Multiple sequence alignment - TraesCS1D01G104700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G104700 chr1D 100.000 2439 0 0 1 2439 96399764 96402202 0.000000e+00 4505
1 TraesCS1D01G104700 chr1D 83.361 1184 108 36 622 1747 22594388 22593236 0.000000e+00 1013
2 TraesCS1D01G104700 chr1D 85.200 250 33 3 622 868 476789506 476789258 1.120000e-63 254
3 TraesCS1D01G104700 chr2B 87.841 1357 125 18 601 1921 692144842 692146194 0.000000e+00 1555
4 TraesCS1D01G104700 chr2B 83.721 903 102 27 603 1475 97424379 97423492 0.000000e+00 811
5 TraesCS1D01G104700 chr7D 84.135 1248 132 27 610 1806 10101954 10100722 0.000000e+00 1147
6 TraesCS1D01G104700 chr7D 85.714 1127 110 28 609 1723 56126847 56125760 0.000000e+00 1142
7 TraesCS1D01G104700 chr7D 84.391 1166 108 33 624 1747 629661700 629660567 0.000000e+00 1077
8 TraesCS1D01G104700 chr7D 86.182 977 96 13 811 1752 629949748 629950720 0.000000e+00 1020
9 TraesCS1D01G104700 chr7D 82.525 1196 108 38 607 1747 69201970 69200821 0.000000e+00 957
10 TraesCS1D01G104700 chr7D 86.007 879 83 15 811 1655 617526698 617527570 0.000000e+00 905
11 TraesCS1D01G104700 chr7D 86.667 120 10 2 1807 1924 56125343 56125228 7.080000e-26 128
12 TraesCS1D01G104700 chr7B 84.193 1183 120 28 775 1920 716374327 716373175 0.000000e+00 1086
13 TraesCS1D01G104700 chr7B 86.860 860 87 14 811 1655 585992528 585993376 0.000000e+00 939
14 TraesCS1D01G104700 chr5D 83.743 1181 123 30 607 1747 124541032 124539881 0.000000e+00 1053
15 TraesCS1D01G104700 chr5D 82.929 1195 114 44 610 1747 435154604 435155765 0.000000e+00 994
16 TraesCS1D01G104700 chr5D 91.968 498 38 2 1924 2420 373154736 373155232 0.000000e+00 697
17 TraesCS1D01G104700 chr5D 86.466 266 31 4 606 868 385985346 385985609 1.100000e-73 287
18 TraesCS1D01G104700 chr4D 87.875 866 78 15 814 1655 455275412 455274550 0.000000e+00 992
19 TraesCS1D01G104700 chr4D 90.440 523 43 2 1924 2439 202833315 202832793 0.000000e+00 682
20 TraesCS1D01G104700 chr3D 82.845 1195 118 38 610 1747 70093970 70095134 0.000000e+00 990
21 TraesCS1D01G104700 chr3D 87.011 870 89 12 807 1655 536922257 536923123 0.000000e+00 959
22 TraesCS1D01G104700 chr3D 92.771 498 35 1 1924 2420 488046957 488047454 0.000000e+00 719
23 TraesCS1D01G104700 chr3D 85.833 600 62 17 610 1201 590028812 590029396 1.240000e-172 616
24 TraesCS1D01G104700 chrUn 86.962 859 87 13 814 1651 111371961 111371107 0.000000e+00 942
25 TraesCS1D01G104700 chr5A 81.971 1187 136 43 609 1747 18434934 18436090 0.000000e+00 935
26 TraesCS1D01G104700 chr5A 83.444 755 87 18 610 1328 48885889 48885137 0.000000e+00 667
27 TraesCS1D01G104700 chr6D 82.849 1067 149 24 608 1655 82906268 82907319 0.000000e+00 926
28 TraesCS1D01G104700 chr6D 92.531 482 35 1 1924 2404 286864022 286864503 0.000000e+00 689
29 TraesCS1D01G104700 chr2D 93.387 499 29 2 1924 2418 422625376 422625874 0.000000e+00 736
30 TraesCS1D01G104700 chr3B 91.767 498 35 2 1924 2420 420402188 420402680 0.000000e+00 688
31 TraesCS1D01G104700 chr6B 91.583 499 39 3 1924 2420 223292976 223293473 0.000000e+00 686
32 TraesCS1D01G104700 chr6B 91.566 498 41 1 1924 2420 513809825 513810322 0.000000e+00 686
33 TraesCS1D01G104700 chr6B 90.154 518 47 3 1924 2439 638857974 638857459 0.000000e+00 671
34 TraesCS1D01G104700 chr4A 84.286 490 54 11 609 1087 626920020 626920497 7.950000e-125 457


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G104700 chr1D 96399764 96402202 2438 False 4505 4505 100.0000 1 2439 1 chr1D.!!$F1 2438
1 TraesCS1D01G104700 chr1D 22593236 22594388 1152 True 1013 1013 83.3610 622 1747 1 chr1D.!!$R1 1125
2 TraesCS1D01G104700 chr2B 692144842 692146194 1352 False 1555 1555 87.8410 601 1921 1 chr2B.!!$F1 1320
3 TraesCS1D01G104700 chr2B 97423492 97424379 887 True 811 811 83.7210 603 1475 1 chr2B.!!$R1 872
4 TraesCS1D01G104700 chr7D 10100722 10101954 1232 True 1147 1147 84.1350 610 1806 1 chr7D.!!$R1 1196
5 TraesCS1D01G104700 chr7D 629660567 629661700 1133 True 1077 1077 84.3910 624 1747 1 chr7D.!!$R3 1123
6 TraesCS1D01G104700 chr7D 629949748 629950720 972 False 1020 1020 86.1820 811 1752 1 chr7D.!!$F2 941
7 TraesCS1D01G104700 chr7D 69200821 69201970 1149 True 957 957 82.5250 607 1747 1 chr7D.!!$R2 1140
8 TraesCS1D01G104700 chr7D 617526698 617527570 872 False 905 905 86.0070 811 1655 1 chr7D.!!$F1 844
9 TraesCS1D01G104700 chr7D 56125228 56126847 1619 True 635 1142 86.1905 609 1924 2 chr7D.!!$R4 1315
10 TraesCS1D01G104700 chr7B 716373175 716374327 1152 True 1086 1086 84.1930 775 1920 1 chr7B.!!$R1 1145
11 TraesCS1D01G104700 chr7B 585992528 585993376 848 False 939 939 86.8600 811 1655 1 chr7B.!!$F1 844
12 TraesCS1D01G104700 chr5D 124539881 124541032 1151 True 1053 1053 83.7430 607 1747 1 chr5D.!!$R1 1140
13 TraesCS1D01G104700 chr5D 435154604 435155765 1161 False 994 994 82.9290 610 1747 1 chr5D.!!$F3 1137
14 TraesCS1D01G104700 chr4D 455274550 455275412 862 True 992 992 87.8750 814 1655 1 chr4D.!!$R2 841
15 TraesCS1D01G104700 chr4D 202832793 202833315 522 True 682 682 90.4400 1924 2439 1 chr4D.!!$R1 515
16 TraesCS1D01G104700 chr3D 70093970 70095134 1164 False 990 990 82.8450 610 1747 1 chr3D.!!$F1 1137
17 TraesCS1D01G104700 chr3D 536922257 536923123 866 False 959 959 87.0110 807 1655 1 chr3D.!!$F3 848
18 TraesCS1D01G104700 chr3D 590028812 590029396 584 False 616 616 85.8330 610 1201 1 chr3D.!!$F4 591
19 TraesCS1D01G104700 chrUn 111371107 111371961 854 True 942 942 86.9620 814 1651 1 chrUn.!!$R1 837
20 TraesCS1D01G104700 chr5A 18434934 18436090 1156 False 935 935 81.9710 609 1747 1 chr5A.!!$F1 1138
21 TraesCS1D01G104700 chr5A 48885137 48885889 752 True 667 667 83.4440 610 1328 1 chr5A.!!$R1 718
22 TraesCS1D01G104700 chr6D 82906268 82907319 1051 False 926 926 82.8490 608 1655 1 chr6D.!!$F1 1047
23 TraesCS1D01G104700 chr6B 638857459 638857974 515 True 671 671 90.1540 1924 2439 1 chr6B.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.107456 AGGGAAGTAGATGCGCATGG 59.893 55.0 30.76 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2403 0.466555 GCCCACGGCCCAATAATGTA 60.467 55.0 0.0 0.0 44.06 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.773117 GCCACCGACGTCGAGGAC 62.773 72.222 36.81 27.47 43.02 3.85
33 34 3.209812 TCGAGGACGAGGGCGATG 61.210 66.667 0.00 0.00 43.81 3.84
34 35 4.933064 CGAGGACGAGGGCGATGC 62.933 72.222 0.00 0.00 42.66 3.91
47 48 3.264897 GATGCCACTGCCGCGTAG 61.265 66.667 4.92 5.64 36.33 3.51
70 71 3.465403 CGAGGGCCTCCTGGTCAG 61.465 72.222 27.36 7.96 45.05 3.51
82 83 1.139853 CCTGGTCAGGGAAGTAGATGC 59.860 57.143 9.08 0.00 44.87 3.91
83 84 0.824109 TGGTCAGGGAAGTAGATGCG 59.176 55.000 0.00 0.00 0.00 4.73
84 85 0.530870 GGTCAGGGAAGTAGATGCGC 60.531 60.000 0.00 0.00 0.00 6.09
85 86 0.175760 GTCAGGGAAGTAGATGCGCA 59.824 55.000 14.96 14.96 0.00 6.09
86 87 1.123077 TCAGGGAAGTAGATGCGCAT 58.877 50.000 25.66 25.66 0.00 4.73
87 88 1.202568 TCAGGGAAGTAGATGCGCATG 60.203 52.381 30.76 11.08 0.00 4.06
88 89 0.107456 AGGGAAGTAGATGCGCATGG 59.893 55.000 30.76 0.00 0.00 3.66
89 90 1.510480 GGGAAGTAGATGCGCATGGC 61.510 60.000 30.76 14.85 43.96 4.40
100 101 2.202650 GCATGGCGTGGATGTTGC 60.203 61.111 9.08 0.00 0.00 4.17
101 102 2.703798 GCATGGCGTGGATGTTGCT 61.704 57.895 9.08 0.00 0.00 3.91
102 103 1.138036 CATGGCGTGGATGTTGCTG 59.862 57.895 0.00 0.00 0.00 4.41
103 104 2.048023 ATGGCGTGGATGTTGCTGG 61.048 57.895 0.00 0.00 0.00 4.85
104 105 2.359850 GGCGTGGATGTTGCTGGA 60.360 61.111 0.00 0.00 0.00 3.86
105 106 2.690778 GGCGTGGATGTTGCTGGAC 61.691 63.158 0.00 0.00 0.00 4.02
106 107 2.690778 GCGTGGATGTTGCTGGACC 61.691 63.158 0.00 0.00 0.00 4.46
107 108 1.003355 CGTGGATGTTGCTGGACCT 60.003 57.895 0.00 0.00 0.00 3.85
108 109 1.300971 CGTGGATGTTGCTGGACCTG 61.301 60.000 0.00 0.00 0.00 4.00
109 110 1.303561 TGGATGTTGCTGGACCTGC 60.304 57.895 16.03 16.03 0.00 4.85
110 111 1.303561 GGATGTTGCTGGACCTGCA 60.304 57.895 21.05 21.05 36.58 4.41
111 112 1.310933 GGATGTTGCTGGACCTGCAG 61.311 60.000 23.20 6.78 39.29 4.41
112 113 0.321919 GATGTTGCTGGACCTGCAGA 60.322 55.000 23.20 15.61 39.29 4.26
113 114 0.322277 ATGTTGCTGGACCTGCAGAG 60.322 55.000 23.20 8.04 39.29 3.35
114 115 2.033141 TTGCTGGACCTGCAGAGC 59.967 61.111 23.20 16.65 39.29 4.09
115 116 3.557903 TTGCTGGACCTGCAGAGCC 62.558 63.158 23.20 16.21 39.29 4.70
153 154 2.202892 GGGAGGTTGTCGCCGATC 60.203 66.667 0.00 0.00 36.06 3.69
