGCTGTGACCCACAATGG | 60.538 | 55.000 | 0.00 | 0.00 | 44.08 | 3.16 |
5088 | 5212 | 0.538057 | CTGCTGTGACCCACAATGGT | 60.538 | 55.000 | 1.29 | 0.00 | 44.08 | 3.55 |
5096 | 5220 | 0.677731 | ACCCACAATGGTCATCTGCG | 60.678 | 55.000 | 0.00 | 0.00 | 35.17 | 5.18 |
5097 | 5221 | 1.378882 | CCCACAATGGTCATCTGCGG | 61.379 | 60.000 | 0.00 | 0.00 | 35.17 | 5.69 |
5098 | 5222 | 0.677731 | CCACAATGGTCATCTGCGGT | 60.678 | 55.000 | 0.00 | 0.00 | 31.35 | 5.68 |
5099 | 5223 | 0.729116 | CACAATGGTCATCTGCGGTC | 59.271 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5100 | 5224 | 0.740868 | ACAATGGTCATCTGCGGTCG | 60.741 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5102 | 5226 | 1.899437 | AATGGTCATCTGCGGTCGGT | 61.899 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5103 | 5227 | 2.202756 | GGTCATCTGCGGTCGGTC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
5104 | 5228 | 2.711922 | GGTCATCTGCGGTCGGTCT | 61.712 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
5116 | 5297 | 0.672711 | GTCGGTCTTGTAGTTGGGGC | 60.673 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
5119 | 5300 | 1.613255 | CGGTCTTGTAGTTGGGGCAAT | 60.613 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
5122 | 5303 | 1.892474 | TCTTGTAGTTGGGGCAATTGC | 59.108 | 47.619 | 22.47 | 22.47 | 41.14 | 3.56 |
5167 | 5361 | 2.440980 | GGGGCTGTTCCAGGATGC | 60.441 | 66.667 | 0.00 | 0.00 | 36.21 | 3.91 |
5203 | 5397 | 8.893727 | AGCGAAATATAATTCTTAAACAGTGCT | 58.106 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
5213 | 5673 | 7.591006 | TTCTTAAACAGTGCTTAATAGTCCG | 57.409 | 36.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5234 | 5694 | 2.695759 | CGCTCCAGACTCAGCTCGT | 61.696 | 63.158 | 0.00 | 0.00 | 33.09 | 4.18 |
5274 | 5743 | 2.644798 | AGTGGAGCTGGAAAATAGGTGT | 59.355 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
5277 | 5746 | 3.017442 | GGAGCTGGAAAATAGGTGTTCC | 58.983 | 50.000 | 0.00 | 0.00 | 43.15 | 3.62 |
5285 | 5754 | 3.914426 | AAATAGGTGTTCCGCAGATCT | 57.086 | 42.857 | 0.00 | 0.00 | 39.05 | 2.75 |
5295 | 5764 | 4.988540 | TGTTCCGCAGATCTTATAATTCCG | 59.011 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
5296 | 5765 | 4.188247 | TCCGCAGATCTTATAATTCCGG | 57.812 | 45.455 | 0.00 | 0.00 | 34.86 | 5.14 |
5297 | 5766 | 3.576982 | TCCGCAGATCTTATAATTCCGGT | 59.423 | 43.478 | 0.00 | 0.00 | 35.09 | 5.28 |
5320 | 5789 | 1.745141 | GCTGGTGGATAGCTGAACAGG | 60.745 | 57.143 | 0.00 | 0.00 | 38.14 | 4.00 |
5323 | 5792 | 0.543749 | GTGGATAGCTGAACAGGCCT | 59.456 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
5324 | 5793 | 0.543277 | TGGATAGCTGAACAGGCCTG | 59.457 | 55.000 | 31.60 | 31.60 | 0.00 | 4.85 |
5326 | 5795 | 1.210478 | GGATAGCTGAACAGGCCTGAA | 59.790 | 52.381 | 39.19 | 21.56 | 0.00 | 3.02 |
5327 | 5796 | 2.356125 | GGATAGCTGAACAGGCCTGAAA | 60.356 | 50.000 | 39.19 | 21.20 | 0.00 | 2.69 |
5329 | 5798 | 2.299326 | AGCTGAACAGGCCTGAAATT | 57.701 | 45.000 | 39.19 | 22.97 | 0.00 | 1.82 |
5330 | 5799 | 2.165998 | AGCTGAACAGGCCTGAAATTC | 58.834 | 47.619 | 39.19 | 29.25 | 0.00 | 2.17 |
5331 | 5800 | 2.165998 | GCTGAACAGGCCTGAAATTCT | 58.834 | 47.619 | 39.19 | 13.13 | 0.00 | 2.40 |
5334 | 5803 | 4.553323 | CTGAACAGGCCTGAAATTCTTTG | 58.447 | 43.478 | 39.19 | 19.64 | 0.00 | 2.77 |
5337 | 5806 | 3.308401 | ACAGGCCTGAAATTCTTTGGTT | 58.692 | 40.909 | 39.19 | 8.95 | 0.00 | 3.67 |
5344 | 5813 | 4.774200 | CCTGAAATTCTTTGGTTCCTGGAT | 59.226 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
5345 | 5814 | 5.951747 | CCTGAAATTCTTTGGTTCCTGGATA | 59.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5346 | 5815 | 6.127619 | CCTGAAATTCTTTGGTTCCTGGATAC | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
5366 | 5835 | 9.967559 | TGGATACATATGTACCCTATATGGATT | 57.032 | 33.333 | 24.17 | 2.57 | 46.17 | 3.01 |
5440 | 5909 | 7.745620 | AAAACTTGACCTTCCATTGTACTAG | 57.254 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5441 | 5910 | 6.435292 | AACTTGACCTTCCATTGTACTAGT | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
5442 | 5911 | 7.549147 | AACTTGACCTTCCATTGTACTAGTA | 57.451 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5443 | 5912 | 7.549147 | ACTTGACCTTCCATTGTACTAGTAA | 57.451 | 36.000 | 3.61 | 0.00 | 0.00 | 2.24 |
5444 | 5913 | 7.612677 | ACTTGACCTTCCATTGTACTAGTAAG | 58.387 | 38.462 | 3.61 | 0.00 | 0.00 | 2.34 |
5445 | 5914 | 7.453752 | ACTTGACCTTCCATTGTACTAGTAAGA | 59.546 | 37.037 | 3.61 | 0.00 | 0.00 | 2.10 |
5446 | 5915 | 7.786046 | TGACCTTCCATTGTACTAGTAAGAA | 57.214 | 36.000 | 3.61 | 1.15 | 0.00 | 2.52 |
5447 | 5916 | 8.197592 | TGACCTTCCATTGTACTAGTAAGAAA | 57.802 | 34.615 | 3.61 | 0.45 | 0.00 | 2.52 |
5448 | 5917 | 8.653191 | TGACCTTCCATTGTACTAGTAAGAAAA | 58.347 | 33.333 | 3.61 | 0.00 | 0.00 | 2.29 |
5449 | 5918 | 9.152595 | GACCTTCCATTGTACTAGTAAGAAAAG | 57.847 | 37.037 | 3.61 | 4.51 | 0.00 | 2.27 |
5450 | 5919 | 8.657712 | ACCTTCCATTGTACTAGTAAGAAAAGT | 58.342 | 33.333 | 3.61 | 2.14 | 0.00 | 2.66 |
5451 | 5920 | 9.503399 | CCTTCCATTGTACTAGTAAGAAAAGTT | 57.497 | 33.333 | 3.61 | 0.00 | 0.00 | 2.66 |
5514 | 5983 | 7.858052 | AGACAAATTTTCAGTCAAAATAGCG | 57.142 | 32.000 | 9.15 | 0.00 | 42.86 | 4.26 |
5515 | 5984 | 7.425606 | AGACAAATTTTCAGTCAAAATAGCGT | 58.574 | 30.769 | 9.15 | 0.00 | 42.86 | 5.07 |
5516 | 5985 | 7.379529 | AGACAAATTTTCAGTCAAAATAGCGTG | 59.620 | 33.333 | 9.15 | 0.00 | 42.86 | 5.34 |
5517 | 5986 | 7.199766 | ACAAATTTTCAGTCAAAATAGCGTGA | 58.800 | 30.769 | 0.00 | 0.00 | 42.86 | 4.35 |
5518 | 5987 | 7.704472 | ACAAATTTTCAGTCAAAATAGCGTGAA | 59.296 | 29.630 | 0.00 | 0.00 | 42.86 | 3.18 |
5519 | 5988 | 8.702438 | CAAATTTTCAGTCAAAATAGCGTGAAT | 58.298 | 29.630 | 0.00 | 0.00 | 42.86 | 2.57 |
5520 | 5989 | 9.906660 | AAATTTTCAGTCAAAATAGCGTGAATA | 57.093 | 25.926 | 0.00 | 0.00 | 42.86 | 1.75 |
