Multiple sequence alignment - TraesCS1D01G105500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G105500 chr1D 100.000 4930 0 0 1 4930 97529260 97534189 0.000000e+00 9105.0
1 TraesCS1D01G105500 chr1D 81.964 499 64 20 2976 3459 97531876 97532363 2.760000e-107 399.0
2 TraesCS1D01G105500 chr1D 81.964 499 64 20 2617 3104 97532235 97532718 2.760000e-107 399.0
3 TraesCS1D01G105500 chr1D 97.436 117 3 0 3322 3438 481832427 481832311 3.010000e-47 200.0
4 TraesCS1D01G105500 chr1D 94.000 100 5 1 2964 3063 481832427 481832329 3.070000e-32 150.0
5 TraesCS1D01G105500 chr1B 93.532 3556 148 46 726 4234 155751417 155747897 0.000000e+00 5217.0
6 TraesCS1D01G105500 chr1B 92.049 327 16 6 4612 4930 155747486 155747162 7.530000e-123 451.0
7 TraesCS1D01G105500 chr1B 82.435 501 59 19 2977 3462 155749522 155749036 1.280000e-110 411.0
8 TraesCS1D01G105500 chr1B 81.727 498 65 22 2617 3107 155749167 155748689 4.630000e-105 392.0
9 TraesCS1D01G105500 chr1B 90.141 213 17 4 3324 3534 656678680 656678890 1.750000e-69 274.0
10 TraesCS1D01G105500 chr1B 89.623 212 19 3 3324 3534 656848983 656848774 2.930000e-67 267.0
11 TraesCS1D01G105500 chr1B 88.889 126 11 3 2966 3091 656678680 656678802 8.550000e-33 152.0
12 TraesCS1D01G105500 chr1B 88.889 126 11 3 2966 3091 656848983 656848861 8.550000e-33 152.0
13 TraesCS1D01G105500 chr1B 86.239 109 11 2 2776 2880 155748638 155748530 1.120000e-21 115.0
14 TraesCS1D01G105500 chr1B 86.000 100 12 1 3136 3233 155748629 155748530 6.750000e-19 106.0
15 TraesCS1D01G105500 chr1A 88.809 3887 258 77 295 4123 92564231 92567998 0.000000e+00 4604.0
16 TraesCS1D01G105500 chr1A 80.156 640 75 36 2617 3233 92566885 92567495 9.800000e-117 431.0
17 TraesCS1D01G105500 chr1A 81.837 490 57 24 2976 3459 92566550 92567013 2.780000e-102 383.0
18 TraesCS1D01G105500 chr1A 92.903 155 11 0 21 175 92118596 92118750 4.970000e-55 226.0
19 TraesCS1D01G105500 chr1A 91.200 125 11 0 171 295 92473923 92474047 2.360000e-38 171.0
20 TraesCS1D01G105500 chr1A 83.486 109 14 2 2776 2880 92567387 92567495 1.130000e-16 99.0
21 TraesCS1D01G105500 chr6B 93.721 860 44 5 884 1742 616721590 616722440 0.000000e+00 1280.0
22 TraesCS1D01G105500 chr6B 94.157 445 24 2 1298 1742 39920973 39921415 0.000000e+00 676.0
23 TraesCS1D01G105500 chr6B 91.111 90 1 2 966 1054 39920898 39920981 1.120000e-21 115.0
24 TraesCS1D01G105500 chr7B 93.140 860 49 4 884 1742 424958761 424959611 0.000000e+00 1253.0
25 TraesCS1D01G105500 chr7B 95.109 777 30 3 966 1742 624781689 624782457 0.000000e+00 1218.0
26 TraesCS1D01G105500 chr7B 76.493 804 121 40 3128 3920 1836732 1837478 4.660000e-100 375.0
27 TraesCS1D01G105500 chr7B 78.284 571 87 30 3123 3678 1833639 1834187 2.840000e-87 333.0
28 TraesCS1D01G105500 chr7B 92.641 231 14 1 1515 1742 325185284 325185054 3.680000e-86 329.0
29 TraesCS1D01G105500 chr7B 82.278 316 44 10 2773 3084 1833643 1833950 3.780000e-66 263.0
30 TraesCS1D01G105500 chr6D 81.046 306 48 7 219 521 464222019 464222317 8.250000e-58 235.0
31 TraesCS1D01G105500 chr7D 97.561 41 1 0 2777 2817 530404373 530404413 2.460000e-08 71.3
32 TraesCS1D01G105500 chr7D 97.436 39 1 0 3132 3170 530404375 530404413 3.180000e-07 67.6
33 TraesCS1D01G105500 chr3A 94.737 38 2 0 378 415 105076495 105076532 5.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G105500 chr1D 97529260 97534189 4929 False 3301.000000 9105 87.976000 1 4930 3 chr1D.!!$F1 4929
1 TraesCS1D01G105500 chr1B 155747162 155751417 4255 True 1115.333333 5217 86.997000 726 4930 6 chr1B.!!$R1 4204
2 TraesCS1D01G105500 chr1A 92564231 92567998 3767 False 1379.250000 4604 83.572000 295 4123 4 chr1A.!!$F3 3828
3 TraesCS1D01G105500 chr6B 616721590 616722440 850 False 1280.000000 1280 93.721000 884 1742 1 chr6B.!!$F1 858
4 TraesCS1D01G105500 chr6B 39920898 39921415 517 False 395.500000 676 92.634000 966 1742 2 chr6B.!!$F2 776
5 TraesCS1D01G105500 chr7B 424958761 424959611 850 False 1253.000000 1253 93.140000 884 1742 1 chr7B.!!$F1 858
6 TraesCS1D01G105500 chr7B 624781689 624782457 768 False 1218.000000 1218 95.109000 966 1742 1 chr7B.!!$F2 776
7 TraesCS1D01G105500 chr7B 1833639 1837478 3839 False 323.666667 375 79.018333 2773 3920 3 chr7B.!!$F3 1147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 562 0.035534 ATCACACATGTAAGGCGCCA 60.036 50.0 31.54 8.23 0.00 5.69 F
587 590 0.317519 GTGCAGGTAACCAAACACGC 60.318 55.0 0.00 0.00 37.17 5.34 F
2060 2115 0.178068 GACAGCGAGGGCAAGGATTA 59.822 55.0 0.00 0.00 43.41 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2115 0.033796 CACTCCCCACCAGCATTGAT 60.034 55.000 0.0 0.0 0.00 2.57 R
2387 2451 0.610232 ATGAAGTTCCAGGCAGGCAC 60.610 55.000 0.0 0.0 37.29 5.01 R
3958 6820 1.891919 GAACAACAGCCGCTCCACA 60.892 57.895 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.826674 CCAATAGTTGGTGGATGGGT 57.173 50.000 0.54 0.00 45.93 4.51
53 54 2.654863 CCAATAGTTGGTGGATGGGTC 58.345 52.381 0.54 0.00 45.93 4.46
54 55 2.242196 CCAATAGTTGGTGGATGGGTCT 59.758 50.000 0.54 0.00 45.93 3.85
55 56 3.309121 CCAATAGTTGGTGGATGGGTCTT 60.309 47.826 0.54 0.00 45.93 3.01
56 57 3.652057 ATAGTTGGTGGATGGGTCTTG 57.348 47.619 0.00 0.00 0.00 3.02
57 58 0.251341 AGTTGGTGGATGGGTCTTGC 60.251 55.000 0.00 0.00 0.00 4.01
58 59 0.539438 GTTGGTGGATGGGTCTTGCA 60.539 55.000 0.00 0.00 0.00 4.08
59 60 0.251297 TTGGTGGATGGGTCTTGCAG 60.251 55.000 0.00 0.00 0.00 4.41
60 61 2.048603 GGTGGATGGGTCTTGCAGC 61.049 63.158 0.00 0.00 0.00 5.25
61 62 2.046023 TGGATGGGTCTTGCAGCG 60.046 61.111 0.00 0.00 0.00 5.18
62 63 2.825836 GGATGGGTCTTGCAGCGG 60.826 66.667 0.00 0.00 0.00 5.52
63 64 2.045926 GATGGGTCTTGCAGCGGT 60.046 61.111 0.00 0.00 0.00 5.68
64 65 2.360350 ATGGGTCTTGCAGCGGTG 60.360 61.111 10.98 10.98 0.00 4.94
65 66 2.803155 GATGGGTCTTGCAGCGGTGA 62.803 60.000 20.69 0.15 0.00 4.02
66 67 3.050275 GGGTCTTGCAGCGGTGAC 61.050 66.667 20.69 10.41 0.00 3.67
67 68 2.280797 GGTCTTGCAGCGGTGACA 60.281 61.111 20.69 13.08 0.00 3.58
68 69 2.607892 GGTCTTGCAGCGGTGACAC 61.608 63.158 20.69 7.88 0.00 3.67
69 70 1.595382 GTCTTGCAGCGGTGACACT 60.595 57.895 20.69 0.00 0.00 3.55
70 71 1.300931 TCTTGCAGCGGTGACACTC 60.301 57.895 20.69 0.00 0.00 3.51
71 72 1.301244 CTTGCAGCGGTGACACTCT 60.301 57.895 20.69 0.41 0.00 3.24
72 73 0.882042 CTTGCAGCGGTGACACTCTT 60.882 55.000 20.69 0.00 0.00 2.85
73 74 0.391228 TTGCAGCGGTGACACTCTTA 59.609 50.000 20.69 0.00 0.00 2.10
74 75 0.391228 TGCAGCGGTGACACTCTTAA 59.609 50.000 20.69 0.00 0.00 1.85
75 76 0.790814 GCAGCGGTGACACTCTTAAC 59.209 55.000 20.69 0.00 0.00 2.01
76 77 1.605712 GCAGCGGTGACACTCTTAACT 60.606 52.381 20.69 0.00 0.00 2.24
77 78 2.352421 GCAGCGGTGACACTCTTAACTA 60.352 50.000 20.69 0.00 0.00 2.24
78 79 3.502920 CAGCGGTGACACTCTTAACTAG 58.497 50.000 9.50 0.00 0.00 2.57
79 80 2.094649 AGCGGTGACACTCTTAACTAGC 60.095 50.000 5.39 0.00 0.00 3.42
80 81 2.352421 GCGGTGACACTCTTAACTAGCA 60.352 50.000 5.39 0.00 0.00 3.49
81 82 3.243336 CGGTGACACTCTTAACTAGCAC 58.757 50.000 5.39 0.00 0.00 4.40
82 83 3.305131 CGGTGACACTCTTAACTAGCACA 60.305 47.826 5.39 0.00 0.00 4.57
83 84 4.628074 GGTGACACTCTTAACTAGCACAA 58.372 43.478 5.39 0.00 0.00 3.33
84 85 4.686554 GGTGACACTCTTAACTAGCACAAG 59.313 45.833 5.39 0.00 0.00 3.16
85 86 4.686554 GTGACACTCTTAACTAGCACAAGG 59.313 45.833 0.00 0.00 0.00 3.61
86 87 3.665190 ACACTCTTAACTAGCACAAGGC 58.335 45.455 0.00 0.00 45.30 4.35
102 103 2.202932 GCGACCATGCCTCGTGAT 60.203 61.111 11.36 0.00 33.51 3.06
103 104 2.240500 GCGACCATGCCTCGTGATC 61.241 63.158 11.36 0.00 33.51 2.92
104 105 1.141665 CGACCATGCCTCGTGATCA 59.858 57.895 0.00 0.00 0.00 2.92
105 106 0.460109 CGACCATGCCTCGTGATCAA 60.460 55.000 0.00 0.00 0.00 2.57
106 107 1.807755 CGACCATGCCTCGTGATCAAT 60.808 52.381 0.00 0.00 0.00 2.57
107 108 2.292267 GACCATGCCTCGTGATCAATT 58.708 47.619 0.00 0.00 0.00 2.32
108 109 2.289002 GACCATGCCTCGTGATCAATTC 59.711 50.000 0.00 0.00 0.00 2.17
109 110 1.262417 CCATGCCTCGTGATCAATTCG 59.738 52.381 0.00 0.00 0.00 3.34