154 155 2.577059 GGAGGTTGTCGCCGATCA 59.423 61.111 0.00 0.00 0.00 2.92
155 156 1.810030 GGAGGTTGTCGCCGATCAC 60.810 63.158 0.00 0.00 0.00 3.06
156 157 2.126071 AGGTTGTCGCCGATCACG 60.126 61.111 0.00 0.00 39.43 4.35
157 158 3.849953 GGTTGTCGCCGATCACGC 61.850 66.667 0.00 0.00 38.29 5.34
158 159 3.849953 GTTGTCGCCGATCACGCC 61.850 66.667 0.00 0.00 38.29 5.68
161 162 4.541482 GTCGCCGATCACGCCGTA 62.541 66.667 0.00 0.00 41.03 4.02
162 163 4.246206 TCGCCGATCACGCCGTAG 62.246 66.667 0.00 0.00 41.03 3.51
164 165 4.865761 GCCGATCACGCCGTAGCA 62.866 66.667 0.00 0.00 39.83 3.49
165 166 2.655364 CCGATCACGCCGTAGCAG 60.655 66.667 0.00 0.00 39.83 4.24
166 167 2.407616 CGATCACGCCGTAGCAGA 59.592 61.111 0.00 0.00 39.83 4.26
167 168 1.939785 CGATCACGCCGTAGCAGAC 60.940 63.158 0.00 0.00 39.83 3.51
175 176 2.127003 CGTAGCAGACGTCGTGCA 60.127 61.111 29.03 18.18 46.86 4.57
176 177 2.426183 CGTAGCAGACGTCGTGCAC 61.426 63.158 29.03 23.83 46.86 4.57
185 186 4.374702 GTCGTGCACGGCTGCTTG 62.375 66.667 34.85 7.20 44.57 4.01
189 190 4.045771 TGCACGGCTGCTTGCATG 62.046 61.111 20.51 0.00 43.79 4.06
194 195 3.740397 GGCTGCTTGCATGCGTGA 61.740 61.111 18.54 0.28 45.15 4.35
195 196 2.503375 GCTGCTTGCATGCGTGAC 60.503 61.111 18.54 2.95 42.31 3.67
196 197 2.202260 CTGCTTGCATGCGTGACG 60.202 61.111 18.54 0.00 35.36 4.35
197 198 2.664518 TGCTTGCATGCGTGACGA 60.665 55.556 18.54 0.07 35.36 4.20
198 199 2.173951 CTGCTTGCATGCGTGACGAA 62.174 55.000 18.54 0.00 35.36 3.85
199 200 1.082169 GCTTGCATGCGTGACGAAA 60.082 52.632 10.10 0.00 0.00 3.46
200 201 0.660005 GCTTGCATGCGTGACGAAAA 60.660 50.000 10.10 0.00 0.00 2.29
201 202 1.321016 CTTGCATGCGTGACGAAAAG 58.679 50.000 10.10 4.47 0.00 2.27
202 203 0.660005 TTGCATGCGTGACGAAAAGC 60.660 50.000 10.10 8.10 0.00 3.51
203 204 1.207593 GCATGCGTGACGAAAAGCT 59.792 52.632 10.10 0.00 0.00 3.74
204 205 0.790866 GCATGCGTGACGAAAAGCTC 60.791 55.000 10.10 0.00 0.00 4.09
215 216 3.536158 CGAAAAGCTCGGATCAAACAA 57.464 42.857 0.00 0.00 44.20 2.83
216 217 3.884169 CGAAAAGCTCGGATCAAACAAA 58.116 40.909 0.00 0.00 44.20 2.83
217 218 4.286910 CGAAAAGCTCGGATCAAACAAAA 58.713 39.130 0.00 0.00 44.20 2.44
218 219 4.379793 CGAAAAGCTCGGATCAAACAAAAG 59.620 41.667 0.00 0.00 44.20 2.27
219 220 5.514274 AAAAGCTCGGATCAAACAAAAGA 57.486 34.783 0.00 0.00 0.00 2.52
220 221 5.514274 AAAGCTCGGATCAAACAAAAGAA 57.486 34.783 0.00 0.00 0.00 2.52
221 222 5.514274 AAGCTCGGATCAAACAAAAGAAA 57.486 34.783 0.00 0.00 0.00 2.52
222 223 5.712152 AGCTCGGATCAAACAAAAGAAAT 57.288 34.783 0.00 0.00 0.00 2.17
223 224 5.703876 AGCTCGGATCAAACAAAAGAAATC 58.296 37.500 0.00 0.00 0.00 2.17
224 225 4.554973 GCTCGGATCAAACAAAAGAAATCG 59.445 41.667 0.00 0.00 0.00 3.34
225 226 5.682943 TCGGATCAAACAAAAGAAATCGT 57.317 34.783 0.00 0.00 0.00 3.73
226 227 5.448438 TCGGATCAAACAAAAGAAATCGTG 58.552 37.500 0.00 0.00 0.00 4.35
227 228 5.008217 TCGGATCAAACAAAAGAAATCGTGT 59.992 36.000 0.00 0.00 0.00 4.49
228 229 6.203145 TCGGATCAAACAAAAGAAATCGTGTA 59.797 34.615 0.00 0.00 0.00 2.90
229 230 6.853872 CGGATCAAACAAAAGAAATCGTGTAA 59.146 34.615 0.00 0.00 0.00 2.41
230 231 7.149192 CGGATCAAACAAAAGAAATCGTGTAAC 60.149 37.037 0.00 0.00 0.00 2.50
259 260 5.757850 AGCATACTAGCATGGTTAAAAGC 57.242 39.130 1.12 2.96 32.89 3.51
260 261 5.192927 AGCATACTAGCATGGTTAAAAGCA 58.807 37.500 1.12 0.00 41.10 3.91
261 262 5.652014 AGCATACTAGCATGGTTAAAAGCAA 59.348 36.000 1.12 0.00 40.14 3.91
262 263 5.973565 GCATACTAGCATGGTTAAAAGCAAG 59.026 40.000 1.12 0.00 40.14 4.01
263 264 6.498304 CATACTAGCATGGTTAAAAGCAAGG 58.502 40.000 1.12 0.00 40.14 3.61
264 265 4.407365 ACTAGCATGGTTAAAAGCAAGGT 58.593 39.130 1.12 6.97 40.14 3.50
265 266 5.566469 ACTAGCATGGTTAAAAGCAAGGTA 58.434 37.500 1.12 8.25 40.14 3.08
266 267 6.007703 ACTAGCATGGTTAAAAGCAAGGTAA 58.992 36.000 1.12 0.00 37.54 2.85
267 268 5.391312 AGCATGGTTAAAAGCAAGGTAAG 57.609 39.130 0.00 0.00 40.14 2.34
268 269 5.076873 AGCATGGTTAAAAGCAAGGTAAGA 58.923 37.500 0.00 0.00 40.14 2.10
269 270 5.048013 AGCATGGTTAAAAGCAAGGTAAGAC 60.048 40.000 0.00 0.00 40.14 3.01
270 271 5.048013 GCATGGTTAAAAGCAAGGTAAGACT 60.048 40.000 0.00 0.00 40.14 3.24
271 272 6.150474 GCATGGTTAAAAGCAAGGTAAGACTA 59.850 38.462 0.00 0.00 40.14 2.59
272 273 7.527457 CATGGTTAAAAGCAAGGTAAGACTAC 58.473 38.462 0.00 0.00 40.14 2.73
273 274 6.657966 ATGGTTAAAAGCAAGGTAAGACTACC 59.342 38.462 0.00 0.00 41.90 3.18
284 285 5.695424 GGTAAGACTACCTCCCATTTTCT 57.305 43.478 0.00 0.00 43.92 2.52
285 286 5.672503 GGTAAGACTACCTCCCATTTTCTC 58.327 45.833 0.00 0.00 43.92 2.87
286 287 5.189145 GGTAAGACTACCTCCCATTTTCTCA 59.811 44.000 0.00 0.00 43.92 3.27
287 288 5.843019 AAGACTACCTCCCATTTTCTCAA 57.157 39.130 0.00 0.00 0.00 3.02
288 289 5.843019 AGACTACCTCCCATTTTCTCAAA 57.157 39.130 0.00 0.00 0.00 2.69
289 290 5.810095 AGACTACCTCCCATTTTCTCAAAG 58.190 41.667 0.00 0.00 0.00 2.77
290 291 4.923415 ACTACCTCCCATTTTCTCAAAGG 58.077 43.478 0.00 0.00 0.00 3.11
291 292 3.903530 ACCTCCCATTTTCTCAAAGGT 57.096 42.857 0.00 0.00 0.00 3.50
292 293 4.199002 ACCTCCCATTTTCTCAAAGGTT 57.801 40.909 0.00 0.00 31.76 3.50
293 294 4.556697 ACCTCCCATTTTCTCAAAGGTTT 58.443 39.130 0.00 0.00 31.76 3.27
294 295 4.344968 ACCTCCCATTTTCTCAAAGGTTTG 59.655 41.667 0.00 0.00 39.48 2.93
295 296 4.588528 CCTCCCATTTTCTCAAAGGTTTGA 59.411 41.667 5.09 5.09 44.31 2.69
296 297 5.070313 CCTCCCATTTTCTCAAAGGTTTGAA 59.930 40.000 6.61 0.00 45.61 2.69
297 298 5.912892 TCCCATTTTCTCAAAGGTTTGAAC 58.087 37.500 6.61 0.00 45.61 3.18
298 299 5.660864 TCCCATTTTCTCAAAGGTTTGAACT 59.339 36.000 6.61 0.00 45.61 3.01
299 300 5.985530 CCCATTTTCTCAAAGGTTTGAACTC 59.014 40.000 6.61 0.00 45.61 3.01
300 301 5.687285 CCATTTTCTCAAAGGTTTGAACTCG 59.313 40.000 6.61 0.00 45.61 4.18
301 302 6.459573 CCATTTTCTCAAAGGTTTGAACTCGA 60.460 38.462 6.61 0.00 45.61 4.04
302 303 6.693315 TTTTCTCAAAGGTTTGAACTCGAT 57.307 33.333 6.61 0.00 45.61 3.59
303 304 5.924475 TTCTCAAAGGTTTGAACTCGATC 57.076 39.130 6.61 0.00 45.61 3.69
304 305 4.956085 TCTCAAAGGTTTGAACTCGATCA 58.044 39.130 6.61 0.00 45.61 2.92
305 306 4.991056 TCTCAAAGGTTTGAACTCGATCAG 59.009 41.667 6.61 0.00 45.61 2.90
306 307 3.498397 TCAAAGGTTTGAACTCGATCAGC 59.502 43.478 2.59 0.00 43.62 4.26
307 308 3.409026 AAGGTTTGAACTCGATCAGCT 57.591 42.857 0.00 0.00 0.00 4.24
308 309 2.966050 AGGTTTGAACTCGATCAGCTC 58.034 47.619 0.00 0.00 0.00 4.09
309 310 7.570139 CAAAGGTTTGAACTCGATCAGCTCG 62.570 48.000 0.00 0.00 43.50 5.03
319 320 3.567576 CGATCAGCTCGGTAGATCAAT 57.432 47.619 10.57 0.00 43.82 2.57
320 321 3.240884 CGATCAGCTCGGTAGATCAATG 58.759 50.000 10.57 0.00 43.82 2.82
321 322 3.057946 CGATCAGCTCGGTAGATCAATGA 60.058 47.826 10.57 0.00 43.82 2.57
322 323 4.380339 CGATCAGCTCGGTAGATCAATGAT 60.380 45.833 10.57 0.00 43.82 2.45
323 324 4.511617 TCAGCTCGGTAGATCAATGATC 57.488 45.455 15.01 15.01 39.17 2.92
324 325 8.276332 CGATCAGCTCGGTAGATCAATGATCT 62.276 46.154 26.52 26.52 45.55 2.75
335 336 4.689812 AGATCAATGATCTGTATGCTTCGC 59.310 41.667 23.51 0.00 46.21 4.70
336 337 4.063998 TCAATGATCTGTATGCTTCGCT 57.936 40.909 0.00 0.00 0.00 4.93
337 338 4.053983 TCAATGATCTGTATGCTTCGCTC 58.946 43.478 0.00 0.00 0.00 5.03
338 339 4.056740 CAATGATCTGTATGCTTCGCTCT 58.943 43.478 0.00 0.00 0.00 4.09
339 340 3.808466 TGATCTGTATGCTTCGCTCTT 57.192 42.857 0.00 0.00 0.00 2.85
340 341 3.711086 TGATCTGTATGCTTCGCTCTTC 58.289 45.455 0.00 0.00 0.00 2.87
341 342 2.586258 TCTGTATGCTTCGCTCTTCC 57.414 50.000 0.00 0.00 0.00 3.46
342 343 1.137086 TCTGTATGCTTCGCTCTTCCC 59.863 52.381 0.00 0.00 0.00 3.97
343 344 1.137872 CTGTATGCTTCGCTCTTCCCT 59.862 52.381 0.00 0.00 0.00 4.20
344 345 1.137086 TGTATGCTTCGCTCTTCCCTC 59.863 52.381 0.00 0.00 0.00 4.30
345 346 0.753262 TATGCTTCGCTCTTCCCTCC 59.247 55.000 0.00 0.00 0.00 4.30
346 347 0.980231 ATGCTTCGCTCTTCCCTCCT 60.980 55.000 0.00 0.00 0.00 3.69
347 348 1.153469 GCTTCGCTCTTCCCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
348 349 1.153469 CTTCGCTCTTCCCTCCTGC 60.153 63.158 0.00 0.00 0.00 4.85
349 350 2.897641 CTTCGCTCTTCCCTCCTGCG 62.898 65.000 0.00 0.00 46.71 5.18
351 352 3.225235 GCTCTTCCCTCCTGCGAT 58.775 61.111 0.00 0.00 0.00 4.58
352 353 2.431023 GCTCTTCCCTCCTGCGATA 58.569 57.895 0.00 0.00 0.00 2.92
353 354 0.753262 GCTCTTCCCTCCTGCGATAA 59.247 55.000 0.00 0.00 0.00 1.75
354 355 1.270041 GCTCTTCCCTCCTGCGATAAG 60.270 57.143 0.00 0.00 0.00 1.73
355 356 2.311463 CTCTTCCCTCCTGCGATAAGA 58.689 52.381 0.00 0.00 0.00 2.10
