Multiple sequence alignment - TraesCS1D01G106500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G106500 chr1D 100.000 5746 0 0 1 5746 98849521 98843776 0.000000e+00 10611
1 TraesCS1D01G106500 chr1D 89.724 399 35 6 5332 5725 299554748 299555145 6.640000e-139 505
2 TraesCS1D01G106500 chr1D 98.039 102 2 0 1 102 99388779 99388880 1.650000e-40 178
3 TraesCS1D01G106500 chr1D 83.594 128 12 2 5209 5327 343891913 343892040 1.690000e-20 111
4 TraesCS1D01G106500 chr1B 96.989 2923 65 11 1982 4890 154154688 154157601 0.000000e+00 4889
5 TraesCS1D01G106500 chr1B 93.750 1296 62 8 689 1981 154153363 154154642 0.000000e+00 1927
6 TraesCS1D01G106500 chr1B 92.718 563 38 3 103 663 154152808 154153369 0.000000e+00 809
7 TraesCS1D01G106500 chr1B 86.207 377 35 13 5332 5699 648790602 648790234 5.400000e-105 392
8 TraesCS1D01G106500 chr1B 92.437 119 9 0 5209 5327 461302712 461302830 2.750000e-38 171
9 TraesCS1D01G106500 chr1B 84.247 146 12 4 5209 5344 154158181 154158325 1.300000e-26 132
10 TraesCS1D01G106500 chr1B 98.361 61 1 0 5138 5198 154157844 154157904 2.190000e-19 108
11 TraesCS1D01G106500 chr1A 95.338 3089 89 27 1983 5045 94248010 94244951 0.000000e+00 4855
12 TraesCS1D01G106500 chr1A 90.805 1566 98 12 455 1981 94249615 94248057 0.000000e+00 2052
13 TraesCS1D01G106500 chr1A 91.597 119 10 0 5209 5327 443202149 443202267 1.280000e-36 165
14 TraesCS1D01G106500 chr6A 90.488 410 29 8 5332 5732 465233577 465233169 3.050000e-147 532
15 TraesCS1D01G106500 chr6D 90.299 402 27 8 5332 5725 38190492 38190889 3.070000e-142 516
16 TraesCS1D01G106500 chr6D 94.643 112 6 0 1 112 278651193 278651082 2.130000e-39 174
17 TraesCS1D01G106500 chr6D 94.595 111 4 2 1 111 469403376 469403484 2.750000e-38 171
18 TraesCS1D01G106500 chr5A 90.250 400 31 8 5332 5725 560612520 560612123 3.070000e-142 516
19 TraesCS1D01G106500 chr5A 89.975 399 32 7 5332 5725 293507537 293507932 5.140000e-140 508
20 TraesCS1D01G106500 chr5A 89.109 404 35 8 5332 5727 115245717 115246119 1.440000e-135 494
21 TraesCS1D01G106500 chr4A 91.713 362 25 5 5372 5729 594001574 594001934 1.110000e-136 497
22 TraesCS1D01G106500 chr5D 88.806 402 35 8 5332 5725 486437796 486437397 8.660000e-133 484
23 TraesCS1D01G106500 chr3A 88.279 401 39 8 5332 5725 93265650 93265251 1.870000e-129 473
24 TraesCS1D01G106500 chr4D 100.000 98 0 0 1 98 330784636 330784539 1.270000e-41 182
25 TraesCS1D01G106500 chr4D 96.262 107 4 0 1 107 473598236 473598130 5.920000e-40 176
26 TraesCS1D01G106500 chr4D 91.803 122 10 0 1 122 159348358 159348237 2.750000e-38 171
27 TraesCS1D01G106500 chr4D 90.984 122 11 0 1 122 487407355 487407234 1.280000e-36 165
28 TraesCS1D01G106500 chr2D 91.803 122 7 3 1 121 202962615 202962734 3.560000e-37 167
29 TraesCS1D01G106500 chr7D 91.057 123 9 2 1 123 438482362 438482242 1.280000e-36 165
30 TraesCS1D01G106500 chr2B 88.983 118 11 2 5209 5324 794028277 794028394 1.670000e-30 145
31 TraesCS1D01G106500 chr7B 85.124 121 9 3 5209 5320 1251084 1251204 1.310000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G106500 chr1D 98843776 98849521 5745 True 10611.0 10611 100.0000 1 5746 1 chr1D.!!$R1 5745
1 TraesCS1D01G106500 chr1B 154152808 154158325 5517 False 1573.0 4889 93.2130 103 5344 5 chr1B.!!$F2 5241
2 TraesCS1D01G106500 chr1A 94244951 94249615 4664 True 3453.5 4855 93.0715 455 5045 2 chr1A.!!$R1 4590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.179009 ATAGCTGCATCGTGGGCATT 60.179 50.000 1.02 0.0 41.06 3.56 F
98 99 0.378257 CTGCATCGTGGGCATTACAC 59.622 55.000 0.00 0.0 41.06 2.90 F
1237 1276 0.404812 GCCCTCCCTATCTCCTCGTA 59.595 60.000 0.00 0.0 0.00 3.43 F
1823 1865 1.334869 CTTGGCTTTGTGTGTCAGGAC 59.665 52.381 0.00 0.0 0.00 3.85 F
2987 3075 1.682854 CCCTTGTCACTTGTGCATGTT 59.317 47.619 0.00 0.0 0.00 2.71 F
4434 4545 0.178990 GCTTGTTGGAGAAGGTGGGT 60.179 55.000 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1237 1276 0.108804 CTACACAAGCACGTCGGGAT 60.109 55.000 0.00 0.0 0.00 3.85 R
1640 1680 0.995803 TTGATCCGAATCCCCAACCA 59.004 50.000 0.00 0.0 0.00 3.67 R
3197 3287 1.670811 ACAACACTTGAAGGAACTGCG 59.329 47.619 0.00 0.0 36.15 5.18 R
3600 3699 3.254166 CAGCCAAGCTTGTGTATTTGTCT 59.746 43.478 24.35 6.7 36.40 3.41 R
4651 4762 0.036022 ACTTCTCTCTTGTGGCAGGC 59.964 55.000 0.00 0.0 0.00 4.85 R
5295 5764 0.179062 CAGCTATCCACCAGCTCACC 60.179 60.000 0.00 0.0 46.37 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.734465 GTGAAGATGACCCTTCTTGCG 59.266 52.381 0.00 0.00 42.20 4.85
21 22 1.623311 TGAAGATGACCCTTCTTGCGA 59.377 47.619 0.00 0.00 42.20 5.10
22 23 2.003301 GAAGATGACCCTTCTTGCGAC 58.997 52.381 0.00 0.00 39.44 5.19
23 24 0.976641 AGATGACCCTTCTTGCGACA 59.023 50.000 0.00 0.00 0.00 4.35
24 25 1.347707 AGATGACCCTTCTTGCGACAA 59.652 47.619 0.00 0.00 0.00 3.18
25 26 2.151202 GATGACCCTTCTTGCGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
26 27 2.045561 TGACCCTTCTTGCGACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
27 28 1.673920 TGACCCTTCTTGCGACAAAAC 59.326 47.619 0.00 0.00 0.00 2.43
28 29 1.001706 GACCCTTCTTGCGACAAAACC 60.002 52.381 0.00 0.00 0.00 3.27
29 30 1.318576 CCCTTCTTGCGACAAAACCT 58.681 50.000 0.00 0.00 0.00 3.50
30 31 2.158726 ACCCTTCTTGCGACAAAACCTA 60.159 45.455 0.00 0.00 0.00 3.08
31 32 2.225727 CCCTTCTTGCGACAAAACCTAC 59.774 50.000 0.00 0.00 0.00 3.18
32 33 2.875933 CCTTCTTGCGACAAAACCTACA 59.124 45.455 0.00 0.00 0.00 2.74
33 34 3.314080 CCTTCTTGCGACAAAACCTACAA 59.686 43.478 0.00 0.00 0.00 2.41
34 35 4.023193 CCTTCTTGCGACAAAACCTACAAT 60.023 41.667 0.00 0.00 0.00 2.71
35 36 4.481930 TCTTGCGACAAAACCTACAATG 57.518 40.909 0.00 0.00 0.00 2.82
36 37 2.697431 TGCGACAAAACCTACAATGC 57.303 45.000 0.00 0.00 0.00 3.56
37 38 1.069568 TGCGACAAAACCTACAATGCG 60.070 47.619 0.00 0.00 0.00 4.73
38 39 1.727857 GCGACAAAACCTACAATGCGG 60.728 52.381 0.00 0.00 0.00 5.69
39 40 1.533731 CGACAAAACCTACAATGCGGT 59.466 47.619 0.00 0.00 34.27 5.68
40 41 2.031508 CGACAAAACCTACAATGCGGTT 60.032 45.455 2.25 2.25 45.01 4.44
41 42 3.186817 CGACAAAACCTACAATGCGGTTA 59.813 43.478 7.78 0.00 42.42 2.85
42 43 4.142773 CGACAAAACCTACAATGCGGTTAT 60.143 41.667 7.78 0.00 42.42 1.89
43 44 5.054390 ACAAAACCTACAATGCGGTTATG 57.946 39.130 7.78 0.00 42.42 1.90
44 45 3.775661 AAACCTACAATGCGGTTATGC 57.224 42.857 7.78 0.00 42.42 3.14
45 46 1.675552 ACCTACAATGCGGTTATGCC 58.324 50.000 0.00 0.00 0.00 4.40
46 47 1.211949 ACCTACAATGCGGTTATGCCT 59.788 47.619 0.00 0.00 34.25 4.75
47 48 1.873591 CCTACAATGCGGTTATGCCTC 59.126 52.381 0.00 0.00 34.25 4.70
48 49 2.485479 CCTACAATGCGGTTATGCCTCT 60.485 50.000 0.00 0.00 34.25 3.69
49 50 3.244078 CCTACAATGCGGTTATGCCTCTA 60.244 47.826 0.00 0.00 34.25 2.43
