Multiple sequence alignment - TraesCS1D01G103400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G103400 chr1D 100.000 3491 0 0 1 3491 93098717 93102207 0.000000e+00 6447.0
1 TraesCS1D01G103400 chr1B 94.354 2568 119 14 933 3491 148410785 148413335 0.000000e+00 3916.0
2 TraesCS1D01G103400 chr1B 81.851 281 38 12 228 500 681018874 681019149 1.260000e-54 224.0
3 TraesCS1D01G103400 chr1B 91.837 49 3 1 839 886 148410623 148410671 2.250000e-07 67.6
4 TraesCS1D01G103400 chr1A 95.458 2422 90 10 905 3321 90157654 90160060 0.000000e+00 3845.0
5 TraesCS1D01G103400 chr1A 97.126 174 5 0 3318 3491 90160371 90160544 9.480000e-76 294.0
6 TraesCS1D01G103400 chr1A 80.195 308 44 11 227 519 366549465 366549160 7.590000e-52 215.0
7 TraesCS1D01G103400 chr1A 82.759 87 10 5 84 169 165195594 165195512 4.830000e-09 73.1
8 TraesCS1D01G103400 chr7A 83.562 292 41 5 227 512 70750513 70750803 2.070000e-67 267.0
9 TraesCS1D01G103400 chr7A 86.420 81 8 2 1 78 665673920 665673840 6.210000e-13 86.1
10 TraesCS1D01G103400 chr7A 95.833 48 2 0 86 133 639363382 639363335 1.040000e-10 78.7
11 TraesCS1D01G103400 chr7A 93.750 48 3 0 86 133 639280676 639280723 4.830000e-09 73.1
12 TraesCS1D01G103400 chr7B 81.553 309 36 16 228 523 486742707 486742407 5.830000e-58 235.0
13 TraesCS1D01G103400 chr7B 77.867 375 57 22 166 518 638078036 638078406 3.530000e-50 209.0
14 TraesCS1D01G103400 chr7B 72.455 334 67 21 96 411 207678975 207678649 2.230000e-12 84.2
15 TraesCS1D01G103400 chr5B 82.105 285 32 12 223 495 514934980 514934703 3.510000e-55 226.0
16 TraesCS1D01G103400 chr5B 88.750 80 6 1 1 77 545200949 545200870 1.030000e-15 95.3
17 TraesCS1D01G103400 chr5B 86.585 82 8 1 2 80 24239124 24239205 1.730000e-13 87.9
18 TraesCS1D01G103400 chr2D 80.592 304 46 10 217 511 13570311 13570012 4.540000e-54 222.0
19 TraesCS1D01G103400 chr2D 90.789 76 4 1 8 80 51408593 51408518 7.970000e-17 99.0
20 TraesCS1D01G103400 chr4D 78.736 348 54 16 173 506 488418887 488419228 7.590000e-52 215.0
21 TraesCS1D01G103400 chr4D 90.361 83 5 1 1 80 372532286 372532204 4.770000e-19 106.0
22 TraesCS1D01G103400 chr3D 78.386 347 58 12 184 517 104131957 104132299 3.530000e-50 209.0
23 TraesCS1D01G103400 chr3D 88.889 81 6 1 3 80 2630391 2630471 2.870000e-16 97.1
24 TraesCS1D01G103400 chr3D 82.569 109 15 3 65 169 584113297 584113405 3.710000e-15 93.5
25 TraesCS1D01G103400 chr2A 87.805 82 10 0 86 167 655897715 655897634 2.870000e-16 97.1
26 TraesCS1D01G103400 chr6B 89.189 74 7 1 86 158 563085678 563085751 1.330000e-14 91.6
