Multiple sequence alignment - TraesCS1D01G104900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G104900 chr1D 100.000 3445 0 0 1 3445 96904590 96908034 0.000000e+00 6362.0
1 TraesCS1D01G104900 chr1D 96.961 362 9 1 5 364 96771922 96772283 1.060000e-169 606.0
2 TraesCS1D01G104900 chr1B 92.138 2442 168 16 346 2782 156606523 156604101 0.000000e+00 3424.0
3 TraesCS1D01G104900 chr1B 88.743 684 51 11 2776 3444 156603396 156602724 0.000000e+00 813.0
4 TraesCS1D01G104900 chr1B 74.263 1119 238 31 1136 2231 583425542 583424451 3.180000e-115 425.0
5 TraesCS1D01G104900 chr1A 93.312 1914 121 5 363 2272 91415664 91417574 0.000000e+00 2819.0
6 TraesCS1D01G104900 chr1A 89.941 676 57 10 2776 3443 91419122 91419794 0.000000e+00 861.0
7 TraesCS1D01G104900 chr1A 93.785 531 26 5 2253 2782 91417893 91418417 0.000000e+00 791.0
8 TraesCS1D01G104900 chr2D 96.438 365 10 2 5 367 349193161 349192798 1.770000e-167 599.0
9 TraesCS1D01G104900 chr2D 96.133 362 11 2 5 364 351766592 351766232 3.830000e-164 588.0
10 TraesCS1D01G104900 chr5D 96.133 362 12 1 5 364 416439597 416439958 1.060000e-164 590.0
11 TraesCS1D01G104900 chr5D 73.145 1240 304 19 1142 2358 498769430 498768197 5.320000e-113 418.0
12 TraesCS1D01G104900 chr6D 95.418 371 14 2 5 373 161957192 161956823 3.830000e-164 588.0
13 TraesCS1D01G104900 chr6D 95.616 365 14 1 5 367 232149129 232148765 4.950000e-163 584.0
14 TraesCS1D01G104900 chr4D 95.628 366 14 1 4 367 199015561 199015196 1.380000e-163 586.0
15 TraesCS1D01G104900 chr4D 95.868 363 11 3 5 364 310052260 310052621 4.950000e-163 584.0
16 TraesCS1D01G104900 chr7D 95.628 366 12 3 5 367 83742656 83742292 4.950000e-163 584.0
17 TraesCS1D01G104900 chr3A 77.358 159 31 5 1136 1290 698733304 698733461 4.740000e-14 89.8
18 TraesCS1D01G104900 chr3D 76.730 159 32 5 1136 1290 564144402 564144559 2.200000e-12 84.2
19 TraesCS1D01G104900 chr3B 76.800 125 29 0 1136 1260 751751491 751751615 1.720000e-08 71.3
20 TraesCS1D01G104900 chr3B 77.311 119 25 2 1136 1253 751840035 751840152 6.170000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G104900 chr1D 96904590 96908034 3444 False 6362.000000 6362 100.0000 1 3445 1 chr1D.!!$F2 3444
1 TraesCS1D01G104900 chr1B 156602724 156606523 3799 True 2118.500000 3424 90.4405 346 3444 2 chr1B.!!$R2 3098
2 TraesCS1D01G104900 chr1B 583424451 583425542 1091 True 425.000000 425 74.2630 1136 2231 1 chr1B.!!$R1 1095
3 TraesCS1D01G104900 chr1A 91415664 91419794 4130 False 1490.333333 2819 92.3460 363 3443 3 chr1A.!!$F1 3080
4 TraesCS1D01G104900 chr5D 498768197 498769430 1233 True 418.000000 418 73.1450 1142 2358 1 chr5D.!!$R1 1216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.031721 AGCACTTTGAGCAAGCAAGC 59.968 50.0 0.00 0.00 35.65 4.01 F
262 263 0.036732 TCTTGTCCATGCCACTCCAC 59.963 55.0 0.00 0.00 0.00 4.02 F
263 264 0.037303 CTTGTCCATGCCACTCCACT 59.963 55.0 0.00 0.00 0.00 4.00 F
354 355 0.038744 AATCACCCAGGGAGCACTTG 59.961 55.0 14.54 0.00 0.00 3.16 F
361 362 0.595095 CAGGGAGCACTTGTGCTTTC 59.405 55.0 26.08 20.38 46.36 2.62 F
2232 2266 0.111061 ACTGGCAATCTGGTCAAGCA 59.889 50.0 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1034 1039 0.179000 CAGGATGACTACTGTGGGCC 59.821 60.000 0.00 0.0 39.69 5.80 R
1333 1338 1.207329 GGTGTTCACTAGAAGGCGGAT 59.793 52.381 0.00 0.0 33.63 4.18 R
1607 1612 1.741770 CTCACACTGTTAGGGCCGC 60.742 63.158 0.00 0.0 0.00 6.53 R
1863 1880 1.971149 AGACCTCCACATGATTCCCA 58.029 50.000 0.00 0.0 0.00 4.37 R
2315 2687 2.156504 CGTCGCCATCAGAATATGCTTC 59.843 50.000 0.00 0.0 0.00 3.86 R
3061 4164 0.038892 CATCGGTTTGCTTGCAGCTT 60.039 50.000 9.12 0.0 42.97 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.986904 GGAAGAGTTTGACTATAGGTTTGG 57.013 41.667 4.43 0.00 0.00 3.28
24 25 5.880887 GGAAGAGTTTGACTATAGGTTTGGG 59.119 44.000 4.43 0.00 0.00 4.12
25 26 6.296259 GGAAGAGTTTGACTATAGGTTTGGGA 60.296 42.308 4.43 0.00 0.00 4.37
26 27 6.051179 AGAGTTTGACTATAGGTTTGGGAC 57.949 41.667 4.43 0.00 0.00 4.46
27 28 5.546499 AGAGTTTGACTATAGGTTTGGGACA 59.454 40.000 4.43 0.00 0.00 4.02
28 29 6.215636 AGAGTTTGACTATAGGTTTGGGACAT 59.784 38.462 4.43 0.00 39.30 3.06
29 30 7.402071 AGAGTTTGACTATAGGTTTGGGACATA 59.598 37.037 4.43 0.00 39.30 2.29
30 31 8.102484 AGTTTGACTATAGGTTTGGGACATAT 57.898 34.615 4.43 0.00 39.30 1.78
31 32 7.993183 AGTTTGACTATAGGTTTGGGACATATG 59.007 37.037 4.43 0.00 39.30 1.78
32 33 7.446106 TTGACTATAGGTTTGGGACATATGT 57.554 36.000 8.43 8.43 39.30 2.29
33 34 6.826668 TGACTATAGGTTTGGGACATATGTG 58.173 40.000 14.43 0.00 39.30 3.21
34 35 6.183361 TGACTATAGGTTTGGGACATATGTGG 60.183 42.308 14.43 0.00 39.30 4.17
35 36 5.908831 ACTATAGGTTTGGGACATATGTGGA 59.091 40.000 14.43 0.00 39.30 4.02
36 37 5.725551 ATAGGTTTGGGACATATGTGGAA 57.274 39.130 14.43 0.00 39.30 3.53
37 38 4.396357 AGGTTTGGGACATATGTGGAAA 57.604 40.909 14.43 6.28 39.30 3.13
38 39 4.946646 AGGTTTGGGACATATGTGGAAAT 58.053 39.130 14.43 0.00 39.30 2.17
39 40 4.711355 AGGTTTGGGACATATGTGGAAATG 59.289 41.667 14.43 0.00 39.30 2.32
40 41 4.709397 GGTTTGGGACATATGTGGAAATGA 59.291 41.667 14.43 0.00 39.30 2.57
41 42 5.163519 GGTTTGGGACATATGTGGAAATGAG 60.164 44.000 14.43 0.00 39.30 2.90
42 43 5.449297 TTGGGACATATGTGGAAATGAGA 57.551 39.130 14.43 0.00 39.30 3.27
43 44 5.449297 TGGGACATATGTGGAAATGAGAA 57.551 39.130 14.43 0.00 0.00 2.87
44 45 5.825532 TGGGACATATGTGGAAATGAGAAA 58.174 37.500 14.43 0.00 0.00 2.52
45 46 5.887598 TGGGACATATGTGGAAATGAGAAAG 59.112 40.000 14.43 0.00 0.00 2.62
46 47 5.888161 GGGACATATGTGGAAATGAGAAAGT 59.112 40.000 14.43 0.00 0.00 2.66
47 48 6.183360 GGGACATATGTGGAAATGAGAAAGTG 60.183 42.308 14.43 0.00 0.00 3.16
48 49 6.183360 GGACATATGTGGAAATGAGAAAGTGG 60.183 42.308 14.43 0.00 0.00 4.00
49 50 6.248433 ACATATGTGGAAATGAGAAAGTGGT 58.752 36.000 7.78 0.00 0.00 4.16
50 51 6.721208 ACATATGTGGAAATGAGAAAGTGGTT 59.279 34.615 7.78 0.00 0.00 3.67
51 52 4.916983 TGTGGAAATGAGAAAGTGGTTG 57.083 40.909 0.00 0.00 0.00 3.77
52 53 4.531854 TGTGGAAATGAGAAAGTGGTTGA 58.468 39.130 0.00 0.00 0.00 3.18
53 54 4.580167 TGTGGAAATGAGAAAGTGGTTGAG 59.420 41.667 0.00 0.00 0.00 3.02
54 55 4.022849 GTGGAAATGAGAAAGTGGTTGAGG 60.023 45.833 0.00 0.00 0.00 3.86
55 56 3.507622 GGAAATGAGAAAGTGGTTGAGGG 59.492 47.826 0.00 0.00 0.00 4.30
56 57 2.206576 ATGAGAAAGTGGTTGAGGGC 57.793 50.000 0.00 0.00 0.00 5.19
57 58 1.140312 TGAGAAAGTGGTTGAGGGCT 58.860 50.000 0.00 0.00 0.00 5.19
58 59 1.202806 TGAGAAAGTGGTTGAGGGCTG 60.203 52.381 0.00 0.00 0.00 4.85
59 60 0.111253 AGAAAGTGGTTGAGGGCTGG 59.889 55.000 0.00 0.00 0.00 4.85
60 61 0.110486 GAAAGTGGTTGAGGGCTGGA 59.890 55.000 0.00 0.00 0.00 3.86
61 62 0.111253 AAAGTGGTTGAGGGCTGGAG 59.889 55.000 0.00 0.00 0.00 3.86
62 63 2.360475 GTGGTTGAGGGCTGGAGC 60.360 66.667 0.00 0.00 41.14 4.70