50 51 3.275617 ACAATGCGGTTATGCCTCTAA 57.724 42.857 0.00 0.00 34.25 2.10
51 52 3.206150 ACAATGCGGTTATGCCTCTAAG 58.794 45.455 0.00 0.00 34.25 2.18
52 53 3.206150 CAATGCGGTTATGCCTCTAAGT 58.794 45.455 0.00 0.00 34.25 2.24
53 54 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
54 55 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
55 56 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
56 57 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
57 58 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
58 59 2.202566 GTTATGCCTCTAAGTCGTGCC 58.797 52.381 0.00 0.00 0.00 5.01
59 60 1.776662 TATGCCTCTAAGTCGTGCCT 58.223 50.000 0.00 0.00 0.00 4.75
60 61 0.461961 ATGCCTCTAAGTCGTGCCTC 59.538 55.000 0.00 0.00 0.00 4.70
61 62 1.226717 GCCTCTAAGTCGTGCCTCG 60.227 63.158 0.00 0.00 41.41 4.63
62 63 1.654954 GCCTCTAAGTCGTGCCTCGA 61.655 60.000 0.00 0.00 46.83 4.04
71 72 2.643272 GTGCCTCGACACGTGAGA 59.357 61.111 25.01 19.04 35.43 3.27
72 73 1.442857 GTGCCTCGACACGTGAGAG 60.443 63.158 25.01 26.16 35.43 3.20
73 74 1.599797 TGCCTCGACACGTGAGAGA 60.600 57.895 31.63 22.02 35.43 3.10
74 75 0.960861 TGCCTCGACACGTGAGAGAT 60.961 55.000 31.63 10.71 35.43 2.75
75 76 1.015109 GCCTCGACACGTGAGAGATA 58.985 55.000 31.63 10.85 35.43 1.98
76 77 1.604755 GCCTCGACACGTGAGAGATAT 59.395 52.381 31.63 9.38 35.43 1.63
77 78 2.806818 GCCTCGACACGTGAGAGATATA 59.193 50.000 31.63 8.93 35.43 0.86
78 79 3.120477 GCCTCGACACGTGAGAGATATAG 60.120 52.174 31.63 21.25 35.43 1.31
79 80 3.120477 CCTCGACACGTGAGAGATATAGC 60.120 52.174 31.63 8.26 35.43 2.97
80 81 3.729966 TCGACACGTGAGAGATATAGCT 58.270 45.455 25.01 0.00 0.00 3.32
81 82 3.495001 TCGACACGTGAGAGATATAGCTG 59.505 47.826 25.01 0.00 0.00 4.24
82 83 3.560503 GACACGTGAGAGATATAGCTGC 58.439 50.000 25.01 0.00 0.00 5.25
83 84 2.952310 ACACGTGAGAGATATAGCTGCA 59.048 45.455 25.01 0.00 0.00 4.41
84 85 3.571828 ACACGTGAGAGATATAGCTGCAT 59.428 43.478 25.01 0.00 0.00 3.96
85 86 4.165036 CACGTGAGAGATATAGCTGCATC 58.835 47.826 10.90 0.00 0.00 3.91
86 87 3.120025 ACGTGAGAGATATAGCTGCATCG 60.120 47.826 1.02 3.69 0.00 3.84
87 88 3.120025 CGTGAGAGATATAGCTGCATCGT 60.120 47.826 1.02 0.00 0.00 3.73
88 89 4.165036 GTGAGAGATATAGCTGCATCGTG 58.835 47.826 1.02 0.00 0.00 4.35
89 90 3.192212 TGAGAGATATAGCTGCATCGTGG 59.808 47.826 1.02 0.00 0.00 4.94
90 91 2.495270 AGAGATATAGCTGCATCGTGGG 59.505 50.000 1.02 0.00 0.00 4.61
91 92 1.066573 AGATATAGCTGCATCGTGGGC 60.067 52.381 1.02 0.00 0.00 5.36
92 93 0.686789 ATATAGCTGCATCGTGGGCA 59.313 50.000 1.02 0.00 39.32 5.36
93 94 0.686789 TATAGCTGCATCGTGGGCAT 59.313 50.000 1.02 0.00 41.06 4.40
94 95 0.179009 ATAGCTGCATCGTGGGCATT 60.179 50.000 1.02 0.00 41.06 3.56
95 96 0.467804 TAGCTGCATCGTGGGCATTA 59.532 50.000 1.02 0.00 41.06 1.90
96 97 1.097547 AGCTGCATCGTGGGCATTAC 61.098 55.000 1.02 0.00 41.06 1.89
97 98 1.375853 GCTGCATCGTGGGCATTACA 61.376 55.000 0.00 0.00 41.06 2.41
98 99 0.378257 CTGCATCGTGGGCATTACAC 59.622 55.000 0.00 0.00 41.06 2.90
99 100 1.029408 TGCATCGTGGGCATTACACC 61.029 55.000 0.00 0.00 36.11 4.16
140 141 4.002506 AGGTGCGTGACGATGCCA 62.003 61.111 10.10 0.00 32.56 4.92
146 147 1.361668 GCGTGACGATGCCAATCACT 61.362 55.000 10.10 0.00 40.51 3.41
158 159 1.359848 CAATCACTGGGCGACTGTAC 58.640 55.000 0.00 0.00 0.00 2.90
161 162 1.374252 CACTGGGCGACTGTACACC 60.374 63.158 0.00 0.00 0.00 4.16
233 234 1.599797 CTTTCCCACACGTCCACCC 60.600 63.158 0.00 0.00 0.00 4.61
269 270 2.373269 CTTCTTATAGCACGACCGTCG 58.627 52.381 19.24 19.24 46.93 5.12
298 299 1.620323 CCATAGGTCCTCATCATGCGA 59.380 52.381 0.00 0.00 0.00 5.10
317 318 1.300620 CCGCACACGAAACCTCTGA 60.301 57.895 0.00 0.00 43.93 3.27
332 333 2.100584 CCTCTGATGCTCCTACTCACAC 59.899 54.545 0.00 0.00 0.00 3.82
333 334 2.757314 CTCTGATGCTCCTACTCACACA 59.243 50.000 0.00 0.00 0.00 3.72
346 347 1.873591 CTCACACAACGAAGGAAAGGG 59.126 52.381 0.00 0.00 0.00 3.95
376 377 3.354499 GAGCGGCGAAGAAAGTGCG 62.354 63.158 12.98 0.00 0.00 5.34
401 402 3.094062 ATCCCCGTGATCACTGGCG 62.094 63.158 26.25 19.80 34.78 5.69
420 421 2.517166 GGAAAGGGATGGAGCCGC 60.517 66.667 0.00 0.00 0.00 6.53
550 552 3.629855 TCGAGAAGTGAGTGGAGATGATC 59.370 47.826 0.00 0.00 0.00 2.92
575 577 7.350921 TCAAATAGGGGAGAAAGATAAGGTCAT 59.649 37.037 0.00 0.00 0.00 3.06
576 578 6.943899 ATAGGGGAGAAAGATAAGGTCATC 57.056 41.667 0.00 0.00 0.00 2.92
592 594 3.114647 ATCGTGGAGAGTCGCTCGC 62.115 63.158 0.00 2.85 44.91 5.03
703 705 1.894756 AACGGCAGCCAAAGCGTTA 60.895 52.632 13.30 0.00 46.67 3.18
980 1019 3.881089 GCCAACCGTATATTAACCTGCTT 59.119 43.478 0.00 0.00 0.00 3.91
1237 1276 0.404812 GCCCTCCCTATCTCCTCGTA 59.595 60.000 0.00 0.00 0.00 3.43
1240 1279 2.357361 CCCTCCCTATCTCCTCGTATCC 60.357 59.091 0.00 0.00 0.00 2.59
1389 1429 3.802685 GGATCGTAGCGAAATTGTAGCTT 59.197 43.478 7.68 0.00 39.99 3.74
1455 1495 6.380846 TGAAGTGGGAAAATATTGGGATCTTG 59.619 38.462 0.00 0.00 0.00 3.02
1526 1566 2.224281 TGATCTCCTTTTGACGTGCACT 60.224 45.455 16.19 1.46 0.00 4.40
1528 1568 3.678056 TCTCCTTTTGACGTGCACTAT 57.322 42.857 16.19 2.20 0.00 2.12
1633 1673 6.620877 AATCTGGGTATGACAGTAGAAACA 57.379 37.500 0.00 0.00 37.25 2.83
1634 1674 6.620877 ATCTGGGTATGACAGTAGAAACAA 57.379 37.500 0.00 0.00 37.25 2.83
1653 1693 3.206150 CAATCTACTGGTTGGGGATTCG 58.794 50.000 0.00 0.00 0.00 3.34
1772 1814 5.496556 TGTTGTTAGATATCTGGTGGGTTG 58.503 41.667 15.79 0.00 0.00 3.77
1790 1832 6.152661 GTGGGTTGTTCTGGATCATATTCAAA 59.847 38.462 0.00 0.00 0.00 2.69
1803 1845 8.510505 GGATCATATTCAAAGGTAGAATGCTTC 58.489 37.037 0.00 0.00 36.45 3.86
1823 1865 1.334869 CTTGGCTTTGTGTGTCAGGAC 59.665 52.381 0.00 0.00 0.00 3.85
1934 1976 5.755375 AGTTGGTGCATCGAACTGAATATAG 59.245 40.000 12.20 0.00 42.05 1.31
1938 1980 6.868339 TGGTGCATCGAACTGAATATAGTATG 59.132 38.462 0.00 0.00 0.00 2.39
1943 1985 8.651588 GCATCGAACTGAATATAGTATGAAAGG 58.348 37.037 0.00 0.00 0.00 3.11
2252 2339 8.740906 CCTTAGATGACTGTACTTTTCTACTCA 58.259 37.037 0.00 0.00 0.00 3.41
2642 2729 7.596248 GTGAGAATGCACACTTTGTATTTGATT 59.404 33.333 0.00 0.00 40.32 2.57
2648 2735 8.755696 TGCACACTTTGTATTTGATTAATTCC 57.244 30.769 0.00 0.00 0.00 3.01
2774 2861 2.949644 GCAGGTAAACTCCAACTTGTGT 59.050 45.455 0.00 0.00 0.00 3.72
2987 3075 1.682854 CCCTTGTCACTTGTGCATGTT 59.317 47.619 0.00 0.00 0.00 2.71
3021 3109 8.498054 ACCATTCATCTTCAGTTATACACTTG 57.502 34.615 0.00 0.00 30.92 3.16
3025 3113 9.896645 ATTCATCTTCAGTTATACACTTGACAT 57.103 29.630 0.00 0.00 30.92 3.06
3070 3158 7.390823 TGGAGTTACTTGTGTAGCATCATTAA 58.609 34.615 0.00 0.00 33.17 1.40
3110 3200 5.516090 TGGCGTCTCTCATTTTTGTTTTAC 58.484 37.500 0.00 0.00 0.00 2.01
3197 3287 3.019564 AGCAACCAATGTGAAGATAGCC 58.980 45.455 0.00 0.00 0.00 3.93