5521 | 5990 | 9.559958 | AATTTTCAGTCAAAATAGCGTGAATAG | 57.440 | 29.630 | 0.00 | 0.00 | 42.86 | 1.73 |
5522 | 5991 | 7.667043 | TTTCAGTCAAAATAGCGTGAATAGT | 57.333 | 32.000 | 0.00 | 0.00 | 0.00 | 2.12 |
5523 | 5992 | 6.647212 | TCAGTCAAAATAGCGTGAATAGTG | 57.353 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
5524 | 5993 | 6.394809 | TCAGTCAAAATAGCGTGAATAGTGA | 58.605 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5525 | 5994 | 6.310467 | TCAGTCAAAATAGCGTGAATAGTGAC | 59.690 | 38.462 | 0.00 | 0.00 | 34.46 | 3.67 |
5526 | 5995 | 5.581085 | AGTCAAAATAGCGTGAATAGTGACC | 59.419 | 40.000 | 0.00 | 0.00 | 34.73 | 4.02 |
5527 | 5996 | 5.581085 | GTCAAAATAGCGTGAATAGTGACCT | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5528 | 5997 | 6.755141 | GTCAAAATAGCGTGAATAGTGACCTA | 59.245 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
5529 | 5998 | 7.438459 | GTCAAAATAGCGTGAATAGTGACCTAT | 59.562 | 37.037 | 0.00 | 0.00 | 35.33 | 2.57 |
5530 | 5999 | 8.635328 | TCAAAATAGCGTGAATAGTGACCTATA | 58.365 | 33.333 | 0.00 | 0.00 | 32.57 | 1.31 |
5531 | 6000 | 9.256477 | CAAAATAGCGTGAATAGTGACCTATAA | 57.744 | 33.333 | 0.00 | 0.00 | 32.57 | 0.98 |
5532 | 6001 | 9.998106 | AAAATAGCGTGAATAGTGACCTATAAT | 57.002 | 29.630 | 0.00 | 0.00 | 32.57 | 1.28 |
5535 | 6004 | 6.622549 | AGCGTGAATAGTGACCTATAATAGC | 58.377 | 40.000 | 0.00 | 0.00 | 32.57 | 2.97 |
5536 | 6005 | 6.208797 | AGCGTGAATAGTGACCTATAATAGCA | 59.791 | 38.462 | 0.00 | 0.00 | 32.57 | 3.49 |
5537 | 6006 | 6.866770 | GCGTGAATAGTGACCTATAATAGCAA | 59.133 | 38.462 | 0.00 | 0.00 | 32.57 | 3.91 |
5538 | 6007 | 7.384115 | GCGTGAATAGTGACCTATAATAGCAAA | 59.616 | 37.037 | 0.00 | 0.00 | 32.57 | 3.68 |
5539 | 6008 | 9.424319 | CGTGAATAGTGACCTATAATAGCAAAT | 57.576 | 33.333 | 0.00 | 0.00 | 32.57 | 2.32 |
5558 | 6027 | 8.141835 | AGCAAATAATTTTTGTCTTTTTCGCT | 57.858 | 26.923 | 11.90 | 0.00 | 0.00 | 4.93 |
5559 | 6028 | 8.063630 | AGCAAATAATTTTTGTCTTTTTCGCTG | 58.936 | 29.630 | 11.90 | 0.00 | 0.00 | 5.18 |
5560 | 6029 | 7.850492 | GCAAATAATTTTTGTCTTTTTCGCTGT | 59.150 | 29.630 | 11.90 | 0.00 | 0.00 | 4.40 |
5561 | 6030 | 9.146270 | CAAATAATTTTTGTCTTTTTCGCTGTG | 57.854 | 29.630 | 0.00 | 0.00 | 0.00 | 3.66 |
5562 | 6031 | 8.641499 | AATAATTTTTGTCTTTTTCGCTGTGA | 57.359 | 26.923 | 0.00 | 0.00 | 0.00 | 3.58 |
5563 | 6032 | 6.959671 | AATTTTTGTCTTTTTCGCTGTGAA | 57.040 | 29.167 | 0.00 | 0.00 | 33.85 | 3.18 |
5564 | 6033 | 6.573617 | ATTTTTGTCTTTTTCGCTGTGAAG | 57.426 | 33.333 | 3.65 | 0.00 | 37.99 | 3.02 |
5565 | 6034 | 4.695217 | TTTGTCTTTTTCGCTGTGAAGT | 57.305 | 36.364 | 3.65 | 0.00 | 37.99 | 3.01 |
5566 | 6035 | 3.944422 | TGTCTTTTTCGCTGTGAAGTC | 57.056 | 42.857 | 3.65 | 0.00 | 37.99 | 3.01 |
5567 | 6036 | 3.266636 | TGTCTTTTTCGCTGTGAAGTCA | 58.733 | 40.909 | 3.65 | 0.00 | 37.99 | 3.41 |
5568 | 6037 | 3.687212 | TGTCTTTTTCGCTGTGAAGTCAA | 59.313 | 39.130 | 3.65 | 0.00 | 37.99 | 3.18 |
5569 | 6038 | 4.029043 | GTCTTTTTCGCTGTGAAGTCAAC | 58.971 | 43.478 | 3.65 | 0.00 | 37.99 | 3.18 |
5570 | 6039 | 2.730183 | TTTTCGCTGTGAAGTCAACG | 57.270 | 45.000 | 3.65 | 0.00 | 37.99 | 4.10 |
5571 | 6040 | 1.647346 | TTTCGCTGTGAAGTCAACGT | 58.353 | 45.000 | 3.65 | 0.00 | 37.99 | 3.99 |
5572 | 6041 | 2.495409 | TTCGCTGTGAAGTCAACGTA | 57.505 | 45.000 | 0.00 | 0.00 | 31.44 | 3.57 |
5573 | 6042 | 2.046283 | TCGCTGTGAAGTCAACGTAG | 57.954 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5574 | 6043 | 2.223641 | TTCGCTGTGAAGTCAACGTAGT | 60.224 | 45.455 | 0.00 | 0.00 | 34.97 | 2.73 |
5575 | 6044 | 3.735820 | TTCGCTGTGAAGTCAACGTAGTT | 60.736 | 43.478 | 0.00 | 0.00 | 41.40 | 2.24 |
5576 | 6045 | 5.206474 | TTCGCTGTGAAGTCAACGTAGTTT | 61.206 | 41.667 | 0.00 | 0.00 | 39.64 | 2.66 |
5577 | 6046 | 6.960320 | TTCGCTGTGAAGTCAACGTAGTTTC | 61.960 | 44.000 | 0.00 | 0.00 | 39.64 | 2.78 |
5616 | 6085 | 9.760077 | AATTTATATACTAGTGCGCAAGTAAGT | 57.240 | 29.630 | 22.10 | 19.00 | 41.68 | 2.24 |
5617 | 6086 | 8.792831 | TTTATATACTAGTGCGCAAGTAAGTC | 57.207 | 34.615 | 22.10 | 5.00 | 41.68 | 3.01 |
5618 | 6087 | 4.713824 | ATACTAGTGCGCAAGTAAGTCA | 57.286 | 40.909 | 22.10 | 5.27 | 41.68 | 3.41 |
5619 | 6088 | 3.380479 | ACTAGTGCGCAAGTAAGTCAA | 57.620 | 42.857 | 14.00 | 0.00 | 41.68 | 3.18 |
5620 | 6089 | 3.318017 | ACTAGTGCGCAAGTAAGTCAAG | 58.682 | 45.455 | 14.00 | 1.66 | 41.68 | 3.02 |
5621 | 6090 | 2.240493 | AGTGCGCAAGTAAGTCAAGT | 57.760 | 45.000 | 14.00 | 0.00 | 41.68 | 3.16 |
5622 | 6091 | 2.561569 | AGTGCGCAAGTAAGTCAAGTT | 58.438 | 42.857 | 14.00 | 0.00 | 41.68 | 2.66 |
5623 | 6092 | 2.943033 | AGTGCGCAAGTAAGTCAAGTTT | 59.057 | 40.909 | 14.00 | 0.00 | 41.68 | 2.66 |
5624 | 6093 | 4.124238 | AGTGCGCAAGTAAGTCAAGTTTA | 58.876 | 39.130 | 14.00 | 0.00 | 41.68 | 2.01 |
5625 | 6094 | 4.755123 | AGTGCGCAAGTAAGTCAAGTTTAT | 59.245 | 37.500 | 14.00 | 0.00 | 41.68 | 1.40 |
5626 | 6095 | 5.238650 | AGTGCGCAAGTAAGTCAAGTTTATT | 59.761 | 36.000 | 14.00 | 0.00 | 41.68 | 1.40 |
5627 | 6096 | 5.564127 | GTGCGCAAGTAAGTCAAGTTTATTC | 59.436 | 40.000 | 14.00 | 0.00 | 41.68 | 1.75 |
5628 | 6097 | 5.468746 | TGCGCAAGTAAGTCAAGTTTATTCT | 59.531 | 36.000 | 8.16 | 0.00 | 41.68 | 2.40 |
5629 | 6098 | 6.647481 | TGCGCAAGTAAGTCAAGTTTATTCTA | 59.353 | 34.615 | 8.16 | 0.00 | 41.68 | 2.10 |
5630 | 6099 | 7.171848 | TGCGCAAGTAAGTCAAGTTTATTCTAA | 59.828 | 33.333 | 8.16 | 0.00 | 41.68 | 2.10 |
5631 | 6100 | 8.013378 | GCGCAAGTAAGTCAAGTTTATTCTAAA | 58.987 | 33.333 | 0.30 | 0.00 | 41.68 | 1.85 |
5632 | 6101 | 9.872757 | CGCAAGTAAGTCAAGTTTATTCTAAAA | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
5713 | 6182 | 5.562298 | GTACATATGTACCAGGGACCATT | 57.438 | 43.478 | 28.48 | 0.00 | 43.73 | 3.16 |
5714 | 6183 | 4.706842 | ACATATGTACCAGGGACCATTC | 57.293 | 45.455 | 6.56 | 0.00 | 0.00 | 2.67 |