27 TraesCS1D01G103400 chr6B 82.143 84 9 6 532 610 715532834 715532916 2.250000e-07 67.6
28 TraesCS1D01G103400 chrUn 85.227 88 12 1 86 172 86399932 86399845 4.800000e-14 89.8
29 TraesCS1D01G103400 chr6D 81.651 109 17 1 1 106 387797307 387797199 1.730000e-13 87.9
30 TraesCS1D01G103400 chr3B 85.714 84 8 2 1 80 34114805 34114722 6.210000e-13 86.1
31 TraesCS1D01G103400 chr2B 82.653 98 12 3 1 94 522308945 522308849 8.030000e-12 82.4
32 TraesCS1D01G103400 chr2B 83.099 71 11 1 86 155 118143764 118143834 2.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G103400 chr1D 93098717 93102207 3490 False 6447.0 6447 100.0000 1 3491 1 chr1D.!!$F1 3490
1 TraesCS1D01G103400 chr1B 148410623 148413335 2712 False 1991.8 3916 93.0955 839 3491 2 chr1B.!!$F2 2652
2 TraesCS1D01G103400 chr1A 90157654 90160544 2890 False 2069.5 3845 96.2920 905 3491 2 chr1A.!!$F1 2586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 838 0.029700 TCGCGAAGAACACTCGTCAA 59.970 50.0 6.2 0.0 31.09 3.18 F
838 839 0.158928 CGCGAAGAACACTCGTCAAC 59.841 55.0 0.0 0.0 31.09 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 1936 1.133253 CATCTTGCGCACGACCAAG 59.867 57.895 19.66 8.56 39.74 3.61 R
2714 2781 1.805428 GCAGCACCATGGAAACCGTT 61.805 55.000 21.47 0.00 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.312383 CGTACTGCACGTGTGTCA 57.688 55.556 18.38 5.77 45.82 3.58
21 22 1.844003 CGTACTGCACGTGTGTCAC 59.156 57.895 18.38 9.58 45.82 3.67
22 23 0.594028 CGTACTGCACGTGTGTCACT 60.594 55.000 18.38 0.00 45.82 3.41
23 24 1.567504 GTACTGCACGTGTGTCACTT 58.432 50.000 18.38 0.00 31.34 3.16
24 25 1.257936 GTACTGCACGTGTGTCACTTG 59.742 52.381 18.38 2.93 36.82 3.16
25 26 0.391130 ACTGCACGTGTGTCACTTGT 60.391 50.000 18.38 0.00 36.27 3.16
26 27 0.301687 CTGCACGTGTGTCACTTGTC 59.698 55.000 18.38 0.00 36.27 3.18
27 28 1.272715 GCACGTGTGTCACTTGTCG 59.727 57.895 18.38 6.69 36.27 4.35
28 29 1.272715 CACGTGTGTCACTTGTCGC 59.727 57.895 7.58 0.00 30.59 5.19
29 30 1.153726 ACGTGTGTCACTTGTCGCA 60.154 52.632 4.27 0.00 31.34 5.10
30 31 0.738063 ACGTGTGTCACTTGTCGCAA 60.738 50.000 4.27 0.00 31.34 4.85
31 32 0.043053 CGTGTGTCACTTGTCGCAAG 60.043 55.000 15.16 15.16 31.34 4.01
32 33 2.389031 CGTGTGTCACTTGTCGCAAGA 61.389 52.381 21.19 2.99 36.60 3.02
33 34 4.219820 CGTGTGTCACTTGTCGCAAGAG 62.220 54.545 21.19 15.27 38.74 2.85
44 45 2.930826 TCGCAAGAGAGTTTTCCCTT 57.069 45.000 0.00 0.00 45.01 3.95
45 46 3.208747 TCGCAAGAGAGTTTTCCCTTT 57.791 42.857 0.00 0.00 45.01 3.11
46 47 3.551846 TCGCAAGAGAGTTTTCCCTTTT 58.448 40.909 0.00 0.00 45.01 2.27