3354 3453 6.554334 TCTACTTCATTGCACCACTTTAAC 57.446 37.500 0.00 0.00 0.00 2.01
3355 3454 6.058833 TCTACTTCATTGCACCACTTTAACA 58.941 36.000 0.00 0.00 0.00 2.41
3502 3601 6.618811 AGAACTGTCATGCATCTTCATTTTC 58.381 36.000 0.00 3.18 0.00 2.29
3600 3699 4.034394 GTCGTGATTGCTAATCTTGATGCA 59.966 41.667 0.00 0.00 38.72 3.96
3972 4082 2.380084 GTGGAACTAGCCGTGATTCA 57.620 50.000 0.00 0.00 0.00 2.57
4018 4128 1.797046 GTCACACATGAGAGCACACTG 59.203 52.381 0.00 0.00 34.75 3.66
4332 4443 8.366359 ACATTTTTCTTCTATAAACCAGGCAT 57.634 30.769 0.00 0.00 0.00 4.40
4434 4545 0.178990 GCTTGTTGGAGAAGGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
4626 4737 2.684655 CCCTGCCATTGTTGGGGG 60.685 66.667 0.00 0.00 43.84 5.40
4640 4751 3.181419 TGTTGGGGGTGTAGTCAGTAGTA 60.181 47.826 0.00 0.00 0.00 1.82
4651 4762 5.409520 TGTAGTCAGTAGTACAACAGTACCG 59.590 44.000 2.52 0.00 38.34 4.02
4726 4837 0.591170 GCAGTGAAAGTTTAGCGGCA 59.409 50.000 1.45 0.00 0.00 5.69
4780 4893 8.853077 AACAACATCTGATATCTGTTTTCTCA 57.147 30.769 3.98 0.00 30.99 3.27
4794 4907 4.399934 TGTTTTCTCAGCCGTTTACCTTTT 59.600 37.500 0.00 0.00 0.00 2.27
4795 4908 4.823790 TTTCTCAGCCGTTTACCTTTTC 57.176 40.909 0.00 0.00 0.00 2.29
4879 4995 6.265196 TGGTGATGACATTAATAAATCTGCCC 59.735 38.462 0.00 0.00 0.00 5.36
4910 5026 9.139174 TGTTTTATAGCTTATTTTGCTTTGCTC 57.861 29.630 0.00 0.00 41.46 4.26
4951 5067 2.147958 TGTCTATTGGGTTCGCAACAC 58.852 47.619 4.54 3.69 34.64 3.32
4952 5068 2.147958 GTCTATTGGGTTCGCAACACA 58.852 47.619 4.54 0.58 44.53 3.72
4978 5096 6.882768 AAATAGGTTTCAGTCTGAGGAGAT 57.117 37.500 2.12 0.00 0.00 2.75
4994 5113 7.009179 TGAGGAGATAGTTGTCACTTGAATT 57.991 36.000 0.00 0.00 34.06 2.17
4995 5114 6.875726 TGAGGAGATAGTTGTCACTTGAATTG 59.124 38.462 0.00 0.00 34.06 2.32
4996 5115 6.176183 AGGAGATAGTTGTCACTTGAATTGG 58.824 40.000 0.00 0.00 34.06 3.16
5027 5147 4.770795 ACAGACTGCAAACTGTTAAGACT 58.229 39.130 16.41 0.00 43.52 3.24
5045 5169 9.989394 GTTAAGACTTTCGCAAAAATTCAATAC 57.011 29.630 0.00 0.00 0.00 1.89
5046 5170 9.959749 TTAAGACTTTCGCAAAAATTCAATACT 57.040 25.926 0.00 0.00 0.00 2.12
5047 5171 7.858052 AGACTTTCGCAAAAATTCAATACTG 57.142 32.000 2.98 0.00 0.00 2.74
5048 5172 6.363357 AGACTTTCGCAAAAATTCAATACTGC 59.637 34.615 2.98 0.00 0.00 4.40
5050 5174 6.701400 ACTTTCGCAAAAATTCAATACTGCTT 59.299 30.769 0.00 0.00 0.00 3.91
5051 5175 6.689178 TTCGCAAAAATTCAATACTGCTTC 57.311 33.333 0.00 0.00 0.00 3.86
5053 5177 6.086222 TCGCAAAAATTCAATACTGCTTCTC 58.914 36.000 0.00 0.00 0.00 2.87
5054 5178 5.002840 CGCAAAAATTCAATACTGCTTCTCG 59.997 40.000 0.00 0.00 0.00 4.04
5055 5179 5.858581 GCAAAAATTCAATACTGCTTCTCGT 59.141 36.000 0.00 0.00 0.00 4.18
5057 5181 5.803020 AAATTCAATACTGCTTCTCGTCC 57.197 39.130 0.00 0.00 0.00 4.79
5058 5182 2.561733 TCAATACTGCTTCTCGTCCG 57.438 50.000 0.00 0.00 0.00 4.79
5060 5184 2.230508 TCAATACTGCTTCTCGTCCGTT 59.769 45.455 0.00 0.00 0.00 4.44
5061 5185 2.279582 ATACTGCTTCTCGTCCGTTG 57.720 50.000 0.00 0.00 0.00 4.10
5062 5186 0.956633 TACTGCTTCTCGTCCGTTGT 59.043 50.000 0.00 0.00 0.00 3.32
5064 5188 0.784778 CTGCTTCTCGTCCGTTGTTC 59.215 55.000 0.00 0.00 0.00 3.18
5065 5189 0.103390 TGCTTCTCGTCCGTTGTTCA 59.897 50.000 0.00 0.00 0.00 3.18
5066 5190 1.270094 TGCTTCTCGTCCGTTGTTCAT 60.270 47.619 0.00 0.00 0.00 2.57
5069 5193 3.181533 GCTTCTCGTCCGTTGTTCATTAC 60.182 47.826 0.00 0.00 0.00 1.89
5070 5194 3.928727 TCTCGTCCGTTGTTCATTACT 57.071 42.857 0.00 0.00 0.00 2.24
5072 5196 2.063266 TCGTCCGTTGTTCATTACTGC 58.937 47.619 0.00 0.00 0.00 4.40
5073 5197 2.066262 CGTCCGTTGTTCATTACTGCT 58.934 47.619 0.00 0.00 0.00 4.24
5074 5198 2.159841 CGTCCGTTGTTCATTACTGCTG 60.160 50.000 0.00 0.00 0.00 4.41
5075 5199 2.806244 GTCCGTTGTTCATTACTGCTGT 59.194 45.455 0.66 0.66 0.00 4.40
5077 5201 2.805671 CCGTTGTTCATTACTGCTGTGA 59.194 45.455 6.48 0.00 0.00 3.58
5078 5202 3.363970 CCGTTGTTCATTACTGCTGTGAC 60.364 47.826 6.48 0.00 0.00 3.67
5079 5203 3.363970 CGTTGTTCATTACTGCTGTGACC 60.364 47.826 6.48 0.00 0.00 4.02
5080 5204 2.778299 TGTTCATTACTGCTGTGACCC 58.222 47.619 6.48 0.00 0.00 4.46
5081 5205 2.105649 TGTTCATTACTGCTGTGACCCA 59.894 45.455 6.48 0.00 0.00 4.51
5082 5206 2.472695 TCATTACTGCTGTGACCCAC 57.527 50.000 6.48 0.00 34.56 4.61
5083 5207 1.696884 TCATTACTGCTGTGACCCACA 59.303 47.619 6.48 0.00 42.45 4.17
5085 5209 2.949177 TTACTGCTGTGACCCACAAT 57.051 45.000 6.48 0.00 44.08 2.71
5086 5210 2.183478 TACTGCTGTGACCCACAATG 57.817 50.000 6.48 0.00 44.08 2.82
5087 5211 0.538057 ACTGCTGTGACCCACAATGG 60.538 55.000 0.00 0.00 44.08 3.16
5088 5212 0.538057 CTGCTGTGACCCACAATGGT 60.538 55.000 1.29 0.00 44.08 3.55
5096 5220 0.677731 ACCCACAATGGTCATCTGCG 60.678 55.000 0.00 0.00 35.17 5.18
5097 5221 1.378882 CCCACAATGGTCATCTGCGG 61.379 60.000 0.00 0.00 35.17 5.69
5098 5222 0.677731 CCACAATGGTCATCTGCGGT 60.678 55.000 0.00 0.00 31.35 5.68
5099 5223 0.729116 CACAATGGTCATCTGCGGTC 59.271 55.000 0.00 0.00 0.00 4.79
5100 5224 0.740868 ACAATGGTCATCTGCGGTCG 60.741 55.000 0.00 0.00 0.00 4.79
5102 5226 1.899437 AATGGTCATCTGCGGTCGGT 61.899 55.000 0.00 0.00 0.00 4.69
5103 5227 2.202756 GGTCATCTGCGGTCGGTC 60.203 66.667 0.00 0.00 0.00 4.79
5104 5228 2.711922 GGTCATCTGCGGTCGGTCT 61.712 63.158 0.00 0.00 0.00 3.85
5116 5297 0.672711 GTCGGTCTTGTAGTTGGGGC 60.673 60.000 0.00 0.00 0.00 5.80
5119 5300 1.613255 CGGTCTTGTAGTTGGGGCAAT 60.613 52.381 0.00 0.00 0.00 3.56
5122 5303 1.892474 TCTTGTAGTTGGGGCAATTGC 59.108 47.619 22.47 22.47 41.14 3.56
5167 5361 2.440980 GGGGCTGTTCCAGGATGC 60.441 66.667 0.00 0.00 36.21 3.91
5203 5397 8.893727 AGCGAAATATAATTCTTAAACAGTGCT 58.106 29.630 0.00 0.00 0.00 4.40
5213 5673 7.591006 TTCTTAAACAGTGCTTAATAGTCCG 57.409 36.000 0.00 0.00 0.00 4.79
5234 5694 2.695759 CGCTCCAGACTCAGCTCGT 61.696 63.158 0.00 0.00 33.09 4.18
5274 5743 2.644798 AGTGGAGCTGGAAAATAGGTGT 59.355 45.455 0.00 0.00 0.00 4.16
5277 5746 3.017442 GGAGCTGGAAAATAGGTGTTCC 58.983 50.000 0.00 0.00 43.15 3.62
5285 5754 3.914426 AAATAGGTGTTCCGCAGATCT 57.086 42.857 0.00 0.00 39.05 2.75
5295 5764 4.988540 TGTTCCGCAGATCTTATAATTCCG 59.011 41.667 0.00 0.00 0.00 4.30
5296 5765 4.188247 TCCGCAGATCTTATAATTCCGG 57.812 45.455 0.00 0.00 34.86 5.14
5297 5766 3.576982 TCCGCAGATCTTATAATTCCGGT 59.423 43.478 0.00 0.00 35.09 5.28
5320 5789 1.745141 GCTGGTGGATAGCTGAACAGG 60.745 57.143 0.00 0.00 38.14 4.00
5323 5792 0.543749 GTGGATAGCTGAACAGGCCT 59.456 55.000 0.00 0.00 0.00 5.19
5324 5793 0.543277 TGGATAGCTGAACAGGCCTG 59.457 55.000 31.60 31.60 0.00 4.85
5326 5795 1.210478 GGATAGCTGAACAGGCCTGAA 59.790 52.381 39.19 21.56 0.00 3.02
5327 5796 2.356125 GGATAGCTGAACAGGCCTGAAA 60.356 50.000 39.19 21.20 0.00 2.69
5329 5798 2.299326 AGCTGAACAGGCCTGAAATT 57.701 45.000 39.19 22.97 0.00 1.82