110 111 0.940126 ATGCCTCGTGATCAATTCGC 59.060 50.000 0.00 0.00 0.00 4.70
116 117 2.930168 GTGATCAATTCGCGTTGCC 58.070 52.632 5.77 0.69 0.00 4.52
117 118 0.167908 GTGATCAATTCGCGTTGCCA 59.832 50.000 5.77 3.35 0.00 4.92
118 119 1.093972 TGATCAATTCGCGTTGCCAT 58.906 45.000 5.77 0.00 0.00 4.40
119 120 1.202166 TGATCAATTCGCGTTGCCATG 60.202 47.619 5.77 0.00 0.00 3.66
120 121 0.526096 ATCAATTCGCGTTGCCATGC 60.526 50.000 5.77 0.00 0.00 4.06
121 122 2.160221 CAATTCGCGTTGCCATGCC 61.160 57.895 5.77 0.00 0.00 4.40
122 123 2.634476 AATTCGCGTTGCCATGCCA 61.634 52.632 5.77 0.00 0.00 4.92
123 124 2.546645 AATTCGCGTTGCCATGCCAG 62.547 55.000 5.77 0.00 0.00 4.85
126 127 3.142838 GCGTTGCCATGCCAGGAT 61.143 61.111 0.00 0.00 0.00 3.24
127 128 1.823470 GCGTTGCCATGCCAGGATA 60.823 57.895 0.00 0.00 0.00 2.59
128 129 1.383456 GCGTTGCCATGCCAGGATAA 61.383 55.000 0.00 0.00 0.00 1.75
129 130 1.102154 CGTTGCCATGCCAGGATAAA 58.898 50.000 0.00 0.00 0.00 1.40
130 131 1.202290 CGTTGCCATGCCAGGATAAAC 60.202 52.381 0.00 0.00 0.00 2.01
131 132 2.102578 GTTGCCATGCCAGGATAAACT 58.897 47.619 0.00 0.00 0.00 2.66
132 133 2.057137 TGCCATGCCAGGATAAACTC 57.943 50.000 0.00 0.00 0.00 3.01
133 134 1.322442 GCCATGCCAGGATAAACTCC 58.678 55.000 0.00 0.00 45.33 3.85
145 146 4.501071 GGATAAACTCCTTAACTGCGTCA 58.499 43.478 0.00 0.00 41.29 4.35
146 147 4.933400 GGATAAACTCCTTAACTGCGTCAA 59.067 41.667 0.00 0.00 41.29 3.18
147 148 5.063564 GGATAAACTCCTTAACTGCGTCAAG 59.936 44.000 0.00 0.00 41.29 3.02
148 149 8.309627 GGATAAACTCCTTAACTGCGTCAAGC 62.310 46.154 0.00 0.00 43.14 4.01
164 165 2.719979 GCATCGGCTGCCATTGAG 59.280 61.111 20.29 1.39 45.66 3.02
165 166 2.719979 CATCGGCTGCCATTGAGC 59.280 61.111 20.29 0.00 35.57 4.26
170 171 2.890371 GCTGCCATTGAGCCTTGG 59.110 61.111 0.00 0.00 36.03 3.61
171 172 1.980772 GCTGCCATTGAGCCTTGGT 60.981 57.895 0.00 0.00 35.34 3.67
172 173 1.888018 CTGCCATTGAGCCTTGGTG 59.112 57.895 0.00 0.00 35.34 4.17
173 174 0.609957 CTGCCATTGAGCCTTGGTGA 60.610 55.000 0.00 0.00 35.34 4.02
174 175 0.609957 TGCCATTGAGCCTTGGTGAG 60.610 55.000 0.00 0.00 35.34 3.51
175 176 1.941999 GCCATTGAGCCTTGGTGAGC 61.942 60.000 0.00 0.00 35.34 4.26
176 177 0.323178 CCATTGAGCCTTGGTGAGCT 60.323 55.000 0.00 0.00 43.55 4.09
177 178 1.065199 CCATTGAGCCTTGGTGAGCTA 60.065 52.381 0.00 0.00 40.11 3.32
178 179 2.618816 CCATTGAGCCTTGGTGAGCTAA 60.619 50.000 0.00 0.00 40.11 3.09
179 180 3.285484 CATTGAGCCTTGGTGAGCTAAT 58.715 45.455 0.00 0.00 40.11 1.73
180 181 4.454678 CATTGAGCCTTGGTGAGCTAATA 58.545 43.478 0.00 0.00 40.11 0.98
181 182 4.568072 TTGAGCCTTGGTGAGCTAATAA 57.432 40.909 0.00 0.00 40.11 1.40
182 183 4.568072 TGAGCCTTGGTGAGCTAATAAA 57.432 40.909 0.00 0.00 40.11 1.40
183 184 5.116084 TGAGCCTTGGTGAGCTAATAAAT 57.884 39.130 0.00 0.00 40.11 1.40
184 185 4.883585 TGAGCCTTGGTGAGCTAATAAATG 59.116 41.667 0.00 0.00 40.11 2.32
185 186 4.860022 AGCCTTGGTGAGCTAATAAATGT 58.140 39.130 0.00 0.00 37.64 2.71
186 187 4.884164 AGCCTTGGTGAGCTAATAAATGTC 59.116 41.667 0.00 0.00 37.64 3.06
187 188 4.640201 GCCTTGGTGAGCTAATAAATGTCA 59.360 41.667 0.00 0.00 0.00 3.58
188 189 5.125417 GCCTTGGTGAGCTAATAAATGTCAA 59.875 40.000 0.00 0.00 0.00 3.18
189 190 6.678900 GCCTTGGTGAGCTAATAAATGTCAAG 60.679 42.308 0.00 0.00 0.00 3.02
190 191 5.818136 TGGTGAGCTAATAAATGTCAAGC 57.182 39.130 0.00 0.00 0.00 4.01
191 192 5.500234 TGGTGAGCTAATAAATGTCAAGCT 58.500 37.500 0.00 0.00 45.82 3.74
192 193 5.355071 TGGTGAGCTAATAAATGTCAAGCTG 59.645 40.000 0.00 0.00 43.31 4.24
193 194 5.269313 GTGAGCTAATAAATGTCAAGCTGC 58.731 41.667 0.00 0.00 43.31 5.25
194 195 4.943093 TGAGCTAATAAATGTCAAGCTGCA 59.057 37.500 1.02 0.00 43.31 4.41
195 196 5.415389 TGAGCTAATAAATGTCAAGCTGCAA 59.585 36.000 1.02 0.00 43.31 4.08
196 197 6.095860 TGAGCTAATAAATGTCAAGCTGCAAT 59.904 34.615 1.02 0.00 43.31 3.56
197 198 6.501781 AGCTAATAAATGTCAAGCTGCAATC 58.498 36.000 1.02 0.00 41.78 2.67
198 199 5.689068 GCTAATAAATGTCAAGCTGCAATCC 59.311 40.000 1.02 0.00 0.00 3.01
199 200 4.660789 ATAAATGTCAAGCTGCAATCCC 57.339 40.909 1.02 0.00 0.00 3.85
200 201 1.927487 AATGTCAAGCTGCAATCCCA 58.073 45.000 1.02 0.00 0.00 4.37
201 202 1.927487 ATGTCAAGCTGCAATCCCAA 58.073 45.000 1.02 0.00 0.00 4.12
202 203 1.702182 TGTCAAGCTGCAATCCCAAA 58.298 45.000 1.02 0.00 0.00 3.28
203 204 2.250031 TGTCAAGCTGCAATCCCAAAT 58.750 42.857 1.02 0.00 0.00 2.32
204 205 3.429492 TGTCAAGCTGCAATCCCAAATA 58.571 40.909 1.02 0.00 0.00 1.40
205 206 3.193267 TGTCAAGCTGCAATCCCAAATAC 59.807 43.478 1.02 0.00 0.00 1.89
206 207 3.445096 GTCAAGCTGCAATCCCAAATACT 59.555 43.478 1.02 0.00 0.00 2.12
207 208 4.082026 GTCAAGCTGCAATCCCAAATACTT 60.082 41.667 1.02 0.00 0.00 2.24
208 209 4.082081 TCAAGCTGCAATCCCAAATACTTG 60.082 41.667 1.02 0.00 34.69 3.16
209 210 2.167075 AGCTGCAATCCCAAATACTTGC 59.833 45.455 1.02 0.00 43.25 4.01
212 213 4.126208 TGCAATCCCAAATACTTGCATG 57.874 40.909 4.81 0.00 46.43 4.06
213 214 3.118702 TGCAATCCCAAATACTTGCATGG 60.119 43.478 4.81 0.00 46.43 3.66
220 221 5.088680 CCAAATACTTGCATGGGAATTGT 57.911 39.130 4.44 0.00 0.00 2.71
221 222 5.111293 CCAAATACTTGCATGGGAATTGTC 58.889 41.667 4.44 0.00 0.00 3.18
222 223 5.105228 CCAAATACTTGCATGGGAATTGTCT 60.105 40.000 4.44 0.00 0.00 3.41
223 224 6.400568 CAAATACTTGCATGGGAATTGTCTT 58.599 36.000 4.44 0.00 0.00 3.01
224 225 7.363705 CCAAATACTTGCATGGGAATTGTCTTA 60.364 37.037 4.44 0.00 0.00 2.10
225 226 6.949352 ATACTTGCATGGGAATTGTCTTAG 57.051 37.500 4.44 0.00 0.00 2.18
226 227 4.666512 ACTTGCATGGGAATTGTCTTAGT 58.333 39.130 4.44 0.00 0.00 2.24
227 228 5.079643 ACTTGCATGGGAATTGTCTTAGTT 58.920 37.500 4.44 0.00 0.00 2.24
228 229 5.183904 ACTTGCATGGGAATTGTCTTAGTTC 59.816 40.000 4.44 0.00 0.00 3.01
229 230 3.689161 TGCATGGGAATTGTCTTAGTTCG 59.311 43.478 0.00 0.00 0.00 3.95
230 231 3.689649 GCATGGGAATTGTCTTAGTTCGT 59.310 43.478 0.00 0.00 0.00 3.85
231 232 4.873827 GCATGGGAATTGTCTTAGTTCGTA 59.126 41.667 0.00 0.00 0.00 3.43
232 233 5.527582 GCATGGGAATTGTCTTAGTTCGTAT 59.472 40.000 0.00 0.00 0.00 3.06
233 234 6.511767 GCATGGGAATTGTCTTAGTTCGTATG 60.512 42.308 0.00 0.00 0.00 2.39
234 235 6.288941 TGGGAATTGTCTTAGTTCGTATGA 57.711 37.500 0.00 0.00 0.00 2.15
235 236 6.884832 TGGGAATTGTCTTAGTTCGTATGAT 58.115 36.000 0.00 0.00 0.00 2.45
236 237 6.761242 TGGGAATTGTCTTAGTTCGTATGATG 59.239 38.462 0.00 0.00 0.00 3.07
237 238 6.292919 GGGAATTGTCTTAGTTCGTATGATGC 60.293 42.308 0.00 0.00 0.00 3.91
238 239 6.257849 GGAATTGTCTTAGTTCGTATGATGCA 59.742 38.462 0.00 0.00 0.00 3.96
239 240 6.589830 ATTGTCTTAGTTCGTATGATGCAC 57.410 37.500 0.00 0.00 0.00 4.57
240 241 5.324784 TGTCTTAGTTCGTATGATGCACT 57.675 39.130 0.00 0.00 0.00 4.40
241 242 5.102313 TGTCTTAGTTCGTATGATGCACTG 58.898 41.667 0.00 0.00 0.00 3.66
242 243 5.103000 GTCTTAGTTCGTATGATGCACTGT 58.897 41.667 0.00 0.00 0.00 3.55
243 244 5.577164 GTCTTAGTTCGTATGATGCACTGTT 59.423 40.000 0.00 0.00 0.00 3.16
244 245 6.090898 GTCTTAGTTCGTATGATGCACTGTTT 59.909 38.462 0.00 0.00 0.00 2.83
245 246 7.274904 GTCTTAGTTCGTATGATGCACTGTTTA 59.725 37.037 0.00 0.00 0.00 2.01
246 247 7.815549 TCTTAGTTCGTATGATGCACTGTTTAA 59.184 33.333 0.00 0.00 0.00 1.52
247 248 6.795098 AGTTCGTATGATGCACTGTTTAAA 57.205 33.333 0.00 0.00 0.00 1.52
248 249 7.377766 AGTTCGTATGATGCACTGTTTAAAT 57.622 32.000 0.00 0.00 0.00 1.40
249 250 8.487313 AGTTCGTATGATGCACTGTTTAAATA 57.513 30.769 0.00 0.00 0.00 1.40
250 251 8.604035 AGTTCGTATGATGCACTGTTTAAATAG 58.396 33.333 10.14 10.14 0.00 1.73
251 252 6.943981 TCGTATGATGCACTGTTTAAATAGC 58.056 36.000 11.49 4.86 0.00 2.97
252 253 6.536941 TCGTATGATGCACTGTTTAAATAGCA 59.463 34.615 11.49 9.83 36.34 3.49
253 254 7.226523 TCGTATGATGCACTGTTTAAATAGCAT 59.773 33.333 11.49 13.55 44.50 3.79
254 255 7.321984 CGTATGATGCACTGTTTAAATAGCATG 59.678 37.037 18.09 9.92 42.18 4.06
255 256 5.342433 TGATGCACTGTTTAAATAGCATGC 58.658 37.500 10.51 10.51 42.18 4.06
256 257 5.125900 TGATGCACTGTTTAAATAGCATGCT 59.874 36.000 25.99 25.99 42.18 3.79
257 258 6.318396 TGATGCACTGTTTAAATAGCATGCTA 59.682 34.615 28.72 28.72 42.18 3.49