47 48 3.951680 TCGCAAGAGAGTTTTCCCTTTTT 59.048 39.130 0.00 0.00 45.01 1.94
93 94 9.614792 AAATGTTTTATCTTCTAATCCTAGCGT 57.385 29.630 0.00 0.00 0.00 5.07
94 95 9.614792 AATGTTTTATCTTCTAATCCTAGCGTT 57.385 29.630 0.00 0.00 0.00 4.84
95 96 8.420374 TGTTTTATCTTCTAATCCTAGCGTTG 57.580 34.615 0.00 0.00 0.00 4.10
96 97 8.255206 TGTTTTATCTTCTAATCCTAGCGTTGA 58.745 33.333 0.00 0.00 0.00 3.18
97 98 8.756864 GTTTTATCTTCTAATCCTAGCGTTGAG 58.243 37.037 0.00 0.00 0.00 3.02
98 99 7.818997 TTATCTTCTAATCCTAGCGTTGAGA 57.181 36.000 0.00 0.00 0.00 3.27
99 100 6.909550 ATCTTCTAATCCTAGCGTTGAGAT 57.090 37.500 0.00 0.00 0.00 2.75
100 101 6.320494 TCTTCTAATCCTAGCGTTGAGATC 57.680 41.667 0.00 0.00 0.00 2.75
101 102 6.065374 TCTTCTAATCCTAGCGTTGAGATCT 58.935 40.000 0.00 0.00 0.00 2.75
102 103 6.547880 TCTTCTAATCCTAGCGTTGAGATCTT 59.452 38.462 0.00 0.00 0.00 2.40
103 104 6.320494 TCTAATCCTAGCGTTGAGATCTTC 57.680 41.667 0.00 0.00 0.00 2.87
104 105 5.828328 TCTAATCCTAGCGTTGAGATCTTCA 59.172 40.000 0.00 0.00 0.00 3.02
105 106 5.344743 AATCCTAGCGTTGAGATCTTCAA 57.655 39.130 0.00 0.00 43.40 2.69
106 107 4.801330 TCCTAGCGTTGAGATCTTCAAA 57.199 40.909 0.00 0.00 46.85 2.69
107 108 5.147330 TCCTAGCGTTGAGATCTTCAAAA 57.853 39.130 0.00 0.00 46.85 2.44
108 109 4.929808 TCCTAGCGTTGAGATCTTCAAAAC 59.070 41.667 0.00 0.00 46.85 2.43
109 110 4.932200 CCTAGCGTTGAGATCTTCAAAACT 59.068 41.667 0.00 6.46 46.85 2.66
110 111 6.071560 TCCTAGCGTTGAGATCTTCAAAACTA 60.072 38.462 0.00 7.16 46.85 2.24
111 112 6.254589 CCTAGCGTTGAGATCTTCAAAACTAG 59.745 42.308 21.10 21.10 46.85 2.57
112 113 5.784177 AGCGTTGAGATCTTCAAAACTAGA 58.216 37.500 0.00 0.00 46.85 2.43
113 114 6.402222 AGCGTTGAGATCTTCAAAACTAGAT 58.598 36.000 0.00 0.00 46.85 1.98
114 115 6.533367 AGCGTTGAGATCTTCAAAACTAGATC 59.467 38.462 0.00 0.00 46.85 2.75
115 116 6.237969 GCGTTGAGATCTTCAAAACTAGATCC 60.238 42.308 0.00 2.51 46.85 3.36
116 117 6.256757 CGTTGAGATCTTCAAAACTAGATCCC 59.743 42.308 0.00 0.00 46.85 3.85
117 118 6.240549 TGAGATCTTCAAAACTAGATCCCC 57.759 41.667 0.00 3.05 38.24 4.81
118 119 5.966935 TGAGATCTTCAAAACTAGATCCCCT 59.033 40.000 0.00 0.00 38.24 4.79
119 120 6.126940 TGAGATCTTCAAAACTAGATCCCCTG 60.127 42.308 0.00 0.00 38.24 4.45
120 121 5.728741 AGATCTTCAAAACTAGATCCCCTGT 59.271 40.000 0.00 0.00 38.24 4.00
121 122 5.843019 TCTTCAAAACTAGATCCCCTGTT 57.157 39.130 0.00 0.00 0.00 3.16
122 123 5.560724 TCTTCAAAACTAGATCCCCTGTTG 58.439 41.667 0.00 0.00 0.00 3.33
123 124 5.309543 TCTTCAAAACTAGATCCCCTGTTGA 59.690 40.000 0.00 0.00 0.00 3.18
124 125 5.779241 TCAAAACTAGATCCCCTGTTGAT 57.221 39.130 0.00 0.00 0.00 2.57