5330 5799 2.165998 AGCTGAACAGGCCTGAAATTC 58.834 47.619 39.19 29.25 0.00 2.17
5331 5800 2.165998 GCTGAACAGGCCTGAAATTCT 58.834 47.619 39.19 13.13 0.00 2.40
5334 5803 4.553323 CTGAACAGGCCTGAAATTCTTTG 58.447 43.478 39.19 19.64 0.00 2.77
5337 5806 3.308401 ACAGGCCTGAAATTCTTTGGTT 58.692 40.909 39.19 8.95 0.00 3.67
5344 5813 4.774200 CCTGAAATTCTTTGGTTCCTGGAT 59.226 41.667 0.00 0.00 0.00 3.41
5345 5814 5.951747 CCTGAAATTCTTTGGTTCCTGGATA 59.048 40.000 0.00 0.00 0.00 2.59
5346 5815 6.127619 CCTGAAATTCTTTGGTTCCTGGATAC 60.128 42.308 0.00 0.00 0.00 2.24
5366 5835 9.967559 TGGATACATATGTACCCTATATGGATT 57.032 33.333 24.17 2.57 46.17 3.01
5440 5909 7.745620 AAAACTTGACCTTCCATTGTACTAG 57.254 36.000 0.00 0.00 0.00 2.57
5441 5910 6.435292 AACTTGACCTTCCATTGTACTAGT 57.565 37.500 0.00 0.00 0.00 2.57
5442 5911 7.549147 AACTTGACCTTCCATTGTACTAGTA 57.451 36.000 0.00 0.00 0.00 1.82
5443 5912 7.549147 ACTTGACCTTCCATTGTACTAGTAA 57.451 36.000 3.61 0.00 0.00 2.24
5444 5913 7.612677 ACTTGACCTTCCATTGTACTAGTAAG 58.387 38.462 3.61 0.00 0.00 2.34
5445 5914 7.453752 ACTTGACCTTCCATTGTACTAGTAAGA 59.546 37.037 3.61 0.00 0.00 2.10
5446 5915 7.786046 TGACCTTCCATTGTACTAGTAAGAA 57.214 36.000 3.61 1.15 0.00 2.52
5447 5916 8.197592 TGACCTTCCATTGTACTAGTAAGAAA 57.802 34.615 3.61 0.45 0.00 2.52
5448 5917 8.653191 TGACCTTCCATTGTACTAGTAAGAAAA 58.347 33.333 3.61 0.00 0.00 2.29
5449 5918 9.152595 GACCTTCCATTGTACTAGTAAGAAAAG 57.847 37.037 3.61 4.51 0.00 2.27
5450 5919 8.657712 ACCTTCCATTGTACTAGTAAGAAAAGT 58.342 33.333 3.61 2.14 0.00 2.66
5451 5920 9.503399 CCTTCCATTGTACTAGTAAGAAAAGTT 57.497 33.333 3.61 0.00 0.00 2.66
5514 5983 7.858052 AGACAAATTTTCAGTCAAAATAGCG 57.142 32.000 9.15 0.00 42.86 4.26
5515 5984 7.425606 AGACAAATTTTCAGTCAAAATAGCGT 58.574 30.769 9.15 0.00 42.86 5.07
5516 5985 7.379529 AGACAAATTTTCAGTCAAAATAGCGTG 59.620 33.333 9.15 0.00 42.86 5.34
5517 5986 7.199766 ACAAATTTTCAGTCAAAATAGCGTGA 58.800 30.769 0.00 0.00 42.86 4.35
5518 5987 7.704472 ACAAATTTTCAGTCAAAATAGCGTGAA 59.296 29.630 0.00 0.00 42.86 3.18
5519 5988 8.702438 CAAATTTTCAGTCAAAATAGCGTGAAT 58.298 29.630 0.00 0.00 42.86 2.57
5520 5989 9.906660 AAATTTTCAGTCAAAATAGCGTGAATA 57.093 25.926 0.00 0.00 42.86 1.75
5521 5990 9.559958 AATTTTCAGTCAAAATAGCGTGAATAG 57.440 29.630 0.00 0.00 42.86 1.73
5522 5991 7.667043 TTTCAGTCAAAATAGCGTGAATAGT 57.333 32.000 0.00 0.00 0.00 2.12
5523 5992 6.647212 TCAGTCAAAATAGCGTGAATAGTG 57.353 37.500 0.00 0.00 0.00 2.74
5524 5993 6.394809 TCAGTCAAAATAGCGTGAATAGTGA 58.605 36.000 0.00 0.00 0.00 3.41
5525 5994 6.310467 TCAGTCAAAATAGCGTGAATAGTGAC 59.690 38.462 0.00 0.00 34.46 3.67
5526 5995 5.581085 AGTCAAAATAGCGTGAATAGTGACC 59.419 40.000 0.00 0.00 34.73 4.02
5527 5996 5.581085 GTCAAAATAGCGTGAATAGTGACCT 59.419 40.000 0.00 0.00 0.00 3.85
5528 5997 6.755141 GTCAAAATAGCGTGAATAGTGACCTA 59.245 38.462 0.00 0.00 0.00 3.08
5529 5998 7.438459 GTCAAAATAGCGTGAATAGTGACCTAT 59.562 37.037 0.00 0.00 35.33 2.57
5530 5999 8.635328 TCAAAATAGCGTGAATAGTGACCTATA 58.365 33.333 0.00 0.00 32.57 1.31
5531 6000 9.256477 CAAAATAGCGTGAATAGTGACCTATAA 57.744 33.333 0.00 0.00 32.57 0.98
5532 6001 9.998106 AAAATAGCGTGAATAGTGACCTATAAT 57.002 29.630 0.00 0.00 32.57 1.28
5535 6004 6.622549 AGCGTGAATAGTGACCTATAATAGC 58.377 40.000 0.00 0.00 32.57 2.97
5536 6005 6.208797 AGCGTGAATAGTGACCTATAATAGCA 59.791 38.462 0.00 0.00 32.57 3.49
5537 6006 6.866770 GCGTGAATAGTGACCTATAATAGCAA 59.133 38.462 0.00 0.00 32.57 3.91
5538 6007 7.384115 GCGTGAATAGTGACCTATAATAGCAAA 59.616 37.037 0.00 0.00 32.57 3.68
5539 6008 9.424319 CGTGAATAGTGACCTATAATAGCAAAT 57.576 33.333 0.00 0.00 32.57 2.32
5558 6027 8.141835 AGCAAATAATTTTTGTCTTTTTCGCT 57.858 26.923 11.90 0.00 0.00 4.93
5559 6028 8.063630 AGCAAATAATTTTTGTCTTTTTCGCTG 58.936 29.630 11.90 0.00 0.00 5.18
5560 6029 7.850492 GCAAATAATTTTTGTCTTTTTCGCTGT 59.150 29.630 11.90 0.00 0.00 4.40
5561 6030 9.146270 CAAATAATTTTTGTCTTTTTCGCTGTG 57.854 29.630 0.00 0.00 0.00 3.66
5562 6031 8.641499 AATAATTTTTGTCTTTTTCGCTGTGA 57.359 26.923 0.00 0.00 0.00 3.58
5563 6032 6.959671 AATTTTTGTCTTTTTCGCTGTGAA 57.040 29.167 0.00 0.00 33.85 3.18
5564 6033 6.573617 ATTTTTGTCTTTTTCGCTGTGAAG 57.426 33.333 3.65 0.00 37.99 3.02
5565 6034 4.695217 TTTGTCTTTTTCGCTGTGAAGT 57.305 36.364 3.65 0.00 37.99 3.01
5566 6035 3.944422 TGTCTTTTTCGCTGTGAAGTC 57.056 42.857 3.65 0.00 37.99 3.01
5567 6036 3.266636 TGTCTTTTTCGCTGTGAAGTCA 58.733 40.909 3.65 0.00 37.99 3.41
5568 6037 3.687212 TGTCTTTTTCGCTGTGAAGTCAA 59.313 39.130 3.65 0.00 37.99 3.18
5569 6038 4.029043 GTCTTTTTCGCTGTGAAGTCAAC 58.971 43.478 3.65 0.00 37.99 3.18
5570 6039 2.730183 TTTTCGCTGTGAAGTCAACG 57.270 45.000 3.65 0.00 37.99 4.10
5571 6040 1.647346 TTTCGCTGTGAAGTCAACGT 58.353 45.000 3.65 0.00 37.99 3.99
5572 6041 2.495409 TTCGCTGTGAAGTCAACGTA 57.505 45.000 0.00 0.00 31.44 3.57
5573 6042 2.046283 TCGCTGTGAAGTCAACGTAG 57.954 50.000 0.00 0.00 0.00 3.51
5574 6043 2.223641 TTCGCTGTGAAGTCAACGTAGT 60.224 45.455 0.00 0.00 34.97 2.73
5575 6044 3.735820 TTCGCTGTGAAGTCAACGTAGTT 60.736 43.478 0.00 0.00 41.40 2.24
5576 6045 5.206474 TTCGCTGTGAAGTCAACGTAGTTT 61.206 41.667 0.00 0.00 39.64 2.66
5577 6046 6.960320 TTCGCTGTGAAGTCAACGTAGTTTC 61.960 44.000 0.00 0.00 39.64 2.78
5616 6085 9.760077 AATTTATATACTAGTGCGCAAGTAAGT 57.240 29.630 22.10 19.00 41.68 2.24
5617 6086 8.792831 TTTATATACTAGTGCGCAAGTAAGTC 57.207 34.615 22.10 5.00 41.68 3.01
5618 6087 4.713824 ATACTAGTGCGCAAGTAAGTCA 57.286 40.909 22.10 5.27 41.68 3.41
5619 6088 3.380479 ACTAGTGCGCAAGTAAGTCAA 57.620 42.857 14.00 0.00 41.68 3.18
5620 6089 3.318017 ACTAGTGCGCAAGTAAGTCAAG 58.682 45.455 14.00 1.66 41.68 3.02
5621 6090 2.240493 AGTGCGCAAGTAAGTCAAGT 57.760 45.000 14.00 0.00 41.68 3.16
5622 6091 2.561569 AGTGCGCAAGTAAGTCAAGTT 58.438 42.857 14.00 0.00 41.68 2.66
5623 6092 2.943033 AGTGCGCAAGTAAGTCAAGTTT 59.057 40.909 14.00 0.00 41.68 2.66
5624 6093 4.124238 AGTGCGCAAGTAAGTCAAGTTTA 58.876 39.130 14.00 0.00 41.68 2.01
5625 6094 4.755123 AGTGCGCAAGTAAGTCAAGTTTAT 59.245 37.500 14.00 0.00 41.68 1.40
5626 6095 5.238650 AGTGCGCAAGTAAGTCAAGTTTATT 59.761 36.000 14.00 0.00 41.68 1.40
5627 6096 5.564127 GTGCGCAAGTAAGTCAAGTTTATTC 59.436 40.000 14.00 0.00 41.68 1.75
5628 6097 5.468746 TGCGCAAGTAAGTCAAGTTTATTCT 59.531 36.000 8.16 0.00 41.68 2.40
5629 6098 6.647481 TGCGCAAGTAAGTCAAGTTTATTCTA 59.353 34.615 8.16 0.00 41.68 2.10
5630 6099 7.171848 TGCGCAAGTAAGTCAAGTTTATTCTAA 59.828 33.333 8.16 0.00 41.68 2.10
5631 6100 8.013378 GCGCAAGTAAGTCAAGTTTATTCTAAA 58.987 33.333 0.30 0.00 41.68 1.85
5632 6101 9.872757 CGCAAGTAAGTCAAGTTTATTCTAAAA 57.127 29.630 0.00 0.00 0.00 1.52