258 259 6.507958 TGCACTGTTTAAATAGCATGCTAA 57.492 33.333 30.06 13.90 33.03 3.09
259 260 7.099266 TGCACTGTTTAAATAGCATGCTAAT 57.901 32.000 30.06 20.31 33.03 1.73
260 261 6.974048 TGCACTGTTTAAATAGCATGCTAATG 59.026 34.615 30.06 16.59 36.82 1.90
261 262 7.148103 TGCACTGTTTAAATAGCATGCTAATGA 60.148 33.333 30.06 13.75 35.67 2.57
262 263 7.864379 GCACTGTTTAAATAGCATGCTAATGAT 59.136 33.333 30.06 18.02 35.67 2.45
263 264 9.740239 CACTGTTTAAATAGCATGCTAATGATT 57.260 29.630 30.06 22.23 35.67 2.57
271 272 9.664332 AAATAGCATGCTAATGATTAGGAGTAG 57.336 33.333 30.06 6.75 37.01 2.57
272 273 6.047511 AGCATGCTAATGATTAGGAGTAGG 57.952 41.667 21.21 4.29 37.01 3.18
273 274 5.046014 AGCATGCTAATGATTAGGAGTAGGG 60.046 44.000 21.21 2.18 37.01 3.53
274 275 5.280215 GCATGCTAATGATTAGGAGTAGGGT 60.280 44.000 11.37 0.00 37.01 4.34
275 276 6.745474 GCATGCTAATGATTAGGAGTAGGGTT 60.745 42.308 11.37 0.00 37.01 4.11
276 277 7.527196 GCATGCTAATGATTAGGAGTAGGGTTA 60.527 40.741 11.37 0.00 37.01 2.85
277 278 7.540474 TGCTAATGATTAGGAGTAGGGTTAG 57.460 40.000 13.60 0.00 33.80 2.34
278 279 7.073854 TGCTAATGATTAGGAGTAGGGTTAGT 58.926 38.462 13.60 0.00 33.80 2.24
279 280 7.567622 TGCTAATGATTAGGAGTAGGGTTAGTT 59.432 37.037 13.60 0.00 33.80 2.24
280 281 7.873505 GCTAATGATTAGGAGTAGGGTTAGTTG 59.126 40.741 13.60 0.00 33.80 3.16
281 282 7.750947 AATGATTAGGAGTAGGGTTAGTTGT 57.249 36.000 0.00 0.00 0.00 3.32
282 283 6.540438 TGATTAGGAGTAGGGTTAGTTGTG 57.460 41.667 0.00 0.00 0.00 3.33
283 284 6.021030 TGATTAGGAGTAGGGTTAGTTGTGT 58.979 40.000 0.00 0.00 0.00 3.72
284 285 6.499350 TGATTAGGAGTAGGGTTAGTTGTGTT 59.501 38.462 0.00 0.00 0.00 3.32
285 286 4.618920 AGGAGTAGGGTTAGTTGTGTTG 57.381 45.455 0.00 0.00 0.00 3.33
286 287 3.971971 AGGAGTAGGGTTAGTTGTGTTGT 59.028 43.478 0.00 0.00 0.00 3.32
287 288 4.062991 GGAGTAGGGTTAGTTGTGTTGTG 58.937 47.826 0.00 0.00 0.00 3.33
288 289 4.443881 GGAGTAGGGTTAGTTGTGTTGTGT 60.444 45.833 0.00 0.00 0.00 3.72
289 290 5.106876 AGTAGGGTTAGTTGTGTTGTGTT 57.893 39.130 0.00 0.00 0.00 3.32
290 291 4.879545 AGTAGGGTTAGTTGTGTTGTGTTG 59.120 41.667 0.00 0.00 0.00 3.33
291 292 3.692690 AGGGTTAGTTGTGTTGTGTTGT 58.307 40.909 0.00 0.00 0.00 3.32
292 293 4.083565 AGGGTTAGTTGTGTTGTGTTGTT 58.916 39.130 0.00 0.00 0.00 2.83
293 294 4.157105 AGGGTTAGTTGTGTTGTGTTGTTC 59.843 41.667 0.00 0.00 0.00 3.18
308 309 5.049129 TGTGTTGTTCATATGCGATGTTTGA 60.049 36.000 0.00 0.00 0.00 2.69
332 333 2.499289 TGAAGTGTGTTGCATTTGGGTT 59.501 40.909 0.00 0.00 0.00 4.11
343 344 6.212388 TGTTGCATTTGGGTTATAAGGTCATT 59.788 34.615 0.00 0.00 0.00 2.57
366 367 9.781834 CATTATATTTAAAAACGGTGAGCAGAA 57.218 29.630 0.00 0.00 0.00 3.02
367 368 9.783256 ATTATATTTAAAAACGGTGAGCAGAAC 57.217 29.630 0.00 0.00 0.00 3.01
370 371 2.844122 AAAACGGTGAGCAGAACAAC 57.156 45.000 0.00 0.00 0.00 3.32
374 375 1.411246 ACGGTGAGCAGAACAACTACA 59.589 47.619 0.00 0.00 0.00 2.74
381 384 2.549754 AGCAGAACAACTACATGCACAC 59.450 45.455 0.00 0.00 39.34 3.82
384 387 4.282068 CAGAACAACTACATGCACACAAC 58.718 43.478 0.00 0.00 0.00 3.32
391 394 3.445450 ACTACATGCACACAACCAAACAA 59.555 39.130 0.00 0.00 0.00 2.83
416 419 1.153524 TTTGCATGTGCTCACCCCT 59.846 52.632 6.55 0.00 42.66 4.79
421 424 1.171308 CATGTGCTCACCCCTTGAAG 58.829 55.000 0.00 0.00 32.21 3.02
424 427 1.228245 TGCTCACCCCTTGAAGCAC 60.228 57.895 0.00 0.00 35.04 4.40
425 428 1.228245 GCTCACCCCTTGAAGCACA 60.228 57.895 0.00 0.00 32.21 4.57
430 433 3.420893 TCACCCCTTGAAGCACAAATAG 58.579 45.455 0.00 0.00 38.08 1.73
442 445 2.298729 GCACAAATAGAGGCCACCAAAA 59.701 45.455 5.01 0.00 0.00 2.44
444 447 4.559153 CACAAATAGAGGCCACCAAAAAG 58.441 43.478 5.01 0.00 0.00 2.27
448 451 0.971386 AGAGGCCACCAAAAAGCATG 59.029 50.000 5.01 0.00 0.00 4.06
461 464 2.119801 AAGCATGCCTAAGTCCACTG 57.880 50.000 15.66 0.00 0.00 3.66
462 465 1.279496 AGCATGCCTAAGTCCACTGA 58.721 50.000 15.66 0.00 0.00 3.41
463 466 1.842562 AGCATGCCTAAGTCCACTGAT 59.157 47.619 15.66 0.00 0.00 2.90
464 467 1.945394 GCATGCCTAAGTCCACTGATG 59.055 52.381 6.36 0.00 0.00 3.07
465 468 1.945394 CATGCCTAAGTCCACTGATGC 59.055 52.381 0.00 0.00 0.00 3.91
472 475 1.460504 AGTCCACTGATGCAATGCAG 58.539 50.000 14.98 11.60 43.65 4.41
488 491 0.512952 GCAGTGCAGACTACCAAACG 59.487 55.000 11.09 0.00 0.00 3.60
491 494 2.413112 CAGTGCAGACTACCAAACGATG 59.587 50.000 0.00 0.00 0.00 3.84
527 530 5.880054 TTTTGTCCTGCATTAGCTTAGTC 57.120 39.130 0.00 0.00 42.74 2.59
528 531 4.551702 TTGTCCTGCATTAGCTTAGTCA 57.448 40.909 0.00 0.00 42.74 3.41
529 532 4.128925 TGTCCTGCATTAGCTTAGTCAG 57.871 45.455 0.00 0.00 42.74 3.51
530 533 3.118629 TGTCCTGCATTAGCTTAGTCAGG 60.119 47.826 13.75 13.75 42.74 3.86
531 534 3.133003 GTCCTGCATTAGCTTAGTCAGGA 59.867 47.826 16.93 16.93 45.35 3.86
532 535 3.133003 TCCTGCATTAGCTTAGTCAGGAC 59.867 47.826 16.93 0.00 43.45 3.85
533 536 3.462021 CTGCATTAGCTTAGTCAGGACC 58.538 50.000 0.00 0.00 42.74 4.46
534 537 3.107601 TGCATTAGCTTAGTCAGGACCT 58.892 45.455 0.00 0.00 42.74 3.85
535 538 3.118629 TGCATTAGCTTAGTCAGGACCTG 60.119 47.826 15.99 15.99 42.74 4.00
536 539 3.118592 GCATTAGCTTAGTCAGGACCTGT 60.119 47.826 21.06 5.61 37.91 4.00
537 540 4.624125 GCATTAGCTTAGTCAGGACCTGTT 60.624 45.833 21.06 12.97 37.91 3.16
538 541 4.537135 TTAGCTTAGTCAGGACCTGTTG 57.463 45.455 21.06 8.97 32.61 3.33
539 542 2.609747 AGCTTAGTCAGGACCTGTTGA 58.390 47.619 21.06 7.14 32.61 3.18
540 543 2.972713 AGCTTAGTCAGGACCTGTTGAA 59.027 45.455 21.06 11.83 32.61 2.69
541 544 3.584848 AGCTTAGTCAGGACCTGTTGAAT 59.415 43.478 21.06 4.44 32.61 2.57
542 545 3.935828 GCTTAGTCAGGACCTGTTGAATC 59.064 47.826 21.06 5.89 32.61 2.52
543 546 4.563580 GCTTAGTCAGGACCTGTTGAATCA 60.564 45.833 21.06 0.00 32.61 2.57
544 547 3.409026 AGTCAGGACCTGTTGAATCAC 57.591 47.619 21.06 9.97 32.61 3.06
545 548 2.705658 AGTCAGGACCTGTTGAATCACA 59.294 45.455 21.06 0.00 32.61 3.58
555 558 4.379813 CCTGTTGAATCACACATGTAAGGC 60.380 45.833 0.00 0.00 0.00 4.35
559 562 0.035534 ATCACACATGTAAGGCGCCA 60.036 50.000 31.54 8.23 0.00 5.69
587 590 0.317519 GTGCAGGTAACCAAACACGC 60.318 55.000 0.00 0.00 37.17 5.34
588 591 1.284715 GCAGGTAACCAAACACGCC 59.715 57.895 0.00 0.00 37.17 5.68
596 599 3.706600 AACCAAACACGCCCTAGAATA 57.293 42.857 0.00 0.00 0.00 1.75
604 627 2.290641 CACGCCCTAGAATATTGCAACC 59.709 50.000 0.00 0.00 0.00 3.77
620 643 2.423538 GCAACCCACCTACAATTAGCAG 59.576 50.000 0.00 0.00 0.00 4.24
621 644 2.420058 ACCCACCTACAATTAGCAGC 57.580 50.000 0.00 0.00 0.00 5.25
628 651 5.414454 CCACCTACAATTAGCAGCAGTAAAA 59.586 40.000 0.00 0.00 0.00 1.52
692 715 1.429148 AAGGACATCGAATTCGCCGC 61.429 55.000 22.90 11.34 39.60 6.53
728 751 4.982916 TGAGTACAGAGTTTTTCGAGAAGC 59.017 41.667 0.00 0.00 0.00 3.86
746 769 1.068083 CCCCGGACATGATGAGTCG 59.932 63.158 0.73 0.00 36.87 4.18
770 796 3.056607 CCAACAGGAAAAAGCCCACATAG 60.057 47.826 0.00 0.00 0.00 2.23
835 861 1.269051 CCAAAAGCCCAAACGAGTCAC 60.269 52.381 0.00 0.00 0.00 3.67
852 878 2.363038 GTCACCAAAACCCTAAACACCC 59.637 50.000 0.00 0.00 0.00 4.61
1214 1257 1.332686 CGTCGTCCGATGATCCACTTA 59.667 52.381 2.81 0.00 39.56 2.24
1326 1369 0.771755 CTAGGTAGGCCCCCATTTCC 59.228 60.000 11.46 0.00 34.57 3.13
1341 1384 3.545124 TTCCCGTTGGATGCAGCGT 62.545 57.895 20.86 0.00 41.40 5.07
1359 1402 4.798907 CAGCGTTGTATAGTCTAGTGTTGG 59.201 45.833 0.00 0.00 0.00 3.77
1428 1482 2.957491 TTGTTGTGTTGCTTTCTGGG 57.043 45.000 0.00 0.00 0.00 4.45
1634 1688 6.040878 CGTAATCTAGTTGTAAGGTTCCCAG 58.959 44.000 0.00 0.00 0.00 4.45
1666 1720 8.721478 CATTAACCATGCTAATACTGATACCAC 58.279 37.037 0.00 0.00 0.00 4.16
1822 1876 1.207570 TGTAGTTTGTCACGTGGTGGT 59.792 47.619 17.00 0.00 33.87 4.16
1881 1936 6.662865 AATGTCCATCAGTCTAGGTCTATG 57.337 41.667 0.00 0.00 0.00 2.23
2023 2078 2.290960 GGTCCCAGCAATGAAGGTTACT 60.291 50.000 0.00 0.00 0.00 2.24
2060 2115 0.178068 GACAGCGAGGGCAAGGATTA 59.822 55.000 0.00 0.00 43.41 1.75
2101 2156 1.952296 CTCACTTTTGACCAGCTTGCT 59.048 47.619 0.00 0.00 0.00 3.91
2139 2194 2.882761 GGGAGAACACGGTAAGCTTTTT 59.117 45.455 3.20 0.00 0.00 1.94