63 64 2.853542 TGGTTGAGGGCTGGAGCA 60.854 61.111 0.20 0.00 44.36 4.26
64 65 2.233566 TGGTTGAGGGCTGGAGCAT 61.234 57.895 0.20 0.00 44.36 3.79
65 66 0.913934 TGGTTGAGGGCTGGAGCATA 60.914 55.000 0.20 0.00 44.36 3.14
66 67 0.475906 GGTTGAGGGCTGGAGCATAT 59.524 55.000 0.20 0.00 44.36 1.78
67 68 1.544314 GGTTGAGGGCTGGAGCATATC 60.544 57.143 0.20 0.00 44.36 1.63
68 69 1.141657 GTTGAGGGCTGGAGCATATCA 59.858 52.381 0.20 0.00 44.36 2.15
69 70 0.761187 TGAGGGCTGGAGCATATCAC 59.239 55.000 0.20 0.00 44.36 3.06
70 71 1.055040 GAGGGCTGGAGCATATCACT 58.945 55.000 0.20 0.00 44.36 3.41
71 72 2.251818 GAGGGCTGGAGCATATCACTA 58.748 52.381 0.20 0.00 44.36 2.74
72 73 2.634940 GAGGGCTGGAGCATATCACTAA 59.365 50.000 0.20 0.00 44.36 2.24
73 74 2.636893 AGGGCTGGAGCATATCACTAAG 59.363 50.000 0.20 0.00 44.36 2.18
74 75 2.421619 GGCTGGAGCATATCACTAAGC 58.578 52.381 0.20 0.00 44.36 3.09
75 76 2.224378 GGCTGGAGCATATCACTAAGCA 60.224 50.000 0.20 0.00 44.36 3.91
76 77 2.805099 GCTGGAGCATATCACTAAGCAC 59.195 50.000 0.00 0.00 41.59 4.40
77 78 3.494048 GCTGGAGCATATCACTAAGCACT 60.494 47.826 0.00 0.00 41.59 4.40
78 79 4.701765 CTGGAGCATATCACTAAGCACTT 58.298 43.478 0.00 0.00 0.00 3.16
79 80 5.102953 TGGAGCATATCACTAAGCACTTT 57.897 39.130 0.00 0.00 0.00 2.66
80 81 4.877823 TGGAGCATATCACTAAGCACTTTG 59.122 41.667 0.00 0.00 0.00 2.77
81 82 5.118990 GGAGCATATCACTAAGCACTTTGA 58.881 41.667 0.00 0.00 0.00 2.69
82 83 5.236047 GGAGCATATCACTAAGCACTTTGAG 59.764 44.000 0.00 0.00 0.00 3.02
83 84 4.574013 AGCATATCACTAAGCACTTTGAGC 59.426 41.667 0.00 0.00 0.00 4.26
84 85 4.333649 GCATATCACTAAGCACTTTGAGCA 59.666 41.667 0.00 0.00 0.00 4.26
85 86 5.163723 GCATATCACTAAGCACTTTGAGCAA 60.164 40.000 0.00 0.00 0.00 3.91
86 87 6.484540 CATATCACTAAGCACTTTGAGCAAG 58.515 40.000 0.00 0.00 38.64 4.01
87 88 2.549754 TCACTAAGCACTTTGAGCAAGC 59.450 45.455 0.00 0.00 35.65 4.01
88 89 2.291465 CACTAAGCACTTTGAGCAAGCA 59.709 45.455 0.00 0.00 35.65 3.91
89 90 2.951642 ACTAAGCACTTTGAGCAAGCAA 59.048 40.909 0.00 0.00 35.65 3.91
90 91 2.503920 AAGCACTTTGAGCAAGCAAG 57.496 45.000 0.00 0.00 35.65 4.01
91 92 0.031721 AGCACTTTGAGCAAGCAAGC 59.968 50.000 0.00 0.00 35.65 4.01
92 93 0.942884 GCACTTTGAGCAAGCAAGCC 60.943 55.000 0.00 0.00 35.65 4.35
93 94 0.386476 CACTTTGAGCAAGCAAGCCA 59.614 50.000 0.00 0.00 35.65 4.75
94 95 1.000506 CACTTTGAGCAAGCAAGCCAT 59.999 47.619 0.00 0.00 35.65 4.40
95 96 1.690352 ACTTTGAGCAAGCAAGCCATT 59.310 42.857 0.00 0.00 35.65 3.16
96 97 2.892852 ACTTTGAGCAAGCAAGCCATTA 59.107 40.909 0.00 0.00 35.65 1.90
97 98 3.321682 ACTTTGAGCAAGCAAGCCATTAA 59.678 39.130 0.00 0.00 35.65 1.40
98 99 3.581024 TTGAGCAAGCAAGCCATTAAG 57.419 42.857 0.00 0.00 34.23 1.85
99 100 1.203052 TGAGCAAGCAAGCCATTAAGC 59.797 47.619 0.00 0.00 34.23 3.09
100 101 1.203052 GAGCAAGCAAGCCATTAAGCA 59.797 47.619 0.00 0.00 34.23 3.91
101 102 1.619827 AGCAAGCAAGCCATTAAGCAA 59.380 42.857 0.00 0.00 34.23 3.91
102 103 1.728425 GCAAGCAAGCCATTAAGCAAC 59.272 47.619 0.00 0.00 34.23 4.17
103 104 2.867251 GCAAGCAAGCCATTAAGCAACA 60.867 45.455 0.00 0.00 34.23 3.33
104 105 2.730550 AGCAAGCCATTAAGCAACAC 57.269 45.000 0.00 0.00 34.23 3.32
105 106 1.273327 AGCAAGCCATTAAGCAACACC 59.727 47.619 0.00 0.00 34.23 4.16
106 107 1.273327 GCAAGCCATTAAGCAACACCT 59.727 47.619 0.00 0.00 34.23 4.00
107 108 2.672195 GCAAGCCATTAAGCAACACCTC 60.672 50.000 0.00 0.00 34.23 3.85
108 109 2.557924 CAAGCCATTAAGCAACACCTCA 59.442 45.455 0.00 0.00 34.23 3.86
109 110 3.091633 AGCCATTAAGCAACACCTCAT 57.908 42.857 0.00 0.00 34.23 2.90
110 111 3.019564 AGCCATTAAGCAACACCTCATC 58.980 45.455 0.00 0.00 34.23 2.92
111 112 2.099756 GCCATTAAGCAACACCTCATCC 59.900 50.000 0.00 0.00 0.00 3.51
112 113 2.689983 CCATTAAGCAACACCTCATCCC 59.310 50.000 0.00 0.00 0.00 3.85
113 114 2.507407 TTAAGCAACACCTCATCCCC 57.493 50.000 0.00 0.00 0.00 4.81
114 115 1.668826 TAAGCAACACCTCATCCCCT 58.331 50.000 0.00 0.00 0.00 4.79
115 116 0.779997 AAGCAACACCTCATCCCCTT 59.220 50.000 0.00 0.00 0.00 3.95
116 117 0.779997 AGCAACACCTCATCCCCTTT 59.220 50.000 0.00 0.00 0.00 3.11
117 118 1.147817 AGCAACACCTCATCCCCTTTT 59.852 47.619 0.00 0.00 0.00 2.27
118 119 2.378547 AGCAACACCTCATCCCCTTTTA 59.621 45.455 0.00 0.00 0.00 1.52
119 120 3.161866 GCAACACCTCATCCCCTTTTAA 58.838 45.455 0.00 0.00 0.00 1.52
120 121 3.769300 GCAACACCTCATCCCCTTTTAAT 59.231 43.478 0.00 0.00 0.00 1.40
121 122 4.953579 GCAACACCTCATCCCCTTTTAATA 59.046 41.667 0.00 0.00 0.00 0.98
122 123 5.067805 GCAACACCTCATCCCCTTTTAATAG 59.932 44.000 0.00 0.00 0.00 1.73
123 124 6.187682 CAACACCTCATCCCCTTTTAATAGT 58.812 40.000 0.00 0.00 0.00 2.12
124 125 7.343357 CAACACCTCATCCCCTTTTAATAGTA 58.657 38.462 0.00 0.00 0.00 1.82
125 126 7.707467 ACACCTCATCCCCTTTTAATAGTAT 57.293 36.000 0.00 0.00 0.00 2.12
126 127 8.114301 ACACCTCATCCCCTTTTAATAGTATT 57.886 34.615 0.17 0.17 0.00 1.89
127 128 7.998964 ACACCTCATCCCCTTTTAATAGTATTG 59.001 37.037 5.61 0.00 0.00 1.90
128 129 7.448469 CACCTCATCCCCTTTTAATAGTATTGG 59.552 40.741 5.61 0.00 0.00 3.16
129 130 6.434340 CCTCATCCCCTTTTAATAGTATTGGC 59.566 42.308 5.61 0.00 0.00 4.52
130 131 7.161715 TCATCCCCTTTTAATAGTATTGGCT 57.838 36.000 5.61 0.00 0.00 4.75
131 132 7.591821 TCATCCCCTTTTAATAGTATTGGCTT 58.408 34.615 5.61 0.00 0.00 4.35
132 133 8.065007 TCATCCCCTTTTAATAGTATTGGCTTT 58.935 33.333 5.61 0.00 0.00 3.51
133 134 8.704668 CATCCCCTTTTAATAGTATTGGCTTTT 58.295 33.333 5.61 0.00 0.00 2.27
134 135 8.673456 TCCCCTTTTAATAGTATTGGCTTTTT 57.327 30.769 5.61 0.00 0.00 1.94
135 136 8.755028 TCCCCTTTTAATAGTATTGGCTTTTTC 58.245 33.333 5.61 0.00 0.00 2.29
136 137 8.758829 CCCCTTTTAATAGTATTGGCTTTTTCT 58.241 33.333 5.61 0.00 0.00 2.52
144 145 8.910351 ATAGTATTGGCTTTTTCTATGGACTC 57.090 34.615 0.00 0.00 0.00 3.36
145 146 6.721318 AGTATTGGCTTTTTCTATGGACTCA 58.279 36.000 0.00 0.00 0.00 3.41
146 147 7.175104 AGTATTGGCTTTTTCTATGGACTCAA 58.825 34.615 0.00 0.00 0.00 3.02
147 148 7.836183 AGTATTGGCTTTTTCTATGGACTCAAT 59.164 33.333 0.00 0.00 0.00 2.57
148 149 5.902613 TGGCTTTTTCTATGGACTCAATG 57.097 39.130 0.00 0.00 0.00 2.82
149 150 5.324409 TGGCTTTTTCTATGGACTCAATGT 58.676 37.500 0.00 0.00 0.00 2.71
150 151 5.183713 TGGCTTTTTCTATGGACTCAATGTG 59.816 40.000 0.00 0.00 0.00 3.21
151 152 5.415701 GGCTTTTTCTATGGACTCAATGTGA 59.584 40.000 0.00 0.00 0.00 3.58
152 153 6.096001 GGCTTTTTCTATGGACTCAATGTGAT 59.904 38.462 0.00 0.00 0.00 3.06
153 154 7.192232 GCTTTTTCTATGGACTCAATGTGATC 58.808 38.462 0.00 0.00 0.00 2.92
154 155 7.066766 GCTTTTTCTATGGACTCAATGTGATCT 59.933 37.037 0.00 0.00 0.00 2.75
155 156 8.868522 TTTTTCTATGGACTCAATGTGATCTT 57.131 30.769 0.00 0.00 0.00 2.40
156 157 7.854557 TTTCTATGGACTCAATGTGATCTTG 57.145 36.000 0.00 0.00 0.00 3.02