5713 6182 5.562298 GTACATATGTACCAGGGACCATT 57.438 43.478 28.48 0.00 43.73 3.16
5714 6183 4.706842 ACATATGTACCAGGGACCATTC 57.293 45.455 6.56 0.00 0.00 2.67
5715 6184 3.071023 ACATATGTACCAGGGACCATTCG 59.929 47.826 6.56 0.00 0.00 3.34
5716 6185 0.837272 ATGTACCAGGGACCATTCGG 59.163 55.000 0.00 0.00 38.77 4.30
5727 6196 2.729028 ACCATTCGGTATTTCCCCTG 57.271 50.000 0.00 0.00 46.71 4.45
5728 6197 1.214424 ACCATTCGGTATTTCCCCTGG 59.786 52.381 0.00 0.00 46.71 4.45
5729 6198 1.493022 CCATTCGGTATTTCCCCTGGA 59.507 52.381 0.00 0.00 31.23 3.86
5730 6199 2.092103 CCATTCGGTATTTCCCCTGGAA 60.092 50.000 0.00 0.00 40.27 3.53
5731 6200 3.214328 CATTCGGTATTTCCCCTGGAAG 58.786 50.000 0.00 0.00 43.06 3.46
5732 6201 1.961133 TCGGTATTTCCCCTGGAAGT 58.039 50.000 0.00 0.00 43.06 3.01
5733 6202 2.271777 TCGGTATTTCCCCTGGAAGTT 58.728 47.619 0.00 0.00 43.06 2.66
5734 6203 2.026636 TCGGTATTTCCCCTGGAAGTTG 60.027 50.000 0.00 0.00 43.06 3.16
5735 6204 2.290705 CGGTATTTCCCCTGGAAGTTGT 60.291 50.000 0.00 0.00 43.06 3.32
5736 6205 3.774734 GGTATTTCCCCTGGAAGTTGTT 58.225 45.455 0.00 0.00 43.06 2.83
5737 6206 3.762288 GGTATTTCCCCTGGAAGTTGTTC 59.238 47.826 0.00 0.00 43.06 3.18
5738 6207 3.611025 ATTTCCCCTGGAAGTTGTTCA 57.389 42.857 0.00 0.00 43.06 3.18
5739 6208 3.611025 TTTCCCCTGGAAGTTGTTCAT 57.389 42.857 0.00 0.00 43.06 2.57
5740 6209 3.611025 TTCCCCTGGAAGTTGTTCATT 57.389 42.857 0.00 0.00 36.71 2.57
5741 6210 3.154827 TCCCCTGGAAGTTGTTCATTC 57.845 47.619 0.00 0.00 33.93 2.67
5742 6211 2.716424 TCCCCTGGAAGTTGTTCATTCT 59.284 45.455 0.00 0.00 33.93 2.40
5743 6212 2.821969 CCCCTGGAAGTTGTTCATTCTG 59.178 50.000 0.00 0.00 33.93 3.02
5744 6213 3.498481 CCCCTGGAAGTTGTTCATTCTGA 60.498 47.826 0.00 0.00 33.93 3.27
5745 6214 4.338879 CCCTGGAAGTTGTTCATTCTGAT 58.661 43.478 0.00 0.00 33.93 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.734465 CGCAAGAAGGGTCATCTTCAC 59.266 52.381 7.26 0.00 44.01 3.18
1 2 2.099141 CGCAAGAAGGGTCATCTTCA 57.901 50.000 7.26 0.00 44.01 3.02
15 16 2.979813 GCATTGTAGGTTTTGTCGCAAG 59.020 45.455 0.00 0.00 0.00 4.01
16 17 2.603412 CGCATTGTAGGTTTTGTCGCAA 60.603 45.455 0.00 0.00 0.00 4.85
17 18 1.069568 CGCATTGTAGGTTTTGTCGCA 60.070 47.619 0.00 0.00 0.00 5.10
18 19 1.602191 CGCATTGTAGGTTTTGTCGC 58.398 50.000 0.00 0.00 0.00 5.19
19 20 1.533731 ACCGCATTGTAGGTTTTGTCG 59.466 47.619 0.98 0.00 37.49 4.35
26 27 1.211949 AGGCATAACCGCATTGTAGGT 59.788 47.619 0.98 0.98 46.52 3.08
27 28 1.873591 GAGGCATAACCGCATTGTAGG 59.126 52.381 0.00 0.00 46.52 3.18
28 29 2.838736 AGAGGCATAACCGCATTGTAG 58.161 47.619 0.00 0.00 46.52 2.74
29 30 4.141801 ACTTAGAGGCATAACCGCATTGTA 60.142 41.667 0.00 0.00 46.52 2.41
30 31 3.206150 CTTAGAGGCATAACCGCATTGT 58.794 45.455 0.00 0.00 46.52 2.71
31 32 3.206150 ACTTAGAGGCATAACCGCATTG 58.794 45.455 0.00 0.00 46.52 2.82
32 33 3.467803 GACTTAGAGGCATAACCGCATT 58.532 45.455 0.00 0.00 46.52 3.56
33 34 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
34 35 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
35 36 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
36 37 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
37 38 2.202566 GCACGACTTAGAGGCATAACC 58.797 52.381 0.00 0.00 39.61 2.85
38 39 2.159085 AGGCACGACTTAGAGGCATAAC 60.159 50.000 0.00 0.00 0.00 1.89
39 40 2.100916 GAGGCACGACTTAGAGGCATAA 59.899 50.000 0.00 0.00 0.00 1.90
40 41 1.681793 GAGGCACGACTTAGAGGCATA 59.318 52.381 0.00 0.00 0.00 3.14
41 42 0.461961 GAGGCACGACTTAGAGGCAT 59.538 55.000 0.00 0.00 0.00 4.40
42 43 1.890894 GAGGCACGACTTAGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
43 44 1.226717 CGAGGCACGACTTAGAGGC 60.227 63.158 0.00 0.00 45.77 4.70
44 45 2.478989 TCGAGGCACGACTTAGAGG 58.521 57.895 2.07 0.00 46.45 3.69
54 55 1.442857 CTCTCACGTGTCGAGGCAC 60.443 63.158 21.70 0.00 36.12 5.01
55 56 0.960861 ATCTCTCACGTGTCGAGGCA 60.961 55.000 25.80 15.03 0.00 4.75
56 57 1.015109 TATCTCTCACGTGTCGAGGC 58.985 55.000 25.80 0.00 0.00 4.70
57 58 3.120477 GCTATATCTCTCACGTGTCGAGG 60.120 52.174 25.80 16.08 0.00 4.63
58 59 3.743911 AGCTATATCTCTCACGTGTCGAG 59.256 47.826 22.74 22.74 0.00 4.04
59 60 3.495001 CAGCTATATCTCTCACGTGTCGA 59.505 47.826 16.51 12.23 0.00 4.20
60 61 3.804688 CAGCTATATCTCTCACGTGTCG 58.195 50.000 16.51 8.32 0.00 4.35
61 62 3.003793 TGCAGCTATATCTCTCACGTGTC 59.996 47.826 16.51 0.00 0.00 3.67
62 63 2.952310 TGCAGCTATATCTCTCACGTGT 59.048 45.455 16.51 0.00 0.00 4.49
63 64 3.632855 TGCAGCTATATCTCTCACGTG 57.367 47.619 9.94 9.94 0.00 4.49
64 65 3.120025 CGATGCAGCTATATCTCTCACGT 60.120 47.826 0.00 0.00 0.00 4.49
65 66 3.120025 ACGATGCAGCTATATCTCTCACG 60.120 47.826 0.00 0.00 0.00 4.35
66 67 4.165036 CACGATGCAGCTATATCTCTCAC 58.835 47.826 0.00 0.00 0.00 3.51
67 68 3.192212 CCACGATGCAGCTATATCTCTCA 59.808 47.826 0.00 0.00 0.00 3.27
68 69 3.428725 CCCACGATGCAGCTATATCTCTC 60.429 52.174 0.00 0.00 0.00 3.20
69 70 2.495270 CCCACGATGCAGCTATATCTCT 59.505 50.000 0.00 0.00 0.00 3.10
70 71 2.886081 CCCACGATGCAGCTATATCTC 58.114 52.381 0.00 0.00 0.00 2.75
71 72 1.066573 GCCCACGATGCAGCTATATCT 60.067 52.381 0.00 0.00 0.00 1.98
72 73 1.338105 TGCCCACGATGCAGCTATATC 60.338 52.381 0.00 0.00 34.05 1.63
73 74 0.686789 TGCCCACGATGCAGCTATAT 59.313 50.000 0.00 0.00 34.05 0.86
74 75 0.686789 ATGCCCACGATGCAGCTATA 59.313 50.000 0.00 0.00 42.92 1.31
75 76 0.179009 AATGCCCACGATGCAGCTAT 60.179 50.000 0.00 0.00 42.92 2.97
76 77 0.467804 TAATGCCCACGATGCAGCTA 59.532 50.000 0.00 0.00 42.92 3.32
77 78 1.097547 GTAATGCCCACGATGCAGCT 61.098 55.000 0.00 0.00 42.92 4.24
78 79 1.356624 GTAATGCCCACGATGCAGC 59.643 57.895 0.00 0.00 42.92 5.25
79 80 0.378257 GTGTAATGCCCACGATGCAG 59.622 55.000 0.00 0.00 42.92 4.41
80 81 1.029408 GGTGTAATGCCCACGATGCA 61.029 55.000 0.00 0.00 43.97 3.96
81 82 1.724582 GGGTGTAATGCCCACGATGC 61.725 60.000 0.00 0.00 45.40 3.91
82 83 2.404083 GGGTGTAATGCCCACGATG 58.596 57.895 0.00 0.00 45.40 3.84
83 84 4.977393 GGGTGTAATGCCCACGAT 57.023 55.556 0.00 0.00 45.40 3.73
88 89 2.601299 GGGGAGGGTGTAATGCCC 59.399 66.667 0.00 0.00 46.43 5.36
89 90 2.601299 GGGGGAGGGTGTAATGCC 59.399 66.667 0.00 0.00 0.00 4.40
113 114 3.681835 ACGCACCTGGAGGACGAC 61.682 66.667 16.25 0.00 39.97 4.34
119 120 1.807165 CATCGTCACGCACCTGGAG 60.807 63.158 0.00 0.00 0.00 3.86
140 141 0.973632 TGTACAGTCGCCCAGTGATT 59.026 50.000 0.00 0.00 0.00 2.57
146 147 4.367023 GCGGTGTACAGTCGCCCA 62.367 66.667 24.56 0.00 43.17 5.36
205 206 2.034066 TGGGAAAGAGCAAGGCGG 59.966 61.111 0.00 0.00 0.00 6.13
246 247 1.867166 GGTCGTGCTATAAGAAGCCC 58.133 55.000 0.00 0.00 42.05 5.19
247 248 1.202382 ACGGTCGTGCTATAAGAAGCC 60.202 52.381 0.00 0.00 42.05 4.35
298 299 1.594293 CAGAGGTTTCGTGTGCGGT 60.594 57.895 0.00 0.00 38.89 5.68