356 357 2.695666 CTCTTCCCTCCTGCGATAAGAA 59.304 50.000 0.00 0.00 0.00 2.52
357 358 3.309296 TCTTCCCTCCTGCGATAAGAAT 58.691 45.455 0.00 0.00 0.00 2.40
358 359 3.711704 TCTTCCCTCCTGCGATAAGAATT 59.288 43.478 0.00 0.00 0.00 2.17
359 360 4.164221 TCTTCCCTCCTGCGATAAGAATTT 59.836 41.667 0.00 0.00 0.00 1.82
360 361 4.073293 TCCCTCCTGCGATAAGAATTTC 57.927 45.455 0.00 0.00 0.00 2.17
361 362 3.454447 TCCCTCCTGCGATAAGAATTTCA 59.546 43.478 0.00 0.00 0.00 2.69
362 363 4.080582 TCCCTCCTGCGATAAGAATTTCAA 60.081 41.667 0.00 0.00 0.00 2.69
363 364 4.823989 CCCTCCTGCGATAAGAATTTCAAT 59.176 41.667 0.00 0.00 0.00 2.57
364 365 5.300286 CCCTCCTGCGATAAGAATTTCAATT 59.700 40.000 0.00 0.00 0.00 2.32
365 366 6.204359 CCTCCTGCGATAAGAATTTCAATTG 58.796 40.000 0.00 0.00 0.00 2.32
366 367 5.581605 TCCTGCGATAAGAATTTCAATTGC 58.418 37.500 0.00 13.28 0.00 3.56
367 368 5.357878 TCCTGCGATAAGAATTTCAATTGCT 59.642 36.000 17.82 0.00 31.29 3.91
368 369 6.542005 TCCTGCGATAAGAATTTCAATTGCTA 59.458 34.615 17.82 0.00 31.29 3.49
369 370 6.854892 CCTGCGATAAGAATTTCAATTGCTAG 59.145 38.462 17.82 14.32 31.29 3.42
370 371 6.201517 TGCGATAAGAATTTCAATTGCTAGC 58.798 36.000 8.10 8.10 31.29 3.42
371 372 6.183360 TGCGATAAGAATTTCAATTGCTAGCA 60.183 34.615 14.93 14.93 31.29 3.49
372 373 6.860023 GCGATAAGAATTTCAATTGCTAGCAT 59.140 34.615 20.13 0.51 0.00 3.79
373 374 7.060403 GCGATAAGAATTTCAATTGCTAGCATC 59.940 37.037 20.13 10.42 0.00 3.91
374 375 8.288208 CGATAAGAATTTCAATTGCTAGCATCT 58.712 33.333 20.13 12.70 0.00 2.90
377 378 6.952743 AGAATTTCAATTGCTAGCATCTACG 58.047 36.000 20.13 6.04 0.00 3.51
378 379 5.679734 ATTTCAATTGCTAGCATCTACGG 57.320 39.130 20.13 5.67 0.00 4.02
379 380 3.819564 TCAATTGCTAGCATCTACGGT 57.180 42.857 20.13 0.00 0.00 4.83
380 381 4.137116 TCAATTGCTAGCATCTACGGTT 57.863 40.909 20.13 2.66 0.00 4.44
381 382 5.270893 TCAATTGCTAGCATCTACGGTTA 57.729 39.130 20.13 0.00 0.00 2.85
382 383 5.666462 TCAATTGCTAGCATCTACGGTTAA 58.334 37.500 20.13 0.00 0.00 2.01
383 384 6.110033 TCAATTGCTAGCATCTACGGTTAAA 58.890 36.000 20.13 0.00 0.00 1.52
384 385 6.765989 TCAATTGCTAGCATCTACGGTTAAAT 59.234 34.615 20.13 0.86 0.00 1.40
385 386 7.929245 TCAATTGCTAGCATCTACGGTTAAATA 59.071 33.333 20.13 0.00 0.00 1.40
386 387 8.721478 CAATTGCTAGCATCTACGGTTAAATAT 58.279 33.333 20.13 0.14 0.00 1.28
387 388 9.938280 AATTGCTAGCATCTACGGTTAAATATA 57.062 29.630 20.13 0.00 0.00 0.86
388 389 8.752766 TTGCTAGCATCTACGGTTAAATATAC 57.247 34.615 20.13 0.00 0.00 1.47
389 390 7.888424 TGCTAGCATCTACGGTTAAATATACA 58.112 34.615 14.93 0.00 0.00 2.29
390 391 8.027189 TGCTAGCATCTACGGTTAAATATACAG 58.973 37.037 14.93 0.00 0.00 2.74
391 392 8.027771 GCTAGCATCTACGGTTAAATATACAGT 58.972 37.037 10.63 0.00 0.00 3.55
392 393 9.343103 CTAGCATCTACGGTTAAATATACAGTG 57.657 37.037 0.00 0.00 0.00 3.66
393 394 7.948357 AGCATCTACGGTTAAATATACAGTGA 58.052 34.615 0.00 0.00 0.00 3.41
394 395 8.082852 AGCATCTACGGTTAAATATACAGTGAG 58.917 37.037 0.00 0.00 0.00 3.51
395 396 8.080417 GCATCTACGGTTAAATATACAGTGAGA 58.920 37.037 0.00 0.00 0.00 3.27
396 397 9.613957 CATCTACGGTTAAATATACAGTGAGAG 57.386 37.037 0.00 0.00 0.00 3.20
397 398 8.162878 TCTACGGTTAAATATACAGTGAGAGG 57.837 38.462 0.00 0.00 0.00 3.69
398 399 6.786967 ACGGTTAAATATACAGTGAGAGGT 57.213 37.500 0.00 0.00 0.00 3.85
399 400 6.803642 ACGGTTAAATATACAGTGAGAGGTC 58.196 40.000 0.00 0.00 0.00 3.85
400 401 6.379133 ACGGTTAAATATACAGTGAGAGGTCA 59.621 38.462 0.00 0.00 0.00 4.02
401 402 7.093640 ACGGTTAAATATACAGTGAGAGGTCAA 60.094 37.037 0.00 0.00 33.27 3.18
402 403 7.762615 CGGTTAAATATACAGTGAGAGGTCAAA 59.237 37.037 0.00 0.00 33.27 2.69
403 404 9.614792 GGTTAAATATACAGTGAGAGGTCAAAT 57.385 33.333 0.00 0.00 33.27 2.32
406 407 8.954950 AAATATACAGTGAGAGGTCAAATGAG 57.045 34.615 0.00 0.00 33.27 2.90
407 408 7.904558 ATATACAGTGAGAGGTCAAATGAGA 57.095 36.000 0.00 0.00 33.27 3.27
408 409 4.264460 ACAGTGAGAGGTCAAATGAGAC 57.736 45.455 0.00 0.00 33.27 3.36
409 410 3.249091 CAGTGAGAGGTCAAATGAGACG 58.751 50.000 0.00 0.00 39.42 4.18
410 411 1.996191 GTGAGAGGTCAAATGAGACGC 59.004 52.381 0.00 0.00 39.42 5.19
411 412 1.618343 TGAGAGGTCAAATGAGACGCA 59.382 47.619 0.00 0.00 39.42 5.24
412 413 1.996191 GAGAGGTCAAATGAGACGCAC 59.004 52.381 0.00 0.00 39.42 5.34
413 414 0.716108 GAGGTCAAATGAGACGCACG 59.284 55.000 0.00 0.00 39.42 5.34
414 415 1.132640 GGTCAAATGAGACGCACGC 59.867 57.895 0.00 0.00 39.42 5.34
415 416 1.132640 GTCAAATGAGACGCACGCC 59.867 57.895 0.00 0.00 0.00 5.68
416 417 2.032634 TCAAATGAGACGCACGCCC 61.033 57.895 0.00 0.00 0.00 6.13
417 418 2.746277 AAATGAGACGCACGCCCC 60.746 61.111 0.00 0.00 0.00 5.80
418 419 3.254024 AAATGAGACGCACGCCCCT 62.254 57.895 0.00 0.00 0.00 4.79
419 420 2.748058 AAATGAGACGCACGCCCCTT 62.748 55.000 0.00 0.00 0.00 3.95
420 421 3.665675 ATGAGACGCACGCCCCTTC 62.666 63.158 0.00 0.00 0.00 3.46
421 422 4.373116 GAGACGCACGCCCCTTCA 62.373 66.667 0.00 0.00 0.00 3.02
422 423 4.379243 AGACGCACGCCCCTTCAG 62.379 66.667 0.00 0.00 0.00 3.02
423 424 4.681978 GACGCACGCCCCTTCAGT 62.682 66.667 0.00 0.00 0.00 3.41
424 425 4.250305 ACGCACGCCCCTTCAGTT 62.250 61.111 0.00 0.00 0.00 3.16
425 426 3.423154 CGCACGCCCCTTCAGTTC 61.423 66.667 0.00 0.00 0.00 3.01
426 427 2.281484 GCACGCCCCTTCAGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
427 428 2.617274 GCACGCCCCTTCAGTTCAC 61.617 63.158 0.00 0.00 0.00 3.18
428 429 1.966451 CACGCCCCTTCAGTTCACC 60.966 63.158 0.00 0.00 0.00 4.02
429 430 2.147387 ACGCCCCTTCAGTTCACCT 61.147 57.895 0.00 0.00 0.00 4.00
430 431 1.073199 CGCCCCTTCAGTTCACCTT 59.927 57.895 0.00 0.00 0.00 3.50
431 432 0.955919 CGCCCCTTCAGTTCACCTTC 60.956 60.000 0.00 0.00 0.00 3.46
432 433 0.609406 GCCCCTTCAGTTCACCTTCC 60.609 60.000 0.00 0.00 0.00 3.46
433 434 1.068121 CCCCTTCAGTTCACCTTCCT 58.932 55.000 0.00 0.00 0.00 3.36
434 435 1.271597 CCCCTTCAGTTCACCTTCCTG 60.272 57.143 0.00 0.00 0.00 3.86
435 436 1.699634 CCCTTCAGTTCACCTTCCTGA 59.300 52.381 0.00 0.00 33.59 3.86
436 437 2.106511 CCCTTCAGTTCACCTTCCTGAA 59.893 50.000 0.00 0.00 41.55 3.02
448 449 7.938140 TCACCTTCCTGAACTTAATTAATGG 57.062 36.000 0.00 0.00 0.00 3.16
449 450 6.889722 TCACCTTCCTGAACTTAATTAATGGG 59.110 38.462 0.00 0.00 0.00 4.00
450 451 6.096846 CACCTTCCTGAACTTAATTAATGGGG 59.903 42.308 0.00 0.00 0.00 4.96
451 452 5.069119 CCTTCCTGAACTTAATTAATGGGGC 59.931 44.000 0.00 0.00 0.00 5.80
452 453 5.199982 TCCTGAACTTAATTAATGGGGCA 57.800 39.130 0.00 0.00 0.00 5.36
453 454 4.953579 TCCTGAACTTAATTAATGGGGCAC 59.046 41.667 0.00 0.00 0.00 5.01
454 455 4.956075 CCTGAACTTAATTAATGGGGCACT 59.044 41.667 0.00 0.00 0.00 4.40
455 456 5.422012 CCTGAACTTAATTAATGGGGCACTT 59.578 40.000 0.00 0.00 0.00 3.16
456 457 6.405842 CCTGAACTTAATTAATGGGGCACTTC 60.406 42.308 0.00 0.00 0.00 3.01
457 458 5.124776 TGAACTTAATTAATGGGGCACTTCG 59.875 40.000 0.00 0.00 0.00 3.79
458 459 4.595986 ACTTAATTAATGGGGCACTTCGT 58.404 39.130 0.00 0.00 0.00 3.85
459 460 4.638865 ACTTAATTAATGGGGCACTTCGTC 59.361 41.667 0.00 0.00 0.00 4.20
460 461 3.366052 AATTAATGGGGCACTTCGTCT 57.634 42.857 0.00 0.00 0.00 4.18
461 462 2.871096 TTAATGGGGCACTTCGTCTT 57.129 45.000 0.00 0.00 0.00 3.01
462 463 2.396590 TAATGGGGCACTTCGTCTTC 57.603 50.000 0.00 0.00 0.00 2.87
463 464 0.322546 AATGGGGCACTTCGTCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
464 465 1.201429 ATGGGGCACTTCGTCTTCCT 61.201 55.000 0.00 0.00 0.00 3.36
465 466 0.543410 TGGGGCACTTCGTCTTCCTA 60.543 55.000 0.00 0.00 0.00 2.94
466 467 0.175989 GGGGCACTTCGTCTTCCTAG 59.824 60.000 0.00 0.00 0.00 3.02
467 468 0.175989 GGGCACTTCGTCTTCCTAGG 59.824 60.000 0.82 0.82 0.00 3.02
468 469 0.460459 GGCACTTCGTCTTCCTAGGC 60.460 60.000 2.96 0.00 0.00 3.93
469 470 0.533032 GCACTTCGTCTTCCTAGGCT 59.467 55.000 2.96 0.00 0.00 4.58
470 471 1.066787 GCACTTCGTCTTCCTAGGCTT 60.067 52.381 2.96 0.00 0.00 4.35
471 472 2.165845 GCACTTCGTCTTCCTAGGCTTA 59.834 50.000 2.96 0.00 0.00 3.09
472 473 3.368116 GCACTTCGTCTTCCTAGGCTTAA 60.368 47.826 2.96 0.00 0.00 1.85
473 474 4.680975 GCACTTCGTCTTCCTAGGCTTAAT 60.681 45.833 2.96 0.00 0.00 1.40
474 475 5.420409 CACTTCGTCTTCCTAGGCTTAATT 58.580 41.667 2.96 0.00 0.00 1.40
475 476 6.570692 CACTTCGTCTTCCTAGGCTTAATTA 58.429 40.000 2.96 0.00 0.00 1.40
476 477 7.039882 CACTTCGTCTTCCTAGGCTTAATTAA 58.960 38.462 2.96 0.00 0.00 1.40
477 478 7.222999 CACTTCGTCTTCCTAGGCTTAATTAAG 59.777 40.741 19.08 19.08 36.40 1.85
478 479 6.786967 TCGTCTTCCTAGGCTTAATTAAGT 57.213 37.500 22.94 9.69 35.75 2.24