2141 2196 3.297472 GAGAACACGGTAAGCTTTTTGC 58.703 45.455 3.20 0.00 43.29 3.68
2163 2218 4.725790 CCCCCTGATCTTTTGATTTGTC 57.274 45.455 0.00 0.00 39.67 3.18
2179 2234 4.870123 TTTGTCTATGCACTTGCCATTT 57.130 36.364 0.00 0.00 41.18 2.32
2200 2255 7.973944 CCATTTCTATGGTTAGCACTTTTAACC 59.026 37.037 7.13 7.13 45.34 2.85
2246 2301 9.586732 AGTGGTGCCATTATATTATGTTTATGT 57.413 29.630 1.35 0.00 0.00 2.29
2326 2381 4.594920 ACCCTTCTCATCATCCGTTATCAT 59.405 41.667 0.00 0.00 0.00 2.45
2346 2401 7.862512 ATCATTTTTCTTCAGAGAGGCTAAG 57.137 36.000 0.00 0.00 32.44 2.18
2387 2451 6.748333 ATGATGGAGTGTGATTAACTTGTG 57.252 37.500 0.00 0.00 0.00 3.33
2418 2483 7.094377 TGCCTGGAACTTCATTAGTATTTGAAC 60.094 37.037 0.00 0.00 35.54 3.18
2421 2486 8.025243 TGGAACTTCATTAGTATTTGAACGTC 57.975 34.615 0.00 0.00 35.54 4.34
2622 2689 3.321396 TGCATCCTGTTCTGAATTTTGCA 59.679 39.130 10.34 10.34 35.42 4.08
2631 2698 7.201522 CCTGTTCTGAATTTTGCAATGATGATG 60.202 37.037 0.00 0.00 0.00 3.07
2723 2790 7.934855 ATCTGAGCTCTTGATAATTGTTTGT 57.065 32.000 16.19 0.00 0.00 2.83
2727 2794 8.578308 TGAGCTCTTGATAATTGTTTGTTTTG 57.422 30.769 16.19 0.00 0.00 2.44
2731 2798 9.143631 GCTCTTGATAATTGTTTGTTTTGCTAT 57.856 29.630 0.00 0.00 0.00 2.97
2757 2824 9.853555 TTTTGACATGTTGGCATAAAGTATTAG 57.146 29.630 0.00 0.00 33.90 1.73
2887 2954 6.567959 TCTATCTGAGCAAACTATCTGTGTG 58.432 40.000 0.00 0.00 36.97 3.82
2973 3042 6.377996 TGGTGCTAGCATTTTGTCTTGATTAT 59.622 34.615 22.51 0.00 0.00 1.28
3283 6100 8.496707 AAGAGCATGAATTGTTTTTGTTTTCT 57.503 26.923 0.00 0.00 0.00 2.52
3284 6101 8.496707 AGAGCATGAATTGTTTTTGTTTTCTT 57.503 26.923 0.00 0.00 0.00 2.52
3285 6102 8.949177 AGAGCATGAATTGTTTTTGTTTTCTTT 58.051 25.926 0.00 0.00 0.00 2.52
3286 6103 8.898983 AGCATGAATTGTTTTTGTTTTCTTTG 57.101 26.923 0.00 0.00 0.00 2.77
3287 6104 7.485595 AGCATGAATTGTTTTTGTTTTCTTTGC 59.514 29.630 0.00 0.00 31.90 3.68
3490 6307 8.600449 CCTATAAAGGCTCTTCTATTCTTGTG 57.400 38.462 0.00 0.00 35.64 3.33
3492 6309 3.274095 AGGCTCTTCTATTCTTGTGGC 57.726 47.619 0.00 0.00 0.00 5.01
3493 6310 2.573462 AGGCTCTTCTATTCTTGTGGCA 59.427 45.455 0.00 0.00 0.00 4.92
3495 6312 3.376546 GGCTCTTCTATTCTTGTGGCAAG 59.623 47.826 2.71 2.71 0.00 4.01
3585 6406 4.253685 CTCTGTGGGTCGTTTGTGATATT 58.746 43.478 0.00 0.00 0.00 1.28
3707 6563 4.379302 ACTGGAGAAATCCTTTCAGCTT 57.621 40.909 2.76 0.00 42.10 3.74
3709 6565 4.522022 ACTGGAGAAATCCTTTCAGCTTTG 59.478 41.667 2.76 0.00 42.10 2.77
3721 6581 5.450412 CCTTTCAGCTTTGTTTCTTGTGCTA 60.450 40.000 0.00 0.00 0.00 3.49
3746 6608 5.105756 CCAGTTGTGGGGAATTCATTCTTAC 60.106 44.000 7.93 0.00 40.67 2.34
3958 6820 4.035208 CCTTTCTTGTTAGTCGCTGTTTGT 59.965 41.667 0.00 0.00 0.00 2.83
3992 6854 5.904941 TGTTGTTCTGTTTGAGCAATTGAT 58.095 33.333 10.34 1.34 45.19 2.57
4144 7006 2.350522 ACCAGTCATTGCTTAGCTTCG 58.649 47.619 5.60 0.00 0.00 3.79
4146 7008 2.350522 CAGTCATTGCTTAGCTTCGGT 58.649 47.619 5.60 0.00 0.00 4.69
4172 7042 0.810648 TTGCTTGGCGATGTCCATTC 59.189 50.000 0.00 0.00 35.77 2.67
4215 7086 2.656947 TTGGTTAGCTTCAGTGCCTT 57.343 45.000 0.00 0.00 0.00 4.35
4234 7106 4.624015 CCTTTGCAGATCTTTGCTTGAAA 58.376 39.130 8.27 1.04 44.38 2.69
4235 7107 5.051816 CCTTTGCAGATCTTTGCTTGAAAA 58.948 37.500 8.27 0.00 44.38 2.29
4280 7215 0.599991 TGCGTGCACGAATTCTGTCT 60.600 50.000 41.19 0.00 43.02 3.41
4281 7216 0.093705 GCGTGCACGAATTCTGTCTC 59.906 55.000 41.19 16.43 43.02 3.36
4282 7217 1.418373 CGTGCACGAATTCTGTCTCA 58.582 50.000 34.93 1.89 43.02 3.27
4283 7218 1.995484 CGTGCACGAATTCTGTCTCAT 59.005 47.619 34.93 0.00 43.02 2.90
4284 7219 2.222663 CGTGCACGAATTCTGTCTCATG 60.223 50.000 34.93 0.00 43.02 3.07
4285 7220 2.995939 GTGCACGAATTCTGTCTCATGA 59.004 45.455 0.00 0.00 0.00 3.07
4286 7221 3.061831 GTGCACGAATTCTGTCTCATGAG 59.938 47.826 17.07 17.07 0.00 2.90
4287 7222 2.030213 GCACGAATTCTGTCTCATGAGC 59.970 50.000 18.36 13.24 0.00 4.26
4288 7223 3.256558 CACGAATTCTGTCTCATGAGCA 58.743 45.455 18.36 16.86 0.00 4.26
4289 7224 3.869832 CACGAATTCTGTCTCATGAGCAT 59.130 43.478 18.36 4.52 0.00 3.79
4290 7225 4.025896 CACGAATTCTGTCTCATGAGCATC 60.026 45.833 18.36 11.64 0.00 3.91
4291 7226 4.141981 ACGAATTCTGTCTCATGAGCATCT 60.142 41.667 18.36 4.62 34.92 2.90
4292 7227 4.445052 CGAATTCTGTCTCATGAGCATCTC 59.555 45.833 18.36 11.00 34.92 2.75
4293 7228 5.603596 GAATTCTGTCTCATGAGCATCTCT 58.396 41.667 18.36 5.12 34.92 3.10
4306 7241 2.450500 AGCATCTCTACATCTCCCCTCT 59.549 50.000 0.00 0.00 0.00 3.69
4307 7242 2.562298 GCATCTCTACATCTCCCCTCTG 59.438 54.545 0.00 0.00 0.00 3.35
4324 7259 3.094572 CTCTGAAGGCCATTGGTTCATT 58.905 45.455 5.01 0.00 30.03 2.57
4325 7260 3.091545 TCTGAAGGCCATTGGTTCATTC 58.908 45.455 5.01 5.32 30.03 2.67
4351 7286 8.961634 CGATAGGATAGTCATAGGAAATGAGAA 58.038 37.037 0.00 0.00 0.00 2.87
4353 7288 7.552050 AGGATAGTCATAGGAAATGAGAAGG 57.448 40.000 0.00 0.00 0.00 3.46
4354 7289 6.013812 AGGATAGTCATAGGAAATGAGAAGGC 60.014 42.308 0.00 0.00 0.00 4.35
4356 7291 5.643421 AGTCATAGGAAATGAGAAGGCAT 57.357 39.130 0.00 0.00 0.00 4.40
4357 7292 5.374921 AGTCATAGGAAATGAGAAGGCATG 58.625 41.667 0.00 0.00 0.00 4.06
4359 7294 6.100279 AGTCATAGGAAATGAGAAGGCATGTA 59.900 38.462 0.00 0.00 0.00 2.29
4360 7295 6.939163 GTCATAGGAAATGAGAAGGCATGTAT 59.061 38.462 0.00 0.00 0.00 2.29
4361 7296 7.446625 GTCATAGGAAATGAGAAGGCATGTATT 59.553 37.037 0.00 0.00 0.00 1.89
4362 7297 8.000709 TCATAGGAAATGAGAAGGCATGTATTT 58.999 33.333 0.00 0.00 0.00 1.40
4363 7298 6.461110 AGGAAATGAGAAGGCATGTATTTG 57.539 37.500 0.00 0.00 0.00 2.32
4364 7299 6.189859 AGGAAATGAGAAGGCATGTATTTGA 58.810 36.000 0.00 0.00 0.00 2.69
4365 7300 6.664816 AGGAAATGAGAAGGCATGTATTTGAA 59.335 34.615 0.00 0.00 0.00 2.69
4366 7301 7.178983 AGGAAATGAGAAGGCATGTATTTGAAA 59.821 33.333 0.00 0.00 0.00 2.69
4367 7302 7.983484 GGAAATGAGAAGGCATGTATTTGAAAT 59.017 33.333 0.00 0.00 0.00 2.17
4368 7303 8.937634 AAATGAGAAGGCATGTATTTGAAATC 57.062 30.769 0.00 0.00 0.00 2.17
4369 7304 6.455360 TGAGAAGGCATGTATTTGAAATCC 57.545 37.500 0.00 0.00 0.00 3.01
4370 7305 6.189859 TGAGAAGGCATGTATTTGAAATCCT 58.810 36.000 0.00 0.00 0.00 3.24
4371 7306 7.345691 TGAGAAGGCATGTATTTGAAATCCTA 58.654 34.615 0.00 0.00 0.00 2.94
4372 7307 8.000709 TGAGAAGGCATGTATTTGAAATCCTAT 58.999 33.333 0.00 0.00 0.00 2.57
4373 7308 8.773033 AGAAGGCATGTATTTGAAATCCTATT 57.227 30.769 0.00 0.00 0.00 1.73
4378 7313 9.899226 GGCATGTATTTGAAATCCTATTAACTC 57.101 33.333 0.00 0.00 0.00 3.01
4399 7334 5.359194 TCGAATAGAGAAGATGCCCTTTT 57.641 39.130 0.00 0.00 34.68 2.27
4400 7335 5.360591 TCGAATAGAGAAGATGCCCTTTTC 58.639 41.667 0.00 0.00 36.54 2.29
4401 7336 5.129485 TCGAATAGAGAAGATGCCCTTTTCT 59.871 40.000 11.77 11.77 45.16 2.52
4402 7337 5.236047 CGAATAGAGAAGATGCCCTTTTCTG 59.764 44.000 15.00 0.84 43.63 3.02
4403 7338 5.965033 ATAGAGAAGATGCCCTTTTCTGA 57.035 39.130 15.00 4.77 43.63 3.27
4404 7339 4.647564 AGAGAAGATGCCCTTTTCTGAA 57.352 40.909 7.80 0.00 42.64 3.02
4405 7340 4.990526 AGAGAAGATGCCCTTTTCTGAAA 58.009 39.130 0.00 0.00 42.64 2.69
4406 7341 5.578073 AGAGAAGATGCCCTTTTCTGAAAT 58.422 37.500 3.31 0.00 42.64 2.17
4407 7342 6.015282 AGAGAAGATGCCCTTTTCTGAAATT 58.985 36.000 3.31 0.00 42.64 1.82
4408 7343 6.152492 AGAGAAGATGCCCTTTTCTGAAATTC 59.848 38.462 3.31 2.70 42.64 2.17
4409 7344 6.015282 AGAAGATGCCCTTTTCTGAAATTCT 58.985 36.000 3.31 4.86 34.68 2.40
4410 7345 7.177878 AGAAGATGCCCTTTTCTGAAATTCTA 58.822 34.615 3.31 0.00 34.68 2.10
4411 7346 7.838193 AGAAGATGCCCTTTTCTGAAATTCTAT 59.162 33.333 3.31 0.00 34.68 1.98
4412 7347 7.344095 AGATGCCCTTTTCTGAAATTCTATG 57.656 36.000 3.31 0.00 0.00 2.23
4413 7348 7.121382 AGATGCCCTTTTCTGAAATTCTATGA 58.879 34.615 3.31 0.00 0.00 2.15
4414 7349 7.783596 AGATGCCCTTTTCTGAAATTCTATGAT 59.216 33.333 3.31 0.00 0.00 2.45
4415 7350 7.722949 TGCCCTTTTCTGAAATTCTATGATT 57.277 32.000 3.31 0.00 0.00 2.57
4416 7351 8.821686 TGCCCTTTTCTGAAATTCTATGATTA 57.178 30.769 3.31 0.00 0.00 1.75
4417 7352 8.906867 TGCCCTTTTCTGAAATTCTATGATTAG 58.093 33.333 3.31 0.00 0.00 1.73