307 308 3.449018 TGAGTAGGAGCATCAGAGGTTTC 59.551 47.826 0.00 0.00 36.25 2.78
317 318 1.893137 TCGTTGTGTGAGTAGGAGCAT 59.107 47.619 0.00 0.00 0.00 3.79
332 333 2.332654 CCCGCCCTTTCCTTCGTTG 61.333 63.158 0.00 0.00 0.00 4.10
333 334 2.033602 CCCGCCCTTTCCTTCGTT 59.966 61.111 0.00 0.00 0.00 3.85
376 377 4.241555 ATCACGGGGATCCAGCGC 62.242 66.667 15.23 0.00 0.00 5.92
389 390 1.363744 CTTTCCTCGCCAGTGATCAC 58.636 55.000 18.47 18.47 0.00 3.06
397 398 1.615124 TCCATCCCTTTCCTCGCCA 60.615 57.895 0.00 0.00 0.00 5.69
399 400 1.524849 GCTCCATCCCTTTCCTCGC 60.525 63.158 0.00 0.00 0.00 5.03
401 402 1.147153 CGGCTCCATCCCTTTCCTC 59.853 63.158 0.00 0.00 0.00 3.71
420 421 1.670971 CGCAGCTTTGCATTTGCTCG 61.671 55.000 3.94 8.68 42.66 5.03
440 441 0.396435 ATGCGTCTCCACCTTTGTCA 59.604 50.000 0.00 0.00 0.00 3.58
445 446 1.742761 CATTCATGCGTCTCCACCTT 58.257 50.000 0.00 0.00 0.00 3.50
489 490 0.606604 TCTTTACTCCCCGTCACTGC 59.393 55.000 0.00 0.00 0.00 4.40
550 552 6.900194 TGACCTTATCTTTCTCCCCTATTTG 58.100 40.000 0.00 0.00 0.00 2.32
575 577 3.800863 GCGAGCGACTCTCCACGA 61.801 66.667 0.00 0.00 38.62 4.35
576 578 4.103103 TGCGAGCGACTCTCCACG 62.103 66.667 0.00 0.00 38.62 4.94
592 594 1.446792 ACGCCTGAATGCTCTCGTG 60.447 57.895 0.00 0.00 0.00 4.35
664 666 0.250081 GATGAGGCCCACGGATCTTC 60.250 60.000 0.00 0.00 0.00 2.87
904 943 2.358737 GGCGGGCCGATTGGATAG 60.359 66.667 33.44 0.00 37.49 2.08
923 962 1.262640 ACTAGTACTTGGTGGGCCCG 61.263 60.000 19.37 4.36 35.15 6.13
935 974 4.686554 CACCTGTTCTTCTTGCACTAGTAC 59.313 45.833 0.00 0.00 0.00 2.73
1167 1206 0.720590 GAGCGTAGAACTCGACGAGT 59.279 55.000 24.44 24.44 45.59 4.18
1237 1276 0.108804 CTACACAAGCACGTCGGGAT 60.109 55.000 0.00 0.00 0.00 3.85
1240 1279 1.070843 CAAACTACACAAGCACGTCGG 60.071 52.381 0.00 0.00 0.00 4.79
1389 1429 3.117701 AGCATCTAGACTGCTCTACTCCA 60.118 47.826 18.33 0.00 46.79 3.86
1446 1486 4.215399 CGTTTGTTTTAGCTCAAGATCCCA 59.785 41.667 0.00 0.00 0.00 4.37
1455 1495 3.437049 AGGCAGATCGTTTGTTTTAGCTC 59.563 43.478 0.00 0.00 0.00 4.09
1526 1566 9.875708 AACAGGCTAATACCAATTCCAATTATA 57.124 29.630 0.00 0.00 0.00 0.98
1528 1568 7.836685 TCAACAGGCTAATACCAATTCCAATTA 59.163 33.333 0.00 0.00 0.00 1.40
1609 1649 7.016153 TGTTTCTACTGTCATACCCAGATTT 57.984 36.000 0.00 0.00 34.04 2.17
1633 1673 2.172717 CCGAATCCCCAACCAGTAGATT 59.827 50.000 0.00 0.00 0.00 2.40
1634 1674 1.768870 CCGAATCCCCAACCAGTAGAT 59.231 52.381 0.00 0.00 0.00 1.98
1640 1680 0.995803 TTGATCCGAATCCCCAACCA 59.004 50.000 0.00 0.00 0.00 3.67
1644 1684 3.951563 AAGATTTGATCCGAATCCCCA 57.048 42.857 12.70 0.00 35.47 4.96
1647 1687 7.649306 CCACAAAATAAGATTTGATCCGAATCC 59.351 37.037 12.70 0.51 41.73 3.01
1653 1693 9.657419 AAATCACCACAAAATAAGATTTGATCC 57.343 29.630 6.76 0.00 41.73 3.36
1772 1814 8.964476 TTCTACCTTTGAATATGATCCAGAAC 57.036 34.615 0.00 0.00 0.00 3.01
1803 1845 1.334869 GTCCTGACACACAAAGCCAAG 59.665 52.381 0.00 0.00 0.00 3.61
1934 1976 3.753272 TCAACAGCTCTTGCCTTTCATAC 59.247 43.478 0.00 0.00 40.80 2.39
1938 1980 1.068679 GCTCAACAGCTCTTGCCTTTC 60.069 52.381 0.00 0.00 43.09 2.62
2383 2470 6.216569 TGTACAAAACACTTTCAAAAGCACA 58.783 32.000 0.00 0.00 39.63 4.57
2509 2596 2.672961 TCGCAGTCAACCTGGATAAG 57.327 50.000 0.00 0.00 41.81 1.73
2510 2597 2.499693 TCATCGCAGTCAACCTGGATAA 59.500 45.455 0.00 0.00 41.81 1.75
2774 2861 4.157656 GCATGGCTGGAAAATGTACTACAA 59.842 41.667 0.00 0.00 0.00 2.41
2934 3022 2.817258 GTGCCACCACATTGCTTAAGTA 59.183 45.455 4.02 0.00 41.67 2.24
2987 3075 7.437713 ACTGAAGATGAATGGTACCAATAGA 57.562 36.000 20.76 3.60 0.00 1.98
3021 3109 5.358160 AGCAGCCTTTCCAGTATTAAATGTC 59.642 40.000 0.00 0.00 0.00 3.06
3025 3113 4.016444 CCAGCAGCCTTTCCAGTATTAAA 58.984 43.478 0.00 0.00 0.00 1.52
3070 3158 9.944376 AGAGACGCCAACATATACATATAAATT 57.056 29.630 0.00 0.00 0.00 1.82
3090 3180 7.072030 CAGGAGTAAAACAAAAATGAGAGACG 58.928 38.462 0.00 0.00 0.00 4.18
3197 3287 1.670811 ACAACACTTGAAGGAACTGCG 59.329 47.619 0.00 0.00 36.15 5.18
3245 3335 4.340950 TCTTTGGTTTCATCAAGGACAACC 59.659 41.667 0.00 0.00 37.92 3.77
3354 3453 6.198650 TGGCACTTGATGAAATTATGTCTG 57.801 37.500 0.00 0.00 0.00 3.51
3355 3454 7.414222 AATGGCACTTGATGAAATTATGTCT 57.586 32.000 0.00 0.00 0.00 3.41
3502 3601 5.757850 ACAAACTTGAGTTAGAAAGCTGG 57.242 39.130 0.00 0.00 37.25 4.85
3600 3699 3.254166 CAGCCAAGCTTGTGTATTTGTCT 59.746 43.478 24.35 6.70 36.40 3.41
3707 3814 4.283212 GGTCTTCCATTTGGGTTCATTCAA 59.717 41.667 0.00 0.00 38.11 2.69
3972 4082 3.008485 CCTCTGAAGTAAGCTGACCCTTT 59.992 47.826 0.00 0.00 0.00 3.11
4018 4128 2.561478 TTCACCCAGCTTACTTCCAC 57.439 50.000 0.00 0.00 0.00 4.02
4059 4169 3.016736 ACAGAAATTGCAACGGATAGGG 58.983 45.455 0.00 0.00 0.00 3.53
4060 4170 4.273480 CCTACAGAAATTGCAACGGATAGG 59.727 45.833 0.00 5.17 0.00 2.57
4332 4443 5.945191 TGCAACATTCACATAGATCTTTCCA 59.055 36.000 0.00 0.00 0.00 3.53
4626 4737 6.606768 GGTACTGTTGTACTACTGACTACAC 58.393 44.000 18.26 9.03 46.04 2.90
4640 4751 2.032071 GGCAGGCGGTACTGTTGT 59.968 61.111 3.10 0.00 40.59 3.32
4651 4762 0.036022 ACTTCTCTCTTGTGGCAGGC 59.964 55.000 0.00 0.00 0.00 4.85
4794 4907 5.046448 TGCTAAAGTAAATCCCTGTAACCGA 60.046 40.000 0.00 0.00 0.00 4.69
4795 4908 5.180271 TGCTAAAGTAAATCCCTGTAACCG 58.820 41.667 0.00 0.00 0.00 4.44
4910 5026 2.549754 AGCAAACTTTCACGTCCATCAG 59.450 45.455 0.00 0.00 0.00 2.90
4951 5067 6.936279 TCCTCAGACTGAAACCTATTTACTG 58.064 40.000 6.61 0.00 0.00 2.74
4952 5068 6.954684 TCTCCTCAGACTGAAACCTATTTACT 59.045 38.462 6.61 0.00 0.00 2.24
4953 5069 7.171630 TCTCCTCAGACTGAAACCTATTTAC 57.828 40.000 6.61 0.00 0.00 2.01
4954 5070 7.979786 ATCTCCTCAGACTGAAACCTATTTA 57.020 36.000 6.61 0.00 0.00 1.40
4978 5096 6.403866 AATTGCCAATTCAAGTGACAACTA 57.596 33.333 0.00 0.00 34.77 2.24
4994 5113 2.030371 TGCAGTCTGTTGAAATTGCCA 58.970 42.857 0.93 0.00 0.00 4.92
4995 5114 2.798976 TGCAGTCTGTTGAAATTGCC 57.201 45.000 0.93 0.00 0.00 4.52
4996 5115 4.026310 CAGTTTGCAGTCTGTTGAAATTGC 60.026 41.667 0.93 0.00 0.00 3.56
5022 5142 7.096065 GCAGTATTGAATTTTTGCGAAAGTCTT 60.096 33.333 12.10 3.50 0.00 3.01
5025 5145 6.215845 AGCAGTATTGAATTTTTGCGAAAGT 58.784 32.000 0.00 0.00 36.70 2.66
5026 5146 6.695292 AGCAGTATTGAATTTTTGCGAAAG 57.305 33.333 0.00 0.00 36.70 2.62
5027 5147 6.922957 AGAAGCAGTATTGAATTTTTGCGAAA 59.077 30.769 0.00 0.00 36.70 3.46
5045 5169 0.784778 GAACAACGGACGAGAAGCAG 59.215 55.000 0.00 0.00 0.00 4.24
5046 5170 0.103390 TGAACAACGGACGAGAAGCA 59.897 50.000 0.00 0.00 0.00 3.91
5047 5171 1.429463 ATGAACAACGGACGAGAAGC 58.571 50.000 0.00 0.00 0.00 3.86
5048 5172 4.090066 CAGTAATGAACAACGGACGAGAAG 59.910 45.833 0.00 0.00 0.00 2.85
5050 5174 3.571571 CAGTAATGAACAACGGACGAGA 58.428 45.455 0.00 0.00 0.00 4.04