125 126 6.884472 TCAAAACTAGATCCCCTGTTGATA 57.116 37.500 0.00 0.00 0.00 2.15
126 127 6.889198 TCAAAACTAGATCCCCTGTTGATAG 58.111 40.000 0.00 0.00 0.00 2.08
127 128 5.896073 AAACTAGATCCCCTGTTGATAGG 57.104 43.478 0.00 0.00 37.59 2.57
128 129 4.561254 ACTAGATCCCCTGTTGATAGGT 57.439 45.455 0.00 0.00 36.02 3.08
129 130 4.897051 ACTAGATCCCCTGTTGATAGGTT 58.103 43.478 0.00 0.00 36.02 3.50
130 131 5.289510 ACTAGATCCCCTGTTGATAGGTTT 58.710 41.667 0.00 0.00 36.02 3.27
131 132 5.731678 ACTAGATCCCCTGTTGATAGGTTTT 59.268 40.000 0.00 0.00 36.02 2.43
132 133 4.860022 AGATCCCCTGTTGATAGGTTTTG 58.140 43.478 0.00 0.00 36.02 2.44
133 134 4.292306 AGATCCCCTGTTGATAGGTTTTGT 59.708 41.667 0.00 0.00 36.02 2.83
134 135 4.463050 TCCCCTGTTGATAGGTTTTGTT 57.537 40.909 0.00 0.00 36.02 2.83
135 136 4.148838 TCCCCTGTTGATAGGTTTTGTTG 58.851 43.478 0.00 0.00 36.02 3.33
136 137 4.141135 TCCCCTGTTGATAGGTTTTGTTGA 60.141 41.667 0.00 0.00 36.02 3.18
137 138 4.772100 CCCCTGTTGATAGGTTTTGTTGAT 59.228 41.667 0.00 0.00 36.02 2.57
138 139 5.245977 CCCCTGTTGATAGGTTTTGTTGATT 59.754 40.000 0.00 0.00 36.02 2.57
139 140 6.239572 CCCCTGTTGATAGGTTTTGTTGATTT 60.240 38.462 0.00 0.00 36.02 2.17
140 141 7.216494 CCCTGTTGATAGGTTTTGTTGATTTT 58.784 34.615 0.00 0.00 36.02 1.82
141 142 7.714813 CCCTGTTGATAGGTTTTGTTGATTTTT 59.285 33.333 0.00 0.00 36.02 1.94
224 225 6.861065 TTTCATTTCCGATAGAGCAATACC 57.139 37.500 0.00 0.00 39.76 2.73
225 226 5.545063 TCATTTCCGATAGAGCAATACCA 57.455 39.130 0.00 0.00 39.76 3.25
226 227 6.114187 TCATTTCCGATAGAGCAATACCAT 57.886 37.500 0.00 0.00 39.76 3.55
227 228 5.934043 TCATTTCCGATAGAGCAATACCATG 59.066 40.000 0.00 0.00 39.76 3.66
228 229 3.319137 TCCGATAGAGCAATACCATGC 57.681 47.619 0.00 0.00 46.78 4.06
235 236 3.386543 GCAATACCATGCCTCTCGT 57.613 52.632 0.00 0.00 40.49 4.18
236 237 0.940126 GCAATACCATGCCTCTCGTG 59.060 55.000 0.00 0.00 40.49 4.35
241 242 3.805267 CATGCCTCTCGTGGAAGC 58.195 61.111 0.00 0.00 32.35 3.86
242 243 1.078918 CATGCCTCTCGTGGAAGCA 60.079 57.895 6.83 6.83 44.30 3.91
243 244 0.674581 CATGCCTCTCGTGGAAGCAA 60.675 55.000 8.06 0.00 43.54 3.91
244 245 0.036732 ATGCCTCTCGTGGAAGCAAA 59.963 50.000 8.06 0.00 43.54 3.68
245 246 0.179032 TGCCTCTCGTGGAAGCAAAA 60.179 50.000 2.93 0.00 38.32 2.44
246 247 1.168714 GCCTCTCGTGGAAGCAAAAT 58.831 50.000 0.00 0.00 32.03 1.82
247 248 1.131315 GCCTCTCGTGGAAGCAAAATC 59.869 52.381 0.00 0.00 32.03 2.17
248 249 1.394917 CCTCTCGTGGAAGCAAAATCG 59.605 52.381 0.00 0.00 0.00 3.34
249 250 2.069273 CTCTCGTGGAAGCAAAATCGT 58.931 47.619 0.00 0.00 0.00 3.73