157 158 5.922053 TCTATGGACTCAATGTGATCTTGG 58.078 41.667 0.00 0.00 0.00 3.61
158 159 4.849813 ATGGACTCAATGTGATCTTGGA 57.150 40.909 0.00 0.00 0.00 3.53
159 160 4.849813 TGGACTCAATGTGATCTTGGAT 57.150 40.909 0.00 0.00 0.00 3.41
160 161 4.774124 TGGACTCAATGTGATCTTGGATC 58.226 43.478 0.00 1.04 0.00 3.36
161 162 4.225717 TGGACTCAATGTGATCTTGGATCA 59.774 41.667 6.17 6.17 0.00 2.92
162 163 4.574013 GGACTCAATGTGATCTTGGATCAC 59.426 45.833 24.99 24.99 46.28 3.06
163 164 5.426504 GACTCAATGTGATCTTGGATCACT 58.573 41.667 28.84 17.82 46.25 3.41
164 165 6.407412 GGACTCAATGTGATCTTGGATCACTA 60.407 42.308 28.84 20.13 46.25 2.74
165 166 6.950842 ACTCAATGTGATCTTGGATCACTAA 58.049 36.000 28.84 17.35 46.25 2.24
166 167 7.397221 ACTCAATGTGATCTTGGATCACTAAA 58.603 34.615 28.84 16.83 46.25 1.85
167 168 7.884877 ACTCAATGTGATCTTGGATCACTAAAA 59.115 33.333 28.84 16.57 46.25 1.52
168 169 8.812513 TCAATGTGATCTTGGATCACTAAAAT 57.187 30.769 28.84 17.65 46.25 1.82
169 170 8.680001 TCAATGTGATCTTGGATCACTAAAATG 58.320 33.333 28.84 21.65 46.25 2.32
170 171 8.680001 CAATGTGATCTTGGATCACTAAAATGA 58.320 33.333 28.84 15.25 46.25 2.57
171 172 8.812513 ATGTGATCTTGGATCACTAAAATGAA 57.187 30.769 28.84 14.73 46.25 2.57
172 173 8.634335 TGTGATCTTGGATCACTAAAATGAAA 57.366 30.769 28.84 12.16 46.25 2.69
173 174 9.076781 TGTGATCTTGGATCACTAAAATGAAAA 57.923 29.630 28.84 11.63 46.25 2.29
193 194 9.635520 ATGAAAATGTAGAATCTTGAGCTTTTG 57.364 29.630 0.00 0.00 0.00 2.44
194 195 8.849168 TGAAAATGTAGAATCTTGAGCTTTTGA 58.151 29.630 0.00 0.00 0.00 2.69
195 196 9.339492 GAAAATGTAGAATCTTGAGCTTTTGAG 57.661 33.333 0.00 0.00 0.00 3.02
196 197 5.869753 TGTAGAATCTTGAGCTTTTGAGC 57.130 39.130 0.00 0.00 0.00 4.26
198 199 6.000219 TGTAGAATCTTGAGCTTTTGAGCTT 59.000 36.000 2.06 0.00 46.36 3.74
199 200 6.488006 TGTAGAATCTTGAGCTTTTGAGCTTT 59.512 34.615 2.06 0.00 46.36 3.51
200 201 6.402456 AGAATCTTGAGCTTTTGAGCTTTT 57.598 33.333 2.06 0.00 46.36 2.27
201 202 6.214399 AGAATCTTGAGCTTTTGAGCTTTTG 58.786 36.000 2.06 0.00 46.36 2.44
202 203 3.709987 TCTTGAGCTTTTGAGCTTTTGC 58.290 40.909 2.06 0.00 46.36 3.68
215 216 2.951726 GCTTTTGCCAATCTTCTGTCC 58.048 47.619 0.00 0.00 40.15 4.02
216 217 2.560105 GCTTTTGCCAATCTTCTGTCCT 59.440 45.455 0.00 0.00 40.15 3.85
217 218 3.006217 GCTTTTGCCAATCTTCTGTCCTT 59.994 43.478 0.00 0.00 40.15 3.36
218 219 4.553323 CTTTTGCCAATCTTCTGTCCTTG 58.447 43.478 0.00 0.00 0.00 3.61
219 220 2.205022 TGCCAATCTTCTGTCCTTGG 57.795 50.000 0.00 0.00 40.89 3.61
220 221 1.425066 TGCCAATCTTCTGTCCTTGGT 59.575 47.619 0.00 0.00 40.23 3.67
221 222 2.642311 TGCCAATCTTCTGTCCTTGGTA 59.358 45.455 0.00 0.00 40.23 3.25
222 223 3.266772 TGCCAATCTTCTGTCCTTGGTAT 59.733 43.478 0.00 0.00 40.23 2.73
223 224 3.879892 GCCAATCTTCTGTCCTTGGTATC 59.120 47.826 0.00 0.00 40.23 2.24
224 225 4.384647 GCCAATCTTCTGTCCTTGGTATCT 60.385 45.833 0.00 0.00 40.23 1.98
225 226 5.749462 CCAATCTTCTGTCCTTGGTATCTT 58.251 41.667 0.00 0.00 34.69 2.40
226 227 5.587844 CCAATCTTCTGTCCTTGGTATCTTG 59.412 44.000 0.00 0.00 34.69 3.02
227 228 6.409704 CAATCTTCTGTCCTTGGTATCTTGA 58.590 40.000 0.00 0.00 0.00 3.02
228 229 6.627087 ATCTTCTGTCCTTGGTATCTTGAA 57.373 37.500 0.00 0.00 0.00 2.69
229 230 6.042638 TCTTCTGTCCTTGGTATCTTGAAG 57.957 41.667 0.00 0.00 0.00 3.02
230 231 4.826274 TCTGTCCTTGGTATCTTGAAGG 57.174 45.455 0.00 0.00 38.10 3.46
231 232 3.519510 TCTGTCCTTGGTATCTTGAAGGG 59.480 47.826 0.00 0.00 37.45 3.95
232 233 2.576191 TGTCCTTGGTATCTTGAAGGGG 59.424 50.000 0.00 0.00 37.45 4.79
233 234 2.576648 GTCCTTGGTATCTTGAAGGGGT 59.423 50.000 0.00 0.00 37.45 4.95
234 235 3.010250 GTCCTTGGTATCTTGAAGGGGTT 59.990 47.826 0.00 0.00 37.45 4.11
235 236 3.265995 TCCTTGGTATCTTGAAGGGGTTC 59.734 47.826 0.00 0.00 37.45 3.62
236 237 3.621558 CTTGGTATCTTGAAGGGGTTCC 58.378 50.000 0.00 0.00 0.00 3.62
237 238 2.638325 TGGTATCTTGAAGGGGTTCCA 58.362 47.619 0.00 0.00 34.83 3.53
238 239 2.307686 TGGTATCTTGAAGGGGTTCCAC 59.692 50.000 0.00 0.00 34.83 4.02
239 240 2.307686 GGTATCTTGAAGGGGTTCCACA 59.692 50.000 0.00 0.00 34.83 4.17
240 241 3.053619 GGTATCTTGAAGGGGTTCCACAT 60.054 47.826 0.00 0.00 34.83 3.21
241 242 2.879103 TCTTGAAGGGGTTCCACATC 57.121 50.000 0.00 0.00 34.83 3.06
242 243 1.354368 TCTTGAAGGGGTTCCACATCC 59.646 52.381 0.00 0.00 34.83 3.51
243 244 1.355720 CTTGAAGGGGTTCCACATCCT 59.644 52.381 0.00 0.00 34.83 3.24
244 245 0.991920 TGAAGGGGTTCCACATCCTC 59.008 55.000 0.00 0.00 34.83 3.71
245 246 1.290134 GAAGGGGTTCCACATCCTCT 58.710 55.000 0.00 0.00 35.87 3.69
246 247 1.636003 GAAGGGGTTCCACATCCTCTT 59.364 52.381 0.00 0.00 45.92 2.85
247 248 0.995024 AGGGGTTCCACATCCTCTTG 59.005 55.000 0.00 0.00 28.96 3.02
248 249 0.698818 GGGGTTCCACATCCTCTTGT 59.301 55.000 0.00 0.00 0.00 3.16
249 250 1.340114 GGGGTTCCACATCCTCTTGTC 60.340 57.143 0.00 0.00 0.00 3.18
250 251 1.340114 GGGTTCCACATCCTCTTGTCC 60.340 57.143 0.00 0.00 0.00 4.02
251 252 1.351017 GGTTCCACATCCTCTTGTCCA 59.649 52.381 0.00 0.00 0.00 4.02
252 253 2.025887 GGTTCCACATCCTCTTGTCCAT 60.026 50.000 0.00 0.00 0.00 3.41
253 254 3.012518 GTTCCACATCCTCTTGTCCATG 58.987 50.000 0.00 0.00 0.00 3.66
254 255 1.065199 TCCACATCCTCTTGTCCATGC 60.065 52.381 0.00 0.00 0.00 4.06
255 256 1.386533 CACATCCTCTTGTCCATGCC 58.613 55.000 0.00 0.00 0.00 4.40
256 257 0.994247 ACATCCTCTTGTCCATGCCA 59.006 50.000 0.00 0.00 0.00 4.92
257 258 1.340405 ACATCCTCTTGTCCATGCCAC 60.340 52.381 0.00 0.00 0.00 5.01
258 259 1.064906 CATCCTCTTGTCCATGCCACT 60.065 52.381 0.00 0.00 0.00 4.00
259 260 0.615331 TCCTCTTGTCCATGCCACTC 59.385 55.000 0.00 0.00 0.00 3.51
260 261 0.393537 CCTCTTGTCCATGCCACTCC 60.394 60.000 0.00 0.00 0.00 3.85
261 262 0.325933 CTCTTGTCCATGCCACTCCA 59.674 55.000 0.00 0.00 0.00 3.86
262 263 0.036732 TCTTGTCCATGCCACTCCAC 59.963 55.000 0.00 0.00 0.00 4.02
263 264 0.037303 CTTGTCCATGCCACTCCACT 59.963 55.000 0.00 0.00 0.00 4.00
264 265 0.250858 TTGTCCATGCCACTCCACTG 60.251 55.000 0.00 0.00 0.00 3.66
265 266 1.376466 GTCCATGCCACTCCACTGT 59.624 57.895 0.00 0.00 0.00 3.55
266 267 0.250901 GTCCATGCCACTCCACTGTT 60.251 55.000 0.00 0.00 0.00 3.16
267 268 0.250858 TCCATGCCACTCCACTGTTG 60.251 55.000 0.00 0.00 0.00 3.33
268 269 0.250858 CCATGCCACTCCACTGTTGA 60.251 55.000 0.00 0.00 0.00 3.18
269 270 1.608055 CATGCCACTCCACTGTTGAA 58.392 50.000 0.00 0.00 0.00 2.69
270 271 1.267806 CATGCCACTCCACTGTTGAAC 59.732 52.381 0.00 0.00 0.00 3.18
271 272 0.546122 TGCCACTCCACTGTTGAACT 59.454 50.000 0.00 0.00 0.00 3.01
272 273 1.230324 GCCACTCCACTGTTGAACTC 58.770 55.000 0.00 0.00 0.00 3.01
273 274 1.475034 GCCACTCCACTGTTGAACTCA 60.475 52.381 0.00 0.00 0.00 3.41
274 275 2.811873 GCCACTCCACTGTTGAACTCAT 60.812 50.000 0.00 0.00 0.00 2.90
275 276 3.070018 CCACTCCACTGTTGAACTCATC 58.930 50.000 0.00 0.00 0.00 2.92