5051 5175 2.092211 GCAGTAATGAACAACGGACGAG 59.908 50.000 0.00 0.00 0.00 4.18
5053 5177 2.066262 AGCAGTAATGAACAACGGACG 58.934 47.619 0.00 0.00 0.00 4.79
5054 5178 2.806244 ACAGCAGTAATGAACAACGGAC 59.194 45.455 0.00 0.00 0.00 4.79
5055 5179 2.805671 CACAGCAGTAATGAACAACGGA 59.194 45.455 0.00 0.00 0.00 4.69
5057 5181 3.363970 GGTCACAGCAGTAATGAACAACG 60.364 47.826 0.00 0.00 30.08 4.10
5058 5182 3.058224 GGGTCACAGCAGTAATGAACAAC 60.058 47.826 0.00 0.00 31.33 3.32
5060 5184 2.105649 TGGGTCACAGCAGTAATGAACA 59.894 45.455 0.00 0.00 31.33 3.18
5061 5185 2.484264 GTGGGTCACAGCAGTAATGAAC 59.516 50.000 0.00 0.00 34.08 3.18
5062 5186 2.105649 TGTGGGTCACAGCAGTAATGAA 59.894 45.455 0.00 0.00 39.62 2.57
5064 5188 2.183478 TGTGGGTCACAGCAGTAATG 57.817 50.000 0.00 0.00 39.62 1.90
5065 5189 2.949177 TTGTGGGTCACAGCAGTAAT 57.051 45.000 0.97 0.00 45.39 1.89
5066 5190 2.503331 CATTGTGGGTCACAGCAGTAA 58.497 47.619 0.97 0.00 45.39 2.24
5069 5193 0.538057 ACCATTGTGGGTCACAGCAG 60.538 55.000 0.52 0.00 45.39 4.24
5070 5194 1.536180 ACCATTGTGGGTCACAGCA 59.464 52.632 0.52 0.00 45.39 4.41
5077 5201 0.677731 CGCAGATGACCATTGTGGGT 60.678 55.000 0.52 0.00 43.37 4.51
5078 5202 1.378882 CCGCAGATGACCATTGTGGG 61.379 60.000 0.52 8.81 43.37 4.61
5079 5203 0.677731 ACCGCAGATGACCATTGTGG 60.678 55.000 16.09 16.09 45.61 4.17
5080 5204 0.729116 GACCGCAGATGACCATTGTG 59.271 55.000 0.00 0.00 0.00 3.33
5081 5205 0.740868 CGACCGCAGATGACCATTGT 60.741 55.000 0.00 0.00 0.00 2.71
5082 5206 1.431488 CCGACCGCAGATGACCATTG 61.431 60.000 0.00 0.00 0.00 2.82
5083 5207 1.153369 CCGACCGCAGATGACCATT 60.153 57.895 0.00 0.00 0.00 3.16
5085 5209 2.994995 ACCGACCGCAGATGACCA 60.995 61.111 0.00 0.00 0.00 4.02
5086 5210 2.202756 GACCGACCGCAGATGACC 60.203 66.667 0.00 0.00 0.00 4.02
5087 5211 1.078759 CAAGACCGACCGCAGATGAC 61.079 60.000 0.00 0.00 0.00 3.06
5088 5212 1.215382 CAAGACCGACCGCAGATGA 59.785 57.895 0.00 0.00 0.00 2.92
5089 5213 0.172578 TACAAGACCGACCGCAGATG 59.827 55.000 0.00 0.00 0.00 2.90
5090 5214 0.456221 CTACAAGACCGACCGCAGAT 59.544 55.000 0.00 0.00 0.00 2.90
5091 5215 0.892358 ACTACAAGACCGACCGCAGA 60.892 55.000 0.00 0.00 0.00 4.26
5092 5216 0.038526 AACTACAAGACCGACCGCAG 60.039 55.000 0.00 0.00 0.00 5.18
5094 5218 1.012486 CCAACTACAAGACCGACCGC 61.012 60.000 0.00 0.00 0.00 5.68
5096 5220 0.036671 CCCCAACTACAAGACCGACC 60.037 60.000 0.00 0.00 0.00 4.79
5097 5221 0.672711 GCCCCAACTACAAGACCGAC 60.673 60.000 0.00 0.00 0.00 4.79
5098 5222 1.122632 TGCCCCAACTACAAGACCGA 61.123 55.000 0.00 0.00 0.00 4.69
5099 5223 0.250553 TTGCCCCAACTACAAGACCG 60.251 55.000 0.00 0.00 0.00 4.79
5100 5224 2.215942 ATTGCCCCAACTACAAGACC 57.784 50.000 0.00 0.00 0.00 3.85
5102 5226 1.892474 GCAATTGCCCCAACTACAAGA 59.108 47.619 20.06 0.00 34.31 3.02
5103 5227 1.617850 TGCAATTGCCCCAACTACAAG 59.382 47.619 26.94 0.00 41.18 3.16
5104 5228 1.617850 CTGCAATTGCCCCAACTACAA 59.382 47.619 26.94 3.83 41.18 2.41
5116 5297 4.357142 AGCTTAATTCATCGCTGCAATTG 58.643 39.130 0.00 0.00 0.00 2.32
5119 5300 3.009026 TGAGCTTAATTCATCGCTGCAA 58.991 40.909 0.00 0.00 31.96 4.08
5122 5303 5.383130 CATCATGAGCTTAATTCATCGCTG 58.617 41.667 0.09 0.00 33.14 5.18
5198 5392 1.202382 GCGGACGGACTATTAAGCACT 60.202 52.381 0.00 0.00 0.00 4.40
5200 5394 1.066605 GAGCGGACGGACTATTAAGCA 59.933 52.381 0.00 0.00 0.00 3.91
5201 5395 1.602416 GGAGCGGACGGACTATTAAGC 60.602 57.143 0.00 0.00 0.00 3.09
5202 5396 1.679680 TGGAGCGGACGGACTATTAAG 59.320 52.381 0.00 0.00 0.00 1.85
5203 5397 1.679680 CTGGAGCGGACGGACTATTAA 59.320 52.381 0.00 0.00 0.00 1.40
5205 5399 0.395311 TCTGGAGCGGACGGACTATT 60.395 55.000 0.00 0.00 0.00 1.73
5206 5400 1.102222 GTCTGGAGCGGACGGACTAT 61.102 60.000 9.21 0.00 40.30 2.12
5213 5673 2.183046 GCTGAGTCTGGAGCGGAC 59.817 66.667 0.00 0.00 39.81 4.79
5274 5743 4.039973 ACCGGAATTATAAGATCTGCGGAA 59.960 41.667 9.46 0.00 0.00 4.30
5277 5746 4.556233 TCACCGGAATTATAAGATCTGCG 58.444 43.478 9.46 0.00 0.00 5.18
5285 5754 3.433031 CCACCAGCTCACCGGAATTATAA 60.433 47.826 9.46 0.00 0.00 0.98
5295 5764 0.179062 CAGCTATCCACCAGCTCACC 60.179 60.000 0.00 0.00 46.37 4.02
5296 5765 0.826715 TCAGCTATCCACCAGCTCAC 59.173 55.000 0.00 0.00 46.37 3.51
5297 5766 1.208052 GTTCAGCTATCCACCAGCTCA 59.792 52.381 0.00 0.00 46.37 4.26
5320 5789 3.306294 CCAGGAACCAAAGAATTTCAGGC 60.306 47.826 0.00 0.00 35.03 4.85
5323 5792 6.310941 TGTATCCAGGAACCAAAGAATTTCA 58.689 36.000 0.00 0.00 35.03 2.69
5324 5793 6.834168 TGTATCCAGGAACCAAAGAATTTC 57.166 37.500 0.00 0.00 35.03 2.17
5326 5795 8.061304 ACATATGTATCCAGGAACCAAAGAATT 58.939 33.333 6.56 0.00 0.00 2.17
5327 5796 7.586349 ACATATGTATCCAGGAACCAAAGAAT 58.414 34.615 6.56 0.00 0.00 2.40
5329 5798 6.575244 ACATATGTATCCAGGAACCAAAGA 57.425 37.500 6.56 0.00 0.00 2.52
5330 5799 6.710744 GGTACATATGTATCCAGGAACCAAAG 59.289 42.308 18.27 0.00 32.54 2.77
5331 5800 6.597562 GGTACATATGTATCCAGGAACCAAA 58.402 40.000 18.27 0.00 32.54 3.28
5415 5884 7.778382 ACTAGTACAATGGAAGGTCAAGTTTTT 59.222 33.333 0.00 0.00 0.00 1.94
5416 5885 7.287810 ACTAGTACAATGGAAGGTCAAGTTTT 58.712 34.615 0.00 0.00 0.00 2.43
5417 5886 6.838382 ACTAGTACAATGGAAGGTCAAGTTT 58.162 36.000 0.00 0.00 0.00 2.66
5418 5887 6.435292 ACTAGTACAATGGAAGGTCAAGTT 57.565 37.500 0.00 0.00 0.00 2.66
5419 5888 7.453752 TCTTACTAGTACAATGGAAGGTCAAGT 59.546 37.037 0.91 0.00 0.00 3.16
5420 5889 7.837863 TCTTACTAGTACAATGGAAGGTCAAG 58.162 38.462 0.91 0.00 0.00 3.02
5421 5890 7.786046 TCTTACTAGTACAATGGAAGGTCAA 57.214 36.000 0.91 0.00 0.00 3.18
5422 5891 7.786046 TTCTTACTAGTACAATGGAAGGTCA 57.214 36.000 0.91 0.00 0.00 4.02
5423 5892 9.152595 CTTTTCTTACTAGTACAATGGAAGGTC 57.847 37.037 0.91 0.00 0.00 3.85
5424 5893 8.657712 ACTTTTCTTACTAGTACAATGGAAGGT 58.342 33.333 0.91 0.00 0.00 3.50
5425 5894 9.503399 AACTTTTCTTACTAGTACAATGGAAGG 57.497 33.333 0.91 0.00 0.00 3.46
5488 5957 8.755018 CGCTATTTTGACTGAAAATTTGTCTTT 58.245 29.630 8.19 0.00 40.73 2.52
5489 5958 7.920682 ACGCTATTTTGACTGAAAATTTGTCTT 59.079 29.630 8.19 0.00 40.73 3.01
5490 5959 7.379529 CACGCTATTTTGACTGAAAATTTGTCT 59.620 33.333 8.19 0.00 40.73 3.41
5491 5960 7.378461 TCACGCTATTTTGACTGAAAATTTGTC 59.622 33.333 0.00 0.00 40.73 3.18
5492 5961 7.199766 TCACGCTATTTTGACTGAAAATTTGT 58.800 30.769 0.00 0.00 40.73 2.83
5493 5962 7.621832 TCACGCTATTTTGACTGAAAATTTG 57.378 32.000 0.00 0.00 40.73 2.32
5494 5963 8.816640 ATTCACGCTATTTTGACTGAAAATTT 57.183 26.923 0.00 0.00 40.73 1.82
5495 5964 9.559958 CTATTCACGCTATTTTGACTGAAAATT 57.440 29.630 0.00 0.00 40.73 1.82
5496 5965 8.730680 ACTATTCACGCTATTTTGACTGAAAAT 58.269 29.630 0.00 0.00 44.77 1.82
5497 5966 8.015087 CACTATTCACGCTATTTTGACTGAAAA 58.985 33.333 0.00 0.00 37.93 2.29