479 480 7.179076 TCGTCTTCCTAGGCTTAATTAAGTT 57.821 36.000 22.94 15.30 35.75 2.66
480 481 7.263496 TCGTCTTCCTAGGCTTAATTAAGTTC 58.737 38.462 22.94 16.29 35.75 3.01
481 482 6.479331 CGTCTTCCTAGGCTTAATTAAGTTCC 59.521 42.308 22.94 17.15 35.75 3.62
482 483 7.566569 GTCTTCCTAGGCTTAATTAAGTTCCT 58.433 38.462 22.94 21.97 35.75 3.36
483 484 7.496263 GTCTTCCTAGGCTTAATTAAGTTCCTG 59.504 40.741 24.05 16.87 35.75 3.86
484 485 6.886178 TCCTAGGCTTAATTAAGTTCCTGT 57.114 37.500 24.05 10.01 35.75 4.00
485 486 7.266905 TCCTAGGCTTAATTAAGTTCCTGTT 57.733 36.000 24.05 9.50 35.75 3.16
486 487 8.383374 TCCTAGGCTTAATTAAGTTCCTGTTA 57.617 34.615 24.05 11.16 35.75 2.41
487 488 8.999895 TCCTAGGCTTAATTAAGTTCCTGTTAT 58.000 33.333 24.05 8.99 35.75 1.89
488 489 9.628500 CCTAGGCTTAATTAAGTTCCTGTTATT 57.372 33.333 24.05 8.49 35.75 1.40
490 491 8.293699 AGGCTTAATTAAGTTCCTGTTATTGG 57.706 34.615 22.94 0.00 35.75 3.16
491 492 7.342026 AGGCTTAATTAAGTTCCTGTTATTGGG 59.658 37.037 22.94 0.00 35.75 4.12
492 493 6.978659 GCTTAATTAAGTTCCTGTTATTGGGC 59.021 38.462 22.94 3.69 35.75 5.36
493 494 5.576447 AATTAAGTTCCTGTTATTGGGCG 57.424 39.130 0.00 0.00 0.00 6.13
494 495 2.871096 AAGTTCCTGTTATTGGGCGA 57.129 45.000 0.00 0.00 0.00 5.54
495 496 3.366052 AAGTTCCTGTTATTGGGCGAT 57.634 42.857 0.00 0.00 0.00 4.58
496 497 2.919228 AGTTCCTGTTATTGGGCGATC 58.081 47.619 0.00 0.00 0.00 3.69
497 498 1.597663 GTTCCTGTTATTGGGCGATCG 59.402 52.381 11.69 11.69 0.00 3.69
498 499 1.116308 TCCTGTTATTGGGCGATCGA 58.884 50.000 21.57 0.00 0.00 3.59
499 500 1.691976 TCCTGTTATTGGGCGATCGAT 59.308 47.619 21.57 5.72 0.00 3.59
500 501 2.069273 CCTGTTATTGGGCGATCGATC 58.931 52.381 21.57 15.68 0.00 3.69
511 512 2.476873 CGATCGATCGTCTCACCTTT 57.523 50.000 33.95 0.00 44.74 3.11
512 513 2.798680 CGATCGATCGTCTCACCTTTT 58.201 47.619 33.95 0.00 44.74 2.27
513 514 3.179830 CGATCGATCGTCTCACCTTTTT 58.820 45.455 33.95 0.00 44.74 1.94
514 515 4.348656 CGATCGATCGTCTCACCTTTTTA 58.651 43.478 33.95 0.00 44.74 1.52
515 516 4.976731 CGATCGATCGTCTCACCTTTTTAT 59.023 41.667 33.95 0.00 44.74 1.40
516 517 5.459107 CGATCGATCGTCTCACCTTTTTATT 59.541 40.000 33.95 0.00 44.74 1.40
517 518 6.345093 CGATCGATCGTCTCACCTTTTTATTC 60.345 42.308 33.95 0.00 44.74 1.75
518 519 4.796830 TCGATCGTCTCACCTTTTTATTCG 59.203 41.667 15.94 0.00 0.00 3.34
519 520 4.796830 CGATCGTCTCACCTTTTTATTCGA 59.203 41.667 7.03 0.00 0.00 3.71
520 521 5.287752 CGATCGTCTCACCTTTTTATTCGAA 59.712 40.000 7.03 0.00 0.00 3.71
521 522 6.183360 CGATCGTCTCACCTTTTTATTCGAAA 60.183 38.462 7.03 0.00 0.00 3.46
522 523 6.847956 TCGTCTCACCTTTTTATTCGAAAA 57.152 33.333 0.00 0.00 0.00 2.29
523 524 7.429636 TCGTCTCACCTTTTTATTCGAAAAT 57.570 32.000 0.00 0.00 0.00 1.82
524 525 7.867752 TCGTCTCACCTTTTTATTCGAAAATT 58.132 30.769 0.00 0.00 0.00 1.82
525 526 7.801315 TCGTCTCACCTTTTTATTCGAAAATTG 59.199 33.333 0.00 0.00 0.00 2.32
526 527 7.801315 CGTCTCACCTTTTTATTCGAAAATTGA 59.199 33.333 0.00 0.00 0.00 2.57
527 528 9.458374 GTCTCACCTTTTTATTCGAAAATTGAA 57.542 29.630 0.00 0.00 0.00 2.69
530 531 9.123709 TCACCTTTTTATTCGAAAATTGAATCG 57.876 29.630 0.00 3.00 37.28 3.34
531 532 9.123709 CACCTTTTTATTCGAAAATTGAATCGA 57.876 29.630 0.00 7.04 45.48 3.59
538 539 5.915812 TCGAAAATTGAATCGAGTGTTCA 57.084 34.783 0.00 0.00 42.61 3.18
539 540 5.675970 TCGAAAATTGAATCGAGTGTTCAC 58.324 37.500 0.00 0.00 42.61 3.18
540 541 4.846137 CGAAAATTGAATCGAGTGTTCACC 59.154 41.667 0.00 0.00 41.43 4.02
541 542 4.404507 AAATTGAATCGAGTGTTCACCG 57.595 40.909 0.00 3.90 35.47 4.94
542 543 1.790755 TTGAATCGAGTGTTCACCGG 58.209 50.000 0.00 0.00 35.47 5.28
543 544 0.963225 TGAATCGAGTGTTCACCGGA 59.037 50.000 9.46 5.43 31.07 5.14
544 545 1.067846 TGAATCGAGTGTTCACCGGAG 60.068 52.381 9.46 0.00 31.07 4.63
545 546 0.389948 AATCGAGTGTTCACCGGAGC 60.390 55.000 9.46 0.00 0.00 4.70
546 547 1.532604 ATCGAGTGTTCACCGGAGCA 61.533 55.000 9.46 0.00 31.27 4.26
547 548 1.079819 CGAGTGTTCACCGGAGCAT 60.080 57.895 9.46 0.00 36.61 3.79
548 549 0.172578 CGAGTGTTCACCGGAGCATA 59.827 55.000 9.46 0.00 36.61 3.14
549 550 1.799181 CGAGTGTTCACCGGAGCATAG 60.799 57.143 9.46 0.00 36.61 2.23
550 551 0.108138 AGTGTTCACCGGAGCATAGC 60.108 55.000 9.46 0.00 36.61 2.97
551 552 0.108138 GTGTTCACCGGAGCATAGCT 60.108 55.000 9.46 0.00 43.88 3.32
552 553 0.108186 TGTTCACCGGAGCATAGCTG 60.108 55.000 9.46 0.00 39.88 4.24
562 563 3.095911 CATAGCTGCAGTGCACCG 58.904 61.111 15.37 6.88 33.79 4.94
563 564 2.124983 ATAGCTGCAGTGCACCGG 60.125 61.111 15.37 6.05 33.79 5.28
564 565 2.659063 ATAGCTGCAGTGCACCGGA 61.659 57.895 15.37 3.02 33.79 5.14
565 566 2.859273 ATAGCTGCAGTGCACCGGAC 62.859 60.000 15.37 0.00 33.79 4.79
567 568 4.662961 CTGCAGTGCACCGGACGA 62.663 66.667 15.37 0.00 33.79 4.20
568 569 4.228567 TGCAGTGCACCGGACGAA 62.229 61.111 15.37 0.00 31.71 3.85
569 570 3.414700 GCAGTGCACCGGACGAAG 61.415 66.667 14.63 0.00 0.00 3.79
581 582 4.240049 ACGAAGTCGAAGAACCGC 57.760 55.556 7.87 0.00 29.74 5.68
582 583 1.728426 ACGAAGTCGAAGAACCGCG 60.728 57.895 7.87 0.00 29.74 6.46
583 584 2.770259 GAAGTCGAAGAACCGCGC 59.230 61.111 0.00 0.00 39.69 6.86
584 585 2.727684 GAAGTCGAAGAACCGCGCC 61.728 63.158 0.00 0.00 39.69 6.53
585 586 3.509137 AAGTCGAAGAACCGCGCCA 62.509 57.895 0.00 0.00 39.69 5.69
586 587 3.774702 GTCGAAGAACCGCGCCAC 61.775 66.667 0.00 0.00 39.69 5.01
589 590 2.746277 GAAGAACCGCGCCACCAT 60.746 61.111 0.00 0.00 0.00 3.55
590 591 3.039202 GAAGAACCGCGCCACCATG 62.039 63.158 0.00 0.00 0.00 3.66
591 592 3.842925 AAGAACCGCGCCACCATGT 62.843 57.895 0.00 0.00 0.00 3.21
592 593 3.799755 GAACCGCGCCACCATGTC 61.800 66.667 0.00 0.00 0.00 3.06
597 598 4.760047 GCGCCACCATGTCCGACT 62.760 66.667 0.00 0.00 0.00 4.18
598 599 2.815211 CGCCACCATGTCCGACTG 60.815 66.667 0.00 0.00 0.00 3.51
599 600 2.347490 GCCACCATGTCCGACTGT 59.653 61.111 0.00 0.00 0.00 3.55
600 601 1.741770 GCCACCATGTCCGACTGTC 60.742 63.158 0.00 0.00 0.00 3.51
601 602 1.079127 CCACCATGTCCGACTGTCC 60.079 63.158 1.55 0.00 0.00 4.02
602 603 1.544825 CCACCATGTCCGACTGTCCT 61.545 60.000 1.55 0.00 0.00 3.85
603 604 0.321671 CACCATGTCCGACTGTCCTT 59.678 55.000 1.55 0.00 0.00 3.36
604 605 1.056660 ACCATGTCCGACTGTCCTTT 58.943 50.000 1.55 0.00 0.00 3.11
605 606 1.270839 ACCATGTCCGACTGTCCTTTG 60.271 52.381 1.55 0.00 0.00 2.77
617 618 3.763897 ACTGTCCTTTGCATGGGTTAATC 59.236 43.478 6.44 0.00 0.00 1.75
686 687 5.297547 AGTTGACAAAAATAGCTCTCGTGA 58.702 37.500 0.00 0.00 0.00 4.35
699 700 4.081752 AGCTCTCGTGAGACATCTTTGAAT 60.082 41.667 18.27 0.00 42.73 2.57
706 707 5.163913 CGTGAGACATCTTTGAATCCAACTC 60.164 44.000 0.00 0.00 30.88 3.01
711 712 4.872691 ACATCTTTGAATCCAACTCTAGCG 59.127 41.667 0.00 0.00 30.88 4.26
763 766 2.080654 TGCAAAACAAGGGGTTAGCT 57.919 45.000 0.00 0.00 39.29 3.32
772 775 6.382919 AACAAGGGGTTAGCTATTTGAGTA 57.617 37.500 0.00 0.00 38.15 2.59
787 794 0.108992 GAGTAATGACACGCGGGACA 60.109 55.000 19.19 18.02 0.00 4.02
891 907 1.452651 CTCATCAGCGTGCCCCAAT 60.453 57.895 0.00 0.00 0.00 3.16
1045 1158 0.747644 CCAATCATGGCCGCAGTACA 60.748 55.000 0.00 0.00 40.58 2.90
1059 1172 1.271379 CAGTACAGTCCAGTGCCGTTA 59.729 52.381 0.00 0.00 0.00 3.18
1061 1174 2.029290 AGTACAGTCCAGTGCCGTTAAG 60.029 50.000 0.00 0.00 0.00 1.85
1211 1331 8.536175 TCTGTGTACTTCACCAATCATATTGTA 58.464 33.333 0.00 0.00 45.61 2.41
1300 1448 3.560453 CGACCCCCATTTTTCAGGTTCTA 60.560 47.826 0.00 0.00 0.00 2.10
1428 1593 1.675310 CCATTTGGCGGACAGAGCA 60.675 57.895 0.00 0.00 36.08 4.26
1482 1647 5.526846 GTGTGAATTGAAGAAAATGGGCAAA 59.473 36.000 0.00 0.00 0.00 3.68
1501 1666 4.557296 GCAAACAACTAAAGCAGCTGATCA 60.557 41.667 20.43 1.40 0.00 2.92
1512 1678 3.257375 AGCAGCTGATCAATTTGAAGCAA 59.743 39.130 20.43 1.30 33.78 3.91
1539 1705 4.806330 CAAATATGATGGCTGGAGCATTC 58.194 43.478 0.20 0.00 44.36 2.67
1572 1738 7.178274 TGTGTCATTGCTATGGGTTTCTTTTAT 59.822 33.333 8.30 0.00 32.40 1.40
1666 1850 5.774630 AGTTTCAGTTAGTGTGTCTAGCTC 58.225 41.667 0.00 0.00 37.95 4.09
1698 1882 2.431954 AGTCCAGGGATCATTTGCTG 57.568 50.000 0.00 0.00 0.00 4.41
1709 1899 2.690786 TCATTTGCTGGCTGAATTTGC 58.309 42.857 0.00 0.00 0.00 3.68
1710 1900 2.037381 TCATTTGCTGGCTGAATTTGCA 59.963 40.909 0.00 0.00 0.00 4.08
1789 1995 4.232820 AGTCCATGGATTATTTGTTCCCCT 59.767 41.667 19.62 2.01 0.00 4.79
1812 2335 7.417003 CCCTTGATGAATAAAATGCATCTGTCA 60.417 37.037 0.00 0.21 39.24 3.58
1821 2344 5.556355 AAATGCATCTGTCACATACACTG 57.444 39.130 0.00 0.00 33.45 3.66