276 277 3.244353 CCACTCCACTGTTGAACTCATCT 60.244 47.826 0.00 0.00 0.00 2.90
277 278 3.744942 CACTCCACTGTTGAACTCATCTG 59.255 47.826 0.00 0.00 0.00 2.90
278 279 3.643320 ACTCCACTGTTGAACTCATCTGA 59.357 43.478 0.00 0.00 0.00 3.27
279 280 4.101585 ACTCCACTGTTGAACTCATCTGAA 59.898 41.667 0.00 0.00 0.00 3.02
280 281 5.034852 TCCACTGTTGAACTCATCTGAAA 57.965 39.130 0.00 0.00 0.00 2.69
281 282 5.624159 TCCACTGTTGAACTCATCTGAAAT 58.376 37.500 0.00 0.00 0.00 2.17
282 283 6.768483 TCCACTGTTGAACTCATCTGAAATA 58.232 36.000 0.00 0.00 0.00 1.40
283 284 7.397221 TCCACTGTTGAACTCATCTGAAATAT 58.603 34.615 0.00 0.00 0.00 1.28
284 285 8.539544 TCCACTGTTGAACTCATCTGAAATATA 58.460 33.333 0.00 0.00 0.00 0.86
285 286 8.607459 CCACTGTTGAACTCATCTGAAATATAC 58.393 37.037 0.00 0.00 0.00 1.47
286 287 9.376075 CACTGTTGAACTCATCTGAAATATACT 57.624 33.333 0.00 0.00 0.00 2.12
310 311 9.877178 ACTAGATGAAACTATTAGTCCAACAAG 57.123 33.333 0.00 1.86 0.00 3.16
313 314 8.816894 AGATGAAACTATTAGTCCAACAAGAGA 58.183 33.333 0.00 0.00 0.00 3.10
314 315 9.606631 GATGAAACTATTAGTCCAACAAGAGAT 57.393 33.333 0.00 0.00 0.00 2.75
341 342 9.651913 ATGTTGACATTAATTACCAAAATCACC 57.348 29.630 0.00 0.00 31.37 4.02
342 343 8.091449 TGTTGACATTAATTACCAAAATCACCC 58.909 33.333 0.00 0.00 0.00 4.61
343 344 7.782897 TGACATTAATTACCAAAATCACCCA 57.217 32.000 0.00 0.00 0.00 4.51
344 345 7.835822 TGACATTAATTACCAAAATCACCCAG 58.164 34.615 0.00 0.00 0.00 4.45
345 346 7.093552 TGACATTAATTACCAAAATCACCCAGG 60.094 37.037 0.00 0.00 0.00 4.45
346 347 6.156083 ACATTAATTACCAAAATCACCCAGGG 59.844 38.462 2.85 2.85 0.00 4.45
347 348 4.412060 AATTACCAAAATCACCCAGGGA 57.588 40.909 14.54 0.00 0.00 4.20
348 349 3.449746 TTACCAAAATCACCCAGGGAG 57.550 47.619 14.54 3.89 0.00 4.30
349 350 0.251787 ACCAAAATCACCCAGGGAGC 60.252 55.000 14.54 0.00 0.00 4.70
350 351 0.251742 CCAAAATCACCCAGGGAGCA 60.252 55.000 14.54 0.00 0.00 4.26
351 352 0.890683 CAAAATCACCCAGGGAGCAC 59.109 55.000 14.54 0.00 0.00 4.40
352 353 0.779997 AAAATCACCCAGGGAGCACT 59.220 50.000 14.54 0.00 0.00 4.40
353 354 0.779997 AAATCACCCAGGGAGCACTT 59.220 50.000 14.54 0.00 0.00 3.16
354 355 0.038744 AATCACCCAGGGAGCACTTG 59.961 55.000 14.54 0.00 0.00 3.16
355 356 1.136329 ATCACCCAGGGAGCACTTGT 61.136 55.000 14.54 0.00 0.00 3.16
356 357 1.601759 CACCCAGGGAGCACTTGTG 60.602 63.158 14.54 0.00 0.00 3.33
357 358 2.674380 CCCAGGGAGCACTTGTGC 60.674 66.667 16.98 16.98 0.00 4.57
359 360 1.228367 CCAGGGAGCACTTGTGCTT 60.228 57.895 26.08 10.63 46.36 3.91
360 361 0.825010 CCAGGGAGCACTTGTGCTTT 60.825 55.000 26.08 14.02 46.36 3.51
361 362 0.595095 CAGGGAGCACTTGTGCTTTC 59.405 55.000 26.08 20.38 46.36 2.62
378 379 4.552166 CTTTCAAGCTTTTCTTCGGTCA 57.448 40.909 0.00 0.00 31.27 4.02
435 436 1.377333 CCCCGACTTTGCTCCCTTC 60.377 63.158 0.00 0.00 0.00 3.46
477 478 9.709495 CTTCCTAGGAATAAAATCTCTGATGAG 57.291 37.037 24.48 2.79 36.29 2.90
486 488 6.968263 AAAATCTCTGATGAGGTCTCGATA 57.032 37.500 0.00 0.00 40.58 2.92
508 510 0.896923 TGGATTTGAGGCAACATGGC 59.103 50.000 0.00 0.00 44.10 4.40
524 526 0.975556 TGGCGACCTCATCCTTAGCA 60.976 55.000 0.00 0.00 0.00 3.49
526 528 0.747255 GCGACCTCATCCTTAGCAGA 59.253 55.000 0.00 0.00 0.00 4.26
551 553 3.041946 TGGAGAGAAGCTAAATCCCCTC 58.958 50.000 0.00 0.00 0.00 4.30
569 571 0.754472 TCCTTTCGTCGTCCACCTTT 59.246 50.000 0.00 0.00 0.00 3.11
570 572 0.865769 CCTTTCGTCGTCCACCTTTG 59.134 55.000 0.00 0.00 0.00 2.77
579 581 4.062991 GTCGTCCACCTTTGTAGTGAATT 58.937 43.478 0.00 0.00 37.42 2.17
628 630 8.637986 GTCTACTCTACATTGAATCTTCTGGAT 58.362 37.037 0.00 0.00 35.97 3.41
675 678 8.817092 TTTCCTTTTTCTTTGAGTCCTTCTAA 57.183 30.769 0.00 0.00 0.00 2.10
688 691 8.617290 TGAGTCCTTCTAAAAGTTTATTGTCC 57.383 34.615 0.00 0.00 0.00 4.02
690 693 9.232473 GAGTCCTTCTAAAAGTTTATTGTCCAT 57.768 33.333 0.00 0.00 0.00 3.41
745 748 3.009473 CCAATCTTCATATCCGACCCCAT 59.991 47.826 0.00 0.00 0.00 4.00
751 754 3.526899 TCATATCCGACCCCATACCAAT 58.473 45.455 0.00 0.00 0.00 3.16
771 774 0.798771 GCCAGCTCAACTCTACGACG 60.799 60.000 0.00 0.00 0.00 5.12
878 881 7.203218 GTCCTATTTGCAAAAAGAAGAGTTGT 58.797 34.615 17.19 0.00 0.00 3.32
947 951 1.534729 CTTTTCTTGGTCCTTCGGGG 58.465 55.000 0.00 0.00 35.37 5.73
968 972 4.959839 GGGCCCCTCTTACATTAAAAATGA 59.040 41.667 12.23 0.00 0.00 2.57
987 992 4.365514 TGAGAAAACAAGGATACAGGCA 57.634 40.909 0.00 0.00 41.41 4.75
1034 1039 3.447742 GAAGGGAAATTAATTGGCGCAG 58.552 45.455 10.83 0.00 0.00 5.18
1068 1073 4.389374 TCATCCTGTGACAAAAGGAAGAC 58.611 43.478 11.23 0.00 45.56 3.01
1081 1086 2.772077 GGAAGACTCCTCCCAACTTC 57.228 55.000 0.00 0.00 38.88 3.01
1097 1102 5.694006 CCCAACTTCTAGATCTAAGATTGCG 59.306 44.000 11.44 3.04 0.00 4.85
1112 1117 1.327303 TTGCGAGCCTCCAACATTTT 58.673 45.000 0.00 0.00 0.00 1.82
1194 1199 2.603473 TGCCTACTGGACACCGCT 60.603 61.111 0.00 0.00 34.57 5.52
1330 1335 1.139058 ACTATTCATCCCACGGTGAGC 59.861 52.381 10.28 0.00 0.00 4.26
1333 1338 1.763546 TTCATCCCACGGTGAGCACA 61.764 55.000 10.28 0.00 0.00 4.57
1393 1398 1.974236 GCAGGGATATGCCACTACTCT 59.026 52.381 16.46 0.00 40.43 3.24
1607 1612 4.321304 CGACACTAGGAAGCTATACATGGG 60.321 50.000 0.00 0.00 0.00 4.00
1615 1620 1.550130 GCTATACATGGGCGGCCCTA 61.550 60.000 36.21 23.59 45.70 3.53
1622 1627 4.029809 GGGCGGCCCTAACAGTGT 62.030 66.667 30.86 0.00 41.34 3.55
1714 1719 2.847234 ACGGCCACCAAGGACTGA 60.847 61.111 2.24 0.00 46.64 3.41
1767 1772 1.687563 TCGCCGATCTAATGACTCCA 58.312 50.000 0.00 0.00 0.00 3.86
1863 1880 6.008960 AGAAATTCTGGTCATCTTCAAGCTT 58.991 36.000 0.00 0.00 0.00 3.74
1871 1888 4.012374 GTCATCTTCAAGCTTGGGAATCA 58.988 43.478 25.73 2.68 0.00 2.57
2143 2177 2.107378 TCAGTGAACCTAAACATGCCCA 59.893 45.455 0.00 0.00 0.00 5.36
2232 2266 0.111061 ACTGGCAATCTGGTCAAGCA 59.889 50.000 0.00 0.00 0.00 3.91
2245 2279 3.146066 GGTCAAGCATCACAGGTGTTAA 58.854 45.455 0.00 0.00 0.00 2.01
2385 2760 6.616947 TGTGTTGTGTTAAGCTTTATATGGC 58.383 36.000 3.20 0.00 0.00 4.40
2386 2761 6.432783 TGTGTTGTGTTAAGCTTTATATGGCT 59.567 34.615 3.20 0.00 40.85 4.75
2387 2762 6.747280 GTGTTGTGTTAAGCTTTATATGGCTG 59.253 38.462 3.20 0.00 38.91 4.85
2388 2763 6.657117 TGTTGTGTTAAGCTTTATATGGCTGA 59.343 34.615 3.20 0.00 38.91 4.26
2389 2764 7.339212 TGTTGTGTTAAGCTTTATATGGCTGAT 59.661 33.333 3.20 0.00 38.91 2.90
2390 2765 7.496529 TGTGTTAAGCTTTATATGGCTGATC 57.503 36.000 3.20 0.00 38.91 2.92
2391 2766 7.282585 TGTGTTAAGCTTTATATGGCTGATCT 58.717 34.615 3.20 0.00 38.91 2.75
2392 2767 8.428852 TGTGTTAAGCTTTATATGGCTGATCTA 58.571 33.333 3.20 0.00 38.91 1.98
2458 2841 3.432517 GTGCAACAAACAACTGGCA 57.567 47.368 0.00 0.00 36.32 4.92
2531 2914 9.900710 GAAGCTTTATCATAGAGATTCGTTCTA 57.099 33.333 0.00 0.00 38.19 2.10