4418 7353 8.355913 GCCCTTTTCTGAAATTCTATGATTAGG 58.644 37.037 3.31 3.80 0.00 2.69
4419 7354 9.632638 CCCTTTTCTGAAATTCTATGATTAGGA 57.367 33.333 3.31 0.00 0.00 2.94
4494 7429 9.700831 AGTCTAGGCCAATGTTTATTTTCTTAT 57.299 29.630 5.01 0.00 0.00 1.73
4495 7430 9.736023 GTCTAGGCCAATGTTTATTTTCTTATG 57.264 33.333 5.01 0.00 0.00 1.90
4496 7431 9.693739 TCTAGGCCAATGTTTATTTTCTTATGA 57.306 29.630 5.01 0.00 0.00 2.15
4506 7441 9.703892 TGTTTATTTTCTTATGAAATGTGTGGG 57.296 29.630 4.77 0.00 41.24 4.61
4514 7449 9.699410 TTCTTATGAAATGTGTGGGATAGAAAT 57.301 29.630 0.00 0.00 0.00 2.17
4546 7481 6.968248 TCTATAGGGATAGGAATGGCTCAAAT 59.032 38.462 0.00 0.00 36.45 2.32
4560 7495 8.726870 AATGGCTCAAATGAATTTTTCCTATG 57.273 30.769 0.00 0.00 0.00 2.23
4564 7499 7.281549 GGCTCAAATGAATTTTTCCTATGCAAT 59.718 33.333 0.00 0.00 0.00 3.56
4577 7512 6.037786 TCCTATGCAATTCTTATCCTACGG 57.962 41.667 0.00 0.00 0.00 4.02
4675 7657 3.764885 ACACTGCACAGTTTGAACTTC 57.235 42.857 0.00 0.00 40.20 3.01
4677 7659 3.375299 ACACTGCACAGTTTGAACTTCTC 59.625 43.478 0.00 0.00 40.20 2.87
4680 7662 3.466836 TGCACAGTTTGAACTTCTCGAT 58.533 40.909 0.00 0.00 37.08 3.59
4694 7676 0.526524 CTCGATGACGCAACTCCCTC 60.527 60.000 0.00 0.00 39.58 4.30
4696 7678 0.108615 CGATGACGCAACTCCCTCTT 60.109 55.000 0.00 0.00 0.00 2.85
4699 7681 3.738281 CGATGACGCAACTCCCTCTTATT 60.738 47.826 0.00 0.00 0.00 1.40
4707 7689 7.155328 ACGCAACTCCCTCTTATTCATATTAG 58.845 38.462 0.00 0.00 0.00 1.73
4726 7711 9.847706 CATATTAGATTGTCGCTGACTTAGTAT 57.152 33.333 9.49 3.27 33.15 2.12
4774 7759 9.571804 GAACATCATTTCAAATTCAACGAAAAG 57.428 29.630 0.00 0.00 32.76 2.27
4840 7825 1.814292 AAAGCCACCCCATCCCACAT 61.814 55.000 0.00 0.00 0.00 3.21
4841 7826 0.923729 AAGCCACCCCATCCCACATA 60.924 55.000 0.00 0.00 0.00 2.29
4842 7827 0.702356 AGCCACCCCATCCCACATAT 60.702 55.000 0.00 0.00 0.00 1.78
4853 7838 8.894592 ACCCCATCCCACATATATATATTCATC 58.105 37.037 2.28 0.00 0.00 2.92
4881 7866 8.650143 AAGAAACATGAATTTACCACTACCAT 57.350 30.769 0.00 0.00 0.00 3.55
4882 7867 9.747898 AAGAAACATGAATTTACCACTACCATA 57.252 29.630 0.00 0.00 0.00 2.74
4883 7868 9.174166 AGAAACATGAATTTACCACTACCATAC 57.826 33.333 0.00 0.00 0.00 2.39
4884 7869 8.871629 AAACATGAATTTACCACTACCATACA 57.128 30.769 0.00 0.00 0.00 2.29
4893 7883 2.170607 CCACTACCATACAAGGGGTGAG 59.829 54.545 0.00 0.00 38.14 3.51
4927 7917 2.161012 GCCGATAGCATCCATGAACATG 59.839 50.000 7.70 7.70 42.97 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.331616 ACTATTGGTGCTTGACCCCC 59.668 55.000 0.00 0.00 45.45 5.40
22 23 1.818674 CAACTATTGGTGCTTGACCCC 59.181 52.381 0.00 0.00 45.45 4.95
23 24 1.818674 CCAACTATTGGTGCTTGACCC 59.181 52.381 0.00 0.00 45.45 4.46
34 35 3.652057 AGACCCATCCACCAACTATTG 57.348 47.619 0.00 0.00 0.00 1.90
35 36 3.877735 GCAAGACCCATCCACCAACTATT 60.878 47.826 0.00 0.00 0.00 1.73
36 37 2.357154 GCAAGACCCATCCACCAACTAT 60.357 50.000 0.00 0.00 0.00 2.12
37 38 1.004277 GCAAGACCCATCCACCAACTA 59.996 52.381 0.00 0.00 0.00 2.24
38 39 0.251341 GCAAGACCCATCCACCAACT 60.251 55.000 0.00 0.00 0.00 3.16
39 40 0.539438 TGCAAGACCCATCCACCAAC 60.539 55.000 0.00 0.00 0.00 3.77
40 41 0.251297 CTGCAAGACCCATCCACCAA 60.251 55.000 0.00 0.00 34.07 3.67
41 42 1.379916 CTGCAAGACCCATCCACCA 59.620 57.895 0.00 0.00 34.07 4.17
42 43 2.048603 GCTGCAAGACCCATCCACC 61.049 63.158 0.00 0.00 34.07 4.61
43 44 2.401766 CGCTGCAAGACCCATCCAC 61.402 63.158 0.00 0.00 34.07 4.02
44 45 2.046023 CGCTGCAAGACCCATCCA 60.046 61.111 0.00 0.00 34.07 3.41
45 46 2.825836 CCGCTGCAAGACCCATCC 60.826 66.667 0.00 0.00 34.07 3.51
46 47 2.045926 ACCGCTGCAAGACCCATC 60.046 61.111 0.00 0.00 34.07 3.51
47 48 2.360350 CACCGCTGCAAGACCCAT 60.360 61.111 0.00 0.00 34.07 4.00
48 49 3.555324 TCACCGCTGCAAGACCCA 61.555 61.111 0.00 0.00 34.07 4.51
49 50 3.050275 GTCACCGCTGCAAGACCC 61.050 66.667 0.00 0.00 34.07 4.46
50 51 2.280797 TGTCACCGCTGCAAGACC 60.281 61.111 11.79 0.00 34.07 3.85
51 52 1.560860 GAGTGTCACCGCTGCAAGAC 61.561 60.000 0.00 4.86 34.07 3.01
52 53 1.300931 GAGTGTCACCGCTGCAAGA 60.301 57.895 0.00 0.00 34.07 3.02
53 54 0.882042 AAGAGTGTCACCGCTGCAAG 60.882 55.000 0.00 0.00 0.00 4.01
54 55 0.391228 TAAGAGTGTCACCGCTGCAA 59.609 50.000 0.00 0.00 0.00 4.08
55 56 0.391228 TTAAGAGTGTCACCGCTGCA 59.609 50.000 0.00 0.00 0.00 4.41
56 57 0.790814 GTTAAGAGTGTCACCGCTGC 59.209 55.000 0.00 0.00 0.00 5.25
57 58 2.440539 AGTTAAGAGTGTCACCGCTG 57.559 50.000 0.00 0.00 0.00 5.18
58 59 2.094649 GCTAGTTAAGAGTGTCACCGCT 60.095 50.000 0.00 0.00 0.00 5.52
59 60 2.260481 GCTAGTTAAGAGTGTCACCGC 58.740 52.381 0.00 0.00 0.00 5.68
60 61 3.243336 GTGCTAGTTAAGAGTGTCACCG 58.757 50.000 0.00 0.00 0.00 4.94
61 62 4.252971 TGTGCTAGTTAAGAGTGTCACC 57.747 45.455 0.00 0.00 0.00 4.02
62 63 4.686554 CCTTGTGCTAGTTAAGAGTGTCAC 59.313 45.833 0.00 0.00 0.00 3.67
63 64 4.799586 GCCTTGTGCTAGTTAAGAGTGTCA 60.800 45.833 0.00 0.00 36.87 3.58
64 65 3.680458 GCCTTGTGCTAGTTAAGAGTGTC 59.320 47.826 0.00 0.00 36.87 3.67
65 66 3.665190 GCCTTGTGCTAGTTAAGAGTGT 58.335 45.455 0.00 0.00 36.87 3.55
66 67 2.668457 CGCCTTGTGCTAGTTAAGAGTG 59.332 50.000 0.00 0.00 38.05 3.51
67 68 2.561419 TCGCCTTGTGCTAGTTAAGAGT 59.439 45.455 0.00 0.00 38.05 3.24
68 69 2.924290 GTCGCCTTGTGCTAGTTAAGAG 59.076 50.000 0.00 0.00 38.05 2.85
69 70 2.353406 GGTCGCCTTGTGCTAGTTAAGA 60.353 50.000 0.00 0.00 38.05 2.10
70 71 2.000447 GGTCGCCTTGTGCTAGTTAAG 59.000 52.381 0.00 0.00 38.05 1.85
71 72 1.345089 TGGTCGCCTTGTGCTAGTTAA 59.655 47.619 0.00 0.00 38.05 2.01
72 73 0.970640 TGGTCGCCTTGTGCTAGTTA 59.029 50.000 0.00 0.00 38.05 2.24
73 74 0.324943 ATGGTCGCCTTGTGCTAGTT 59.675 50.000 0.00 0.00 38.05 2.24
74 75 0.391661 CATGGTCGCCTTGTGCTAGT 60.392 55.000 0.00 0.00 38.05 2.57
75 76 1.709147 GCATGGTCGCCTTGTGCTAG 61.709 60.000 11.45 0.00 38.05 3.42
76 77 1.745115 GCATGGTCGCCTTGTGCTA 60.745 57.895 11.45 0.00 38.05 3.49
77 78 3.058160 GCATGGTCGCCTTGTGCT 61.058 61.111 11.45 0.00 38.05 4.40
85 86 2.202932 ATCACGAGGCATGGTCGC 60.203 61.111 0.00 0.00 41.26 5.19
86 87 0.460109 TTGATCACGAGGCATGGTCG 60.460 55.000 0.00 0.00 43.25 4.79
87 88 1.959042 ATTGATCACGAGGCATGGTC 58.041 50.000 0.00 0.00 0.00 4.02
88 89 2.292267 GAATTGATCACGAGGCATGGT 58.708 47.619 0.00 0.00 0.00 3.55
89 90 1.262417 CGAATTGATCACGAGGCATGG 59.738 52.381 0.00 0.00 0.00 3.66
90 91 1.333524 GCGAATTGATCACGAGGCATG 60.334 52.381 8.26 0.00 0.00 4.06
91 92 0.940126 GCGAATTGATCACGAGGCAT 59.060 50.000 8.26 0.00 0.00 4.40
92 93 1.420641 CGCGAATTGATCACGAGGCA 61.421 55.000 0.00 0.00 35.64 4.75
93 94 1.273887 CGCGAATTGATCACGAGGC 59.726 57.895 0.00 3.58 35.64 4.70
94 95 0.999406 AACGCGAATTGATCACGAGG 59.001 50.000 15.93 2.78 37.06 4.63
95 96 1.848186 GCAACGCGAATTGATCACGAG 60.848 52.381 15.93 7.84 37.06 4.18
96 97 0.094558 GCAACGCGAATTGATCACGA 59.905 50.000 15.93 0.00 37.06 4.35
97 98 0.857311 GGCAACGCGAATTGATCACG 60.857 55.000 15.93 0.00 39.45 4.35
98 99 0.167908 TGGCAACGCGAATTGATCAC 59.832 50.000 15.93 0.28 42.51 3.06
99 100 1.093972 ATGGCAACGCGAATTGATCA 58.906 45.000 15.93 10.43 42.51 2.92
100 101 1.469917 CATGGCAACGCGAATTGATC 58.530 50.000 15.93 4.78 42.51 2.92
101 102 0.526096 GCATGGCAACGCGAATTGAT 60.526 50.000 15.93 0.00 42.51 2.57
102 103 1.154054 GCATGGCAACGCGAATTGA 60.154 52.632 15.93 0.00 42.51 2.57
103 104 2.160221 GGCATGGCAACGCGAATTG 61.160 57.895 15.93 9.45 42.51 2.32
104 105 2.181525 GGCATGGCAACGCGAATT 59.818 55.556 15.93 0.00 42.51 2.17
105 106 3.055080 CTGGCATGGCAACGCGAAT 62.055 57.895 23.47 0.00 42.51 3.34
106 107 3.736100 CTGGCATGGCAACGCGAA 61.736 61.111 23.47 0.00 42.51 4.70
109 110 1.383456 TTATCCTGGCATGGCAACGC 61.383 55.000 23.47 3.81 42.51 4.84
110 111 1.102154 TTTATCCTGGCATGGCAACG 58.898 50.000 23.47 15.62 42.51 4.10
111 112 2.099756 GAGTTTATCCTGGCATGGCAAC 59.900 50.000 23.47 16.44 0.00 4.17
112 113 2.378038 GAGTTTATCCTGGCATGGCAA 58.622 47.619 23.47 9.91 0.00 4.52
113 114 1.410083 GGAGTTTATCCTGGCATGGCA 60.410 52.381 21.97 21.97 45.64 4.92