5715 | 6184 | 3.071023 | ACATATGTACCAGGGACCATTCG | 59.929 | 47.826 | 6.56 | 0.00 | 0.00 | 3.34 |
5716 | 6185 | 0.837272 | ATGTACCAGGGACCATTCGG | 59.163 | 55.000 | 0.00 | 0.00 | 38.77 | 4.30 |
5727 | 6196 | 2.729028 | ACCATTCGGTATTTCCCCTG | 57.271 | 50.000 | 0.00 | 0.00 | 46.71 | 4.45 |
5728 | 6197 | 1.214424 | ACCATTCGGTATTTCCCCTGG | 59.786 | 52.381 | 0.00 | 0.00 | 46.71 | 4.45 |
5729 | 6198 | 1.493022 | CCATTCGGTATTTCCCCTGGA | 59.507 | 52.381 | 0.00 | 0.00 | 31.23 | 3.86 |
5730 | 6199 | 2.092103 | CCATTCGGTATTTCCCCTGGAA | 60.092 | 50.000 | 0.00 | 0.00 | 40.27 | 3.53 |
5731 | 6200 | 3.214328 | CATTCGGTATTTCCCCTGGAAG | 58.786 | 50.000 | 0.00 | 0.00 | 43.06 | 3.46 |
5732 | 6201 | 1.961133 | TCGGTATTTCCCCTGGAAGT | 58.039 | 50.000 | 0.00 | 0.00 | 43.06 | 3.01 |
5733 | 6202 | 2.271777 | TCGGTATTTCCCCTGGAAGTT | 58.728 | 47.619 | 0.00 | 0.00 | 43.06 | 2.66 |
5734 | 6203 | 2.026636 | TCGGTATTTCCCCTGGAAGTTG | 60.027 | 50.000 | 0.00 | 0.00 | 43.06 | 3.16 |
5735 | 6204 | 2.290705 | CGGTATTTCCCCTGGAAGTTGT | 60.291 | 50.000 | 0.00 | 0.00 | 43.06 | 3.32 |
5736 | 6205 | 3.774734 | GGTATTTCCCCTGGAAGTTGTT | 58.225 | 45.455 | 0.00 | 0.00 | 43.06 | 2.83 |
5737 | 6206 | 3.762288 | GGTATTTCCCCTGGAAGTTGTTC | 59.238 | 47.826 | 0.00 | 0.00 | 43.06 | 3.18 |
5738 | 6207 | 3.611025 | ATTTCCCCTGGAAGTTGTTCA | 57.389 | 42.857 | 0.00 | 0.00 | 43.06 | 3.18 |
5739 | 6208 | 3.611025 | TTTCCCCTGGAAGTTGTTCAT | 57.389 | 42.857 | 0.00 | 0.00 | 43.06 | 2.57 |
5740 | 6209 | 3.611025 | TTCCCCTGGAAGTTGTTCATT | 57.389 | 42.857 | 0.00 | 0.00 | 36.71 | 2.57 |
5741 | 6210 | 3.154827 | TCCCCTGGAAGTTGTTCATTC | 57.845 | 47.619 | 0.00 | 0.00 | 33.93 | 2.67 |
5742 | 6211 | 2.716424 | TCCCCTGGAAGTTGTTCATTCT | 59.284 | 45.455 | 0.00 | 0.00 | 33.93 | 2.40 |
5743 | 6212 | 2.821969 | CCCCTGGAAGTTGTTCATTCTG | 59.178 | 50.000 | 0.00 | 0.00 | 33.93 | 3.02 |
5744 | 6213 | 3.498481 | CCCCTGGAAGTTGTTCATTCTGA | 60.498 | 47.826 | 0.00 | 0.00 | 33.93 | 3.27 |
5745 | 6214 | 4.338879 | CCCTGGAAGTTGTTCATTCTGAT | 58.661 | 43.478 | 0.00 | 0.00 | 33.93 | 2.90 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.734465 | CGCAAGAAGGGTCATCTTCAC | 59.266 | 52.381 | 7.26 | 0.00 | 44.01 | 3.18 |
1 | 2 | 2.099141 | CGCAAGAAGGGTCATCTTCA | 57.901 | 50.000 | 7.26 | 0.00 | 44.01 | 3.02 |
15 | 16 | 2.979813 | GCATTGTAGGTTTTGTCGCAAG | 59.020 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
16 | 17 | 2.603412 | CGCATTGTAGGTTTTGTCGCAA | 60.603 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
17 | 18 | 1.069568 | CGCATTGTAGGTTTTGTCGCA | 60.070 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
18 | 19 | 1.602191 | CGCATTGTAGGTTTTGTCGC | 58.398 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
19 | 20 | 1.533731 | ACCGCATTGTAGGTTTTGTCG | 59.466 | 47.619 | 0.98 | 0.00 | 37.49 | 4.35 |
26 | 27 | 1.211949 | AGGCATAACCGCATTGTAGGT | 59.788 | 47.619 | 0.98 | 0.98 | 46.52 | 3.08 |
27 | 28 | 1.873591 | GAGGCATAACCGCATTGTAGG | 59.126 | 52.381 | 0.00 | 0.00 | 46.52 | 3.18 |
28 | 29 | 2.838736 | AGAGGCATAACCGCATTGTAG | 58.161 | 47.619 | 0.00 | 0.00 | 46.52 | 2.74 |
29 | 30 | 4.141801 | ACTTAGAGGCATAACCGCATTGTA | 60.142 | 41.667 | 0.00 | 0.00 | 46.52 | 2.41 |
30 | 31 | 3.206150 | CTTAGAGGCATAACCGCATTGT | 58.794 | 45.455 | 0.00 | 0.00 | 46.52 | 2.71 |
31 | 32 | 3.206150 | ACTTAGAGGCATAACCGCATTG | 58.794 | 45.455 | 0.00 | 0.00 | 46.52 | 2.82 |
32 | 33 | 3.467803 | GACTTAGAGGCATAACCGCATT | 58.532 | 45.455 | 0.00 | 0.00 | 46.52 | 3.56 |
33 | 34 | 2.545952 | CGACTTAGAGGCATAACCGCAT | 60.546 | 50.000 | 0.00 | 0.00 | 46.52 | 4.73 |
34 | 35 | 1.202371 | CGACTTAGAGGCATAACCGCA | 60.202 | 52.381 | 0.00 | 0.00 | 46.52 | 5.69 |
35 | 36 | 1.202382 | ACGACTTAGAGGCATAACCGC | 60.202 | 52.381 | 0.00 | 0.00 | 46.52 | 5.68 |
36 | 37 | 2.460918 | CACGACTTAGAGGCATAACCG | 58.539 | 52.381 | 0.00 | 0.00 | 46.52 | 4.44 |
37 | 38 | 2.202566 | GCACGACTTAGAGGCATAACC | 58.797 | 52.381 | 0.00 | 0.00 | 39.61 | 2.85 |
38 | 39 | 2.159085 | AGGCACGACTTAGAGGCATAAC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
39 | 40 | 2.100916 | GAGGCACGACTTAGAGGCATAA | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
40 | 41 | 1.681793 | GAGGCACGACTTAGAGGCATA | 59.318 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
41 | 42 | 0.461961 | GAGGCACGACTTAGAGGCAT | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
42 | 43 | 1.890894 | GAGGCACGACTTAGAGGCA | 59.109 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
43 | 44 | 1.226717 | CGAGGCACGACTTAGAGGC | 60.227 | 63.158 | 0.00 | 0.00 | 45.77 | 4.70 |
44 | 45 | 2.478989 | TCGAGGCACGACTTAGAGG | 58.521 | 57.895 | 2.07 | 0.00 | 46.45 | 3.69 |
54 | 55 | 1.442857 | CTCTCACGTGTCGAGGCAC | 60.443 | 63.158 | 21.70 | 0.00 | 36.12 | 5.01 |
55 | 56 | 0.960861 | ATCTCTCACGTGTCGAGGCA | 60.961 | 55.000 | 25.80 | 15.03 | 0.00 | 4.75 |
56 | 57 | 1.015109 | TATCTCTCACGTGTCGAGGC | 58.985 | 55.000 | 25.80 | 0.00 | 0.00 | 4.70 |
57 | 58 | 3.120477 | GCTATATCTCTCACGTGTCGAGG | 60.120 | 52.174 | 25.80 | 16.08 | 0.00 | 4.63 |
58 | 59 | 3.743911 | AGCTATATCTCTCACGTGTCGAG | 59.256 | 47.826 | 22.74 | 22.74 | 0.00 | 4.04 |
59 | 60 | 3.495001 | CAGCTATATCTCTCACGTGTCGA | 59.505 | 47.826 | 16.51 | 12.23 | 0.00 | 4.20 |
60 | 61 | 3.804688 | CAGCTATATCTCTCACGTGTCG | 58.195 | 50.000 | 16.51 | 8.32 | 0.00 | 4.35 |
61 | 62 | 3.003793 | TGCAGCTATATCTCTCACGTGTC | 59.996 | 47.826 | 16.51 | 0.00 | 0.00 | 3.67 |
62 | 63 | 2.952310 | TGCAGCTATATCTCTCACGTGT | 59.048 | 45.455 | 16.51 | 0.00 | 0.00 | 4.49 |
63 | 64 | 3.632855 | TGCAGCTATATCTCTCACGTG | 57.367 | 47.619 | 9.94 | 9.94 | 0.00 | 4.49 |
64 | 65 | 3.120025 | CGATGCAGCTATATCTCTCACGT | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