5498 5967 7.386573 TCACTATTCACGCTATTTTGACTGAAA 59.613 33.333 0.00 0.00 0.00 2.69
5499 5968 6.871492 TCACTATTCACGCTATTTTGACTGAA 59.129 34.615 0.00 0.00 0.00 3.02
5500 5969 6.310467 GTCACTATTCACGCTATTTTGACTGA 59.690 38.462 0.00 0.00 0.00 3.41
5501 5970 6.455646 GGTCACTATTCACGCTATTTTGACTG 60.456 42.308 0.00 0.00 33.05 3.51
5502 5971 5.581085 GGTCACTATTCACGCTATTTTGACT 59.419 40.000 0.00 0.00 33.05 3.41
5503 5972 5.581085 AGGTCACTATTCACGCTATTTTGAC 59.419 40.000 0.00 0.00 0.00 3.18
5504 5973 5.730550 AGGTCACTATTCACGCTATTTTGA 58.269 37.500 0.00 0.00 0.00 2.69
5505 5974 7.715265 ATAGGTCACTATTCACGCTATTTTG 57.285 36.000 0.00 0.00 36.51 2.44
5506 5975 9.998106 ATTATAGGTCACTATTCACGCTATTTT 57.002 29.630 0.00 0.00 40.35 1.82
5509 5978 8.407064 GCTATTATAGGTCACTATTCACGCTAT 58.593 37.037 1.12 0.00 40.35 2.97
5510 5979 7.392393 TGCTATTATAGGTCACTATTCACGCTA 59.608 37.037 1.12 0.00 40.35 4.26
5511 5980 6.208797 TGCTATTATAGGTCACTATTCACGCT 59.791 38.462 1.12 0.00 40.35 5.07
5512 5981 6.387465 TGCTATTATAGGTCACTATTCACGC 58.613 40.000 1.12 0.00 40.35 5.34
5513 5982 8.812147 TTTGCTATTATAGGTCACTATTCACG 57.188 34.615 1.12 0.00 40.35 4.35
5532 6001 9.255304 AGCGAAAAAGACAAAAATTATTTGCTA 57.745 25.926 10.89 0.00 32.93 3.49
5533 6002 8.063630 CAGCGAAAAAGACAAAAATTATTTGCT 58.936 29.630 10.89 0.00 32.93 3.91
5534 6003 7.850492 ACAGCGAAAAAGACAAAAATTATTTGC 59.150 29.630 10.89 0.00 32.93 3.68
5535 6004 9.146270 CACAGCGAAAAAGACAAAAATTATTTG 57.854 29.630 9.92 9.92 35.64 2.32
5536 6005 9.092876 TCACAGCGAAAAAGACAAAAATTATTT 57.907 25.926 0.00 0.00 0.00 1.40
5537 6006 8.641499 TCACAGCGAAAAAGACAAAAATTATT 57.359 26.923 0.00 0.00 0.00 1.40
5538 6007 8.641499 TTCACAGCGAAAAAGACAAAAATTAT 57.359 26.923 0.00 0.00 0.00 1.28
5539 6008 7.757624 ACTTCACAGCGAAAAAGACAAAAATTA 59.242 29.630 0.00 0.00 31.71 1.40
5540 6009 6.589907 ACTTCACAGCGAAAAAGACAAAAATT 59.410 30.769 0.00 0.00 31.71 1.82
5541 6010 6.099341 ACTTCACAGCGAAAAAGACAAAAAT 58.901 32.000 0.00 0.00 31.71 1.82
5542 6011 5.465935 ACTTCACAGCGAAAAAGACAAAAA 58.534 33.333 0.00 0.00 31.71 1.94
5543 6012 5.054390 ACTTCACAGCGAAAAAGACAAAA 57.946 34.783 0.00 0.00 31.71 2.44
5544 6013 4.155099 TGACTTCACAGCGAAAAAGACAAA 59.845 37.500 0.00 0.00 31.71 2.83
5545 6014 3.687212 TGACTTCACAGCGAAAAAGACAA 59.313 39.130 0.00 0.00 31.71 3.18
5546 6015 3.266636 TGACTTCACAGCGAAAAAGACA 58.733 40.909 0.00 0.00 31.71 3.41
5547 6016 3.944422 TGACTTCACAGCGAAAAAGAC 57.056 42.857 0.00 0.00 31.71 3.01
5548 6017 3.242284 CGTTGACTTCACAGCGAAAAAGA 60.242 43.478 0.00 0.00 44.63 2.52
5549 6018 3.029074 CGTTGACTTCACAGCGAAAAAG 58.971 45.455 0.00 0.00 44.63 2.27
5550 6019 2.417239 ACGTTGACTTCACAGCGAAAAA 59.583 40.909 11.22 0.00 44.63 1.94
5551 6020 2.004017 ACGTTGACTTCACAGCGAAAA 58.996 42.857 11.22 0.00 44.63 2.29
5552 6021 1.647346 ACGTTGACTTCACAGCGAAA 58.353 45.000 11.22 0.00 44.63 3.46
5553 6022 2.223641 ACTACGTTGACTTCACAGCGAA 60.224 45.455 3.44 0.00 44.63 4.70
5554 6023 1.335810 ACTACGTTGACTTCACAGCGA 59.664 47.619 3.44 0.00 44.63 4.93
5555 6024 1.767289 ACTACGTTGACTTCACAGCG 58.233 50.000 3.44 0.00 46.51 5.18
5556 6025 3.802685 AGAAACTACGTTGACTTCACAGC 59.197 43.478 3.44 0.00 0.00 4.40
5557 6026 5.968387 AAGAAACTACGTTGACTTCACAG 57.032 39.130 3.44 0.00 0.00 3.66
5558 6027 6.730960 AAAAGAAACTACGTTGACTTCACA 57.269 33.333 3.44 0.00 0.00 3.58
5590 6059 9.760077 ACTTACTTGCGCACTAGTATATAAATT 57.240 29.630 19.70 1.85 34.71 1.82
5591 6060 9.408069 GACTTACTTGCGCACTAGTATATAAAT 57.592 33.333 19.70 0.27 34.71 1.40
5592 6061 8.407832 TGACTTACTTGCGCACTAGTATATAAA 58.592 33.333 19.70 8.11 34.71 1.40
5593 6062 7.933396 TGACTTACTTGCGCACTAGTATATAA 58.067 34.615 19.70 8.42 34.71 0.98
5594 6063 7.500720 TGACTTACTTGCGCACTAGTATATA 57.499 36.000 19.70 7.22 34.71 0.86
5595 6064 6.387041 TGACTTACTTGCGCACTAGTATAT 57.613 37.500 19.70 12.35 34.71 0.86
5596 6065 5.823209 TGACTTACTTGCGCACTAGTATA 57.177 39.130 19.70 11.39 34.71 1.47
5597 6066 4.713824 TGACTTACTTGCGCACTAGTAT 57.286 40.909 19.70 8.54 34.71 2.12
5598 6067 4.022589 ACTTGACTTACTTGCGCACTAGTA 60.023 41.667 11.12 14.33 33.72 1.82
5599 6068 3.243771 ACTTGACTTACTTGCGCACTAGT 60.244 43.478 18.09 18.09 35.90 2.57
5600 6069 3.318017 ACTTGACTTACTTGCGCACTAG 58.682 45.455 11.12 8.97 0.00 2.57
5601 6070 3.380479 ACTTGACTTACTTGCGCACTA 57.620 42.857 11.12 0.00 0.00 2.74
5602 6071 2.240493 ACTTGACTTACTTGCGCACT 57.760 45.000 11.12 0.00 0.00 4.40
5603 6072 3.334272 AAACTTGACTTACTTGCGCAC 57.666 42.857 11.12 0.00 0.00 5.34
5604 6073 5.468746 AGAATAAACTTGACTTACTTGCGCA 59.531 36.000 5.66 5.66 0.00 6.09
5605 6074 5.928153 AGAATAAACTTGACTTACTTGCGC 58.072 37.500 0.00 0.00 0.00 6.09
5606 6075 9.872757 TTTTAGAATAAACTTGACTTACTTGCG 57.127 29.630 0.00 0.00 0.00 4.85
5692 6161 4.282449 CGAATGGTCCCTGGTACATATGTA 59.718 45.833 11.62 11.62 38.20 2.29
5693 6162 3.071023 CGAATGGTCCCTGGTACATATGT 59.929 47.826 13.93 13.93 38.20 2.29
5694 6163 3.557054 CCGAATGGTCCCTGGTACATATG 60.557 52.174 0.00 0.00 38.20 1.78
5695 6164 2.637872 CCGAATGGTCCCTGGTACATAT 59.362 50.000 0.00 0.00 38.20 1.78
5696 6165 2.043992 CCGAATGGTCCCTGGTACATA 58.956 52.381 0.00 0.00 38.20 2.29
5697 6166 0.837272 CCGAATGGTCCCTGGTACAT 59.163 55.000 0.00 0.00 38.20 2.29
5698 6167 2.292866 CCGAATGGTCCCTGGTACA 58.707 57.895 0.00 0.00 0.00 2.90
5707 6176 6.454393 TTCCAGGGGAAATACCGAATGGTC 62.454 50.000 0.00 0.00 41.11 4.02
5708 6177 4.661745 TTCCAGGGGAAATACCGAATGGT 61.662 47.826 0.00 0.00 44.75 3.55
5709 6178 1.493022 TCCAGGGGAAATACCGAATGG 59.507 52.381 0.00 0.00 40.11 3.16
5710 6179 3.214328 CTTCCAGGGGAAATACCGAATG 58.786 50.000 0.00 0.00 41.54 2.67
5711 6180 2.850568 ACTTCCAGGGGAAATACCGAAT 59.149 45.455 0.00 0.00 41.54 3.34
5712 6181 2.271777 ACTTCCAGGGGAAATACCGAA 58.728 47.619 0.00 0.00 41.54 4.30
5713 6182 1.961133 ACTTCCAGGGGAAATACCGA 58.039 50.000 0.00 0.00 41.54 4.69
5714 6183 2.290705 ACAACTTCCAGGGGAAATACCG 60.291 50.000 0.00 0.00 41.54 4.02
5715 6184 3.451402 ACAACTTCCAGGGGAAATACC 57.549 47.619 0.00 0.00 41.54 2.73
5716 6185 4.403734 TGAACAACTTCCAGGGGAAATAC 58.596 43.478 0.00 0.00 41.54 1.89
5717 6186 4.733077 TGAACAACTTCCAGGGGAAATA 57.267 40.909 0.00 0.00 41.54 1.40
5718 6187 3.611025 TGAACAACTTCCAGGGGAAAT 57.389 42.857 0.00 0.00 41.54 2.17
5719 6188 3.611025 ATGAACAACTTCCAGGGGAAA 57.389 42.857 0.00 0.00 41.54 3.13
5720 6189 3.140144 AGAATGAACAACTTCCAGGGGAA 59.860 43.478 0.00 0.00 39.66 3.97
5721 6190 2.716424 AGAATGAACAACTTCCAGGGGA 59.284 45.455 0.00 0.00 0.00 4.81
5722 6191 2.821969 CAGAATGAACAACTTCCAGGGG 59.178 50.000 0.00 0.00 39.69 4.79
5723 6192 3.754965 TCAGAATGAACAACTTCCAGGG 58.245 45.455 0.00 0.00 45.97 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.