114 115 1.322442 GGAGTTTATCCTGGCATGGC 58.678 55.000 13.29 13.29 45.64 4.40
148 149 2.719979 GCTCAATGGCAGCCGATG 59.280 61.111 7.03 8.50 0.00 3.84
153 154 1.980772 ACCAAGGCTCAATGGCAGC 60.981 57.895 3.59 0.00 44.55 5.25
154 155 0.609957 TCACCAAGGCTCAATGGCAG 60.610 55.000 3.59 0.00 44.55 4.85
155 156 0.609957 CTCACCAAGGCTCAATGGCA 60.610 55.000 3.59 0.00 44.55 4.92
156 157 1.941999 GCTCACCAAGGCTCAATGGC 61.942 60.000 3.59 0.00 40.51 4.40
157 158 0.323178 AGCTCACCAAGGCTCAATGG 60.323 55.000 2.11 2.11 42.60 3.16
158 159 2.408271 TAGCTCACCAAGGCTCAATG 57.592 50.000 0.00 0.00 39.65 2.82
159 160 3.659183 ATTAGCTCACCAAGGCTCAAT 57.341 42.857 0.00 0.00 39.65 2.57
160 161 4.568072 TTATTAGCTCACCAAGGCTCAA 57.432 40.909 0.00 0.00 39.65 3.02
161 162 4.568072 TTTATTAGCTCACCAAGGCTCA 57.432 40.909 0.00 0.00 39.65 4.26
162 163 4.884164 ACATTTATTAGCTCACCAAGGCTC 59.116 41.667 0.00 0.00 39.65 4.70
163 164 4.860022 ACATTTATTAGCTCACCAAGGCT 58.140 39.130 0.00 0.00 41.92 4.58
164 165 4.640201 TGACATTTATTAGCTCACCAAGGC 59.360 41.667 0.00 0.00 0.00 4.35
165 166 6.678900 GCTTGACATTTATTAGCTCACCAAGG 60.679 42.308 0.00 0.00 0.00 3.61
166 167 6.094603 AGCTTGACATTTATTAGCTCACCAAG 59.905 38.462 0.00 0.00 37.64 3.61
167 168 5.945784 AGCTTGACATTTATTAGCTCACCAA 59.054 36.000 0.00 0.00 37.64 3.67
168 169 5.355071 CAGCTTGACATTTATTAGCTCACCA 59.645 40.000 0.00 0.00 40.01 4.17
169 170 5.731686 GCAGCTTGACATTTATTAGCTCACC 60.732 44.000 0.00 0.00 40.01 4.02
170 171 5.163723 TGCAGCTTGACATTTATTAGCTCAC 60.164 40.000 0.00 0.00 40.01 3.51
171 172 4.943093 TGCAGCTTGACATTTATTAGCTCA 59.057 37.500 0.00 0.00 40.01 4.26
172 173 5.490139 TGCAGCTTGACATTTATTAGCTC 57.510 39.130 0.00 0.00 40.01 4.09
173 174 5.902613 TTGCAGCTTGACATTTATTAGCT 57.097 34.783 0.00 0.00 42.56 3.32
174 175 5.689068 GGATTGCAGCTTGACATTTATTAGC 59.311 40.000 0.00 0.00 0.00 3.09
175 176 6.183360 TGGGATTGCAGCTTGACATTTATTAG 60.183 38.462 0.00 0.00 0.00 1.73
176 177 5.655974 TGGGATTGCAGCTTGACATTTATTA 59.344 36.000 0.00 0.00 0.00 0.98
177 178 4.467082 TGGGATTGCAGCTTGACATTTATT 59.533 37.500 0.00 0.00 0.00 1.40
178 179 4.025360 TGGGATTGCAGCTTGACATTTAT 58.975 39.130 0.00 0.00 0.00 1.40
179 180 3.429492 TGGGATTGCAGCTTGACATTTA 58.571 40.909 0.00 0.00 0.00 1.40
180 181 2.250031 TGGGATTGCAGCTTGACATTT 58.750 42.857 0.00 0.00 0.00 2.32
181 182 1.927487 TGGGATTGCAGCTTGACATT 58.073 45.000 0.00 0.00 0.00 2.71
182 183 1.927487 TTGGGATTGCAGCTTGACAT 58.073 45.000 0.00 0.00 0.00 3.06
183 184 1.702182 TTTGGGATTGCAGCTTGACA 58.298 45.000 0.00 0.00 0.00 3.58
184 185 3.445096 AGTATTTGGGATTGCAGCTTGAC 59.555 43.478 0.00 0.00 0.00 3.18
185 186 3.700538 AGTATTTGGGATTGCAGCTTGA 58.299 40.909 0.00 0.00 0.00 3.02
186 187 4.178540 CAAGTATTTGGGATTGCAGCTTG 58.821 43.478 0.00 0.00 0.00 4.01
187 188 3.368739 GCAAGTATTTGGGATTGCAGCTT 60.369 43.478 4.02 0.00 45.66 3.74
188 189 2.167075 GCAAGTATTTGGGATTGCAGCT 59.833 45.455 4.02 0.00 45.66 4.24
189 190 2.543641 GCAAGTATTTGGGATTGCAGC 58.456 47.619 4.02 0.00 45.66 5.25
192 193 3.460103 CCATGCAAGTATTTGGGATTGC 58.540 45.455 0.00 1.96 46.36 3.56
198 199 5.088680 ACAATTCCCATGCAAGTATTTGG 57.911 39.130 0.00 0.00 34.79 3.28
199 200 5.969423 AGACAATTCCCATGCAAGTATTTG 58.031 37.500 0.00 0.00 37.36 2.32
200 201 6.610075 AAGACAATTCCCATGCAAGTATTT 57.390 33.333 0.00 0.00 0.00 1.40
201 202 6.891908 ACTAAGACAATTCCCATGCAAGTATT 59.108 34.615 0.00 0.00 0.00 1.89
202 203 6.426587 ACTAAGACAATTCCCATGCAAGTAT 58.573 36.000 0.00 0.00 0.00 2.12
203 204 5.815581 ACTAAGACAATTCCCATGCAAGTA 58.184 37.500 0.00 0.00 0.00 2.24
204 205 4.666512 ACTAAGACAATTCCCATGCAAGT 58.333 39.130 0.00 0.00 0.00 3.16
205 206 5.644644 GAACTAAGACAATTCCCATGCAAG 58.355 41.667 0.00 0.00 0.00 4.01
206 207 4.155826 CGAACTAAGACAATTCCCATGCAA 59.844 41.667 0.00 0.00 0.00 4.08
207 208 3.689161 CGAACTAAGACAATTCCCATGCA 59.311 43.478 0.00 0.00 0.00 3.96
208 209 3.689649 ACGAACTAAGACAATTCCCATGC 59.310 43.478 0.00 0.00 0.00 4.06
209 210 6.761242 TCATACGAACTAAGACAATTCCCATG 59.239 38.462 0.00 0.00 0.00 3.66
210 211 6.884832 TCATACGAACTAAGACAATTCCCAT 58.115 36.000 0.00 0.00 0.00 4.00
211 212 6.288941 TCATACGAACTAAGACAATTCCCA 57.711 37.500 0.00 0.00 0.00 4.37
212 213 6.292919 GCATCATACGAACTAAGACAATTCCC 60.293 42.308 0.00 0.00 0.00 3.97
213 214 6.257849 TGCATCATACGAACTAAGACAATTCC 59.742 38.462 0.00 0.00 0.00 3.01
214 215 7.010552 AGTGCATCATACGAACTAAGACAATTC 59.989 37.037 0.00 0.00 0.00 2.17
215 216 6.818644 AGTGCATCATACGAACTAAGACAATT 59.181 34.615 0.00 0.00 0.00 2.32
216 217 6.256539 CAGTGCATCATACGAACTAAGACAAT 59.743 38.462 0.00 0.00 0.00 2.71
217 218 5.576774 CAGTGCATCATACGAACTAAGACAA 59.423 40.000 0.00 0.00 0.00 3.18
218 219 5.102313 CAGTGCATCATACGAACTAAGACA 58.898 41.667 0.00 0.00 0.00 3.41
219 220 5.103000 ACAGTGCATCATACGAACTAAGAC 58.897 41.667 0.00 0.00 0.00 3.01
220 221 5.324784 ACAGTGCATCATACGAACTAAGA 57.675 39.130 0.00 0.00 0.00 2.10
221 222 6.408858 AAACAGTGCATCATACGAACTAAG 57.591 37.500 0.00 0.00 0.00 2.18
222 223 7.892778 TTAAACAGTGCATCATACGAACTAA 57.107 32.000 0.00 0.00 0.00 2.24
223 224 7.892778 TTTAAACAGTGCATCATACGAACTA 57.107 32.000 0.00 0.00 0.00 2.24
224 225 6.795098 TTTAAACAGTGCATCATACGAACT 57.205 33.333 0.00 0.00 0.00 3.01
225 226 7.373441 GCTATTTAAACAGTGCATCATACGAAC 59.627 37.037 0.00 0.00 0.00 3.95
226 227 7.065204 TGCTATTTAAACAGTGCATCATACGAA 59.935 33.333 0.00 0.00 0.00 3.85
227 228 6.536941 TGCTATTTAAACAGTGCATCATACGA 59.463 34.615 0.00 0.00 0.00 3.43
228 229 6.714492 TGCTATTTAAACAGTGCATCATACG 58.286 36.000 0.00 0.00 0.00 3.06
229 230 7.113965 GCATGCTATTTAAACAGTGCATCATAC 59.886 37.037 11.37 4.33 38.82 2.39
230 231 7.013559 AGCATGCTATTTAAACAGTGCATCATA 59.986 33.333 21.21 0.00 38.82 2.15
231 232 5.981315 GCATGCTATTTAAACAGTGCATCAT 59.019 36.000 11.37 0.00 38.82 2.45
232 233 5.125900 AGCATGCTATTTAAACAGTGCATCA 59.874 36.000 21.21 0.00 38.82 3.07
233 234 5.585390 AGCATGCTATTTAAACAGTGCATC 58.415 37.500 21.21 8.60 38.82 3.91
234 235 5.587388 AGCATGCTATTTAAACAGTGCAT 57.413 34.783 21.21 10.81 41.08 3.96
235 236 6.507958 TTAGCATGCTATTTAAACAGTGCA 57.492 33.333 27.35 5.55 34.01 4.57
236 237 7.195646 TCATTAGCATGCTATTTAAACAGTGC 58.804 34.615 27.35 1.82 0.00 4.40
237 238 9.740239 AATCATTAGCATGCTATTTAAACAGTG 57.260 29.630 27.35 12.83 0.00 3.66
245 246 9.664332 CTACTCCTAATCATTAGCATGCTATTT 57.336 33.333 27.35 19.09 31.81 1.40
246 247 8.263640 CCTACTCCTAATCATTAGCATGCTATT 58.736 37.037 27.35 20.72 31.81 1.73
247 248 7.147585 CCCTACTCCTAATCATTAGCATGCTAT 60.148 40.741 27.35 14.89 31.81 2.97
248 249 6.155221 CCCTACTCCTAATCATTAGCATGCTA 59.845 42.308 23.52 23.52 31.81 3.49
249 250 5.046014 CCCTACTCCTAATCATTAGCATGCT 60.046 44.000 25.99 25.99 31.81 3.79
250 251 5.181748 CCCTACTCCTAATCATTAGCATGC 58.818 45.833 10.51 10.51 31.81 4.06
251 252 6.365970 ACCCTACTCCTAATCATTAGCATG 57.634 41.667 0.00 0.00 31.81 4.06
252 253 7.735321 ACTAACCCTACTCCTAATCATTAGCAT 59.265 37.037 0.00 0.00 31.81 3.79
253 254 7.073854 ACTAACCCTACTCCTAATCATTAGCA 58.926 38.462 0.00 0.00 31.81 3.49
254 255 7.541916 ACTAACCCTACTCCTAATCATTAGC 57.458 40.000 0.00 0.00 31.81 3.09
255 256 8.925338 ACAACTAACCCTACTCCTAATCATTAG 58.075 37.037 0.00 0.00 0.00 1.73
256 257 8.701895 CACAACTAACCCTACTCCTAATCATTA 58.298 37.037 0.00 0.00 0.00 1.90
257 258 7.182206 ACACAACTAACCCTACTCCTAATCATT 59.818 37.037 0.00 0.00 0.00 2.57
258 259 6.672657 ACACAACTAACCCTACTCCTAATCAT 59.327 38.462 0.00 0.00 0.00 2.45
259 260 6.021030 ACACAACTAACCCTACTCCTAATCA 58.979 40.000 0.00 0.00 0.00 2.57
260 261 6.541934 ACACAACTAACCCTACTCCTAATC 57.458 41.667 0.00 0.00 0.00 1.75
261 262 6.271624 ACAACACAACTAACCCTACTCCTAAT 59.728 38.462 0.00 0.00 0.00 1.73
262 263 5.603813 ACAACACAACTAACCCTACTCCTAA 59.396 40.000 0.00 0.00 0.00 2.69
263 264 5.011329 CACAACACAACTAACCCTACTCCTA 59.989 44.000 0.00 0.00 0.00 2.94
264 265 3.971971 ACAACACAACTAACCCTACTCCT 59.028 43.478 0.00 0.00 0.00 3.69
265 266 4.062991 CACAACACAACTAACCCTACTCC 58.937 47.826 0.00 0.00 0.00 3.85