1825 2348 3.538591 CATCTGTCACATACACTGGCAT 58.461 45.455 0.00 0.00 33.45 4.40
1830 2353 3.126831 GTCACATACACTGGCATCTAGC 58.873 50.000 0.00 0.00 44.65 3.42
1845 2368 5.298347 GCATCTAGCCCGTTCTTTAGTTAT 58.702 41.667 0.00 0.00 37.23 1.89
1880 2403 2.887152 GCAGAGTTCAGGGTCAAACAAT 59.113 45.455 0.00 0.00 0.00 2.71
1921 2447 4.609336 GCTGATGACGACTGTGAGAAAAAC 60.609 45.833 0.00 0.00 0.00 2.43
1991 2517 7.492524 TCATCATAGCTTCTTCATAGTTCGTT 58.507 34.615 0.00 0.00 0.00 3.85
1996 2522 5.063880 AGCTTCTTCATAGTTCGTTGGTTT 58.936 37.500 0.00 0.00 0.00 3.27
1998 2524 4.742438 TCTTCATAGTTCGTTGGTTTGC 57.258 40.909 0.00 0.00 0.00 3.68
2006 2532 1.298788 CGTTGGTTTGCCGTTGTCC 60.299 57.895 0.00 0.00 37.67 4.02
2022 2548 2.217750 TGTCCAACAACATGACTTCCG 58.782 47.619 0.00 0.00 0.00 4.30
2024 2550 0.240945 CCAACAACATGACTTCCGGC 59.759 55.000 0.00 0.00 0.00 6.13
2073 2599 2.927553 ACGTGTTATGGTCGACCTAC 57.072 50.000 33.39 26.15 36.82 3.18
2105 2631 5.406780 AGCAGTAACTTGATCTGAAGTTTCG 59.593 40.000 14.35 8.57 42.33 3.46
2131 2658 7.171848 GTGATCATCATCATTTCTTCCTCTCTG 59.828 40.741 0.00 0.00 41.26 3.35
2150 2677 0.321298 GGTTGGTGTAGGCATCACGT 60.321 55.000 6.12 0.00 35.10 4.49
2154 2681 1.076332 GGTGTAGGCATCACGTGAAC 58.924 55.000 24.13 17.33 36.76 3.18
2156 2683 0.599060 TGTAGGCATCACGTGAACGA 59.401 50.000 24.13 9.49 43.02 3.85
2171 2698 4.434725 CGTGAACGATTTTCTCTGATGTGG 60.435 45.833 0.00 0.00 43.02 4.17
2185 2712 5.875224 TCTGATGTGGTACTTTCCAATTCA 58.125 37.500 0.00 0.00 39.34 2.57
2224 2751 6.441088 ACCTCATCAAGTTCTACTTTCCTT 57.559 37.500 0.00 0.00 36.03 3.36
2226 2753 5.578727 CCTCATCAAGTTCTACTTTCCTTCG 59.421 44.000 0.00 0.00 36.03 3.79
2274 2801 6.553100 TCCTTCTCTAGAAAGGATCCATTCTC 59.447 42.308 30.35 13.52 35.84 2.87
2276 2803 6.723298 TCTCTAGAAAGGATCCATTCTCAC 57.277 41.667 30.35 6.75 35.84 3.51
2350 2877 7.756395 TTCTTTAGGGTATCCTATGTAGACG 57.244 40.000 1.57 0.00 44.51 4.18
2377 2904 1.207593 CGCTTTGGGTTCGAGCTTG 59.792 57.895 0.00 0.00 34.33 4.01
2379 2906 0.040067 GCTTTGGGTTCGAGCTTGTG 60.040 55.000 0.00 0.00 33.72 3.33
2414 2941 0.529773 GACATAAGCGTCGCATCCCA 60.530 55.000 21.09 0.00 0.00 4.37
2431 2964 4.339872 TCCCAAAACTACGACAGCTTAA 57.660 40.909 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.773117 GTCCTCGACGTCGGTGGC 62.773 72.222 35.05 24.17 40.29 5.01
15 16 3.210528 ATCGCCCTCGTCCTCGAC 61.211 66.667 0.00 0.00 41.35 4.20
16 17 3.209812 CATCGCCCTCGTCCTCGA 61.210 66.667 0.00 0.00 44.12 4.04
17 18 4.933064 GCATCGCCCTCGTCCTCG 62.933 72.222 0.00 0.00 36.96 4.63
18 19 4.593864 GGCATCGCCCTCGTCCTC 62.594 72.222 0.00 0.00 44.06 3.71
30 31 3.264897 CTACGCGGCAGTGGCATC 61.265 66.667 17.80 6.68 43.71 3.91
53 54 3.465403 CTGACCAGGAGGCCCTCG 61.465 72.222 4.29 0.00 42.02 4.63
63 64 1.202463 CGCATCTACTTCCCTGACCAG 60.202 57.143 0.00 0.00 0.00 4.00
64 65 0.824109 CGCATCTACTTCCCTGACCA 59.176 55.000 0.00 0.00 0.00 4.02
65 66 0.530870 GCGCATCTACTTCCCTGACC 60.531 60.000 0.30 0.00 0.00 4.02
66 67 0.175760 TGCGCATCTACTTCCCTGAC 59.824 55.000 5.66 0.00 0.00 3.51
67 68 1.123077 ATGCGCATCTACTTCCCTGA 58.877 50.000 19.28 0.00 0.00 3.86
68 69 1.224075 CATGCGCATCTACTTCCCTG 58.776 55.000 22.51 2.38 0.00 4.45
69 70 0.107456 CCATGCGCATCTACTTCCCT 59.893 55.000 22.51 0.00 0.00 4.20
70 71 1.510480 GCCATGCGCATCTACTTCCC 61.510 60.000 22.51 0.00 37.47 3.97
71 72 1.944778 GCCATGCGCATCTACTTCC 59.055 57.895 22.51 0.00 37.47 3.46
83 84 2.202650 GCAACATCCACGCCATGC 60.203 61.111 0.00 0.00 0.00 4.06
84 85 1.138036 CAGCAACATCCACGCCATG 59.862 57.895 0.00 0.00 0.00 3.66
85 86 2.048023 CCAGCAACATCCACGCCAT 61.048 57.895 0.00 0.00 0.00 4.40
86 87 2.672651 CCAGCAACATCCACGCCA 60.673 61.111 0.00 0.00 0.00 5.69
87 88 2.359850 TCCAGCAACATCCACGCC 60.360 61.111 0.00 0.00 0.00 5.68
88 89 2.690778 GGTCCAGCAACATCCACGC 61.691 63.158 0.00 0.00 0.00 5.34
89 90 1.003355 AGGTCCAGCAACATCCACG 60.003 57.895 0.00 0.00 0.00 4.94
90 91 1.589716 GCAGGTCCAGCAACATCCAC 61.590 60.000 0.49 0.00 0.00 4.02
91 92 1.303561 GCAGGTCCAGCAACATCCA 60.304 57.895 0.49 0.00 0.00 3.41
92 93 1.303561 TGCAGGTCCAGCAACATCC 60.304 57.895 6.46 0.00 39.39 3.51
93 94 0.321919 TCTGCAGGTCCAGCAACATC 60.322 55.000 15.13 0.00 42.17 3.06
94 95 0.322277 CTCTGCAGGTCCAGCAACAT 60.322 55.000 15.13 0.00 42.17 2.71
95 96 1.071987 CTCTGCAGGTCCAGCAACA 59.928 57.895 15.13 0.00 42.17 3.33
96 97 2.331132 GCTCTGCAGGTCCAGCAAC 61.331 63.158 15.13 0.00 42.17 4.17
97 98 2.033141 GCTCTGCAGGTCCAGCAA 59.967 61.111 15.13 1.32 42.17 3.91
98 99 4.025858 GGCTCTGCAGGTCCAGCA 62.026 66.667 22.31 8.86 40.19 4.41
135 136 3.735037 GATCGGCGACAACCTCCCC 62.735 68.421 13.76 0.00 0.00 4.81
136 137 2.202892 GATCGGCGACAACCTCCC 60.203 66.667 13.76 0.00 0.00 4.30
137 138 1.810030 GTGATCGGCGACAACCTCC 60.810 63.158 13.76 0.00 0.00 4.30
138 139 2.158959 CGTGATCGGCGACAACCTC 61.159 63.158 13.76 6.05 0.00 3.85
139 140 2.126071 CGTGATCGGCGACAACCT 60.126 61.111 13.76 0.00 0.00 3.50
140 141 3.849953 GCGTGATCGGCGACAACC 61.850 66.667 13.76 2.32 37.56 3.77
148 149 2.655364 CTGCTACGGCGTGATCGG 60.655 66.667 24.86 12.25 42.25 4.18
149 150 1.939785 GTCTGCTACGGCGTGATCG 60.940 63.158 24.86 9.35 42.25 3.69
150 151 3.999051 GTCTGCTACGGCGTGATC 58.001 61.111 24.86 11.73 42.25 2.92
159 160 2.426183 CGTGCACGACGTCTGCTAC 61.426 63.158 34.93 23.40 43.50 3.58
160 161 2.127003 CGTGCACGACGTCTGCTA 60.127 61.111 34.93 17.73 43.50 3.49
177 178 3.740397 TCACGCATGCAAGCAGCC 61.740 61.111 19.57 0.00 44.83 4.85
178 179 2.503375 GTCACGCATGCAAGCAGC 60.503 61.111 19.57 4.29 45.96 5.25
179 180 2.173951 TTCGTCACGCATGCAAGCAG 62.174 55.000 19.57 9.25 0.00 4.24
180 181 1.780025 TTTCGTCACGCATGCAAGCA 61.780 50.000 19.57 0.00 0.00 3.91
181 182 0.660005 TTTTCGTCACGCATGCAAGC 60.660 50.000 19.57 3.25 0.00 4.01
182 183 1.321016 CTTTTCGTCACGCATGCAAG 58.679 50.000 19.57 9.36 0.00 4.01
183 184 0.660005 GCTTTTCGTCACGCATGCAA 60.660 50.000 19.57 0.00 0.00 4.08
184 185 1.082169 GCTTTTCGTCACGCATGCA 60.082 52.632 19.57 0.00 0.00 3.96
185 186 0.790866 GAGCTTTTCGTCACGCATGC 60.791 55.000 7.91 7.91 0.00 4.06
186 187 0.517132 CGAGCTTTTCGTCACGCATG 60.517 55.000 0.00 0.00 44.27 4.06
187 188 1.781555 CGAGCTTTTCGTCACGCAT 59.218 52.632 0.00 0.00 44.27 4.73
188 189 3.230540 CGAGCTTTTCGTCACGCA 58.769 55.556 0.00 0.00 44.27 5.24
196 197 5.519722 TCTTTTGTTTGATCCGAGCTTTTC 58.480 37.500 0.00 0.00 0.00 2.29
197 198 5.514274 TCTTTTGTTTGATCCGAGCTTTT 57.486 34.783 0.00 0.00 0.00 2.27
198 199 5.514274 TTCTTTTGTTTGATCCGAGCTTT 57.486 34.783 0.00 0.00 0.00 3.51
199 200 5.514274 TTTCTTTTGTTTGATCCGAGCTT 57.486 34.783 0.00 0.00 0.00 3.74
200 201 5.617751 CGATTTCTTTTGTTTGATCCGAGCT 60.618 40.000 0.00 0.00 0.00 4.09
201 202 4.554973 CGATTTCTTTTGTTTGATCCGAGC 59.445 41.667 0.00 0.00 0.00 5.03
202 203 5.565259 CACGATTTCTTTTGTTTGATCCGAG 59.435 40.000 0.00 0.00 0.00 4.63
203 204 5.008217 ACACGATTTCTTTTGTTTGATCCGA 59.992 36.000 0.00 0.00 0.00 4.55
204 205 5.212194 ACACGATTTCTTTTGTTTGATCCG 58.788 37.500 0.00 0.00 0.00 4.18
205 206 7.149192 CGTTACACGATTTCTTTTGTTTGATCC 60.149 37.037 0.00 0.00 46.05 3.36
206 207 7.584847 TCGTTACACGATTTCTTTTGTTTGATC 59.415 33.333 0.00 0.00 46.73 2.92
207 208 7.411274 TCGTTACACGATTTCTTTTGTTTGAT 58.589 30.769 0.00 0.00 46.73 2.57
208 209 6.773080 TCGTTACACGATTTCTTTTGTTTGA 58.227 32.000 0.00 0.00 46.73 2.69
220 221 8.441608 CTAGTATGCTAGTATCGTTACACGATT 58.558 37.037 16.35 3.26 46.41 3.34
221 222 7.961855 CTAGTATGCTAGTATCGTTACACGAT 58.038 38.462 15.54 15.54 46.82 3.73
222 223 7.343614 CTAGTATGCTAGTATCGTTACACGA 57.656 40.000 9.52 0.75 45.28 4.35
223 224 6.014293 GCTAGTATGCTAGTATCGTTACACG 58.986 44.000 17.77 0.00 44.93 4.49
224 225 6.895898 TGCTAGTATGCTAGTATCGTTACAC 58.104 40.000 17.77 0.00 44.93 2.90
225 226 7.361799 CCATGCTAGTATGCTAGTATCGTTACA 60.362 40.741 16.48 5.89 44.93 2.41
226 227 6.967767 CCATGCTAGTATGCTAGTATCGTTAC 59.032 42.308 16.48 0.76 44.93 2.50
227 228 6.657966 ACCATGCTAGTATGCTAGTATCGTTA 59.342 38.462 16.48 0.00 44.93 3.18
228 229 5.477291 ACCATGCTAGTATGCTAGTATCGTT 59.523 40.000 16.48 3.79 44.93 3.85
229 230 5.010933 ACCATGCTAGTATGCTAGTATCGT 58.989 41.667 16.48 14.01 44.93 3.73
230 231 5.568685 ACCATGCTAGTATGCTAGTATCG 57.431 43.478 16.48 13.45 44.93 2.92
231 232 9.706691 TTTTAACCATGCTAGTATGCTAGTATC 57.293 33.333 16.48 3.31 44.93 2.24
232 233 9.712305 CTTTTAACCATGCTAGTATGCTAGTAT 57.288 33.333 17.77 15.96 46.73 2.12
233 234 7.656137 GCTTTTAACCATGCTAGTATGCTAGTA 59.344 37.037 17.77 14.43 44.93 1.82