250 251 3.250744 CTCTCGTGGAAGCAAAATCGTA 58.749 45.455 0.00 0.00 0.00 3.43
251 252 2.991190 TCTCGTGGAAGCAAAATCGTAC 59.009 45.455 0.00 0.00 0.00 3.67
252 253 2.070783 TCGTGGAAGCAAAATCGTACC 58.929 47.619 0.00 0.00 0.00 3.34
253 254 2.073816 CGTGGAAGCAAAATCGTACCT 58.926 47.619 0.00 0.00 0.00 3.08
254 255 2.093783 CGTGGAAGCAAAATCGTACCTC 59.906 50.000 0.00 0.00 0.00 3.85
255 256 3.335579 GTGGAAGCAAAATCGTACCTCT 58.664 45.455 0.00 0.00 0.00 3.69
256 257 3.371285 GTGGAAGCAAAATCGTACCTCTC 59.629 47.826 0.00 0.00 0.00 3.20
257 258 3.007506 TGGAAGCAAAATCGTACCTCTCA 59.992 43.478 0.00 0.00 0.00 3.27
258 259 4.192317 GGAAGCAAAATCGTACCTCTCAT 58.808 43.478 0.00 0.00 0.00 2.90
259 260 4.034510 GGAAGCAAAATCGTACCTCTCATG 59.965 45.833 0.00 0.00 0.00 3.07
260 261 3.535561 AGCAAAATCGTACCTCTCATGG 58.464 45.455 0.00 0.00 0.00 3.66
261 262 3.197766 AGCAAAATCGTACCTCTCATGGA 59.802 43.478 0.00 0.00 0.00 3.41
262 263 3.938963 GCAAAATCGTACCTCTCATGGAA 59.061 43.478 0.00 0.00 0.00 3.53
263 264 4.394920 GCAAAATCGTACCTCTCATGGAAA 59.605 41.667 0.00 0.00 0.00 3.13
264 265 5.106317 GCAAAATCGTACCTCTCATGGAAAA 60.106 40.000 0.00 0.00 0.00 2.29
265 266 6.569610 GCAAAATCGTACCTCTCATGGAAAAA 60.570 38.462 0.00 0.00 0.00 1.94
295 296 6.944557 AAAACACTTTTTCTTGTTTCCGAG 57.055 33.333 0.49 0.00 43.53 4.63
296 297 5.890424 AACACTTTTTCTTGTTTCCGAGA 57.110 34.783 0.00 0.00 31.78 4.04
297 298 5.485662 ACACTTTTTCTTGTTTCCGAGAG 57.514 39.130 0.00 0.00 32.59 3.20
298 299 6.625081 AAACACTTTTTCTTGTTTCCGAGAGG 60.625 38.462 0.00 0.00 41.09 3.69
299 300 9.905275 AAACACTTTTTCTTGTTTCCGAGAGGC 62.905 40.741 0.00 0.00 41.09 4.70
333 334 4.458164 CGGAAGCAAAATCGTGCC 57.542 55.556 0.00 0.00 46.14 5.01
334 335 1.875963 CGGAAGCAAAATCGTGCCT 59.124 52.632 0.00 0.00 46.14 4.75
335 336 0.179189 CGGAAGCAAAATCGTGCCTC 60.179 55.000 0.00 0.00 46.14 4.70
336 337 1.168714 GGAAGCAAAATCGTGCCTCT 58.831 50.000 0.00 0.00 46.14 3.69
337 338 1.131315 GGAAGCAAAATCGTGCCTCTC 59.869 52.381 0.00 0.00 46.14 3.20
338 339 1.806542 GAAGCAAAATCGTGCCTCTCA 59.193 47.619 0.00 0.00 46.14 3.27
339 340 2.119801 AGCAAAATCGTGCCTCTCAT 57.880 45.000 0.00 0.00 46.14 2.90
340 341 3.266510 AGCAAAATCGTGCCTCTCATA 57.733 42.857 0.00 0.00 46.14 2.15
341 342 3.609853 AGCAAAATCGTGCCTCTCATAA 58.390 40.909 0.00 0.00 46.14 1.90
342 343 4.009675 AGCAAAATCGTGCCTCTCATAAA 58.990 39.130 0.00 0.00 46.14 1.40
343 344 4.458989 AGCAAAATCGTGCCTCTCATAAAA 59.541 37.500 0.00 0.00 46.14 1.52
344 345 4.795278 GCAAAATCGTGCCTCTCATAAAAG 59.205 41.667 0.00 0.00 38.66 2.27