2578 2961 8.985315 ATGTATCATGTCCATGTCTGTTTTAT 57.015 30.769 7.13 0.00 39.72 1.40
2637 3020 5.197451 ACATGAAGTGGTAACTTGTTTCCA 58.803 37.500 0.00 7.59 46.84 3.53
2661 3045 3.733024 TTCTTTTTATGTGCGCCTACG 57.267 42.857 4.18 0.00 44.07 3.51
2720 3104 6.325596 TCTAAATCCGCATCATATTCTCTCG 58.674 40.000 0.00 0.00 0.00 4.04
2722 3106 2.239400 TCCGCATCATATTCTCTCGGT 58.761 47.619 0.00 0.00 36.99 4.69
2724 3108 3.824443 TCCGCATCATATTCTCTCGGTTA 59.176 43.478 0.00 0.00 36.99 2.85
2725 3109 4.279922 TCCGCATCATATTCTCTCGGTTAA 59.720 41.667 0.00 0.00 36.99 2.01
2726 3110 4.623167 CCGCATCATATTCTCTCGGTTAAG 59.377 45.833 0.00 0.00 0.00 1.85
2782 3166 7.862274 TCTCTACCCATGTCAATTATCTCAT 57.138 36.000 0.00 0.00 0.00 2.90
2788 3887 6.996879 ACCCATGTCAATTATCTCATTCTCTG 59.003 38.462 0.00 0.00 0.00 3.35
2795 3894 9.770097 GTCAATTATCTCATTCTCTGTCCAATA 57.230 33.333 0.00 0.00 0.00 1.90
2818 3917 3.531262 ACGATTCAAGTGTTTAACGGC 57.469 42.857 0.00 0.00 0.00 5.68
2850 3949 2.757894 TTGGTTGCCTCCCAAACTTA 57.242 45.000 0.00 0.00 41.81 2.24
2874 3976 6.296803 ACGAATTAAGACCAAACCTTCTTCT 58.703 36.000 0.00 0.00 33.96 2.85
2880 3982 3.981375 AGACCAAACCTTCTTCTAGGGTT 59.019 43.478 0.00 0.00 46.17 4.11
2881 3983 4.041815 AGACCAAACCTTCTTCTAGGGTTC 59.958 45.833 1.41 0.00 41.41 3.62
2896 3998 7.398289 TCTAGGGTTCCAGCTTAGTATACTA 57.602 40.000 8.59 8.59 0.00 1.82
2926 4028 2.202756 AAGGATCGGACGCGCTTC 60.203 61.111 5.73 5.32 0.00 3.86
2966 4069 1.745890 GTTTGGTTTGTGGGGGAGC 59.254 57.895 0.00 0.00 0.00 4.70
2968 4071 0.469144 TTTGGTTTGTGGGGGAGCTC 60.469 55.000 4.71 4.71 0.00 4.09
2972 4075 0.967380 GTTTGTGGGGGAGCTCATGG 60.967 60.000 17.19 0.00 0.00 3.66
3022 4125 7.752686 GTGATATTTTGAAGGTCTCTTTTCTGC 59.247 37.037 0.00 0.00 32.52 4.26
3025 4128 0.799393 GAAGGTCTCTTTTCTGCGGC 59.201 55.000 0.00 0.00 32.52 6.53
3061 4164 9.739276 ATATTTTGATGGTCTCTTTCTGTTGTA 57.261 29.630 0.00 0.00 0.00 2.41
3090 4193 2.158986 AGCAAACCGATGAGAGAGATGG 60.159 50.000 0.00 0.00 0.00 3.51
3148 4252 0.042131 ACGAGGGGAGATGTGGGTAA 59.958 55.000 0.00 0.00 0.00 2.85
3210 4315 1.817941 GCATGGTGCGTACGGGATT 60.818 57.895 18.39 0.00 31.71 3.01
3267 4372 1.580059 TGGGGTGAGGGAGATTGTAC 58.420 55.000 0.00 0.00 0.00 2.90
3279 4384 4.142790 GGAGATTGTACGATAGGTGGAGA 58.857 47.826 0.00 0.00 43.77 3.71
3290 4405 4.022762 CGATAGGTGGAGAGACGAAATGAT 60.023 45.833 0.00 0.00 0.00 2.45
3400 4516 7.144722 TCACATGATTCTTAAACGCAGAAAT 57.855 32.000 0.00 0.00 33.94 2.17
3444 4560 4.982295 TGACACTTCATCTTCAACACTACG 59.018 41.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.546499 TGTCCCAAACCTATAGTCAAACTCT 59.454 40.000 0.00 0.00 0.00 3.24
4 5 5.801380 TGTCCCAAACCTATAGTCAAACTC 58.199 41.667 0.00 0.00 0.00 3.01
6 7 7.773690 ACATATGTCCCAAACCTATAGTCAAAC 59.226 37.037 1.41 0.00 0.00 2.93
9 10 6.183361 CCACATATGTCCCAAACCTATAGTCA 60.183 42.308 5.07 0.00 0.00 3.41
10 11 6.042781 TCCACATATGTCCCAAACCTATAGTC 59.957 42.308 5.07 0.00 0.00 2.59
11 12 5.908831 TCCACATATGTCCCAAACCTATAGT 59.091 40.000 5.07 0.00 0.00 2.12
12 13 6.433847 TCCACATATGTCCCAAACCTATAG 57.566 41.667 5.07 0.00 0.00 1.31
14 15 5.725551 TTCCACATATGTCCCAAACCTAT 57.274 39.130 5.07 0.00 0.00 2.57
15 16 5.522315 TTTCCACATATGTCCCAAACCTA 57.478 39.130 5.07 0.00 0.00 3.08
16 17 4.396357 TTTCCACATATGTCCCAAACCT 57.604 40.909 5.07 0.00 0.00 3.50
17 18 4.709397 TCATTTCCACATATGTCCCAAACC 59.291 41.667 5.07 0.00 0.00 3.27
18 19 5.652014 TCTCATTTCCACATATGTCCCAAAC 59.348 40.000 5.07 0.00 0.00 2.93
19 20 5.825532 TCTCATTTCCACATATGTCCCAAA 58.174 37.500 5.07 5.69 0.00 3.28
20 21 5.449297 TCTCATTTCCACATATGTCCCAA 57.551 39.130 5.07 0.00 0.00 4.12
21 22 5.449297 TTCTCATTTCCACATATGTCCCA 57.551 39.130 5.07 0.00 0.00 4.37
22 23 5.888161 ACTTTCTCATTTCCACATATGTCCC 59.112 40.000 5.07 0.00 0.00 4.46
23 24 6.183360 CCACTTTCTCATTTCCACATATGTCC 60.183 42.308 5.07 0.00 0.00 4.02
24 25 6.375455 ACCACTTTCTCATTTCCACATATGTC 59.625 38.462 5.07 0.00 0.00 3.06
25 26 6.248433 ACCACTTTCTCATTTCCACATATGT 58.752 36.000 1.41 1.41 0.00 2.29
26 27 6.764308 ACCACTTTCTCATTTCCACATATG 57.236 37.500 0.00 0.00 0.00 1.78
27 28 6.947733 TCAACCACTTTCTCATTTCCACATAT 59.052 34.615 0.00 0.00 0.00 1.78
28 29 6.303054 TCAACCACTTTCTCATTTCCACATA 58.697 36.000 0.00 0.00 0.00 2.29
29 30 5.139727 TCAACCACTTTCTCATTTCCACAT 58.860 37.500 0.00 0.00 0.00 3.21
30 31 4.531854 TCAACCACTTTCTCATTTCCACA 58.468 39.130 0.00 0.00 0.00 4.17
31 32 4.022849 CCTCAACCACTTTCTCATTTCCAC 60.023 45.833 0.00 0.00 0.00 4.02
32 33 4.144297 CCTCAACCACTTTCTCATTTCCA 58.856 43.478 0.00 0.00 0.00 3.53
33 34 3.507622 CCCTCAACCACTTTCTCATTTCC 59.492 47.826 0.00 0.00 0.00 3.13
34 35 3.057245 GCCCTCAACCACTTTCTCATTTC 60.057 47.826 0.00 0.00 0.00 2.17
35 36 2.893489 GCCCTCAACCACTTTCTCATTT 59.107 45.455 0.00 0.00 0.00 2.32
36 37 2.108952 AGCCCTCAACCACTTTCTCATT 59.891 45.455 0.00 0.00 0.00 2.57
37 38 1.707427 AGCCCTCAACCACTTTCTCAT 59.293 47.619 0.00 0.00 0.00 2.90
38 39 1.140312 AGCCCTCAACCACTTTCTCA 58.860 50.000 0.00 0.00 0.00 3.27
39 40 1.528129 CAGCCCTCAACCACTTTCTC 58.472 55.000 0.00 0.00 0.00 2.87
40 41 0.111253 CCAGCCCTCAACCACTTTCT 59.889 55.000 0.00 0.00 0.00 2.52
41 42 0.110486 TCCAGCCCTCAACCACTTTC 59.890 55.000 0.00 0.00 0.00 2.62
42 43 0.111253 CTCCAGCCCTCAACCACTTT 59.889 55.000 0.00 0.00 0.00 2.66
43 44 1.763770 CTCCAGCCCTCAACCACTT 59.236 57.895 0.00 0.00 0.00 3.16
44 45 2.900106 GCTCCAGCCCTCAACCACT 61.900 63.158 0.00 0.00 34.31 4.00
45 46 2.360475 GCTCCAGCCCTCAACCAC 60.360 66.667 0.00 0.00 34.31 4.16
46 47 0.913934 TATGCTCCAGCCCTCAACCA 60.914 55.000 0.00 0.00 41.18 3.67
47 48 0.475906 ATATGCTCCAGCCCTCAACC 59.524 55.000 0.00 0.00 41.18 3.77
48 49 1.141657 TGATATGCTCCAGCCCTCAAC 59.858 52.381 0.00 0.00 41.18 3.18
49 50 1.141657 GTGATATGCTCCAGCCCTCAA 59.858 52.381 0.00 0.00 41.18 3.02
50 51 0.761187 GTGATATGCTCCAGCCCTCA 59.239 55.000 0.00 0.00 41.18 3.86
51 52 1.055040 AGTGATATGCTCCAGCCCTC 58.945 55.000 0.00 0.00 41.18 4.30
52 53 2.405618 TAGTGATATGCTCCAGCCCT 57.594 50.000 0.00 0.00 41.18 5.19
53 54 2.873649 GCTTAGTGATATGCTCCAGCCC 60.874 54.545 0.00 0.00 41.18 5.19
54 55 2.224378 TGCTTAGTGATATGCTCCAGCC 60.224 50.000 0.00 0.00 41.18 4.85
55 56 2.805099 GTGCTTAGTGATATGCTCCAGC 59.195 50.000 0.00 0.00 42.50 4.85
56 57 4.333913 AGTGCTTAGTGATATGCTCCAG 57.666 45.455 0.00 0.00 0.00 3.86
57 58 4.760530 AAGTGCTTAGTGATATGCTCCA 57.239 40.909 0.00 0.00 0.00 3.86
58 59 5.118990 TCAAAGTGCTTAGTGATATGCTCC 58.881 41.667 0.00 0.00 0.00 4.70
59 60 5.277250 GCTCAAAGTGCTTAGTGATATGCTC 60.277 44.000 0.00 0.00 0.00 4.26
60 61 4.574013 GCTCAAAGTGCTTAGTGATATGCT 59.426 41.667 0.00 0.00 0.00 3.79
61 62 4.333649 TGCTCAAAGTGCTTAGTGATATGC 59.666 41.667 0.00 0.00 0.00 3.14
62 63 6.426980 TTGCTCAAAGTGCTTAGTGATATG 57.573 37.500 0.00 0.00 0.00 1.78