234 235 6.483640 GCTTTTAACCATGCTAGTATGCTAGT 59.516 38.462 17.77 5.47 44.93 2.57
235 236 6.483307 TGCTTTTAACCATGCTAGTATGCTAG 59.517 38.462 14.78 13.07 45.68 3.42
236 237 6.353323 TGCTTTTAACCATGCTAGTATGCTA 58.647 36.000 14.78 6.12 0.00 3.49
237 238 5.192927 TGCTTTTAACCATGCTAGTATGCT 58.807 37.500 14.78 7.01 0.00 3.79
238 239 5.499139 TGCTTTTAACCATGCTAGTATGC 57.501 39.130 14.78 2.35 0.00 3.14
239 240 6.095440 ACCTTGCTTTTAACCATGCTAGTATG 59.905 38.462 13.42 13.42 0.00 2.39
240 241 6.187682 ACCTTGCTTTTAACCATGCTAGTAT 58.812 36.000 0.00 0.00 0.00 2.12
241 242 5.566469 ACCTTGCTTTTAACCATGCTAGTA 58.434 37.500 0.00 0.00 0.00 1.82
242 243 4.407365 ACCTTGCTTTTAACCATGCTAGT 58.593 39.130 0.00 0.00 0.00 2.57
243 244 6.374333 TCTTACCTTGCTTTTAACCATGCTAG 59.626 38.462 0.00 0.00 0.00 3.42
244 245 6.150474 GTCTTACCTTGCTTTTAACCATGCTA 59.850 38.462 0.00 0.00 0.00 3.49
245 246 5.048013 GTCTTACCTTGCTTTTAACCATGCT 60.048 40.000 0.00 0.00 0.00 3.79
246 247 5.048013 AGTCTTACCTTGCTTTTAACCATGC 60.048 40.000 0.00 0.00 0.00 4.06
247 248 6.575162 AGTCTTACCTTGCTTTTAACCATG 57.425 37.500 0.00 0.00 0.00 3.66
248 249 6.657966 GGTAGTCTTACCTTGCTTTTAACCAT 59.342 38.462 0.00 0.00 45.01 3.55
249 250 5.999600 GGTAGTCTTACCTTGCTTTTAACCA 59.000 40.000 0.00 0.00 45.01 3.67
250 251 6.492007 GGTAGTCTTACCTTGCTTTTAACC 57.508 41.667 0.00 0.00 45.01 2.85
263 264 6.295719 TGAGAAAATGGGAGGTAGTCTTAC 57.704 41.667 0.00 0.00 0.00 2.34
264 265 6.945636 TTGAGAAAATGGGAGGTAGTCTTA 57.054 37.500 0.00 0.00 0.00 2.10
265 266 5.843019 TTGAGAAAATGGGAGGTAGTCTT 57.157 39.130 0.00 0.00 0.00 3.01
266 267 5.280727 CCTTTGAGAAAATGGGAGGTAGTCT 60.281 44.000 0.00 0.00 0.00 3.24
267 268 4.944317 CCTTTGAGAAAATGGGAGGTAGTC 59.056 45.833 0.00 0.00 0.00 2.59
268 269 4.354087 ACCTTTGAGAAAATGGGAGGTAGT 59.646 41.667 0.00 0.00 34.46 2.73
269 270 4.923415 ACCTTTGAGAAAATGGGAGGTAG 58.077 43.478 0.00 0.00 34.46 3.18
270 271 5.333566 AACCTTTGAGAAAATGGGAGGTA 57.666 39.130 0.00 0.00 35.11 3.08
271 272 3.903530 ACCTTTGAGAAAATGGGAGGT 57.096 42.857 0.00 0.00 0.00 3.85
272 273 4.588528 TCAAACCTTTGAGAAAATGGGAGG 59.411 41.667 0.00 0.00 41.88 4.30
273 274 5.789643 TCAAACCTTTGAGAAAATGGGAG 57.210 39.130 0.00 0.00 41.88 4.30
274 275 5.660864 AGTTCAAACCTTTGAGAAAATGGGA 59.339 36.000 0.96 0.00 46.68 4.37
275 276 5.917462 AGTTCAAACCTTTGAGAAAATGGG 58.083 37.500 0.96 0.00 46.68 4.00
276 277 5.687285 CGAGTTCAAACCTTTGAGAAAATGG 59.313 40.000 0.96 0.00 46.68 3.16
277 278 6.494842 TCGAGTTCAAACCTTTGAGAAAATG 58.505 36.000 0.96 0.00 46.68 2.32
278 279 6.693315 TCGAGTTCAAACCTTTGAGAAAAT 57.307 33.333 0.96 0.00 46.68 1.82
279 280 6.317642 TGATCGAGTTCAAACCTTTGAGAAAA 59.682 34.615 0.96 0.00 46.68 2.29
280 281 5.820423 TGATCGAGTTCAAACCTTTGAGAAA 59.180 36.000 0.96 0.00 46.68 2.52
281 282 5.364778 TGATCGAGTTCAAACCTTTGAGAA 58.635 37.500 0.96 0.00 46.68 2.87
282 283 4.956085 TGATCGAGTTCAAACCTTTGAGA 58.044 39.130 0.96 0.00 46.68 3.27
283 284 4.377841 GCTGATCGAGTTCAAACCTTTGAG 60.378 45.833 0.96 0.00 46.68 3.02
284 285 3.498397 GCTGATCGAGTTCAAACCTTTGA 59.502 43.478 0.00 0.00 44.78 2.69
285 286 3.499918 AGCTGATCGAGTTCAAACCTTTG 59.500 43.478 0.00 0.00 39.48 2.77
286 287 3.744660 AGCTGATCGAGTTCAAACCTTT 58.255 40.909 0.00 0.00 0.00 3.11
287 288 3.330267 GAGCTGATCGAGTTCAAACCTT 58.670 45.455 0.00 0.00 32.27 3.50
288 289 2.966050 GAGCTGATCGAGTTCAAACCT 58.034 47.619 0.00 0.00 32.27 3.50
297 298 9.931194 GATCATTGATCTACCGAGCTGATCGAG 62.931 48.148 17.81 7.29 43.38 4.04
298 299 8.272190 GATCATTGATCTACCGAGCTGATCGA 62.272 46.154 17.81 0.00 43.38 3.59
299 300 6.180174 GATCATTGATCTACCGAGCTGATCG 61.180 48.000 17.61 8.56 41.97 3.69
300 301 4.511617 TCATTGATCTACCGAGCTGATC 57.488 45.455 0.00 0.00 0.00 2.92
301 302 4.771577 AGATCATTGATCTACCGAGCTGAT 59.228 41.667 24.40 0.00 46.15 2.90
302 303 4.022503 CAGATCATTGATCTACCGAGCTGA 60.023 45.833 24.98 0.00 46.25 4.26
303 304 4.236147 CAGATCATTGATCTACCGAGCTG 58.764 47.826 24.98 10.41 46.25 4.24
304 305 3.894427 ACAGATCATTGATCTACCGAGCT 59.106 43.478 24.98 2.41 46.25 4.09
305 306 4.250116 ACAGATCATTGATCTACCGAGC 57.750 45.455 24.98 0.00 46.25 5.03
306 307 5.804473 GCATACAGATCATTGATCTACCGAG 59.196 44.000 24.98 16.19 46.25 4.63
307 308 5.478332 AGCATACAGATCATTGATCTACCGA 59.522 40.000 24.98 13.00 46.25 4.69
308 309 5.718146 AGCATACAGATCATTGATCTACCG 58.282 41.667 24.98 16.80 46.25 4.02
309 310 6.309980 CGAAGCATACAGATCATTGATCTACC 59.690 42.308 24.98 13.27 46.25 3.18
310 311 7.275697 CGAAGCATACAGATCATTGATCTAC 57.724 40.000 24.98 13.91 46.25 2.59
330 331 1.153469 GCAGGAGGGAAGAGCGAAG 60.153 63.158 0.00 0.00 0.00 3.79
331 332 2.982130 GCAGGAGGGAAGAGCGAA 59.018 61.111 0.00 0.00 0.00 4.70
334 335 0.753262 TTATCGCAGGAGGGAAGAGC 59.247 55.000 0.00 0.00 40.35 4.09
335 336 2.311463 TCTTATCGCAGGAGGGAAGAG 58.689 52.381 0.00 0.00 40.35 2.85
336 337 2.454336 TCTTATCGCAGGAGGGAAGA 57.546 50.000 0.00 0.00 40.35 2.87
337 338 3.760580 ATTCTTATCGCAGGAGGGAAG 57.239 47.619 0.00 0.00 40.35 3.46
338 339 4.080582 TGAAATTCTTATCGCAGGAGGGAA 60.081 41.667 0.00 0.00 40.35 3.97
339 340 3.454447 TGAAATTCTTATCGCAGGAGGGA 59.546 43.478 0.00 0.00 41.28 4.20
340 341 3.808728 TGAAATTCTTATCGCAGGAGGG 58.191 45.455 0.00 0.00 0.00 4.30
341 342 6.204359 CAATTGAAATTCTTATCGCAGGAGG 58.796 40.000 0.00 0.00 0.00 4.30
342 343 5.684626 GCAATTGAAATTCTTATCGCAGGAG 59.315 40.000 10.34 0.00 0.00 3.69
343 344 5.357878 AGCAATTGAAATTCTTATCGCAGGA 59.642 36.000 10.34 0.00 0.00 3.86
344 345 5.585390 AGCAATTGAAATTCTTATCGCAGG 58.415 37.500 10.34 0.00 0.00 4.85
345 346 6.359087 GCTAGCAATTGAAATTCTTATCGCAG 59.641 38.462 10.63 0.00 0.00 5.18
346 347 6.183360 TGCTAGCAATTGAAATTCTTATCGCA 60.183 34.615 16.84 1.74 0.00 5.10
347 348 6.201517 TGCTAGCAATTGAAATTCTTATCGC 58.798 36.000 16.84 0.00 0.00 4.58
348 349 8.288208 AGATGCTAGCAATTGAAATTCTTATCG 58.712 33.333 23.54 0.00 0.00 2.92
351 352 8.551205 CGTAGATGCTAGCAATTGAAATTCTTA 58.449 33.333 23.54 4.08 0.00 2.10
352 353 7.412853 CGTAGATGCTAGCAATTGAAATTCTT 58.587 34.615 23.54 0.00 0.00 2.52
353 354 6.017605 CCGTAGATGCTAGCAATTGAAATTCT 60.018 38.462 23.54 18.61 0.00 2.40
354 355 6.138761 CCGTAGATGCTAGCAATTGAAATTC 58.861 40.000 23.54 12.00 0.00 2.17
355 356 5.590259 ACCGTAGATGCTAGCAATTGAAATT 59.410 36.000 23.54 1.41 0.00 1.82
356 357 5.126067 ACCGTAGATGCTAGCAATTGAAAT 58.874 37.500 23.54 2.30 0.00 2.17
357 358 4.513442 ACCGTAGATGCTAGCAATTGAAA 58.487 39.130 23.54 1.40 0.00 2.69
358 359 4.137116 ACCGTAGATGCTAGCAATTGAA 57.863 40.909 23.54 2.93 0.00 2.69
359 360 3.819564 ACCGTAGATGCTAGCAATTGA 57.180 42.857 23.54 4.62 0.00 2.57
360 361 5.984233 TTAACCGTAGATGCTAGCAATTG 57.016 39.130 23.54 9.92 0.00 2.32
361 362 8.848474 ATATTTAACCGTAGATGCTAGCAATT 57.152 30.769 23.54 15.12 0.00 2.32
362 363 9.367444 GTATATTTAACCGTAGATGCTAGCAAT 57.633 33.333 23.54 15.94 0.00 3.56
363 364 8.361889 TGTATATTTAACCGTAGATGCTAGCAA 58.638 33.333 23.54 1.65 0.00 3.91
364 365 7.888424 TGTATATTTAACCGTAGATGCTAGCA 58.112 34.615 21.85 21.85 0.00 3.49
365 366 8.027771 ACTGTATATTTAACCGTAGATGCTAGC 58.972 37.037 8.10 8.10 0.00 3.42
366 367 9.343103 CACTGTATATTTAACCGTAGATGCTAG 57.657 37.037 0.00 0.00 0.00 3.42
367 368 9.070179 TCACTGTATATTTAACCGTAGATGCTA 57.930 33.333 0.00 0.00 0.00 3.49
368 369 7.948357 TCACTGTATATTTAACCGTAGATGCT 58.052 34.615 0.00 0.00 0.00 3.79
369 370 8.080417 TCTCACTGTATATTTAACCGTAGATGC 58.920 37.037 0.00 0.00 0.00 3.91
370 371 9.613957 CTCTCACTGTATATTTAACCGTAGATG 57.386 37.037 0.00 0.00 0.00 2.90
371 372 8.794553 CCTCTCACTGTATATTTAACCGTAGAT 58.205 37.037 0.00 0.00 0.00 1.98
372 373 7.776969 ACCTCTCACTGTATATTTAACCGTAGA 59.223 37.037 0.00 0.00 0.00 2.59
373 374 7.938715 ACCTCTCACTGTATATTTAACCGTAG 58.061 38.462 0.00 0.00 0.00 3.51
374 375 7.557358 TGACCTCTCACTGTATATTTAACCGTA 59.443 37.037 0.00 0.00 0.00 4.02
375 376 6.379133 TGACCTCTCACTGTATATTTAACCGT 59.621 38.462 0.00 0.00 0.00 4.83
376 377 6.802608 TGACCTCTCACTGTATATTTAACCG 58.197 40.000 0.00 0.00 0.00 4.44
377 378 9.614792 ATTTGACCTCTCACTGTATATTTAACC 57.385 33.333 0.00 0.00 0.00 2.85
381 382 8.762645 TCTCATTTGACCTCTCACTGTATATTT 58.237 33.333 0.00 0.00 0.00 1.40
382 383 8.200792 GTCTCATTTGACCTCTCACTGTATATT 58.799 37.037 0.00 0.00 0.00 1.28
383 384 7.469318 CGTCTCATTTGACCTCTCACTGTATAT 60.469 40.741 0.00 0.00 33.70 0.86
384 385 6.183360 CGTCTCATTTGACCTCTCACTGTATA 60.183 42.308 0.00 0.00 33.70 1.47