65 | 66 | 3.120025 | ACGATGCAGCTATATCTCTCACG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
66 | 67 | 4.165036 | CACGATGCAGCTATATCTCTCAC | 58.835 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
67 | 68 | 3.192212 | CCACGATGCAGCTATATCTCTCA | 59.808 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
68 | 69 | 3.428725 | CCCACGATGCAGCTATATCTCTC | 60.429 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
69 | 70 | 2.495270 | CCCACGATGCAGCTATATCTCT | 59.505 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
70 | 71 | 2.886081 | CCCACGATGCAGCTATATCTC | 58.114 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
71 | 72 | 1.066573 | GCCCACGATGCAGCTATATCT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
72 | 73 | 1.338105 | TGCCCACGATGCAGCTATATC | 60.338 | 52.381 | 0.00 | 0.00 | 34.05 | 1.63 |
73 | 74 | 0.686789 | TGCCCACGATGCAGCTATAT | 59.313 | 50.000 | 0.00 | 0.00 | 34.05 | 0.86 |
74 | 75 | 0.686789 | ATGCCCACGATGCAGCTATA | 59.313 | 50.000 | 0.00 | 0.00 | 42.92 | 1.31 |
75 | 76 | 0.179009 | AATGCCCACGATGCAGCTAT | 60.179 | 50.000 | 0.00 | 0.00 | 42.92 | 2.97 |
76 | 77 | 0.467804 | TAATGCCCACGATGCAGCTA | 59.532 | 50.000 | 0.00 | 0.00 | 42.92 | 3.32 |
77 | 78 | 1.097547 | GTAATGCCCACGATGCAGCT | 61.098 | 55.000 | 0.00 | 0.00 | 42.92 | 4.24 |
78 | 79 | 1.356624 | GTAATGCCCACGATGCAGC | 59.643 | 57.895 | 0.00 | 0.00 | 42.92 | 5.25 |
79 | 80 | 0.378257 | GTGTAATGCCCACGATGCAG | 59.622 | 55.000 | 0.00 | 0.00 | 42.92 | 4.41 |
80 | 81 | 1.029408 | GGTGTAATGCCCACGATGCA | 61.029 | 55.000 | 0.00 | 0.00 | 43.97 | 3.96 |
81 | 82 | 1.724582 | GGGTGTAATGCCCACGATGC | 61.725 | 60.000 | 0.00 | 0.00 | 45.40 | 3.91 |
82 | 83 | 2.404083 | GGGTGTAATGCCCACGATG | 58.596 | 57.895 | 0.00 | 0.00 | 45.40 | 3.84 |
83 | 84 | 4.977393 | GGGTGTAATGCCCACGAT | 57.023 | 55.556 | 0.00 | 0.00 | 45.40 | 3.73 |
88 | 89 | 2.601299 | GGGGAGGGTGTAATGCCC | 59.399 | 66.667 | 0.00 | 0.00 | 46.43 | 5.36 |
89 | 90 | 2.601299 | GGGGGAGGGTGTAATGCC | 59.399 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
113 | 114 | 3.681835 | ACGCACCTGGAGGACGAC | 61.682 | 66.667 | 16.25 | 0.00 | 39.97 | 4.34 |
119 | 120 | 1.807165 | CATCGTCACGCACCTGGAG | 60.807 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
140 | 141 | 0.973632 | TGTACAGTCGCCCAGTGATT | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
146 | 147 | 4.367023 | GCGGTGTACAGTCGCCCA | 62.367 | 66.667 | 24.56 | 0.00 | 43.17 | 5.36 |
205 | 206 | 2.034066 | TGGGAAAGAGCAAGGCGG | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
246 | 247 | 1.867166 | GGTCGTGCTATAAGAAGCCC | 58.133 | 55.000 | 0.00 | 0.00 | 42.05 | 5.19 |
247 | 248 | 1.202382 | ACGGTCGTGCTATAAGAAGCC | 60.202 | 52.381 | 0.00 | 0.00 | 42.05 | 4.35 |
298 | 299 | 1.594293 | CAGAGGTTTCGTGTGCGGT | 60.594 | 57.895 | 0.00 | 0.00 | 38.89 | 5.68 |
307 | 308 | 3.449018 | TGAGTAGGAGCATCAGAGGTTTC | 59.551 | 47.826 | 0.00 | 0.00 | 36.25 | 2.78 |
317 | 318 | 1.893137 | TCGTTGTGTGAGTAGGAGCAT | 59.107 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
332 | 333 | 2.332654 | CCCGCCCTTTCCTTCGTTG | 61.333 | 63.158 | 0.00 | 0.00 | 0.00 | 4.10 |
333 | 334 | 2.033602 | CCCGCCCTTTCCTTCGTT | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
376 | 377 | 4.241555 | ATCACGGGGATCCAGCGC | 62.242 | 66.667 | 15.23 | 0.00 | 0.00 | 5.92 |
389 | 390 | 1.363744 | CTTTCCTCGCCAGTGATCAC | 58.636 | 55.000 | 18.47 | 18.47 | 0.00 | 3.06 |
397 | 398 | 1.615124 | TCCATCCCTTTCCTCGCCA | 60.615 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
399 | 400 | 1.524849 | GCTCCATCCCTTTCCTCGC | 60.525 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
401 | 402 | 1.147153 | CGGCTCCATCCCTTTCCTC | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
420 | 421 | 1.670971 | CGCAGCTTTGCATTTGCTCG | 61.671 | 55.000 | 3.94 | 8.68 | 42.66 | 5.03 |
440 | 441 | 0.396435 | ATGCGTCTCCACCTTTGTCA | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
445 | 446 | 1.742761 | CATTCATGCGTCTCCACCTT | 58.257 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
489 | 490 | 0.606604 | TCTTTACTCCCCGTCACTGC | 59.393 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
550 | 552 | 6.900194 | TGACCTTATCTTTCTCCCCTATTTG | 58.100 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
575 | 577 | 3.800863 | GCGAGCGACTCTCCACGA | 61.801 | 66.667 | 0.00 | 0.00 | 38.62 | 4.35 |
576 | 578 | 4.103103 | TGCGAGCGACTCTCCACG | 62.103 | 66.667 | 0.00 | 0.00 | 38.62 | 4.94 |
592 | 594 | 1.446792 | ACGCCTGAATGCTCTCGTG | 60.447 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
664 | 666 | 0.250081 | GATGAGGCCCACGGATCTTC | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 2.87 |
904 | 943 | 2.358737 | GGCGGGCCGATTGGATAG | 60.359 | 66.667 | 33.44 | 0.00 | 37.49 | 2.08 |
923 | 962 | 1.262640 | ACTAGTACTTGGTGGGCCCG | 61.263 | 60.000 | 19.37 | 4.36 | 35.15 | 6.13 |
935 | 974 | 4.686554 | CACCTGTTCTTCTTGCACTAGTAC | 59.313 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
1167 | 1206 | 0.720590 | GAGCGTAGAACTCGACGAGT | 59.279 | 55.000 | 24.44 | 24.44 | 45.59 | 4.18 |
1237 | 1276 | 0.108804 | CTACACAAGCACGTCGGGAT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1240 | 1279 | 1.070843 | CAAACTACACAAGCACGTCGG | 60.071 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1389 | 1429 | 3.117701 | AGCATCTAGACTGCTCTACTCCA | 60.118 | 47.826 | 18.33 | 0.00 | 46.79 | 3.86 |
1446 | 1486 | 4.215399 | CGTTTGTTTTAGCTCAAGATCCCA | 59.785 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
1455 | 1495 | 3.437049 | AGGCAGATCGTTTGTTTTAGCTC | 59.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
1526 | 1566 | 9.875708 | AACAGGCTAATACCAATTCCAATTATA | 57.124 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