63 64 5.065731 GCTTGCTCAAAGTGCTTAGTGATAT 59.934 40.000 0.00 0.00 38.25 1.63
64 65 4.393062 GCTTGCTCAAAGTGCTTAGTGATA 59.607 41.667 0.00 0.00 38.25 2.15
65 66 3.190118 GCTTGCTCAAAGTGCTTAGTGAT 59.810 43.478 0.00 0.00 38.25 3.06
66 67 2.549754 GCTTGCTCAAAGTGCTTAGTGA 59.450 45.455 0.00 0.00 38.25 3.41
67 68 2.291465 TGCTTGCTCAAAGTGCTTAGTG 59.709 45.455 0.00 0.00 38.25 2.74
68 69 2.575532 TGCTTGCTCAAAGTGCTTAGT 58.424 42.857 0.00 0.00 38.25 2.24
69 70 3.562505 CTTGCTTGCTCAAAGTGCTTAG 58.437 45.455 0.00 0.00 38.25 2.18
70 71 2.287788 GCTTGCTTGCTCAAAGTGCTTA 60.288 45.455 0.00 0.00 38.25 3.09
71 72 1.537562 GCTTGCTTGCTCAAAGTGCTT 60.538 47.619 0.00 0.00 38.25 3.91
72 73 0.031721 GCTTGCTTGCTCAAAGTGCT 59.968 50.000 0.00 0.00 38.25 4.40
73 74 0.942884 GGCTTGCTTGCTCAAAGTGC 60.943 55.000 1.96 0.00 38.25 4.40
74 75 0.386476 TGGCTTGCTTGCTCAAAGTG 59.614 50.000 1.96 0.00 38.25 3.16
75 76 1.335145 ATGGCTTGCTTGCTCAAAGT 58.665 45.000 1.96 0.00 38.25 2.66
76 77 2.450609 AATGGCTTGCTTGCTCAAAG 57.549 45.000 1.96 0.00 39.07 2.77
77 78 3.861886 GCTTAATGGCTTGCTTGCTCAAA 60.862 43.478 1.96 0.00 0.00 2.69
78 79 2.353011 GCTTAATGGCTTGCTTGCTCAA 60.353 45.455 1.96 0.00 0.00 3.02
79 80 1.203052 GCTTAATGGCTTGCTTGCTCA 59.797 47.619 1.96 0.00 0.00 4.26
80 81 1.203052 TGCTTAATGGCTTGCTTGCTC 59.797 47.619 1.96 0.00 0.00 4.26
81 82 1.259609 TGCTTAATGGCTTGCTTGCT 58.740 45.000 1.96 0.00 0.00 3.91
82 83 1.728425 GTTGCTTAATGGCTTGCTTGC 59.272 47.619 0.00 0.00 0.00 4.01
83 84 2.733026 GTGTTGCTTAATGGCTTGCTTG 59.267 45.455 0.00 0.00 0.00 4.01
84 85 2.289010 GGTGTTGCTTAATGGCTTGCTT 60.289 45.455 0.00 0.00 0.00 3.91
85 86 1.273327 GGTGTTGCTTAATGGCTTGCT 59.727 47.619 0.00 0.00 0.00 3.91
86 87 1.273327 AGGTGTTGCTTAATGGCTTGC 59.727 47.619 0.00 0.00 0.00 4.01
87 88 2.557924 TGAGGTGTTGCTTAATGGCTTG 59.442 45.455 0.00 0.00 0.00 4.01
88 89 2.875296 TGAGGTGTTGCTTAATGGCTT 58.125 42.857 0.00 0.00 0.00 4.35
89 90 2.584835 TGAGGTGTTGCTTAATGGCT 57.415 45.000 0.00 0.00 0.00 4.75
90 91 2.099756 GGATGAGGTGTTGCTTAATGGC 59.900 50.000 0.00 0.00 0.00 4.40
91 92 2.689983 GGGATGAGGTGTTGCTTAATGG 59.310 50.000 0.00 0.00 0.00 3.16
92 93 2.689983 GGGGATGAGGTGTTGCTTAATG 59.310 50.000 0.00 0.00 0.00 1.90
93 94 2.582636 AGGGGATGAGGTGTTGCTTAAT 59.417 45.455 0.00 0.00 0.00 1.40
94 95 1.992557 AGGGGATGAGGTGTTGCTTAA 59.007 47.619 0.00 0.00 0.00 1.85
95 96 1.668826 AGGGGATGAGGTGTTGCTTA 58.331 50.000 0.00 0.00 0.00 3.09
96 97 0.779997 AAGGGGATGAGGTGTTGCTT 59.220 50.000 0.00 0.00 0.00 3.91
97 98 0.779997 AAAGGGGATGAGGTGTTGCT 59.220 50.000 0.00 0.00 0.00 3.91
98 99 1.632589 AAAAGGGGATGAGGTGTTGC 58.367 50.000 0.00 0.00 0.00 4.17
99 100 6.187682 ACTATTAAAAGGGGATGAGGTGTTG 58.812 40.000 0.00 0.00 0.00 3.33
100 101 6.402981 ACTATTAAAAGGGGATGAGGTGTT 57.597 37.500 0.00 0.00 0.00 3.32
101 102 7.707467 ATACTATTAAAAGGGGATGAGGTGT 57.293 36.000 0.00 0.00 0.00 4.16
102 103 7.448469 CCAATACTATTAAAAGGGGATGAGGTG 59.552 40.741 0.00 0.00 0.00 4.00
103 104 7.526918 CCAATACTATTAAAAGGGGATGAGGT 58.473 38.462 0.00 0.00 0.00 3.85
104 105 6.434340 GCCAATACTATTAAAAGGGGATGAGG 59.566 42.308 0.00 0.00 0.00 3.86
105 106 7.234355 AGCCAATACTATTAAAAGGGGATGAG 58.766 38.462 0.00 0.00 0.00 2.90
106 107 7.161715 AGCCAATACTATTAAAAGGGGATGA 57.838 36.000 0.00 0.00 0.00 2.92
107 108 7.839680 AAGCCAATACTATTAAAAGGGGATG 57.160 36.000 0.00 0.00 0.00 3.51
108 109 8.854237 AAAAGCCAATACTATTAAAAGGGGAT 57.146 30.769 0.00 0.00 0.00 3.85
109 110 8.673456 AAAAAGCCAATACTATTAAAAGGGGA 57.327 30.769 0.00 0.00 0.00 4.81
110 111 8.758829 AGAAAAAGCCAATACTATTAAAAGGGG 58.241 33.333 0.00 0.00 0.00 4.79
118 119 9.343539 GAGTCCATAGAAAAAGCCAATACTATT 57.656 33.333 0.00 0.00 0.00 1.73
119 120 8.494433 TGAGTCCATAGAAAAAGCCAATACTAT 58.506 33.333 0.00 0.00 0.00 2.12
120 121 7.857456 TGAGTCCATAGAAAAAGCCAATACTA 58.143 34.615 0.00 0.00 0.00 1.82
121 122 6.721318 TGAGTCCATAGAAAAAGCCAATACT 58.279 36.000 0.00 0.00 0.00 2.12
122 123 7.391148 TTGAGTCCATAGAAAAAGCCAATAC 57.609 36.000 0.00 0.00 0.00 1.89
123 124 7.615365 ACATTGAGTCCATAGAAAAAGCCAATA 59.385 33.333 0.00 0.00 0.00 1.90
124 125 6.438425 ACATTGAGTCCATAGAAAAAGCCAAT 59.562 34.615 0.00 0.00 0.00 3.16
125 126 5.774690 ACATTGAGTCCATAGAAAAAGCCAA 59.225 36.000 0.00 0.00 0.00 4.52
126 127 5.183713 CACATTGAGTCCATAGAAAAAGCCA 59.816 40.000 0.00 0.00 0.00 4.75
127 128 5.415701 TCACATTGAGTCCATAGAAAAAGCC 59.584 40.000 0.00 0.00 0.00 4.35
128 129 6.500684 TCACATTGAGTCCATAGAAAAAGC 57.499 37.500 0.00 0.00 0.00 3.51
129 130 8.503458 AGATCACATTGAGTCCATAGAAAAAG 57.497 34.615 0.00 0.00 0.00 2.27
130 131 8.733458 CAAGATCACATTGAGTCCATAGAAAAA 58.267 33.333 0.00 0.00 0.00 1.94
131 132 7.337689 CCAAGATCACATTGAGTCCATAGAAAA 59.662 37.037 0.00 0.00 0.00 2.29
132 133 6.825213 CCAAGATCACATTGAGTCCATAGAAA 59.175 38.462 0.00 0.00 0.00 2.52
133 134 6.156775 TCCAAGATCACATTGAGTCCATAGAA 59.843 38.462 0.00 0.00 0.00 2.10
134 135 5.662657 TCCAAGATCACATTGAGTCCATAGA 59.337 40.000 0.00 0.00 0.00 1.98
135 136 5.922053 TCCAAGATCACATTGAGTCCATAG 58.078 41.667 0.00 0.00 0.00 2.23
136 137 5.955961 TCCAAGATCACATTGAGTCCATA 57.044 39.130 0.00 0.00 0.00 2.74
137 138 4.849813 TCCAAGATCACATTGAGTCCAT 57.150 40.909 0.00 0.00 0.00 3.41
138 139 4.225717 TGATCCAAGATCACATTGAGTCCA 59.774 41.667 3.17 0.00 0.00 4.02
139 140 4.574013 GTGATCCAAGATCACATTGAGTCC 59.426 45.833 25.48 2.58 45.61 3.85
140 141 5.731599 GTGATCCAAGATCACATTGAGTC 57.268 43.478 25.48 3.18 45.61 3.36
167 168 9.635520 CAAAAGCTCAAGATTCTACATTTTCAT 57.364 29.630 0.00 0.00 0.00 2.57
168 169 8.849168 TCAAAAGCTCAAGATTCTACATTTTCA 58.151 29.630 0.00 0.00 0.00 2.69
169 170 9.339492 CTCAAAAGCTCAAGATTCTACATTTTC 57.661 33.333 0.00 0.00 0.00 2.29
170 171 7.811713 GCTCAAAAGCTCAAGATTCTACATTTT 59.188 33.333 0.00 0.00 45.55 1.82
171 172 7.311408 GCTCAAAAGCTCAAGATTCTACATTT 58.689 34.615 0.00 0.00 45.55 2.32
172 173 6.850555 GCTCAAAAGCTCAAGATTCTACATT 58.149 36.000 0.00 0.00 45.55 2.71
173 174 6.434018 GCTCAAAAGCTCAAGATTCTACAT 57.566 37.500 0.00 0.00 45.55 2.29
174 175 5.869753 GCTCAAAAGCTCAAGATTCTACA 57.130 39.130 0.00 0.00 45.55 2.74
188 189 5.176958 CAGAAGATTGGCAAAAGCTCAAAAG 59.823 40.000 3.01 0.00 0.00 2.27
189 190 5.051816 CAGAAGATTGGCAAAAGCTCAAAA 58.948 37.500 3.01 0.00 0.00 2.44
190 191 4.099881 ACAGAAGATTGGCAAAAGCTCAAA 59.900 37.500 3.01 0.00 0.00 2.69
191 192 3.638160 ACAGAAGATTGGCAAAAGCTCAA 59.362 39.130 3.01 0.00 0.00 3.02
192 193 3.225104 ACAGAAGATTGGCAAAAGCTCA 58.775 40.909 3.01 0.00 0.00 4.26
193 194 3.366781 GGACAGAAGATTGGCAAAAGCTC 60.367 47.826 3.01 0.00 0.00 4.09
194 195 2.560105 GGACAGAAGATTGGCAAAAGCT 59.440 45.455 3.01 0.00 0.00 3.74
195 196 2.560105 AGGACAGAAGATTGGCAAAAGC 59.440 45.455 3.01 0.00 0.00 3.51