345 346 5.335127 CAAAATCGTGCCTCTCATAAAAGG 58.665 41.667 0.00 0.00 35.65 3.11
346 347 4.487714 AATCGTGCCTCTCATAAAAGGA 57.512 40.909 0.00 0.00 34.35 3.36
347 348 3.973206 TCGTGCCTCTCATAAAAGGAA 57.027 42.857 0.00 0.00 34.35 3.36
348 349 4.280436 TCGTGCCTCTCATAAAAGGAAA 57.720 40.909 0.00 0.00 34.35 3.13
349 350 4.647611 TCGTGCCTCTCATAAAAGGAAAA 58.352 39.130 0.00 0.00 34.35 2.29
350 351 5.067273 TCGTGCCTCTCATAAAAGGAAAAA 58.933 37.500 0.00 0.00 34.35 1.94
388 389 2.861006 GTTTTCGAGAGGCACCGC 59.139 61.111 0.00 0.00 0.00 5.68
417 418 4.914291 CGGAAGCAAAACCGTGTC 57.086 55.556 0.00 0.00 43.53 3.67
418 419 2.317230 CGGAAGCAAAACCGTGTCT 58.683 52.632 0.00 0.00 43.53 3.41
419 420 0.234884 CGGAAGCAAAACCGTGTCTC 59.765 55.000 0.00 0.00 43.53 3.36
420 421 1.594331 GGAAGCAAAACCGTGTCTCT 58.406 50.000 0.00 0.00 0.00 3.10
421 422 1.531578 GGAAGCAAAACCGTGTCTCTC 59.468 52.381 0.00 0.00 0.00 3.20
422 423 1.192534 GAAGCAAAACCGTGTCTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
423 424 0.104304 AGCAAAACCGTGTCTCTCGT 59.896 50.000 0.00 0.00 0.00 4.18
424 425 0.232303 GCAAAACCGTGTCTCTCGTG 59.768 55.000 0.00 0.00 0.00 4.35
425 426 1.847818 CAAAACCGTGTCTCTCGTGA 58.152 50.000 0.00 0.00 0.00 4.35
426 427 1.787155 CAAAACCGTGTCTCTCGTGAG 59.213 52.381 8.20 8.20 41.51 3.51
427 428 1.315690 AAACCGTGTCTCTCGTGAGA 58.684 50.000 12.98 12.98 46.13 3.27
466 467 8.466086 AAACATATTTTTCATTTTCGAGAGGC 57.534 30.769 0.00 0.00 0.00 4.70
467 468 7.156876 ACATATTTTTCATTTTCGAGAGGCA 57.843 32.000 0.00 0.00 0.00 4.75
468 469 7.029563 ACATATTTTTCATTTTCGAGAGGCAC 58.970 34.615 0.00 0.00 0.00 5.01
469 470 3.536158 TTTTCATTTTCGAGAGGCACG 57.464 42.857 0.00 0.00 0.00 5.34
470 471 1.438651 TTCATTTTCGAGAGGCACGG 58.561 50.000 0.00 0.00 0.00 4.94
471 472 1.019278 TCATTTTCGAGAGGCACGGC 61.019 55.000 0.00 0.00 0.00 5.68
500 501 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
501 502 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
502 503 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
503 504 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
504 505 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
505 506 0.465460 AAGCAAAACCGTGCCTCTCA 60.465 50.000 0.00 0.00 46.14 3.27
506 507 0.250901 AGCAAAACCGTGCCTCTCAT 60.251 50.000 0.00 0.00 46.14 2.90
507 508 0.109597 GCAAAACCGTGCCTCTCATG 60.110 55.000 0.00 0.00 38.66 3.07
508 509 1.522668 CAAAACCGTGCCTCTCATGA 58.477 50.000 0.00 0.00 33.49 3.07
509 510 1.879380 CAAAACCGTGCCTCTCATGAA 59.121 47.619 0.00 0.00 33.49 2.57