1528 | 1568 | 7.836685 | TCAACAGGCTAATACCAATTCCAATTA | 59.163 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1609 | 1649 | 7.016153 | TGTTTCTACTGTCATACCCAGATTT | 57.984 | 36.000 | 0.00 | 0.00 | 34.04 | 2.17 |
1633 | 1673 | 2.172717 | CCGAATCCCCAACCAGTAGATT | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1634 | 1674 | 1.768870 | CCGAATCCCCAACCAGTAGAT | 59.231 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
1640 | 1680 | 0.995803 | TTGATCCGAATCCCCAACCA | 59.004 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1644 | 1684 | 3.951563 | AAGATTTGATCCGAATCCCCA | 57.048 | 42.857 | 12.70 | 0.00 | 35.47 | 4.96 |
1647 | 1687 | 7.649306 | CCACAAAATAAGATTTGATCCGAATCC | 59.351 | 37.037 | 12.70 | 0.51 | 41.73 | 3.01 |
1653 | 1693 | 9.657419 | AAATCACCACAAAATAAGATTTGATCC | 57.343 | 29.630 | 6.76 | 0.00 | 41.73 | 3.36 |
1772 | 1814 | 8.964476 | TTCTACCTTTGAATATGATCCAGAAC | 57.036 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1803 | 1845 | 1.334869 | GTCCTGACACACAAAGCCAAG | 59.665 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
1934 | 1976 | 3.753272 | TCAACAGCTCTTGCCTTTCATAC | 59.247 | 43.478 | 0.00 | 0.00 | 40.80 | 2.39 |
1938 | 1980 | 1.068679 | GCTCAACAGCTCTTGCCTTTC | 60.069 | 52.381 | 0.00 | 0.00 | 43.09 | 2.62 |
2383 | 2470 | 6.216569 | TGTACAAAACACTTTCAAAAGCACA | 58.783 | 32.000 | 0.00 | 0.00 | 39.63 | 4.57 |
2509 | 2596 | 2.672961 | TCGCAGTCAACCTGGATAAG | 57.327 | 50.000 | 0.00 | 0.00 | 41.81 | 1.73 |
2510 | 2597 | 2.499693 | TCATCGCAGTCAACCTGGATAA | 59.500 | 45.455 | 0.00 | 0.00 | 41.81 | 1.75 |
2774 | 2861 | 4.157656 | GCATGGCTGGAAAATGTACTACAA | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
2934 | 3022 | 2.817258 | GTGCCACCACATTGCTTAAGTA | 59.183 | 45.455 | 4.02 | 0.00 | 41.67 | 2.24 |
2987 | 3075 | 7.437713 | ACTGAAGATGAATGGTACCAATAGA | 57.562 | 36.000 | 20.76 | 3.60 | 0.00 | 1.98 |
3021 | 3109 | 5.358160 | AGCAGCCTTTCCAGTATTAAATGTC | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3025 | 3113 | 4.016444 | CCAGCAGCCTTTCCAGTATTAAA | 58.984 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
3070 | 3158 | 9.944376 | AGAGACGCCAACATATACATATAAATT | 57.056 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3090 | 3180 | 7.072030 | CAGGAGTAAAACAAAAATGAGAGACG | 58.928 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
3197 | 3287 | 1.670811 | ACAACACTTGAAGGAACTGCG | 59.329 | 47.619 | 0.00 | 0.00 | 36.15 | 5.18 |
3245 | 3335 | 4.340950 | TCTTTGGTTTCATCAAGGACAACC | 59.659 | 41.667 | 0.00 | 0.00 | 37.92 | 3.77 |
3354 | 3453 | 6.198650 | TGGCACTTGATGAAATTATGTCTG | 57.801 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
3355 | 3454 | 7.414222 | AATGGCACTTGATGAAATTATGTCT | 57.586 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3502 | 3601 | 5.757850 | ACAAACTTGAGTTAGAAAGCTGG | 57.242 | 39.130 | 0.00 | 0.00 | 37.25 | 4.85 |
3600 | 3699 | 3.254166 | CAGCCAAGCTTGTGTATTTGTCT | 59.746 | 43.478 | 24.35 | 6.70 | 36.40 | 3.41 |
3707 | 3814 | 4.283212 | GGTCTTCCATTTGGGTTCATTCAA | 59.717 | 41.667 | 0.00 | 0.00 | 38.11 | 2.69 |
3972 | 4082 | 3.008485 | CCTCTGAAGTAAGCTGACCCTTT | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.11 |
4018 | 4128 | 2.561478 | TTCACCCAGCTTACTTCCAC | 57.439 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4059 | 4169 | 3.016736 | ACAGAAATTGCAACGGATAGGG | 58.983 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
4060 | 4170 | 4.273480 | CCTACAGAAATTGCAACGGATAGG | 59.727 | 45.833 | 0.00 | 5.17 | 0.00 | 2.57 |
4332 | 4443 | 5.945191 | TGCAACATTCACATAGATCTTTCCA | 59.055 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4626 | 4737 | 6.606768 | GGTACTGTTGTACTACTGACTACAC | 58.393 | 44.000 | 18.26 | 9.03 | 46.04 | 2.90 |
4640 | 4751 | 2.032071 | GGCAGGCGGTACTGTTGT | 59.968 | 61.111 | 3.10 | 0.00 | 40.59 | 3.32 |
4651 | 4762 | 0.036022 | ACTTCTCTCTTGTGGCAGGC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4794 | 4907 | 5.046448 | TGCTAAAGTAAATCCCTGTAACCGA | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4795 | 4908 | 5.180271 | TGCTAAAGTAAATCCCTGTAACCG | 58.820 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
4910 | 5026 | 2.549754 | AGCAAACTTTCACGTCCATCAG | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
4951 | 5067 | 6.936279 | TCCTCAGACTGAAACCTATTTACTG | 58.064 | 40.000 | 6.61 | 0.00 | 0.00 | 2.74 |
4952 | 5068 | 6.954684 | TCTCCTCAGACTGAAACCTATTTACT | 59.045 | 38.462 | 6.61 | 0.00 | 0.00 | 2.24 |
4953 | 5069 | 7.171630 | TCTCCTCAGACTGAAACCTATTTAC | 57.828 | 40.000 | 6.61 | 0.00 | 0.00 | 2.01 |
4954 | 5070 | 7.979786 | ATCTCCTCAGACTGAAACCTATTTA | 57.020 | 36.000 | 6.61 | 0.00 | 0.00 | 1.40 |
4978 | 5096 | 6.403866 | AATTGCCAATTCAAGTGACAACTA | 57.596 | 33.333 | 0.00 | 0.00 | 34.77 | 2.24 |
4994 | 5113 | 2.030371 | TGCAGTCTGTTGAAATTGCCA | 58.970 | 42.857 | 0.93 | 0.00 | 0.00 | 4.92 |
4995 | 5114 | 2.798976 | TGCAGTCTGTTGAAATTGCC | 57.201 | 45.000 | 0.93 | 0.00 | 0.00 | 4.52 |
4996 | 5115 | 4.026310 | CAGTTTGCAGTCTGTTGAAATTGC | 60.026 | 41.667 | 0.93 | 0.00 | 0.00 | 3.56 |
5022 | 5142 | 7.096065 | GCAGTATTGAATTTTTGCGAAAGTCTT | 60.096 | 33.333 | 12.10 | 3.50 | 0.00 | 3.01 |
5025 | 5145 | 6.215845 | AGCAGTATTGAATTTTTGCGAAAGT | 58.784 | 32.000 | 0.00 | 0.00 | 36.70 | 2.66 |
5026 | 5146 | 6.695292 | AGCAGTATTGAATTTTTGCGAAAG | 57.305 | 33.333 | 0.00 | 0.00 | 36.70 | 2.62 |
5027 | 5147 | 6.922957 | AGAAGCAGTATTGAATTTTTGCGAAA | 59.077 | 30.769 | 0.00 | 0.00 | 36.70 | 3.46 |
5045 | 5169 | 0.784778 | GAACAACGGACGAGAAGCAG | 59.215 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
5046 | 5170 | 0.103390 | TGAACAACGGACGAGAAGCA | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
5047 | 5171 | 1.429463 | ATGAACAACGGACGAGAAGC | 58.571 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5048 | 5172 | 4.090066 | CAGTAATGAACAACGGACGAGAAG | 59.910 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