196 197 4.553323 CAAGGACAGAAGATTGGCAAAAG 58.447 43.478 3.01 0.00 0.00 2.27
197 198 3.321682 CCAAGGACAGAAGATTGGCAAAA 59.678 43.478 3.01 0.00 36.12 2.44
198 199 2.892852 CCAAGGACAGAAGATTGGCAAA 59.107 45.455 3.01 0.00 36.12 3.68
199 200 2.158475 ACCAAGGACAGAAGATTGGCAA 60.158 45.455 0.68 0.68 44.94 4.52
200 201 1.425066 ACCAAGGACAGAAGATTGGCA 59.575 47.619 2.81 0.00 44.94 4.92
201 202 2.206576 ACCAAGGACAGAAGATTGGC 57.793 50.000 2.81 0.00 44.94 4.52
202 203 5.365021 AGATACCAAGGACAGAAGATTGG 57.635 43.478 1.38 1.38 46.20 3.16
203 204 6.409704 TCAAGATACCAAGGACAGAAGATTG 58.590 40.000 0.00 0.00 0.00 2.67
204 205 6.627087 TCAAGATACCAAGGACAGAAGATT 57.373 37.500 0.00 0.00 0.00 2.40
205 206 6.352565 CCTTCAAGATACCAAGGACAGAAGAT 60.353 42.308 0.00 0.00 39.36 2.40
206 207 5.046304 CCTTCAAGATACCAAGGACAGAAGA 60.046 44.000 0.00 0.00 39.36 2.87
207 208 5.181748 CCTTCAAGATACCAAGGACAGAAG 58.818 45.833 0.00 0.00 39.36 2.85
208 209 4.019321 CCCTTCAAGATACCAAGGACAGAA 60.019 45.833 0.00 0.00 39.36 3.02
209 210 3.519510 CCCTTCAAGATACCAAGGACAGA 59.480 47.826 0.00 0.00 39.36 3.41
210 211 3.370953 CCCCTTCAAGATACCAAGGACAG 60.371 52.174 0.00 0.00 39.36 3.51
211 212 2.576191 CCCCTTCAAGATACCAAGGACA 59.424 50.000 0.00 0.00 39.36 4.02
212 213 2.576648 ACCCCTTCAAGATACCAAGGAC 59.423 50.000 0.00 0.00 39.36 3.85
213 214 2.929301 ACCCCTTCAAGATACCAAGGA 58.071 47.619 0.00 0.00 39.36 3.36
214 215 3.621558 GAACCCCTTCAAGATACCAAGG 58.378 50.000 0.00 0.00 37.09 3.61
215 216 3.010138 TGGAACCCCTTCAAGATACCAAG 59.990 47.826 0.00 0.00 0.00 3.61
216 217 2.990284 TGGAACCCCTTCAAGATACCAA 59.010 45.455 0.00 0.00 0.00 3.67
217 218 2.307686 GTGGAACCCCTTCAAGATACCA 59.692 50.000 0.00 0.00 0.00 3.25
218 219 2.307686 TGTGGAACCCCTTCAAGATACC 59.692 50.000 0.00 0.00 34.36 2.73
219 220 3.713826 TGTGGAACCCCTTCAAGATAC 57.286 47.619 0.00 0.00 34.36 2.24
220 221 3.202151 GGATGTGGAACCCCTTCAAGATA 59.798 47.826 0.00 0.00 34.36 1.98
221 222 2.024941 GGATGTGGAACCCCTTCAAGAT 60.025 50.000 0.00 0.00 34.36 2.40
222 223 1.354368 GGATGTGGAACCCCTTCAAGA 59.646 52.381 0.00 0.00 34.36 3.02
223 224 1.355720 AGGATGTGGAACCCCTTCAAG 59.644 52.381 0.00 0.00 35.72 3.02
224 225 1.354368 GAGGATGTGGAACCCCTTCAA 59.646 52.381 0.00 0.00 38.71 2.69
225 226 0.991920 GAGGATGTGGAACCCCTTCA 59.008 55.000 0.00 0.00 38.71 3.02
226 227 1.290134 AGAGGATGTGGAACCCCTTC 58.710 55.000 0.00 0.00 38.71 3.46
227 228 1.355720 CAAGAGGATGTGGAACCCCTT 59.644 52.381 0.00 0.00 38.71 3.95
228 229 0.995024 CAAGAGGATGTGGAACCCCT 59.005 55.000 0.00 0.00 40.84 4.79
229 230 0.698818 ACAAGAGGATGTGGAACCCC 59.301 55.000 0.00 0.00 34.36 4.95
230 231 1.340114 GGACAAGAGGATGTGGAACCC 60.340 57.143 0.00 0.00 34.36 4.11
231 232 1.351017 TGGACAAGAGGATGTGGAACC 59.649 52.381 0.00 0.00 34.36 3.62
232 233 2.859165 TGGACAAGAGGATGTGGAAC 57.141 50.000 0.00 0.00 32.57 3.62
233 234 2.618816 GCATGGACAAGAGGATGTGGAA 60.619 50.000 0.00 0.00 32.57 3.53
234 235 1.065199 GCATGGACAAGAGGATGTGGA 60.065 52.381 0.00 0.00 32.57 4.02
235 236 1.386533 GCATGGACAAGAGGATGTGG 58.613 55.000 0.00 0.00 32.57 4.17
236 237 1.340308 TGGCATGGACAAGAGGATGTG 60.340 52.381 0.00 0.00 32.57 3.21
237 238 0.994247 TGGCATGGACAAGAGGATGT 59.006 50.000 0.00 0.00 35.90 3.06
238 239 1.064906 AGTGGCATGGACAAGAGGATG 60.065 52.381 0.00 0.00 0.00 3.51
239 240 1.211457 GAGTGGCATGGACAAGAGGAT 59.789 52.381 0.00 0.00 0.00 3.24
240 241 0.615331 GAGTGGCATGGACAAGAGGA 59.385 55.000 0.00 0.00 0.00 3.71
241 242 0.393537 GGAGTGGCATGGACAAGAGG 60.394 60.000 0.00 0.00 0.00 3.69
242 243 0.325933 TGGAGTGGCATGGACAAGAG 59.674 55.000 0.00 0.00 0.00 2.85
243 244 0.036732 GTGGAGTGGCATGGACAAGA 59.963 55.000 0.00 0.00 0.00 3.02
244 245 0.037303 AGTGGAGTGGCATGGACAAG 59.963 55.000 0.00 0.00 0.00 3.16
245 246 0.250858 CAGTGGAGTGGCATGGACAA 60.251 55.000 0.00 0.00 0.00 3.18
246 247 1.376086 CAGTGGAGTGGCATGGACA 59.624 57.895 0.00 0.00 0.00 4.02
247 248 0.250901 AACAGTGGAGTGGCATGGAC 60.251 55.000 0.00 0.00 0.00 4.02
248 249 0.250858 CAACAGTGGAGTGGCATGGA 60.251 55.000 0.00 0.00 0.00 3.41
249 250 0.250858 TCAACAGTGGAGTGGCATGG 60.251 55.000 0.00 0.00 0.00 3.66
250 251 1.267806 GTTCAACAGTGGAGTGGCATG 59.732 52.381 0.00 0.00 0.00 4.06
251 252 1.143684 AGTTCAACAGTGGAGTGGCAT 59.856 47.619 0.00 0.00 0.00 4.40
252 253 0.546122 AGTTCAACAGTGGAGTGGCA 59.454 50.000 0.00 0.00 0.00 4.92
253 254 1.230324 GAGTTCAACAGTGGAGTGGC 58.770 55.000 0.00 0.00 0.00 5.01
254 255 2.620251 TGAGTTCAACAGTGGAGTGG 57.380 50.000 0.00 0.00 0.00 4.00
255 256 3.744942 CAGATGAGTTCAACAGTGGAGTG 59.255 47.826 0.00 0.00 0.00 3.51
256 257 3.643320 TCAGATGAGTTCAACAGTGGAGT 59.357 43.478 0.00 0.00 0.00 3.85
257 258 4.263018 TCAGATGAGTTCAACAGTGGAG 57.737 45.455 0.00 0.00 0.00 3.86
258 259 4.687901 TTCAGATGAGTTCAACAGTGGA 57.312 40.909 0.00 0.00 0.00 4.02
259 260 5.954296 ATTTCAGATGAGTTCAACAGTGG 57.046 39.130 0.00 0.00 0.00 4.00
260 261 9.376075 AGTATATTTCAGATGAGTTCAACAGTG 57.624 33.333 0.00 0.00 0.00 3.66
284 285 9.877178 CTTGTTGGACTAATAGTTTCATCTAGT 57.123 33.333 0.00 0.00 0.00 2.57
287 288 8.816894 TCTCTTGTTGGACTAATAGTTTCATCT 58.183 33.333 0.00 0.00 0.00 2.90
288 289 9.606631 ATCTCTTGTTGGACTAATAGTTTCATC 57.393 33.333 0.00 0.00 0.00 2.92
294 295 9.823647 CAACATATCTCTTGTTGGACTAATAGT 57.176 33.333 8.33 0.00 46.46 2.12
315 316 9.651913 GGTGATTTTGGTAATTAATGTCAACAT 57.348 29.630 0.00 0.00 38.41 2.71
316 317 8.091449 GGGTGATTTTGGTAATTAATGTCAACA 58.909 33.333 0.00 0.00 0.00 3.33
317 318 8.091449 TGGGTGATTTTGGTAATTAATGTCAAC 58.909 33.333 0.00 0.00 0.00 3.18
318 319 8.195165 TGGGTGATTTTGGTAATTAATGTCAA 57.805 30.769 0.00 0.00 0.00 3.18
319 320 7.093552 CCTGGGTGATTTTGGTAATTAATGTCA 60.094 37.037 0.00 0.00 0.00 3.58
320 321 7.264947 CCTGGGTGATTTTGGTAATTAATGTC 58.735 38.462 0.00 0.00 0.00 3.06
321 322 6.156083 CCCTGGGTGATTTTGGTAATTAATGT 59.844 38.462 3.97 0.00 0.00 2.71
322 323 6.382570 TCCCTGGGTGATTTTGGTAATTAATG 59.617 38.462 13.56 0.00 0.00 1.90
323 324 6.507568 TCCCTGGGTGATTTTGGTAATTAAT 58.492 36.000 13.56 0.00 0.00 1.40
324 325 5.905088 TCCCTGGGTGATTTTGGTAATTAA 58.095 37.500 13.56 0.00 0.00 1.40
325 326 5.515106 CTCCCTGGGTGATTTTGGTAATTA 58.485 41.667 13.56 0.00 0.00 1.40
326 327 4.352893 CTCCCTGGGTGATTTTGGTAATT 58.647 43.478 13.56 0.00 0.00 1.40
327 328 3.881713 GCTCCCTGGGTGATTTTGGTAAT 60.882 47.826 18.68 0.00 0.00 1.89
328 329 2.556559 GCTCCCTGGGTGATTTTGGTAA 60.557 50.000 18.68 0.00 0.00 2.85
329 330 1.005450 GCTCCCTGGGTGATTTTGGTA 59.995 52.381 18.68 0.00 0.00 3.25
330 331 0.251787 GCTCCCTGGGTGATTTTGGT 60.252 55.000 18.68 0.00 0.00 3.67
331 332 0.251742 TGCTCCCTGGGTGATTTTGG 60.252 55.000 18.68 0.00 0.00 3.28
332 333 0.890683 GTGCTCCCTGGGTGATTTTG 59.109 55.000 18.68 0.65 0.00 2.44