266 267 4.700700 ACACAACACAACTAACCCTACTC 58.299 43.478 0.00 0.00 0.00 2.59
267 268 4.765813 ACACAACACAACTAACCCTACT 57.234 40.909 0.00 0.00 0.00 2.57
268 269 4.637091 ACAACACAACACAACTAACCCTAC 59.363 41.667 0.00 0.00 0.00 3.18
269 270 4.846040 ACAACACAACACAACTAACCCTA 58.154 39.130 0.00 0.00 0.00 3.53
270 271 3.692690 ACAACACAACACAACTAACCCT 58.307 40.909 0.00 0.00 0.00 4.34
271 272 4.082679 TGAACAACACAACACAACTAACCC 60.083 41.667 0.00 0.00 0.00 4.11
272 273 5.049398 TGAACAACACAACACAACTAACC 57.951 39.130 0.00 0.00 0.00 2.85
273 274 7.096640 GCATATGAACAACACAACACAACTAAC 60.097 37.037 6.97 0.00 0.00 2.34
274 275 6.915300 GCATATGAACAACACAACACAACTAA 59.085 34.615 6.97 0.00 0.00 2.24
275 276 6.434596 GCATATGAACAACACAACACAACTA 58.565 36.000 6.97 0.00 0.00 2.24
276 277 5.280945 GCATATGAACAACACAACACAACT 58.719 37.500 6.97 0.00 0.00 3.16
277 278 4.146271 CGCATATGAACAACACAACACAAC 59.854 41.667 6.97 0.00 0.00 3.32
278 279 4.035675 TCGCATATGAACAACACAACACAA 59.964 37.500 6.97 0.00 0.00 3.33
279 280 3.561725 TCGCATATGAACAACACAACACA 59.438 39.130 6.97 0.00 0.00 3.72
280 281 4.140518 TCGCATATGAACAACACAACAC 57.859 40.909 6.97 0.00 0.00 3.32
281 282 4.215185 ACATCGCATATGAACAACACAACA 59.785 37.500 6.97 0.00 0.00 3.33
282 283 4.722194 ACATCGCATATGAACAACACAAC 58.278 39.130 6.97 0.00 0.00 3.32
283 284 5.369685 AACATCGCATATGAACAACACAA 57.630 34.783 6.97 0.00 0.00 3.33
284 285 5.049129 TCAAACATCGCATATGAACAACACA 60.049 36.000 6.97 0.00 0.00 3.72
285 286 5.389778 TCAAACATCGCATATGAACAACAC 58.610 37.500 6.97 0.00 0.00 3.32
286 287 5.619625 TCAAACATCGCATATGAACAACA 57.380 34.783 6.97 0.00 0.00 3.33
287 288 6.021232 CACATCAAACATCGCATATGAACAAC 60.021 38.462 6.97 0.00 0.00 3.32
288 289 6.028987 CACATCAAACATCGCATATGAACAA 58.971 36.000 6.97 0.00 0.00 2.83
289 290 5.353678 TCACATCAAACATCGCATATGAACA 59.646 36.000 6.97 0.00 0.00 3.18
290 291 5.809464 TCACATCAAACATCGCATATGAAC 58.191 37.500 6.97 0.00 0.00 3.18
291 292 6.093909 ACTTCACATCAAACATCGCATATGAA 59.906 34.615 6.97 0.00 0.00 2.57
292 293 5.585844 ACTTCACATCAAACATCGCATATGA 59.414 36.000 6.97 0.00 0.00 2.15
293 294 5.679792 CACTTCACATCAAACATCGCATATG 59.320 40.000 0.00 0.00 0.00 1.78
308 309 3.493002 CCCAAATGCAACACACTTCACAT 60.493 43.478 0.00 0.00 0.00 3.21
343 344 8.325421 TGTTCTGCTCACCGTTTTTAAATATA 57.675 30.769 0.00 0.00 0.00 0.86
354 355 1.411246 TGTAGTTGTTCTGCTCACCGT 59.589 47.619 0.00 0.00 0.00 4.83
366 367 2.649190 TGGTTGTGTGCATGTAGTTGT 58.351 42.857 0.00 0.00 0.00 3.32
367 368 3.706802 TTGGTTGTGTGCATGTAGTTG 57.293 42.857 0.00 0.00 0.00 3.16
370 371 3.706802 TGTTTGGTTGTGTGCATGTAG 57.293 42.857 0.00 0.00 0.00 2.74
374 375 1.470632 CGGTTGTTTGGTTGTGTGCAT 60.471 47.619 0.00 0.00 0.00 3.96
391 394 1.795170 GAGCACATGCAAACCACGGT 61.795 55.000 6.64 0.00 45.16 4.83
400 403 1.604308 CAAGGGGTGAGCACATGCA 60.604 57.895 6.64 0.00 45.16 3.96
401 404 0.895100 TTCAAGGGGTGAGCACATGC 60.895 55.000 2.75 0.00 37.61 4.06
416 419 2.819608 GTGGCCTCTATTTGTGCTTCAA 59.180 45.455 3.32 0.00 0.00 2.69
421 424 1.544724 TTGGTGGCCTCTATTTGTGC 58.455 50.000 3.32 0.00 0.00 4.57
424 427 3.006752 TGCTTTTTGGTGGCCTCTATTTG 59.993 43.478 3.32 0.00 0.00 2.32
425 428 3.238597 TGCTTTTTGGTGGCCTCTATTT 58.761 40.909 3.32 0.00 0.00 1.40
430 433 0.671472 GCATGCTTTTTGGTGGCCTC 60.671 55.000 11.37 0.00 0.00 4.70
442 445 1.630369 TCAGTGGACTTAGGCATGCTT 59.370 47.619 18.92 13.45 0.00 3.91
444 447 1.945394 CATCAGTGGACTTAGGCATGC 59.055 52.381 9.90 9.90 0.00 4.06
448 451 2.113860 TTGCATCAGTGGACTTAGGC 57.886 50.000 0.00 0.00 0.00 3.93
464 467 0.449388 GGTAGTCTGCACTGCATTGC 59.551 55.000 21.14 21.14 43.31 3.56
465 468 1.812235 TGGTAGTCTGCACTGCATTG 58.188 50.000 3.64 0.00 38.13 2.82
472 475 2.157668 CACATCGTTTGGTAGTCTGCAC 59.842 50.000 0.00 0.00 0.00 4.57
478 481 6.093495 CCATGTTATTCACATCGTTTGGTAGT 59.907 38.462 0.00 0.00 43.17 2.73
488 491 7.329226 CAGGACAAAAACCATGTTATTCACATC 59.671 37.037 0.00 0.00 43.17 3.06
491 494 5.405269 GCAGGACAAAAACCATGTTATTCAC 59.595 40.000 0.00 0.00 0.00 3.18
503 506 6.013842 ACTAAGCTAATGCAGGACAAAAAC 57.986 37.500 0.00 0.00 42.74 2.43
504 507 5.767665 TGACTAAGCTAATGCAGGACAAAAA 59.232 36.000 0.00 0.00 42.74 1.94
505 508 5.312895 TGACTAAGCTAATGCAGGACAAAA 58.687 37.500 0.00 0.00 42.74 2.44
527 530 2.849942 TGTGTGATTCAACAGGTCCTG 58.150 47.619 17.88 17.88 37.52 3.86
528 531 3.181440 ACATGTGTGATTCAACAGGTCCT 60.181 43.478 0.00 0.00 0.00 3.85
529 532 3.149196 ACATGTGTGATTCAACAGGTCC 58.851 45.455 0.00 0.00 0.00 4.46
530 533 5.106555 CCTTACATGTGTGATTCAACAGGTC 60.107 44.000 9.11 0.00 0.00 3.85
531 534 4.761739 CCTTACATGTGTGATTCAACAGGT 59.238 41.667 9.11 17.07 0.00 4.00
532 535 4.379813 GCCTTACATGTGTGATTCAACAGG 60.380 45.833 9.11 10.15 0.00 4.00
533 536 4.669965 CGCCTTACATGTGTGATTCAACAG 60.670 45.833 9.11 0.00 0.00 3.16
534 537 3.188254 CGCCTTACATGTGTGATTCAACA 59.812 43.478 9.11 0.00 0.00 3.33
535 538 3.747193 CGCCTTACATGTGTGATTCAAC 58.253 45.455 9.11 0.00 0.00 3.18
536 539 2.161410 GCGCCTTACATGTGTGATTCAA 59.839 45.455 9.11 0.00 0.00 2.69
537 540 1.737236 GCGCCTTACATGTGTGATTCA 59.263 47.619 9.11 0.00 0.00 2.57
538 541 1.064060 GGCGCCTTACATGTGTGATTC 59.936 52.381 22.15 0.00 0.00 2.52
539 542 1.094785 GGCGCCTTACATGTGTGATT 58.905 50.000 22.15 0.00 0.00 2.57
540 543 0.035534 TGGCGCCTTACATGTGTGAT 60.036 50.000 29.70 0.00 0.00 3.06
541 544 0.250510 TTGGCGCCTTACATGTGTGA 60.251 50.000 29.70 0.00 0.00 3.58
542 545 0.595588 TTTGGCGCCTTACATGTGTG 59.404 50.000 29.70 0.00 0.00 3.82
543 546 1.323412 TTTTGGCGCCTTACATGTGT 58.677 45.000 29.70 0.00 0.00 3.72
544 547 2.430546 TTTTTGGCGCCTTACATGTG 57.569 45.000 29.70 0.00 0.00 3.21
566 569 2.485903 CGTGTTTGGTTACCTGCACTA 58.514 47.619 16.30 0.00 0.00 2.74
573 576 1.002315 TCTAGGGCGTGTTTGGTTACC 59.998 52.381 0.00 0.00 0.00 2.85
587 590 3.117512 AGGTGGGTTGCAATATTCTAGGG 60.118 47.826 0.59 0.00 0.00 3.53
588 591 4.170468 AGGTGGGTTGCAATATTCTAGG 57.830 45.455 0.59 0.00 0.00 3.02
596 599 3.447229 GCTAATTGTAGGTGGGTTGCAAT 59.553 43.478 0.59 0.00 33.20 3.56
604 627 2.991250 ACTGCTGCTAATTGTAGGTGG 58.009 47.619 0.00 0.00 0.00 4.61
663 686 7.466050 GCGAATTCGATGTCCTTCTCTATTTTT 60.466 37.037 31.01 0.00 43.02 1.94
664 687 6.018669 GCGAATTCGATGTCCTTCTCTATTTT 60.019 38.462 31.01 0.00 43.02 1.82
681 704 2.576847 GGCTTTGCGGCGAATTCG 60.577 61.111 23.34 23.34 43.27 3.34
692 715 3.005554 CTGTACTCATGTCTGGGCTTTG 58.994 50.000 0.00 0.00 0.00 2.77
728 751 1.068083 CGACTCATCATGTCCGGGG 59.932 63.158 0.00 0.00 0.00 5.73
746 769 1.371183 GGGCTTTTTCCTGTTGGGC 59.629 57.895 0.00 0.00 34.39 5.36
835 861 3.154710 GAGAGGGTGTTTAGGGTTTTGG 58.845 50.000 0.00 0.00 0.00 3.28
852 878 2.043450 AGGGAGAGGCGTGGAGAG 60.043 66.667 0.00 0.00 0.00 3.20
874 900 1.006758 TGGAGGGACGCTATATAGGGG 59.993 57.143 25.55 11.57 40.21 4.79
960 994 2.653087 GGTAGGGTTTCCTCGCGGT 61.653 63.158 6.13 0.00 43.66 5.68
986 1020 2.749044 CCATGGCTGCTTCTGCGT 60.749 61.111 0.00 0.00 43.34 5.24
1249 1292 2.510874 CGGCTAGAGCTAATCGAATCG 58.489 52.381 0.00 0.00 41.70 3.34
1326 1369 1.295357 TACAACGCTGCATCCAACGG 61.295 55.000 0.00 0.00 34.99 4.44
1341 1384 8.057011 TGGTCTATCCAACACTAGACTATACAA 58.943 37.037 0.00 0.00 44.12 2.41
1428 1482 1.019805 GGAAACGGTAGAGCTGCACC 61.020 60.000 1.02 0.00 0.00 5.01
1666 1720 9.295214 CTCAGTAATAATATATTGCTCGTCAGG 57.705 37.037 8.28 0.00 0.00 3.86
1755 1809 2.392662 TGCACAAATTTCAACAGGGGA 58.607 42.857 0.00 0.00 0.00 4.81
1822 1876 7.791029 TGTAGACTAGATGGTTTGCATCATAA 58.209 34.615 0.00 0.00 0.00 1.90
1847 1902 6.777580 AGACTGATGGACATTAAGTTGGTTTT 59.222 34.615 3.94 0.00 0.00 2.43
1881 1936 4.276678 GGGTTACCAAAACCAGAACACTAC 59.723 45.833 2.98 0.00 42.60 2.73
1912 1967 9.803130 CAAGATACAGTTTAAATATGAGCATCG 57.197 33.333 9.59 0.00 38.61 3.84
2060 2115 0.033796 CACTCCCCACCAGCATTGAT 60.034 55.000 0.00 0.00 0.00 2.57
2101 2156 2.583441 CCCAGTTGGAGCACGGAGA 61.583 63.158 0.00 0.00 37.39 3.71
2163 2218 5.117355 CCATAGAAATGGCAAGTGCATAG 57.883 43.478 5.52 0.00 46.17 2.23