5050 | 5174 | 3.571571 | CAGTAATGAACAACGGACGAGA | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
5051 | 5175 | 2.092211 | GCAGTAATGAACAACGGACGAG | 59.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
5053 | 5177 | 2.066262 | AGCAGTAATGAACAACGGACG | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
5054 | 5178 | 2.806244 | ACAGCAGTAATGAACAACGGAC | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5055 | 5179 | 2.805671 | CACAGCAGTAATGAACAACGGA | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
5057 | 5181 | 3.363970 | GGTCACAGCAGTAATGAACAACG | 60.364 | 47.826 | 0.00 | 0.00 | 30.08 | 4.10 |
5058 | 5182 | 3.058224 | GGGTCACAGCAGTAATGAACAAC | 60.058 | 47.826 | 0.00 | 0.00 | 31.33 | 3.32 |
5060 | 5184 | 2.105649 | TGGGTCACAGCAGTAATGAACA | 59.894 | 45.455 | 0.00 | 0.00 | 31.33 | 3.18 |
5061 | 5185 | 2.484264 | GTGGGTCACAGCAGTAATGAAC | 59.516 | 50.000 | 0.00 | 0.00 | 34.08 | 3.18 |
5062 | 5186 | 2.105649 | TGTGGGTCACAGCAGTAATGAA | 59.894 | 45.455 | 0.00 | 0.00 | 39.62 | 2.57 |
5064 | 5188 | 2.183478 | TGTGGGTCACAGCAGTAATG | 57.817 | 50.000 | 0.00 | 0.00 | 39.62 | 1.90 |
5065 | 5189 | 2.949177 | TTGTGGGTCACAGCAGTAAT | 57.051 | 45.000 | 0.97 | 0.00 | 45.39 | 1.89 |
5066 | 5190 | 2.503331 | CATTGTGGGTCACAGCAGTAA | 58.497 | 47.619 | 0.97 | 0.00 | 45.39 | 2.24 |
5069 | 5193 | 0.538057 | ACCATTGTGGGTCACAGCAG | 60.538 | 55.000 | 0.52 | 0.00 | 45.39 | 4.24 |
5070 | 5194 | 1.536180 | ACCATTGTGGGTCACAGCA | 59.464 | 52.632 | 0.52 | 0.00 | 45.39 | 4.41 |
5077 | 5201 | 0.677731 | CGCAGATGACCATTGTGGGT | 60.678 | 55.000 | 0.52 | 0.00 | 43.37 | 4.51 |
5078 | 5202 | 1.378882 | CCGCAGATGACCATTGTGGG | 61.379 | 60.000 | 0.52 | 8.81 | 43.37 | 4.61 |
5079 | 5203 | 0.677731 | ACCGCAGATGACCATTGTGG | 60.678 | 55.000 | 16.09 | 16.09 | 45.61 | 4.17 |
5080 | 5204 | 0.729116 | GACCGCAGATGACCATTGTG | 59.271 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
5081 | 5205 | 0.740868 | CGACCGCAGATGACCATTGT | 60.741 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5082 | 5206 | 1.431488 | CCGACCGCAGATGACCATTG | 61.431 | 60.000 | 0.00 | 0.00 | 0.00 | 2.82 |
5083 | 5207 | 1.153369 | CCGACCGCAGATGACCATT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
5085 | 5209 | 2.994995 | ACCGACCGCAGATGACCA | 60.995 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
5086 | 5210 | 2.202756 | GACCGACCGCAGATGACC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
5087 | 5211 | 1.078759 | CAAGACCGACCGCAGATGAC | 61.079 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5088 | 5212 | 1.215382 | CAAGACCGACCGCAGATGA | 59.785 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
5089 | 5213 | 0.172578 | TACAAGACCGACCGCAGATG | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5090 | 5214 | 0.456221 | CTACAAGACCGACCGCAGAT | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5091 | 5215 | 0.892358 | ACTACAAGACCGACCGCAGA | 60.892 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5092 | 5216 | 0.038526 | AACTACAAGACCGACCGCAG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
5094 | 5218 | 1.012486 | CCAACTACAAGACCGACCGC | 61.012 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
5096 | 5220 | 0.036671 | CCCCAACTACAAGACCGACC | 60.037 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5097 | 5221 | 0.672711 | GCCCCAACTACAAGACCGAC | 60.673 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5098 | 5222 | 1.122632 | TGCCCCAACTACAAGACCGA | 61.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5099 | 5223 | 0.250553 | TTGCCCCAACTACAAGACCG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5100 | 5224 | 2.215942 | ATTGCCCCAACTACAAGACC | 57.784 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5102 | 5226 | 1.892474 | GCAATTGCCCCAACTACAAGA | 59.108 | 47.619 | 20.06 | 0.00 | 34.31 | 3.02 |
5103 | 5227 | 1.617850 | TGCAATTGCCCCAACTACAAG | 59.382 | 47.619 | 26.94 | 0.00 | 41.18 | 3.16 |
5104 | 5228 | 1.617850 | CTGCAATTGCCCCAACTACAA | 59.382 | 47.619 | 26.94 | 3.83 | 41.18 | 2.41 |
5116 | 5297 | 4.357142 | AGCTTAATTCATCGCTGCAATTG | 58.643 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
5119 | 5300 | 3.009026 | TGAGCTTAATTCATCGCTGCAA | 58.991 | 40.909 | 0.00 | 0.00 | 31.96 | 4.08 |
5122 | 5303 | 5.383130 | CATCATGAGCTTAATTCATCGCTG | 58.617 | 41.667 | 0.09 | 0.00 | 33.14 | 5.18 |
5198 | 5392 | 1.202382 | GCGGACGGACTATTAAGCACT | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
5200 | 5394 | 1.066605 | GAGCGGACGGACTATTAAGCA | 59.933 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
5201 | 5395 | 1.602416 | GGAGCGGACGGACTATTAAGC | 60.602 | 57.143 | 0.00 | 0.00 | 0.00 | 3.09 |
5202 | 5396 | 1.679680 | TGGAGCGGACGGACTATTAAG | 59.320 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
5203 | 5397 | 1.679680 | CTGGAGCGGACGGACTATTAA | 59.320 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
5205 | 5399 | 0.395311 | TCTGGAGCGGACGGACTATT | 60.395 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5206 | 5400 | 1.102222 | GTCTGGAGCGGACGGACTAT | 61.102 | 60.000 | 9.21 | 0.00 | 40.30 | 2.12 |
5213 | 5673 | 2.183046 | GCTGAGTCTGGAGCGGAC | 59.817 | 66.667 | 0.00 | 0.00 | 39.81 | 4.79 |
5274 | 5743 | 4.039973 | ACCGGAATTATAAGATCTGCGGAA | 59.960 | 41.667 | 9.46 | 0.00 | 0.00 | 4.30 |
5277 | 5746 | 4.556233 | TCACCGGAATTATAAGATCTGCG | 58.444 | 43.478 | 9.46 | 0.00 | 0.00 | 5.18 |
5285 | 5754 | 3.433031 | CCACCAGCTCACCGGAATTATAA | 60.433 | 47.826 | 9.46 | 0.00 | 0.00 | 0.98 |
5295 | 5764 | 0.179062 | CAGCTATCCACCAGCTCACC | 60.179 | 60.000 | 0.00 | 0.00 | 46.37 | 4.02 |
5296 | 5765 | 0.826715 | TCAGCTATCCACCAGCTCAC | 59.173 | 55.000 | 0.00 | 0.00 | 46.37 | 3.51 |