333 334 0.779997 AGTGCTCCCTGGGTGATTTT 59.220 50.000 18.68 0.00 0.00 1.82
334 335 0.779997 AAGTGCTCCCTGGGTGATTT 59.220 50.000 18.68 6.10 0.00 2.17
335 336 0.038744 CAAGTGCTCCCTGGGTGATT 59.961 55.000 18.68 6.73 0.00 2.57
336 337 1.136329 ACAAGTGCTCCCTGGGTGAT 61.136 55.000 18.68 0.69 0.00 3.06
337 338 1.770110 ACAAGTGCTCCCTGGGTGA 60.770 57.895 18.68 0.00 0.00 4.02
338 339 1.601759 CACAAGTGCTCCCTGGGTG 60.602 63.158 13.56 11.90 0.00 4.61
339 340 2.839098 CACAAGTGCTCCCTGGGT 59.161 61.111 13.56 0.00 0.00 4.51
357 358 4.035675 AGTGACCGAAGAAAAGCTTGAAAG 59.964 41.667 0.00 0.00 36.83 2.62
358 359 3.945285 AGTGACCGAAGAAAAGCTTGAAA 59.055 39.130 0.00 0.00 36.83 2.69
359 360 3.541632 AGTGACCGAAGAAAAGCTTGAA 58.458 40.909 0.00 0.00 36.83 2.69
360 361 3.131396 GAGTGACCGAAGAAAAGCTTGA 58.869 45.455 0.00 0.00 36.83 3.02
361 362 3.134458 AGAGTGACCGAAGAAAAGCTTG 58.866 45.455 0.00 0.00 36.83 4.01
372 373 0.323178 GTGGTAGGGAGAGTGACCGA 60.323 60.000 0.00 0.00 34.49 4.69
374 375 1.187087 CAGTGGTAGGGAGAGTGACC 58.813 60.000 0.00 0.00 0.00 4.02
378 379 0.905337 GTGCCAGTGGTAGGGAGAGT 60.905 60.000 11.74 0.00 0.00 3.24
435 436 1.063642 GGAAGAAAGAAGGGGATGGGG 60.064 57.143 0.00 0.00 0.00 4.96
471 472 7.397192 TCAAATCCATATATCGAGACCTCATCA 59.603 37.037 0.00 0.00 0.00 3.07
477 478 5.112686 GCCTCAAATCCATATATCGAGACC 58.887 45.833 0.00 0.00 0.00 3.85
486 488 3.322828 GCCATGTTGCCTCAAATCCATAT 59.677 43.478 0.00 0.00 0.00 1.78
508 510 1.269517 GCTCTGCTAAGGATGAGGTCG 60.270 57.143 0.00 0.00 0.00 4.79
543 545 0.535797 GACGACGAAAGGAGGGGATT 59.464 55.000 0.00 0.00 0.00 3.01
551 553 0.865769 CAAAGGTGGACGACGAAAGG 59.134 55.000 0.00 0.00 0.00 3.11
569 571 7.711772 TCGACTTTAAAGGTCAAATTCACTACA 59.288 33.333 19.14 0.00 33.73 2.74
570 572 8.080083 TCGACTTTAAAGGTCAAATTCACTAC 57.920 34.615 19.14 0.00 33.73 2.73
599 601 5.189659 AGATTCAATGTAGAGTAGACCGC 57.810 43.478 0.00 0.00 0.00 5.68
675 678 8.190784 GCATGTAGCTAATGGACAATAAACTTT 58.809 33.333 14.00 0.00 41.15 2.66
711 714 9.793259 GGATATGAAGATTGGGATACACTAAAA 57.207 33.333 0.00 0.00 39.74 1.52
714 717 6.951778 TCGGATATGAAGATTGGGATACACTA 59.048 38.462 0.00 0.00 39.74 2.74
745 748 1.630369 AGAGTTGAGCTGGCATTGGTA 59.370 47.619 0.00 0.00 0.00 3.25
751 754 0.243907 GTCGTAGAGTTGAGCTGGCA 59.756 55.000 0.00 0.00 36.95 4.92
771 774 2.125673 ACATGTCGCTACCCACGC 60.126 61.111 0.00 0.00 0.00 5.34
785 788 3.776969 ACACATGGTAGACAGATGGACAT 59.223 43.478 0.00 0.00 0.00 3.06
921 925 4.336280 GAAGGACCAAGAAAAGCACCTAT 58.664 43.478 0.00 0.00 0.00 2.57
922 926 3.751518 GAAGGACCAAGAAAAGCACCTA 58.248 45.455 0.00 0.00 0.00 3.08
923 927 2.587522 GAAGGACCAAGAAAAGCACCT 58.412 47.619 0.00 0.00 0.00 4.00
924 928 1.266989 CGAAGGACCAAGAAAAGCACC 59.733 52.381 0.00 0.00 0.00 5.01
925 929 2.688364 CGAAGGACCAAGAAAAGCAC 57.312 50.000 0.00 0.00 0.00 4.40
947 951 7.404671 TTCTCATTTTTAATGTAAGAGGGGC 57.595 36.000 0.00 0.00 0.00 5.80
968 972 6.067217 ACTATGCCTGTATCCTTGTTTTCT 57.933 37.500 0.00 0.00 0.00 2.52
981 986 4.935352 TGCTTTCAAAAACTATGCCTGT 57.065 36.364 0.00 0.00 0.00 4.00
983 988 8.416329 CCTTATATGCTTTCAAAAACTATGCCT 58.584 33.333 0.00 0.00 0.00 4.75
1034 1039 0.179000 CAGGATGACTACTGTGGGCC 59.821 60.000 0.00 0.00 39.69 5.80
1068 1073 6.369629 TCTTAGATCTAGAAGTTGGGAGGAG 58.630 44.000 2.02 0.00 0.00 3.69
1081 1086 4.380444 GGAGGCTCGCAATCTTAGATCTAG 60.380 50.000 8.69 0.00 0.00 2.43
1097 1102 2.029918 GTGGTGAAAATGTTGGAGGCTC 60.030 50.000 5.78 5.78 0.00 4.70
1112 1117 2.901281 CGGGTTCCCATGGTGGTGA 61.901 63.158 11.73 0.00 35.17 4.02
1194 1199 3.088532 GGCCATGTAACAATCAAGGTCA 58.911 45.455 0.00 0.00 30.11 4.02
1330 1335 2.271800 GTTCACTAGAAGGCGGATGTG 58.728 52.381 0.00 0.00 33.63 3.21
1333 1338 1.207329 GGTGTTCACTAGAAGGCGGAT 59.793 52.381 0.00 0.00 33.63 4.18
1386 1391 6.831353 AGATGATGTAGTACTTGCAGAGTAGT 59.169 38.462 0.00 15.84 44.70 2.73
1393 1398 5.363580 TGATGGAGATGATGTAGTACTTGCA 59.636 40.000 0.00 1.04 0.00 4.08
1607 1612 1.741770 CTCACACTGTTAGGGCCGC 60.742 63.158 0.00 0.00 0.00 6.53
1615 1620 2.105477 ACCTGATGAAGCTCACACTGTT 59.895 45.455 0.00 0.00 0.00 3.16
1622 1627 5.939764 AGTTATGTACCTGATGAAGCTCA 57.060 39.130 0.00 0.00 0.00 4.26
1714 1719 2.202236 ATCGCAGGAAGTGGTGGCAT 62.202 55.000 0.00 0.00 0.00 4.40
1863 1880 1.971149 AGACCTCCACATGATTCCCA 58.029 50.000 0.00 0.00 0.00 4.37
1871 1888 3.184628 TCCATCTTGAAGACCTCCACAT 58.815 45.455 0.00 0.00 0.00 3.21
2232 2266 9.823647 CTATCTTGATACTTTAACACCTGTGAT 57.176 33.333 3.94 0.00 0.00 3.06
2315 2687 2.156504 CGTCGCCATCAGAATATGCTTC 59.843 50.000 0.00 0.00 0.00 3.86
2406 2789 6.367969 GCATCAAGAAAGCATGACAGAAAAAT 59.632 34.615 0.00 0.00 0.00 1.82
2458 2841 7.118723 TGCATTGATAAAACTATCAAGACCCT 58.881 34.615 11.89 0.00 45.98 4.34
2508 2891 9.123709 CACTAGAACGAATCTCTATGATAAAGC 57.876 37.037 0.00 0.00 39.71 3.51
2520 2903 3.997021 CACCAAAGCACTAGAACGAATCT 59.003 43.478 0.00 0.00 42.48 2.40
2531 2914 0.474184 ACTAGCACCACCAAAGCACT 59.526 50.000 0.00 0.00 0.00 4.40
2602 2985 9.983804 GTTACCACTTCATGTAACTAATTTAGC 57.016 33.333 3.28 0.00 42.13 3.09
2637 3020 5.571357 CGTAGGCGCACATAAAAAGAAAAAT 59.429 36.000 10.83 0.00 0.00 1.82
2782 3166 8.258007 ACTTGAATCGTATTATTGGACAGAGAA 58.742 33.333 0.00 0.00 0.00 2.87
2795 3894 5.410439 AGCCGTTAAACACTTGAATCGTATT 59.590 36.000 0.00 0.00 0.00 1.89
2818 3917 4.317488 AGGCAACCAATTAATTGTGCAAG 58.683 39.130 29.80 17.60 39.87 4.01
2850 3949 6.296803 AGAAGAAGGTTTGGTCTTAATTCGT 58.703 36.000 0.00 0.00 34.23 3.85
2874 3976 9.443365 AATTTAGTATACTAAGCTGGAACCCTA 57.557 33.333 21.45 6.58 39.36 3.53
2880 3982 9.144298 AGTGCTAATTTAGTATACTAAGCTGGA 57.856 33.333 24.52 13.35 39.36 3.86
2896 3998 5.602628 GTCCGATCCTTCTAGTGCTAATTT 58.397 41.667 0.00 0.00 0.00 1.82
2926 4028 5.339990 ACCAATTCTTTTATGAAATCCGCG 58.660 37.500 0.00 0.00 0.00 6.46
2942 4045 2.486370 CCCCCACAAACCAAACCAATTC 60.486 50.000 0.00 0.00 0.00 2.17
3016 4119 9.891828 CAAAATATAACATTATAGCCGCAGAAA 57.108 29.630 0.00 0.00 0.00 2.52
3022 4125 9.988350 GACCATCAAAATATAACATTATAGCCG 57.012 33.333 0.00 0.00 0.00 5.52
3061 4164 0.038892 CATCGGTTTGCTTGCAGCTT 60.039 50.000 9.12 0.00 42.97 3.74
3210 4315 1.308657 ATACCCCACATGCCCCTCA 60.309 57.895 0.00 0.00 0.00 3.86
3243 4348 2.176364 CAATCTCCCTCACCCCATTGAT 59.824 50.000 0.00 0.00 0.00 2.57
3244 4349 1.565759 CAATCTCCCTCACCCCATTGA 59.434 52.381 0.00 0.00 0.00 2.57
3245 4350 1.285962 ACAATCTCCCTCACCCCATTG 59.714 52.381 0.00 0.00 0.00 2.82
3267 4372 3.315470 TCATTTCGTCTCTCCACCTATCG 59.685 47.826 0.00 0.00 0.00 2.92
3279 4384 7.687941 AAGGATTTTGTACATCATTTCGTCT 57.312 32.000 0.00 0.00 0.00 4.18
3400 4516 9.997482 GTGTCACTCTATTTTTACACTTTTTGA 57.003 29.630 0.00 0.00 35.50 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.