510 511 2.270352 AAACCGTGCCTCTCATGAAA 57.730 45.000 0.00 0.00 33.49 2.69
511 512 1.813513 AACCGTGCCTCTCATGAAAG 58.186 50.000 0.00 0.00 33.49 2.62
512 513 0.036010 ACCGTGCCTCTCATGAAAGG 60.036 55.000 11.02 11.02 33.49 3.11
513 514 0.250234 CCGTGCCTCTCATGAAAGGA 59.750 55.000 19.75 0.82 34.35 3.36
514 515 1.339055 CCGTGCCTCTCATGAAAGGAA 60.339 52.381 19.75 5.23 34.35 3.36
515 516 2.426522 CGTGCCTCTCATGAAAGGAAA 58.573 47.619 19.75 2.96 34.35 3.13
516 517 2.813754 CGTGCCTCTCATGAAAGGAAAA 59.186 45.455 19.75 0.30 34.35 2.29
517 518 3.253188 CGTGCCTCTCATGAAAGGAAAAA 59.747 43.478 19.75 0.00 34.35 1.94
547 548 2.663826 TTTTCGCACAAGCAAAACCT 57.336 40.000 0.00 0.00 42.27 3.50
548 549 2.663826 TTTCGCACAAGCAAAACCTT 57.336 40.000 0.00 0.00 42.27 3.50
549 550 1.919918 TTCGCACAAGCAAAACCTTG 58.080 45.000 0.72 0.72 45.90 3.61
558 559 1.207593 CAAAACCTTGCCTCTCGCG 59.792 57.895 0.00 0.00 42.08 5.87
559 560 1.070786 AAAACCTTGCCTCTCGCGA 59.929 52.632 9.26 9.26 42.08 5.87
560 561 0.534203 AAAACCTTGCCTCTCGCGAA 60.534 50.000 11.33 0.02 42.08 4.70
561 562 0.534203 AAACCTTGCCTCTCGCGAAA 60.534 50.000 11.33 0.00 42.08 3.46
562 563 0.951040 AACCTTGCCTCTCGCGAAAG 60.951 55.000 11.33 6.30 42.08 2.62
577 578 2.851534 CGAAAGCAAAATCGAACCTCC 58.148 47.619 0.00 0.00 41.43 4.30
578 579 2.484264 CGAAAGCAAAATCGAACCTCCT 59.516 45.455 0.00 0.00 41.43 3.69
579 580 3.424962 CGAAAGCAAAATCGAACCTCCTC 60.425 47.826 0.00 0.00 41.43 3.71
580 581 2.115343 AGCAAAATCGAACCTCCTCC 57.885 50.000 0.00 0.00 0.00 4.30
581 582 1.095600 GCAAAATCGAACCTCCTCCC 58.904 55.000 0.00 0.00 0.00 4.30
582 583 1.369625 CAAAATCGAACCTCCTCCCG 58.630 55.000 0.00 0.00 0.00 5.14
583 584 0.981943 AAAATCGAACCTCCTCCCGT 59.018 50.000 0.00 0.00 0.00 5.28
584 585 1.856629 AAATCGAACCTCCTCCCGTA 58.143 50.000 0.00 0.00 0.00 4.02
585 586 1.400737 AATCGAACCTCCTCCCGTAG 58.599 55.000 0.00 0.00 0.00 3.51
586 587 0.549950 ATCGAACCTCCTCCCGTAGA 59.450 55.000 0.00 0.00 0.00 2.59
587 588 0.329261 TCGAACCTCCTCCCGTAGAA 59.671 55.000 0.00 0.00 0.00 2.10
588 589 0.739561 CGAACCTCCTCCCGTAGAAG 59.260 60.000 0.00 0.00 0.00 2.85
589 590 1.681166 CGAACCTCCTCCCGTAGAAGA 60.681 57.143 0.00 0.00 0.00 2.87
590 591 2.454538 GAACCTCCTCCCGTAGAAGAA 58.545 52.381 0.00 0.00 0.00 2.52
591 592 2.617840 ACCTCCTCCCGTAGAAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
592 593 2.898662 ACCTCCTCCCGTAGAAGAAAA 58.101 47.619 0.00 0.00 0.00 2.29
593 594 3.245441 ACCTCCTCCCGTAGAAGAAAAA 58.755 45.455 0.00 0.00 0.00 1.94
628 629 9.495754 TTTTTCGTGCAAAAATAAATCCAAAAG 57.504 25.926 0.00 0.00 38.76 2.27