5297 | 5766 | 1.208052 | GTTCAGCTATCCACCAGCTCA | 59.792 | 52.381 | 0.00 | 0.00 | 46.37 | 4.26 |
5320 | 5789 | 3.306294 | CCAGGAACCAAAGAATTTCAGGC | 60.306 | 47.826 | 0.00 | 0.00 | 35.03 | 4.85 |
5323 | 5792 | 6.310941 | TGTATCCAGGAACCAAAGAATTTCA | 58.689 | 36.000 | 0.00 | 0.00 | 35.03 | 2.69 |
5324 | 5793 | 6.834168 | TGTATCCAGGAACCAAAGAATTTC | 57.166 | 37.500 | 0.00 | 0.00 | 35.03 | 2.17 |
5326 | 5795 | 8.061304 | ACATATGTATCCAGGAACCAAAGAATT | 58.939 | 33.333 | 6.56 | 0.00 | 0.00 | 2.17 |
5327 | 5796 | 7.586349 | ACATATGTATCCAGGAACCAAAGAAT | 58.414 | 34.615 | 6.56 | 0.00 | 0.00 | 2.40 |
5329 | 5798 | 6.575244 | ACATATGTATCCAGGAACCAAAGA | 57.425 | 37.500 | 6.56 | 0.00 | 0.00 | 2.52 |
5330 | 5799 | 6.710744 | GGTACATATGTATCCAGGAACCAAAG | 59.289 | 42.308 | 18.27 | 0.00 | 32.54 | 2.77 |
5331 | 5800 | 6.597562 | GGTACATATGTATCCAGGAACCAAA | 58.402 | 40.000 | 18.27 | 0.00 | 32.54 | 3.28 |
5415 | 5884 | 7.778382 | ACTAGTACAATGGAAGGTCAAGTTTTT | 59.222 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
5416 | 5885 | 7.287810 | ACTAGTACAATGGAAGGTCAAGTTTT | 58.712 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
5417 | 5886 | 6.838382 | ACTAGTACAATGGAAGGTCAAGTTT | 58.162 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5418 | 5887 | 6.435292 | ACTAGTACAATGGAAGGTCAAGTT | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
5419 | 5888 | 7.453752 | TCTTACTAGTACAATGGAAGGTCAAGT | 59.546 | 37.037 | 0.91 | 0.00 | 0.00 | 3.16 |
5420 | 5889 | 7.837863 | TCTTACTAGTACAATGGAAGGTCAAG | 58.162 | 38.462 | 0.91 | 0.00 | 0.00 | 3.02 |
5421 | 5890 | 7.786046 | TCTTACTAGTACAATGGAAGGTCAA | 57.214 | 36.000 | 0.91 | 0.00 | 0.00 | 3.18 |
5422 | 5891 | 7.786046 | TTCTTACTAGTACAATGGAAGGTCA | 57.214 | 36.000 | 0.91 | 0.00 | 0.00 | 4.02 |
5423 | 5892 | 9.152595 | CTTTTCTTACTAGTACAATGGAAGGTC | 57.847 | 37.037 | 0.91 | 0.00 | 0.00 | 3.85 |
5424 | 5893 | 8.657712 | ACTTTTCTTACTAGTACAATGGAAGGT | 58.342 | 33.333 | 0.91 | 0.00 | 0.00 | 3.50 |
5425 | 5894 | 9.503399 | AACTTTTCTTACTAGTACAATGGAAGG | 57.497 | 33.333 | 0.91 | 0.00 | 0.00 | 3.46 |
5488 | 5957 | 8.755018 | CGCTATTTTGACTGAAAATTTGTCTTT | 58.245 | 29.630 | 8.19 | 0.00 | 40.73 | 2.52 |
5489 | 5958 | 7.920682 | ACGCTATTTTGACTGAAAATTTGTCTT | 59.079 | 29.630 | 8.19 | 0.00 | 40.73 | 3.01 |
5490 | 5959 | 7.379529 | CACGCTATTTTGACTGAAAATTTGTCT | 59.620 | 33.333 | 8.19 | 0.00 | 40.73 | 3.41 |
5491 | 5960 | 7.378461 | TCACGCTATTTTGACTGAAAATTTGTC | 59.622 | 33.333 | 0.00 | 0.00 | 40.73 | 3.18 |
5492 | 5961 | 7.199766 | TCACGCTATTTTGACTGAAAATTTGT | 58.800 | 30.769 | 0.00 | 0.00 | 40.73 | 2.83 |
5493 | 5962 | 7.621832 | TCACGCTATTTTGACTGAAAATTTG | 57.378 | 32.000 | 0.00 | 0.00 | 40.73 | 2.32 |
5494 | 5963 | 8.816640 | ATTCACGCTATTTTGACTGAAAATTT | 57.183 | 26.923 | 0.00 | 0.00 | 40.73 | 1.82 |
5495 | 5964 | 9.559958 | CTATTCACGCTATTTTGACTGAAAATT | 57.440 | 29.630 | 0.00 | 0.00 | 40.73 | 1.82 |
5496 | 5965 | 8.730680 | ACTATTCACGCTATTTTGACTGAAAAT | 58.269 | 29.630 | 0.00 | 0.00 | 44.77 | 1.82 |
5497 | 5966 | 8.015087 | CACTATTCACGCTATTTTGACTGAAAA | 58.985 | 33.333 | 0.00 | 0.00 | 37.93 | 2.29 |
5498 | 5967 | 7.386573 | TCACTATTCACGCTATTTTGACTGAAA | 59.613 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
5499 | 5968 | 6.871492 | TCACTATTCACGCTATTTTGACTGAA | 59.129 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
5500 | 5969 | 6.310467 | GTCACTATTCACGCTATTTTGACTGA | 59.690 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
5501 | 5970 | 6.455646 | GGTCACTATTCACGCTATTTTGACTG | 60.456 | 42.308 | 0.00 | 0.00 | 33.05 | 3.51 |
5502 | 5971 | 5.581085 | GGTCACTATTCACGCTATTTTGACT | 59.419 | 40.000 | 0.00 | 0.00 | 33.05 | 3.41 |
5503 | 5972 | 5.581085 | AGGTCACTATTCACGCTATTTTGAC | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5504 | 5973 | 5.730550 | AGGTCACTATTCACGCTATTTTGA | 58.269 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
5505 | 5974 | 7.715265 | ATAGGTCACTATTCACGCTATTTTG | 57.285 | 36.000 | 0.00 | 0.00 | 36.51 | 2.44 |
5506 | 5975 | 9.998106 | ATTATAGGTCACTATTCACGCTATTTT | 57.002 | 29.630 | 0.00 | 0.00 | 40.35 | 1.82 |
5509 | 5978 | 8.407064 | GCTATTATAGGTCACTATTCACGCTAT | 58.593 | 37.037 | 1.12 | 0.00 | 40.35 | 2.97 |
5510 | 5979 | 7.392393 | TGCTATTATAGGTCACTATTCACGCTA | 59.608 | 37.037 | 1.12 | 0.00 | 40.35 | 4.26 |
5511 | 5980 | 6.208797 | TGCTATTATAGGTCACTATTCACGCT | 59.791 | 38.462 | 1.12 | 0.00 | 40.35 | 5.07 |
5512 | 5981 | 6.387465 | TGCTATTATAGGTCACTATTCACGC | 58.613 | 40.000 | 1.12 | 0.00 | 40.35 | 5.34 |
5513 | 5982 | 8.812147 | TTTGCTATTATAGGTCACTATTCACG | 57.188 | 34.615 | 1.12 | 0.00 | 40.35 | 4.35 |
5532 | 6001 | 9.255304 | AGCGAAAAAGACAAAAATTATTTGCTA | 57.745 | 25.926 | 10.89 | 0.00 | 32.93 | 3.49 |
5533 | 6002 | 8.063630 | CAGCGAAAAAGACAAAAATTATTTGCT | 58.936 | 29.630 | 10.89 | 0.00 | 32.93 | 3.91 |
5534 | 6003 | 7.850492 | ACAGCGAAAAAGACAAAAATTATTTGC | 59.150 | 29.630 | 10.89 | 0.00 | 32.93 | 3.68 |
5535 | 6004 | 9.146270 | CACAGCGAAAAAGACAAAAATTATTTG | 57.854 | 29.630 | 9.92 | 9.92 | 35.64 | 2.32 |
5536 | 6005 | 9.092876 | TCACAGCGAAAAAGACAAAAATTATTT | 57.907 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
5537 | 6006 | 8.641499 | TCACAGCGAAAAAGACAAAAATTATT | 57.359 | 26.923 | 0.00 | 0.00 | 0.00 | 1.40 |
5538 | 6007 | 8.641499 | TTCACAGCGAAAAAGACAAAAATTAT | 57.359 | 26.923 | 0.00 | 0.00 | 0.00 | 1.28 |
5539 | 6008 | 7.757624 | ACTTCACAGCGAAAAAGACAAAAATTA | 59.242 | 29.630 | 0.00 | 0.00 | 31.71 | 1.40 |
5540 | 6009 | 6.589907 | ACTTCACAGCGAAAAAGACAAAAATT | 59.410 | 30.769 | 0.00 | 0.00 | 31.71 | 1.82 |
5541 | 6010 | 6.099341 | ACTTCACAGCGAAAAAGACAAAAAT | 58.901 | 32.000 | 0.00 | 0.00 | 31.71 | 1.82 |
5542 | 6011 | 5.465935 | ACTTCACAGCGAAAAAGACAAAAA | 58.534 | 33.333 | 0.00 | 0.00 | 31.71 | 1.94 |