385 386 5.393569 CGTCTCATTTGACCTCTCACTGTAT 60.394 44.000 0.00 0.00 33.70 2.29
386 387 4.082733 CGTCTCATTTGACCTCTCACTGTA 60.083 45.833 0.00 0.00 33.70 2.74
387 388 3.305676 CGTCTCATTTGACCTCTCACTGT 60.306 47.826 0.00 0.00 33.70 3.55
388 389 3.249091 CGTCTCATTTGACCTCTCACTG 58.751 50.000 0.00 0.00 33.70 3.66
389 390 2.353208 GCGTCTCATTTGACCTCTCACT 60.353 50.000 0.00 0.00 33.70 3.41
390 391 1.996191 GCGTCTCATTTGACCTCTCAC 59.004 52.381 0.00 0.00 33.70 3.51
391 392 1.618343 TGCGTCTCATTTGACCTCTCA 59.382 47.619 0.00 0.00 33.70 3.27
392 393 1.996191 GTGCGTCTCATTTGACCTCTC 59.004 52.381 0.00 0.00 33.70 3.20
393 394 1.670087 CGTGCGTCTCATTTGACCTCT 60.670 52.381 0.00 0.00 33.70 3.69
394 395 0.716108 CGTGCGTCTCATTTGACCTC 59.284 55.000 0.00 0.00 33.70 3.85
395 396 1.291877 GCGTGCGTCTCATTTGACCT 61.292 55.000 0.00 0.00 33.70 3.85
396 397 1.132640 GCGTGCGTCTCATTTGACC 59.867 57.895 0.00 0.00 33.70 4.02
397 398 1.132640 GGCGTGCGTCTCATTTGAC 59.867 57.895 0.00 0.00 0.00 3.18
398 399 2.032634 GGGCGTGCGTCTCATTTGA 61.033 57.895 0.00 0.00 0.00 2.69
399 400 2.480555 GGGCGTGCGTCTCATTTG 59.519 61.111 0.00 0.00 0.00 2.32
400 401 2.746277 GGGGCGTGCGTCTCATTT 60.746 61.111 0.00 0.00 0.00 2.32
401 402 3.254024 AAGGGGCGTGCGTCTCATT 62.254 57.895 0.00 0.00 0.00 2.57
402 403 3.665675 GAAGGGGCGTGCGTCTCAT 62.666 63.158 0.00 0.00 0.00 2.90
403 404 4.373116 GAAGGGGCGTGCGTCTCA 62.373 66.667 0.00 0.00 0.00 3.27
404 405 4.373116 TGAAGGGGCGTGCGTCTC 62.373 66.667 0.00 0.00 0.00 3.36
405 406 4.379243 CTGAAGGGGCGTGCGTCT 62.379 66.667 0.00 0.00 0.00 4.18
406 407 4.681978 ACTGAAGGGGCGTGCGTC 62.682 66.667 0.00 0.00 0.00 5.19
407 408 4.250305 AACTGAAGGGGCGTGCGT 62.250 61.111 0.00 0.00 0.00 5.24
408 409 3.423154 GAACTGAAGGGGCGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
409 410 2.281484 TGAACTGAAGGGGCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
410 411 1.966451 GGTGAACTGAAGGGGCGTG 60.966 63.158 0.00 0.00 0.00 5.34
411 412 1.705997 AAGGTGAACTGAAGGGGCGT 61.706 55.000 0.00 0.00 0.00 5.68
412 413 0.955919 GAAGGTGAACTGAAGGGGCG 60.956 60.000 0.00 0.00 0.00 6.13
413 414 0.609406 GGAAGGTGAACTGAAGGGGC 60.609 60.000 0.00 0.00 0.00 5.80
414 415 1.068121 AGGAAGGTGAACTGAAGGGG 58.932 55.000 0.00 0.00 0.00 4.79
415 416 1.699634 TCAGGAAGGTGAACTGAAGGG 59.300 52.381 0.00 0.00 38.22 3.95
416 417 3.492102 TTCAGGAAGGTGAACTGAAGG 57.508 47.619 0.00 0.00 43.90 3.46
423 424 7.396055 CCCATTAATTAAGTTCAGGAAGGTGAA 59.604 37.037 3.94 0.00 33.95 3.18
424 425 6.889722 CCCATTAATTAAGTTCAGGAAGGTGA 59.110 38.462 3.94 0.00 0.00 4.02
425 426 6.096846 CCCCATTAATTAAGTTCAGGAAGGTG 59.903 42.308 3.94 0.00 0.00 4.00
426 427 6.194967 CCCCATTAATTAAGTTCAGGAAGGT 58.805 40.000 3.94 0.00 0.00 3.50
427 428 5.069119 GCCCCATTAATTAAGTTCAGGAAGG 59.931 44.000 3.94 1.02 0.00 3.46
428 429 5.656416 TGCCCCATTAATTAAGTTCAGGAAG 59.344 40.000 3.94 0.00 0.00 3.46
429 430 5.420739 GTGCCCCATTAATTAAGTTCAGGAA 59.579 40.000 3.94 0.00 0.00 3.36
430 431 4.953579 GTGCCCCATTAATTAAGTTCAGGA 59.046 41.667 3.94 0.00 0.00 3.86
431 432 4.956075 AGTGCCCCATTAATTAAGTTCAGG 59.044 41.667 3.94 1.92 0.00 3.86
432 433 6.530019 AAGTGCCCCATTAATTAAGTTCAG 57.470 37.500 3.94 0.00 0.00 3.02
433 434 5.124776 CGAAGTGCCCCATTAATTAAGTTCA 59.875 40.000 3.94 0.00 0.00 3.18
434 435 5.124936 ACGAAGTGCCCCATTAATTAAGTTC 59.875 40.000 3.94 0.00 42.51 3.01
435 436 5.014202 ACGAAGTGCCCCATTAATTAAGTT 58.986 37.500 3.94 0.00 42.51 2.66
436 437 4.595986 ACGAAGTGCCCCATTAATTAAGT 58.404 39.130 3.94 0.00 42.51 2.24
452 453 7.093421 ACTTAATTAAGCCTAGGAAGACGAAGT 60.093 37.037 22.45 9.86 39.59 3.01
453 454 7.266400 ACTTAATTAAGCCTAGGAAGACGAAG 58.734 38.462 22.45 9.24 36.79 3.79
454 455 7.179076 ACTTAATTAAGCCTAGGAAGACGAA 57.821 36.000 22.45 0.00 36.79 3.85
455 456 6.786967 ACTTAATTAAGCCTAGGAAGACGA 57.213 37.500 22.45 0.00 36.79 4.20
456 457 6.479331 GGAACTTAATTAAGCCTAGGAAGACG 59.521 42.308 22.45 0.00 36.79 4.18
457 458 7.496263 CAGGAACTTAATTAAGCCTAGGAAGAC 59.504 40.741 22.45 5.48 34.60 3.01
458 459 7.182206 ACAGGAACTTAATTAAGCCTAGGAAGA 59.818 37.037 22.45 0.00 34.60 2.87
459 460 7.339482 ACAGGAACTTAATTAAGCCTAGGAAG 58.661 38.462 22.45 7.78 34.60 3.46
460 461 7.266905 ACAGGAACTTAATTAAGCCTAGGAA 57.733 36.000 22.45 0.00 34.60 3.36
461 462 6.886178 ACAGGAACTTAATTAAGCCTAGGA 57.114 37.500 22.45 0.00 34.60 2.94
462 463 9.628500 AATAACAGGAACTTAATTAAGCCTAGG 57.372 33.333 22.45 3.67 34.60 3.02
464 465 9.403583 CCAATAACAGGAACTTAATTAAGCCTA 57.596 33.333 22.45 9.37 34.60 3.93
465 466 7.342026 CCCAATAACAGGAACTTAATTAAGCCT 59.658 37.037 22.45 18.43 34.60 4.58
466 467 7.489160 CCCAATAACAGGAACTTAATTAAGCC 58.511 38.462 22.45 16.73 34.60 4.35
467 468 6.978659 GCCCAATAACAGGAACTTAATTAAGC 59.021 38.462 22.45 9.23 34.60 3.09
468 469 7.066525 TCGCCCAATAACAGGAACTTAATTAAG 59.933 37.037 21.21 21.21 34.60 1.85
469 470 6.885376 TCGCCCAATAACAGGAACTTAATTAA 59.115 34.615 0.00 0.00 34.60 1.40
470 471 6.416415 TCGCCCAATAACAGGAACTTAATTA 58.584 36.000 0.00 0.00 34.60 1.40
471 472 5.258051 TCGCCCAATAACAGGAACTTAATT 58.742 37.500 0.00 0.00 34.60 1.40
472 473 4.850680 TCGCCCAATAACAGGAACTTAAT 58.149 39.130 0.00 0.00 34.60 1.40
473 474 4.289238 TCGCCCAATAACAGGAACTTAA 57.711 40.909 0.00 0.00 34.60 1.85
474 475 3.985019 TCGCCCAATAACAGGAACTTA 57.015 42.857 0.00 0.00 34.60 2.24
475 476 2.871096 TCGCCCAATAACAGGAACTT 57.129 45.000 0.00 0.00 34.60 2.66
476 477 2.741878 CGATCGCCCAATAACAGGAACT 60.742 50.000 0.26 0.00 43.88 3.01
477 478 1.597663 CGATCGCCCAATAACAGGAAC 59.402 52.381 0.26 0.00 0.00 3.62
478 479 1.483004 TCGATCGCCCAATAACAGGAA 59.517 47.619 11.09 0.00 0.00 3.36
479 480 1.116308 TCGATCGCCCAATAACAGGA 58.884 50.000 11.09 0.00 0.00 3.86
480 481 2.069273 GATCGATCGCCCAATAACAGG 58.931 52.381 11.09 0.00 0.00 4.00
481 482 1.721389 CGATCGATCGCCCAATAACAG 59.279 52.381 32.34 4.59 43.84 3.16
482 483 1.778334 CGATCGATCGCCCAATAACA 58.222 50.000 32.34 0.00 43.84 2.41
493 494 6.345093 CGAATAAAAAGGTGAGACGATCGATC 60.345 42.308 24.34 18.77 0.00 3.69
494 495 5.459107 CGAATAAAAAGGTGAGACGATCGAT 59.541 40.000 24.34 9.93 0.00 3.59
495 496 4.796830 CGAATAAAAAGGTGAGACGATCGA 59.203 41.667 24.34 0.00 0.00 3.59
496 497 4.796830 TCGAATAAAAAGGTGAGACGATCG 59.203 41.667 14.88 14.88 0.00 3.69
497 498 6.642683 TTCGAATAAAAAGGTGAGACGATC 57.357 37.500 0.00 0.00 0.00 3.69
498 499 7.429636 TTTTCGAATAAAAAGGTGAGACGAT 57.570 32.000 0.00 0.00 0.00 3.73
499 500 6.847956 TTTTCGAATAAAAAGGTGAGACGA 57.152 33.333 0.00 0.00 0.00 4.20
500 501 7.801315 TCAATTTTCGAATAAAAAGGTGAGACG 59.199 33.333 0.00 0.00 32.04 4.18
501 502 9.458374 TTCAATTTTCGAATAAAAAGGTGAGAC 57.542 29.630 0.00 0.00 32.34 3.36
504 505 9.123709 CGATTCAATTTTCGAATAAAAAGGTGA 57.876 29.630 0.00 0.00 37.55 4.02
505 506 9.123709 TCGATTCAATTTTCGAATAAAAAGGTG 57.876 29.630 0.00 0.00 41.06 4.00
506 507 9.341899 CTCGATTCAATTTTCGAATAAAAAGGT 57.658 29.630 0.00 0.00 43.14 3.50
507 508 9.341899 ACTCGATTCAATTTTCGAATAAAAAGG 57.658 29.630 0.00 0.00 43.14 3.11
509 510 9.672086 ACACTCGATTCAATTTTCGAATAAAAA 57.328 25.926 0.00 0.00 43.14 1.94
510 511 9.672086 AACACTCGATTCAATTTTCGAATAAAA 57.328 25.926 0.00 0.00 43.14 1.52
511 512 9.325150 GAACACTCGATTCAATTTTCGAATAAA 57.675 29.630 0.00 0.00 43.14 1.40
512 513 8.499967 TGAACACTCGATTCAATTTTCGAATAA 58.500 29.630 0.00 0.00 43.14 1.40
513 514 7.955324 GTGAACACTCGATTCAATTTTCGAATA 59.045 33.333 0.00 0.00 43.14 1.75
514 515 6.797033 GTGAACACTCGATTCAATTTTCGAAT 59.203 34.615 0.00 0.00 43.14 3.34
515 516 6.133392 GTGAACACTCGATTCAATTTTCGAA 58.867 36.000 1.64 0.00 43.14 3.71
516 517 5.333798 GGTGAACACTCGATTCAATTTTCGA 60.334 40.000 1.64 5.19 41.70 3.71
517 518 4.846137 GGTGAACACTCGATTCAATTTTCG 59.154 41.667 1.64 0.00 37.80 3.46
518 519 4.846137 CGGTGAACACTCGATTCAATTTTC 59.154 41.667 1.64 0.00 37.80 2.29
519 520 4.320202 CCGGTGAACACTCGATTCAATTTT 60.320 41.667 13.93 0.00 37.80 1.82
520 521 3.188460 CCGGTGAACACTCGATTCAATTT 59.812 43.478 13.93 0.00 37.80 1.82
521 522 2.742053 CCGGTGAACACTCGATTCAATT 59.258 45.455 13.93 0.00 37.80 2.32
522 523 2.028476 TCCGGTGAACACTCGATTCAAT 60.028 45.455 0.00 0.00 37.80 2.57
523 524 1.341852 TCCGGTGAACACTCGATTCAA 59.658 47.619 0.00 0.00 37.80 2.69
524 525 0.963225 TCCGGTGAACACTCGATTCA 59.037 50.000 0.00 0.00 33.68 2.57
525 526 1.630148 CTCCGGTGAACACTCGATTC 58.370 55.000 0.00 0.00 0.00 2.52
526 527 0.389948 GCTCCGGTGAACACTCGATT 60.390 55.000 7.92 0.00 0.00 3.34