2200 2255 9.840427 CACCACTTCCTAAAAACTTGTAATATG 57.160 33.333 0.00 0.00 0.00 1.78
2207 2262 3.383185 TGGCACCACTTCCTAAAAACTTG 59.617 43.478 0.00 0.00 0.00 3.16
2246 2301 5.192176 TGATCAATACAGCCACAGCAAATA 58.808 37.500 0.00 0.00 43.56 1.40
2308 2363 8.737168 AAGAAAAATGATAACGGATGATGAGA 57.263 30.769 0.00 0.00 0.00 3.27
2310 2365 8.504812 TGAAGAAAAATGATAACGGATGATGA 57.495 30.769 0.00 0.00 0.00 2.92
2311 2366 8.615211 TCTGAAGAAAAATGATAACGGATGATG 58.385 33.333 0.00 0.00 0.00 3.07
2312 2367 8.737168 TCTGAAGAAAAATGATAACGGATGAT 57.263 30.769 0.00 0.00 0.00 2.45
2318 2373 6.314896 AGCCTCTCTGAAGAAAAATGATAACG 59.685 38.462 0.00 0.00 0.00 3.18
2326 2381 6.357367 ACAACTTAGCCTCTCTGAAGAAAAA 58.643 36.000 0.00 0.00 0.00 1.94
2346 2401 8.039603 TCCATCATAAACATCAGTGTAACAAC 57.960 34.615 0.00 0.00 41.43 3.32
2369 2424 3.058224 GGCACACAAGTTAATCACACTCC 60.058 47.826 0.00 0.00 0.00 3.85
2387 2451 0.610232 ATGAAGTTCCAGGCAGGCAC 60.610 55.000 0.00 0.00 37.29 5.01
2418 2483 7.755582 AAAAGATCAAAACCAAAAGAAGACG 57.244 32.000 0.00 0.00 0.00 4.18
2421 2486 8.606602 CCTCAAAAAGATCAAAACCAAAAGAAG 58.393 33.333 0.00 0.00 0.00 2.85
2507 2572 4.850386 ACTAGGTAAATGGTTCCCTCAGTT 59.150 41.667 0.00 0.00 0.00 3.16
2576 2641 2.036217 TGCACAAATTTCAGCAGGGAAG 59.964 45.455 9.38 0.00 32.48 3.46
2622 2689 3.382546 GCTGGGTAAAGTGCATCATCATT 59.617 43.478 0.00 0.00 0.00 2.57
2631 2698 4.199310 TCATAATGAGCTGGGTAAAGTGC 58.801 43.478 0.00 0.00 0.00 4.40
2723 2790 5.363101 TGCCAACATGTCAAAATAGCAAAA 58.637 33.333 0.00 0.00 0.00 2.44
2727 2794 6.813152 ACTTTATGCCAACATGTCAAAATAGC 59.187 34.615 0.00 0.00 37.04 2.97
2731 2798 9.853555 CTAATACTTTATGCCAACATGTCAAAA 57.146 29.630 0.00 0.00 37.04 2.44
2757 2824 7.472543 AGTCACAAAAACACTTACAATGAGAC 58.527 34.615 0.00 0.00 0.00 3.36
2769 2836 5.519566 TCATCATTGCAAGTCACAAAAACAC 59.480 36.000 4.94 0.00 0.00 3.32
2981 3050 7.175347 TGAGCTGGGTAATAGTATCATCATC 57.825 40.000 0.00 0.00 0.00 2.92
3092 3161 8.832521 CACAATAGGCAATAATGAAATGCAATT 58.167 29.630 0.00 0.00 41.80 2.32
3271 6086 8.787884 CATAAGCAAAGCAAAGAAAACAAAAAC 58.212 29.630 0.00 0.00 0.00 2.43
3309 6126 9.435688 AAAAATAATCAAGACAAAATGCTACCC 57.564 29.630 0.00 0.00 0.00 3.69
3459 6276 9.478768 GAATAGAAGAGCCTTTATAGGTTGTAC 57.521 37.037 0.90 0.00 44.00 2.90
3482 6299 5.565439 GCTGTGTTTATCTTGCCACAAGAAT 60.565 40.000 13.53 5.98 37.37 2.40
3485 6302 3.254166 AGCTGTGTTTATCTTGCCACAAG 59.746 43.478 0.81 0.81 37.37 3.16
3488 6305 4.253685 TCTAGCTGTGTTTATCTTGCCAC 58.746 43.478 0.00 0.00 0.00 5.01
3490 6307 5.355350 ACAATCTAGCTGTGTTTATCTTGCC 59.645 40.000 0.00 0.00 0.00 4.52
3492 6309 7.332926 AGTCACAATCTAGCTGTGTTTATCTTG 59.667 37.037 18.67 0.00 43.79 3.02
3493 6310 7.390027 AGTCACAATCTAGCTGTGTTTATCTT 58.610 34.615 18.67 2.84 43.79 2.40
3495 6312 8.879342 ATAGTCACAATCTAGCTGTGTTTATC 57.121 34.615 18.67 9.57 43.79 1.75
3585 6406 5.068591 TCTGCTCAGATATAACGCTTGGTTA 59.931 40.000 0.00 0.00 37.75 2.85
3699 6555 4.454728 AGCACAAGAAACAAAGCTGAAA 57.545 36.364 0.00 0.00 0.00 2.69
3707 6563 4.013728 ACAACTGGTAGCACAAGAAACAA 58.986 39.130 0.00 0.00 0.00 2.83
3709 6565 3.243068 CCACAACTGGTAGCACAAGAAAC 60.243 47.826 0.00 0.00 32.03 2.78
3721 6581 2.999185 ATGAATTCCCCACAACTGGT 57.001 45.000 2.27 0.00 35.46 4.00
3958 6820 1.891919 GAACAACAGCCGCTCCACA 60.892 57.895 0.00 0.00 0.00 4.17
4074 6936 5.348179 CACAAAATCAAAACAGTTGACAGCA 59.652 36.000 0.00 0.00 0.00 4.41
4262 7197 0.093705 GAGACAGAATTCGTGCACGC 59.906 55.000 33.63 19.65 39.60 5.34
4280 7215 3.831333 GGGAGATGTAGAGATGCTCATGA 59.169 47.826 0.00 0.00 32.06 3.07
4281 7216 3.055963 GGGGAGATGTAGAGATGCTCATG 60.056 52.174 0.00 0.00 32.06 3.07
4282 7217 3.172339 GGGGAGATGTAGAGATGCTCAT 58.828 50.000 0.00 0.00 32.06 2.90
4283 7218 2.178764 AGGGGAGATGTAGAGATGCTCA 59.821 50.000 0.00 0.00 32.06 4.26
4284 7219 2.825532 GAGGGGAGATGTAGAGATGCTC 59.174 54.545 0.00 0.00 0.00 4.26
4285 7220 2.450500 AGAGGGGAGATGTAGAGATGCT 59.549 50.000 0.00 0.00 0.00 3.79
4286 7221 2.562298 CAGAGGGGAGATGTAGAGATGC 59.438 54.545 0.00 0.00 0.00 3.91
4287 7222 4.111255 TCAGAGGGGAGATGTAGAGATG 57.889 50.000 0.00 0.00 0.00 2.90
4288 7223 4.449081 CCTTCAGAGGGGAGATGTAGAGAT 60.449 50.000 0.00 0.00 39.55 2.75
4289 7224 3.117322 CCTTCAGAGGGGAGATGTAGAGA 60.117 52.174 0.00 0.00 39.55 3.10
4290 7225 3.230134 CCTTCAGAGGGGAGATGTAGAG 58.770 54.545 0.00 0.00 39.55 2.43
4291 7226 2.691241 GCCTTCAGAGGGGAGATGTAGA 60.691 54.545 0.00 0.00 43.75 2.59
4292 7227 1.691434 GCCTTCAGAGGGGAGATGTAG 59.309 57.143 0.00 0.00 43.75 2.74
4293 7228 1.692762 GGCCTTCAGAGGGGAGATGTA 60.693 57.143 0.00 0.00 43.75 2.29
4306 7241 1.818060 CGAATGAACCAATGGCCTTCA 59.182 47.619 3.32 5.44 0.00 3.02
4307 7242 2.091541 TCGAATGAACCAATGGCCTTC 58.908 47.619 3.32 0.00 0.00 3.46
4324 7259 8.329502 TCTCATTTCCTATGACTATCCTATCGA 58.670 37.037 0.00 0.00 0.00 3.59
4325 7260 8.512966 TCTCATTTCCTATGACTATCCTATCG 57.487 38.462 0.00 0.00 0.00 2.92
4351 7286 9.646522 AGTTAATAGGATTTCAAATACATGCCT 57.353 29.630 0.00 0.00 0.00 4.75
4352 7287 9.899226 GAGTTAATAGGATTTCAAATACATGCC 57.101 33.333 0.00 0.00 0.00 4.40
4353 7288 9.599322 CGAGTTAATAGGATTTCAAATACATGC 57.401 33.333 0.00 0.00 0.00 4.06
4367 7302 8.516234 GCATCTTCTCTATTCGAGTTAATAGGA 58.484 37.037 2.78 0.00 39.11 2.94
4368 7303 7.757624 GGCATCTTCTCTATTCGAGTTAATAGG 59.242 40.741 2.78 0.00 39.11 2.57
4369 7304 7.757624 GGGCATCTTCTCTATTCGAGTTAATAG 59.242 40.741 0.00 0.00 40.75 1.73
4370 7305 7.451877 AGGGCATCTTCTCTATTCGAGTTAATA 59.548 37.037 0.00 0.00 40.75 0.98
4371 7306 6.268847 AGGGCATCTTCTCTATTCGAGTTAAT 59.731 38.462 0.00 0.00 40.75 1.40
4372 7307 5.598830 AGGGCATCTTCTCTATTCGAGTTAA 59.401 40.000 0.00 0.00 40.75 2.01
4373 7308 5.141182 AGGGCATCTTCTCTATTCGAGTTA 58.859 41.667 0.00 0.00 40.75 2.24
4378 7313 5.236047 CAGAAAAGGGCATCTTCTCTATTCG 59.764 44.000 0.00 0.00 31.41 3.34
4391 7326 7.722949 AATCATAGAATTTCAGAAAAGGGCA 57.277 32.000 0.00 0.00 0.00 5.36
4392 7327 8.355913 CCTAATCATAGAATTTCAGAAAAGGGC 58.644 37.037 0.00 0.00 0.00 5.19
4393 7328 9.632638 TCCTAATCATAGAATTTCAGAAAAGGG 57.367 33.333 0.00 0.00 0.00 3.95
4427 7362 4.344679 TGACATGAACCAAAAGGCATCTTT 59.655 37.500 0.00 0.00 44.40 2.52
4428 7363 3.896888 TGACATGAACCAAAAGGCATCTT 59.103 39.130 0.00 0.00 34.07 2.40
4463 7398 9.474313 AAAATAAACATTGGCCTAGACTCAATA 57.526 29.630 3.32 0.00 30.89 1.90
4514 7449 8.993424 GCCATTCCTATCCCTATAGAGAAATTA 58.007 37.037 0.00 0.00 37.84 1.40
4529 7464 8.953368 AAAAATTCATTTGAGCCATTCCTATC 57.047 30.769 0.00 0.00 0.00 2.08
4533 7468 6.175471 AGGAAAAATTCATTTGAGCCATTCC 58.825 36.000 0.00 0.00 0.00 3.01
4574 7509 3.512219 TTTGGTTTGTAGGAATCCCGT 57.488 42.857 0.00 0.00 37.58 5.28
4575 7510 4.857509 TTTTTGGTTTGTAGGAATCCCG 57.142 40.909 0.00 0.00 37.58 5.14
4675 7657 0.526524 GAGGGAGTTGCGTCATCGAG 60.527 60.000 0.00 0.00 39.71 4.04
4677 7659 0.108615 AAGAGGGAGTTGCGTCATCG 60.109 55.000 0.00 0.00 40.37 3.84
4680 7662 2.565391 TGAATAAGAGGGAGTTGCGTCA 59.435 45.455 0.00 0.00 0.00 4.35
4694 7676 9.416794 AGTCAGCGACAATCTAATATGAATAAG 57.583 33.333 10.52 0.00 34.60 1.73
4699 7681 7.941919 ACTAAGTCAGCGACAATCTAATATGA 58.058 34.615 10.52 0.00 34.60 2.15
4707 7689 5.583495 AGTCATACTAAGTCAGCGACAATC 58.417 41.667 10.52 0.00 34.60 2.67
4726 7711 9.645059 TGTTCAAATTTGTGTATTCAAAAGTCA 57.355 25.926 17.47 0.00 40.05 3.41
4774 7759 7.115095 GTGGCTTTCGATACTCTATGTTGATAC 59.885 40.741 0.00 0.00 0.00 2.24
4785 7770 2.288961 TTCGGTGGCTTTCGATACTC 57.711 50.000 0.00 0.00 35.25 2.59
4853 7838 9.191995 GGTAGTGGTAAATTCATGTTTCTTTTG 57.808 33.333 0.00 0.00 0.00 2.44
4855 7840 8.472007 TGGTAGTGGTAAATTCATGTTTCTTT 57.528 30.769 0.00 0.00 0.00 2.52
4881 7866 1.440618 TTGGAAGCTCACCCCTTGTA 58.559 50.000 7.32 0.00 0.00 2.41
4882 7867 0.779997 ATTGGAAGCTCACCCCTTGT 59.220 50.000 7.32 0.00 0.00 3.16
4883 7868 2.806945 TATTGGAAGCTCACCCCTTG 57.193 50.000 7.32 0.00 0.00 3.61
4884 7869 3.635591 CAATATTGGAAGCTCACCCCTT 58.364 45.455 7.62 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.