5543 | 6012 | 5.054390 | ACTTCACAGCGAAAAAGACAAAA | 57.946 | 34.783 | 0.00 | 0.00 | 31.71 | 2.44 |
5544 | 6013 | 4.155099 | TGACTTCACAGCGAAAAAGACAAA | 59.845 | 37.500 | 0.00 | 0.00 | 31.71 | 2.83 |
5545 | 6014 | 3.687212 | TGACTTCACAGCGAAAAAGACAA | 59.313 | 39.130 | 0.00 | 0.00 | 31.71 | 3.18 |
5546 | 6015 | 3.266636 | TGACTTCACAGCGAAAAAGACA | 58.733 | 40.909 | 0.00 | 0.00 | 31.71 | 3.41 |
5547 | 6016 | 3.944422 | TGACTTCACAGCGAAAAAGAC | 57.056 | 42.857 | 0.00 | 0.00 | 31.71 | 3.01 |
5548 | 6017 | 3.242284 | CGTTGACTTCACAGCGAAAAAGA | 60.242 | 43.478 | 0.00 | 0.00 | 44.63 | 2.52 |
5549 | 6018 | 3.029074 | CGTTGACTTCACAGCGAAAAAG | 58.971 | 45.455 | 0.00 | 0.00 | 44.63 | 2.27 |
5550 | 6019 | 2.417239 | ACGTTGACTTCACAGCGAAAAA | 59.583 | 40.909 | 11.22 | 0.00 | 44.63 | 1.94 |
5551 | 6020 | 2.004017 | ACGTTGACTTCACAGCGAAAA | 58.996 | 42.857 | 11.22 | 0.00 | 44.63 | 2.29 |
5552 | 6021 | 1.647346 | ACGTTGACTTCACAGCGAAA | 58.353 | 45.000 | 11.22 | 0.00 | 44.63 | 3.46 |
5553 | 6022 | 2.223641 | ACTACGTTGACTTCACAGCGAA | 60.224 | 45.455 | 3.44 | 0.00 | 44.63 | 4.70 |
5554 | 6023 | 1.335810 | ACTACGTTGACTTCACAGCGA | 59.664 | 47.619 | 3.44 | 0.00 | 44.63 | 4.93 |
5555 | 6024 | 1.767289 | ACTACGTTGACTTCACAGCG | 58.233 | 50.000 | 3.44 | 0.00 | 46.51 | 5.18 |
5556 | 6025 | 3.802685 | AGAAACTACGTTGACTTCACAGC | 59.197 | 43.478 | 3.44 | 0.00 | 0.00 | 4.40 |
5557 | 6026 | 5.968387 | AAGAAACTACGTTGACTTCACAG | 57.032 | 39.130 | 3.44 | 0.00 | 0.00 | 3.66 |
5558 | 6027 | 6.730960 | AAAAGAAACTACGTTGACTTCACA | 57.269 | 33.333 | 3.44 | 0.00 | 0.00 | 3.58 |
5590 | 6059 | 9.760077 | ACTTACTTGCGCACTAGTATATAAATT | 57.240 | 29.630 | 19.70 | 1.85 | 34.71 | 1.82 |
5591 | 6060 | 9.408069 | GACTTACTTGCGCACTAGTATATAAAT | 57.592 | 33.333 | 19.70 | 0.27 | 34.71 | 1.40 |
5592 | 6061 | 8.407832 | TGACTTACTTGCGCACTAGTATATAAA | 58.592 | 33.333 | 19.70 | 8.11 | 34.71 | 1.40 |
5593 | 6062 | 7.933396 | TGACTTACTTGCGCACTAGTATATAA | 58.067 | 34.615 | 19.70 | 8.42 | 34.71 | 0.98 |
5594 | 6063 | 7.500720 | TGACTTACTTGCGCACTAGTATATA | 57.499 | 36.000 | 19.70 | 7.22 | 34.71 | 0.86 |
5595 | 6064 | 6.387041 | TGACTTACTTGCGCACTAGTATAT | 57.613 | 37.500 | 19.70 | 12.35 | 34.71 | 0.86 |
5596 | 6065 | 5.823209 | TGACTTACTTGCGCACTAGTATA | 57.177 | 39.130 | 19.70 | 11.39 | 34.71 | 1.47 |
5597 | 6066 | 4.713824 | TGACTTACTTGCGCACTAGTAT | 57.286 | 40.909 | 19.70 | 8.54 | 34.71 | 2.12 |
5598 | 6067 | 4.022589 | ACTTGACTTACTTGCGCACTAGTA | 60.023 | 41.667 | 11.12 | 14.33 | 33.72 | 1.82 |
5599 | 6068 | 3.243771 | ACTTGACTTACTTGCGCACTAGT | 60.244 | 43.478 | 18.09 | 18.09 | 35.90 | 2.57 |
5600 | 6069 | 3.318017 | ACTTGACTTACTTGCGCACTAG | 58.682 | 45.455 | 11.12 | 8.97 | 0.00 | 2.57 |
5601 | 6070 | 3.380479 | ACTTGACTTACTTGCGCACTA | 57.620 | 42.857 | 11.12 | 0.00 | 0.00 | 2.74 |
5602 | 6071 | 2.240493 | ACTTGACTTACTTGCGCACT | 57.760 | 45.000 | 11.12 | 0.00 | 0.00 | 4.40 |
5603 | 6072 | 3.334272 | AAACTTGACTTACTTGCGCAC | 57.666 | 42.857 | 11.12 | 0.00 | 0.00 | 5.34 |
5604 | 6073 | 5.468746 | AGAATAAACTTGACTTACTTGCGCA | 59.531 | 36.000 | 5.66 | 5.66 | 0.00 | 6.09 |
5605 | 6074 | 5.928153 | AGAATAAACTTGACTTACTTGCGC | 58.072 | 37.500 | 0.00 | 0.00 | 0.00 | 6.09 |
5606 | 6075 | 9.872757 | TTTTAGAATAAACTTGACTTACTTGCG | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 4.85 |
5692 | 6161 | 4.282449 | CGAATGGTCCCTGGTACATATGTA | 59.718 | 45.833 | 11.62 | 11.62 | 38.20 | 2.29 |
5693 | 6162 | 3.071023 | CGAATGGTCCCTGGTACATATGT | 59.929 | 47.826 | 13.93 | 13.93 | 38.20 | 2.29 |
5694 | 6163 | 3.557054 | CCGAATGGTCCCTGGTACATATG | 60.557 | 52.174 | 0.00 | 0.00 | 38.20 | 1.78 |
5695 | 6164 | 2.637872 | CCGAATGGTCCCTGGTACATAT | 59.362 | 50.000 | 0.00 | 0.00 | 38.20 | 1.78 |
5696 | 6165 | 2.043992 | CCGAATGGTCCCTGGTACATA | 58.956 | 52.381 | 0.00 | 0.00 | 38.20 | 2.29 |
5697 | 6166 | 0.837272 | CCGAATGGTCCCTGGTACAT | 59.163 | 55.000 | 0.00 | 0.00 | 38.20 | 2.29 |
5698 | 6167 | 2.292866 | CCGAATGGTCCCTGGTACA | 58.707 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
5707 | 6176 | 6.454393 | TTCCAGGGGAAATACCGAATGGTC | 62.454 | 50.000 | 0.00 | 0.00 | 41.11 | 4.02 |
5708 | 6177 | 4.661745 | TTCCAGGGGAAATACCGAATGGT | 61.662 | 47.826 | 0.00 | 0.00 | 44.75 | 3.55 |
5709 | 6178 | 1.493022 | TCCAGGGGAAATACCGAATGG | 59.507 | 52.381 | 0.00 | 0.00 | 40.11 | 3.16 |
5710 | 6179 | 3.214328 | CTTCCAGGGGAAATACCGAATG | 58.786 | 50.000 | 0.00 | 0.00 | 41.54 | 2.67 |
5711 | 6180 | 2.850568 | ACTTCCAGGGGAAATACCGAAT | 59.149 | 45.455 | 0.00 | 0.00 | 41.54 | 3.34 |
5712 | 6181 | 2.271777 | ACTTCCAGGGGAAATACCGAA | 58.728 | 47.619 | 0.00 | 0.00 | 41.54 | 4.30 |
5713 | 6182 | 1.961133 | ACTTCCAGGGGAAATACCGA | 58.039 | 50.000 | 0.00 | 0.00 | 41.54 | 4.69 |
5714 | 6183 | 2.290705 | ACAACTTCCAGGGGAAATACCG | 60.291 | 50.000 | 0.00 | 0.00 | 41.54 | 4.02 |
5715 | 6184 | 3.451402 | ACAACTTCCAGGGGAAATACC | 57.549 | 47.619 | 0.00 | 0.00 | 41.54 | 2.73 |
5716 | 6185 | 4.403734 | TGAACAACTTCCAGGGGAAATAC | 58.596 | 43.478 | 0.00 | 0.00 | 41.54 | 1.89 |
5717 | 6186 | 4.733077 | TGAACAACTTCCAGGGGAAATA | 57.267 | 40.909 | 0.00 | 0.00 | 41.54 | 1.40 |
5718 | 6187 | 3.611025 | TGAACAACTTCCAGGGGAAAT | 57.389 | 42.857 | 0.00 | 0.00 | 41.54 | 2.17 |
5719 | 6188 | 3.611025 | ATGAACAACTTCCAGGGGAAA | 57.389 | 42.857 | 0.00 | 0.00 | 41.54 | 3.13 |
5720 | 6189 | 3.140144 | AGAATGAACAACTTCCAGGGGAA | 59.860 | 43.478 | 0.00 | 0.00 | 39.66 | 3.97 |
5721 | 6190 | 2.716424 | AGAATGAACAACTTCCAGGGGA | 59.284 | 45.455 | 0.00 | 0.00 | 0.00 | 4.81 |
5722 | 6191 | 2.821969 | CAGAATGAACAACTTCCAGGGG | 59.178 | 50.000 | 0.00 | 0.00 | 39.69 | 4.79 |
5723 | 6192 | 3.754965 | TCAGAATGAACAACTTCCAGGG | 58.245 | 45.455 | 0.00 | 0.00 | 45.97 | 4.45 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.