527 528 1.215647 GCTCCGGTGAACACTCGAT 59.784 57.895 7.92 0.00 0.00 3.59
528 529 1.532604 ATGCTCCGGTGAACACTCGA 61.533 55.000 7.92 0.00 0.00 4.04
529 530 0.172578 TATGCTCCGGTGAACACTCG 59.827 55.000 7.92 6.83 0.00 4.18
530 531 1.927895 CTATGCTCCGGTGAACACTC 58.072 55.000 7.92 0.00 0.00 3.51
531 532 0.108138 GCTATGCTCCGGTGAACACT 60.108 55.000 7.92 0.00 0.00 3.55
532 533 0.108138 AGCTATGCTCCGGTGAACAC 60.108 55.000 7.92 0.00 30.62 3.32
533 534 0.108186 CAGCTATGCTCCGGTGAACA 60.108 55.000 7.92 0.00 36.40 3.18
534 535 2.682893 CAGCTATGCTCCGGTGAAC 58.317 57.895 7.92 0.00 36.40 3.18
550 551 4.662961 TCGTCCGGTGCACTGCAG 62.663 66.667 20.76 13.48 40.08 4.41
551 552 4.228567 TTCGTCCGGTGCACTGCA 62.229 61.111 20.76 1.50 35.60 4.41
552 553 3.414700 CTTCGTCCGGTGCACTGC 61.415 66.667 20.76 6.69 0.00 4.40
553 554 2.022129 GACTTCGTCCGGTGCACTG 61.022 63.158 19.25 19.25 0.00 3.66
554 555 2.338984 GACTTCGTCCGGTGCACT 59.661 61.111 17.98 0.00 0.00 4.40
555 556 3.103911 CGACTTCGTCCGGTGCAC 61.104 66.667 8.80 8.80 34.11 4.57
556 557 2.742710 CTTCGACTTCGTCCGGTGCA 62.743 60.000 0.00 0.00 40.80 4.57
557 558 2.049802 TTCGACTTCGTCCGGTGC 60.050 61.111 0.00 0.00 40.80 5.01
558 559 0.039798 TTCTTCGACTTCGTCCGGTG 60.040 55.000 0.00 0.00 40.80 4.94
559 560 0.039708 GTTCTTCGACTTCGTCCGGT 60.040 55.000 0.00 0.00 40.80 5.28
560 561 0.731855 GGTTCTTCGACTTCGTCCGG 60.732 60.000 0.00 0.00 40.80 5.14
561 562 1.063951 CGGTTCTTCGACTTCGTCCG 61.064 60.000 0.00 3.74 40.80 4.79
562 563 1.342796 GCGGTTCTTCGACTTCGTCC 61.343 60.000 0.00 0.00 40.80 4.79
563 564 1.662845 CGCGGTTCTTCGACTTCGTC 61.663 60.000 0.00 0.00 40.80 4.20
564 565 1.728426 CGCGGTTCTTCGACTTCGT 60.728 57.895 0.00 0.00 40.80 3.85
565 566 3.055905 GCGCGGTTCTTCGACTTCG 62.056 63.158 8.83 0.00 41.45 3.79
566 567 2.727684 GGCGCGGTTCTTCGACTTC 61.728 63.158 8.83 0.00 0.00 3.01
567 568 2.737376 GGCGCGGTTCTTCGACTT 60.737 61.111 8.83 0.00 0.00 3.01
568 569 3.986006 TGGCGCGGTTCTTCGACT 61.986 61.111 8.83 0.00 34.25 4.18
569 570 3.774702 GTGGCGCGGTTCTTCGAC 61.775 66.667 8.83 0.00 0.00 4.20
572 573 2.746277 ATGGTGGCGCGGTTCTTC 60.746 61.111 8.83 0.00 0.00 2.87
573 574 3.055719 CATGGTGGCGCGGTTCTT 61.056 61.111 8.83 0.00 0.00 2.52
574 575 4.329545 ACATGGTGGCGCGGTTCT 62.330 61.111 8.83 0.00 0.00 3.01
575 576 3.799755 GACATGGTGGCGCGGTTC 61.800 66.667 8.83 0.00 0.00 3.62
580 581 4.760047 AGTCGGACATGGTGGCGC 62.760 66.667 11.27 0.00 0.00 6.53
581 582 2.815211 CAGTCGGACATGGTGGCG 60.815 66.667 11.27 0.00 0.00 5.69
582 583 1.741770 GACAGTCGGACATGGTGGC 60.742 63.158 11.27 0.00 0.00 5.01
583 584 1.079127 GGACAGTCGGACATGGTGG 60.079 63.158 11.27 0.00 0.00 4.61
584 585 0.321671 AAGGACAGTCGGACATGGTG 59.678 55.000 11.27 2.24 0.00 4.17
585 586 1.056660 AAAGGACAGTCGGACATGGT 58.943 50.000 11.27 5.41 0.00 3.55
586 587 1.442769 CAAAGGACAGTCGGACATGG 58.557 55.000 11.27 2.06 0.00 3.66
587 588 0.798776 GCAAAGGACAGTCGGACATG 59.201 55.000 11.27 8.26 0.00 3.21
588 589 0.396435 TGCAAAGGACAGTCGGACAT 59.604 50.000 11.27 0.00 0.00 3.06
589 590 0.396435 ATGCAAAGGACAGTCGGACA 59.604 50.000 11.27 0.00 0.00 4.02
590 591 0.798776 CATGCAAAGGACAGTCGGAC 59.201 55.000 0.00 0.00 0.00 4.79
591 592 0.321564 CCATGCAAAGGACAGTCGGA 60.322 55.000 2.49 0.00 0.00 4.55
592 593 1.308069 CCCATGCAAAGGACAGTCGG 61.308 60.000 9.95 0.00 0.00 4.79
593 594 0.606401 ACCCATGCAAAGGACAGTCG 60.606 55.000 12.08 0.00 0.00 4.18
594 595 1.620822 AACCCATGCAAAGGACAGTC 58.379 50.000 12.08 0.00 0.00 3.51
595 596 2.969821 TAACCCATGCAAAGGACAGT 57.030 45.000 12.08 0.00 0.00 3.55
596 597 3.181497 CGATTAACCCATGCAAAGGACAG 60.181 47.826 12.08 0.00 0.00 3.51
597 598 2.752354 CGATTAACCCATGCAAAGGACA 59.248 45.455 12.08 0.00 0.00 4.02
598 599 2.479560 GCGATTAACCCATGCAAAGGAC 60.480 50.000 12.08 0.00 0.00 3.85
599 600 1.748493 GCGATTAACCCATGCAAAGGA 59.252 47.619 12.08 0.00 0.00 3.36
600 601 1.750778 AGCGATTAACCCATGCAAAGG 59.249 47.619 3.89 3.89 0.00 3.11
601 602 2.223572 GGAGCGATTAACCCATGCAAAG 60.224 50.000 0.00 0.00 0.00 2.77
602 603 1.748493 GGAGCGATTAACCCATGCAAA 59.252 47.619 0.00 0.00 0.00 3.68
603 604 1.064758 AGGAGCGATTAACCCATGCAA 60.065 47.619 0.00 0.00 0.00 4.08
604 605 0.546122 AGGAGCGATTAACCCATGCA 59.454 50.000 0.00 0.00 0.00 3.96
605 606 2.543777 TAGGAGCGATTAACCCATGC 57.456 50.000 0.00 0.00 0.00 4.06
686 687 6.112058 GCTAGAGTTGGATTCAAAGATGTCT 58.888 40.000 0.00 0.00 34.28 3.41
699 700 0.389391 GCATAGGCGCTAGAGTTGGA 59.611 55.000 7.64 0.00 0.00 3.53
711 712 2.111999 TAGGGCCATGTCGCATAGGC 62.112 60.000 6.18 16.80 46.28 3.93
763 766 3.119065 TCCCGCGTGTCATTACTCAAATA 60.119 43.478 4.92 0.00 0.00 1.40
772 775 1.959226 GTGTGTCCCGCGTGTCATT 60.959 57.895 4.92 0.00 0.00 2.57
787 794 4.922206 ACATTGATGTGGATAACTGGTGT 58.078 39.130 0.00 0.00 40.03 4.16
812 819 3.347216 GCATGTGAGTAAGTGATGGGTT 58.653 45.455 0.00 0.00 0.00 4.11
891 907 4.704833 GCTCGTGGCTGGCTTGGA 62.705 66.667 2.00 0.00 38.06 3.53
989 1087 2.005960 GCTAGACATCACTCGCCGGT 62.006 60.000 1.90 0.00 0.00 5.28
1045 1158 1.968493 TCTTCTTAACGGCACTGGACT 59.032 47.619 0.00 0.00 0.00 3.85
1059 1172 0.753111 GGCAATCGGGGCATCTTCTT 60.753 55.000 0.00 0.00 0.00 2.52
1061 1174 2.196245 GGGCAATCGGGGCATCTTC 61.196 63.158 0.00 0.00 34.52 2.87
1243 1366 3.628257 CCCTAGATCCACTGCCCAAATTT 60.628 47.826 0.00 0.00 0.00 1.82
1428 1593 3.195182 CAGCACTATCCATCATCGGATCT 59.805 47.826 0.00 0.00 42.36 2.75
1443 1608 4.400529 TTCACACTTCAGTTCAGCACTA 57.599 40.909 0.00 0.00 32.76 2.74
1482 1647 5.972107 AATTGATCAGCTGCTTTAGTTGT 57.028 34.783 9.47 0.00 38.61 3.32
1501 1666 7.966246 TCATATTTGCTTGTTGCTTCAAATT 57.034 28.000 4.68 0.00 43.37 1.82
1512 1678 3.634504 TCCAGCCATCATATTTGCTTGT 58.365 40.909 0.00 0.00 30.08 3.16
1539 1705 5.357878 ACCCATAGCAATGACACAACAATAG 59.642 40.000 0.00 0.00 34.84 1.73
1666 1850 3.508793 TCCCTGGACTAACTGAAACTACG 59.491 47.826 0.00 0.00 0.00 3.51
1763 1969 6.609616 GGGGAACAAATAATCCATGGACTAAA 59.390 38.462 18.99 2.87 37.46 1.85
1783 1989 6.612456 AGATGCATTTTATTCATCAAGGGGAA 59.388 34.615 0.00 0.00 39.12 3.97
1789 1995 7.828712 TGTGACAGATGCATTTTATTCATCAA 58.171 30.769 0.00 0.00 39.12 2.57
1825 2348 5.889853 TCTGATAACTAAAGAACGGGCTAGA 59.110 40.000 0.00 0.00 0.00 2.43
1830 2353 6.037098 CACTCTCTGATAACTAAAGAACGGG 58.963 44.000 0.00 0.00 0.00 5.28
1839 2362 3.763897 TGCACTGCACTCTCTGATAACTA 59.236 43.478 0.00 0.00 31.71 2.24
1845 2368 0.602060 CTCTGCACTGCACTCTCTGA 59.398 55.000 0.00 0.00 33.79 3.27
1880 2403 0.466555 GCCCACGGCCCAATAATGTA 60.467 55.000 0.00 0.00 44.06 2.29
1921 2447 3.147629 GAGGCCATGAAATCTGAGATGG 58.852 50.000 5.01 0.00 38.76 3.51
1954 2480 2.487805 GCTATGATGAGCCCACATTCCA 60.488 50.000 0.00 0.00 36.38 3.53
1960 2486 2.926778 AGAAGCTATGATGAGCCCAC 57.073 50.000 0.00 0.00 43.97 4.61
1991 2517 0.965866 TGTTGGACAACGGCAAACCA 60.966 50.000 10.27 0.00 43.94 3.67
2006 2532 0.950836 TGCCGGAAGTCATGTTGTTG 59.049 50.000 5.05 0.00 0.00 3.33
2022 2548 0.538118 TGGTACGGTAATCCTGTGCC 59.462 55.000 1.92 1.92 40.35 5.01
2024 2550 2.758979 AGAGTGGTACGGTAATCCTGTG 59.241 50.000 0.00 0.00 0.00 3.66
2073 2599 3.026630 TCAAGTTACTGCTGAACCTCG 57.973 47.619 0.00 0.00 0.00 4.63
2083 2609 6.420903 TCACGAAACTTCAGATCAAGTTACTG 59.579 38.462 10.61 7.35 44.28 2.74
2105 2631 7.171848 CAGAGAGGAAGAAATGATGATGATCAC 59.828 40.741 0.00 0.00 41.52 3.06
2131 2658 0.321298 ACGTGATGCCTACACCAACC 60.321 55.000 0.00 0.00 35.17 3.77
2150 2677 4.641396 ACCACATCAGAGAAAATCGTTCA 58.359 39.130 0.00 0.00 0.00 3.18
2154 2681 6.183360 GGAAAGTACCACATCAGAGAAAATCG 60.183 42.308 0.00 0.00 0.00 3.34
2156 2683 6.542821 TGGAAAGTACCACATCAGAGAAAAT 58.457 36.000 0.00 0.00 34.77 1.82
2171 2698 7.660208 TGTACCTTCTCTTGAATTGGAAAGTAC 59.340 37.037 0.00 0.00 36.73 2.73
2224 2751 3.400255 TCTCTCGAAAGAAGTGAGTCGA 58.600 45.455 0.00 0.00 41.32 4.20
2226 2753 5.525199 AGTTTCTCTCGAAAGAAGTGAGTC 58.475 41.667 0.78 0.00 39.65 3.36
2266 2793 5.246981 AGATCTTTGTTGGTGAGAATGGA 57.753 39.130 0.00 0.00 0.00 3.41
2274 2801 3.610114 CGAAGGCAAGATCTTTGTTGGTG 60.610 47.826 4.86 0.00 0.00 4.17
2276 2803 2.095059 CCGAAGGCAAGATCTTTGTTGG 60.095 50.000 4.86 1.16 46.14 3.77
2345 2872 0.601558 AAAGCGGAGAAGTGCGTCTA 59.398 50.000 0.00 0.00 40.19 2.59
2350 2877 1.172812 AACCCAAAGCGGAGAAGTGC 61.173 55.000 0.00 0.00 36.56 4.40
2414 2941 7.549615 AAGAAACTTAAGCTGTCGTAGTTTT 57.450 32.000 1.29 0.00 31.79 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.