629 630 8.425577 TTTCGTGCAAAAATAAATCCAAAAGA 57.574 26.923 0.00 0.00 0.00 2.52
630 631 8.600449 TTCGTGCAAAAATAAATCCAAAAGAT 57.400 26.923 0.00 0.00 36.48 2.40
631 632 9.698309 TTCGTGCAAAAATAAATCCAAAAGATA 57.302 25.926 0.00 0.00 33.66 1.98
632 633 9.698309 TCGTGCAAAAATAAATCCAAAAGATAA 57.302 25.926 0.00 0.00 33.66 1.75
633 634 9.956797 CGTGCAAAAATAAATCCAAAAGATAAG 57.043 29.630 0.00 0.00 33.66 1.73
642 643 7.996098 AAATCCAAAAGATAAGAAAGACCGA 57.004 32.000 0.00 0.00 33.66 4.69
643 644 8.581253 AAATCCAAAAGATAAGAAAGACCGAT 57.419 30.769 0.00 0.00 33.66 4.18
644 645 6.985188 TCCAAAAGATAAGAAAGACCGATG 57.015 37.500 0.00 0.00 0.00 3.84
645 646 6.472887 TCCAAAAGATAAGAAAGACCGATGT 58.527 36.000 0.00 0.00 0.00 3.06
646 647 7.617225 TCCAAAAGATAAGAAAGACCGATGTA 58.383 34.615 0.00 0.00 0.00 2.29
647 648 8.098286 TCCAAAAGATAAGAAAGACCGATGTAA 58.902 33.333 0.00 0.00 0.00 2.41
648 649 8.726988 CCAAAAGATAAGAAAGACCGATGTAAA 58.273 33.333 0.00 0.00 0.00 2.01
652 653 9.667107 AAGATAAGAAAGACCGATGTAAAATCA 57.333 29.630 0.00 0.00 0.00 2.57
653 654 9.667107 AGATAAGAAAGACCGATGTAAAATCAA 57.333 29.630 0.00 0.00 0.00 2.57
657 658 9.463443 AAGAAAGACCGATGTAAAATCAAAAAG 57.537 29.630 0.00 0.00 0.00 2.27
658 659 7.595130 AGAAAGACCGATGTAAAATCAAAAAGC 59.405 33.333 0.00 0.00 0.00 3.51
659 660 5.709966 AGACCGATGTAAAATCAAAAAGCC 58.290 37.500 0.00 0.00 0.00 4.35
660 661 4.481463 ACCGATGTAAAATCAAAAAGCCG 58.519 39.130 0.00 0.00 0.00 5.52
661 662 4.216687 ACCGATGTAAAATCAAAAAGCCGA 59.783 37.500 0.00 0.00 0.00 5.54
662 663 5.157781 CCGATGTAAAATCAAAAAGCCGAA 58.842 37.500 0.00 0.00 0.00 4.30
663 664 5.286082 CCGATGTAAAATCAAAAAGCCGAAG 59.714 40.000 0.00 0.00 0.00 3.79
664 665 6.083630 CGATGTAAAATCAAAAAGCCGAAGA 58.916 36.000 0.00 0.00 0.00 2.87
665 666 6.580791 CGATGTAAAATCAAAAAGCCGAAGAA 59.419 34.615 0.00 0.00 0.00 2.52
666 667 7.114247 CGATGTAAAATCAAAAAGCCGAAGAAA 59.886 33.333 0.00 0.00 0.00 2.52
667 668 7.458038 TGTAAAATCAAAAAGCCGAAGAAAC 57.542 32.000 0.00 0.00 0.00 2.78
668 669 7.036220 TGTAAAATCAAAAAGCCGAAGAAACA 58.964 30.769 0.00 0.00 0.00 2.83
669 670 6.976636 AAAATCAAAAAGCCGAAGAAACAA 57.023 29.167 0.00 0.00 0.00 2.83
670 671 6.976636 AAATCAAAAAGCCGAAGAAACAAA 57.023 29.167 0.00 0.00 0.00 2.83
671 672 6.588348 AATCAAAAAGCCGAAGAAACAAAG 57.412 33.333 0.00 0.00 0.00 2.77
672 673 5.317733 TCAAAAAGCCGAAGAAACAAAGA 57.682 34.783 0.00 0.00 0.00 2.52
673 674 5.715070 TCAAAAAGCCGAAGAAACAAAGAA 58.285 33.333 0.00 0.00 0.00 2.52
674 675 6.159988 TCAAAAAGCCGAAGAAACAAAGAAA 58.840 32.000 0.00 0.00 0.00 2.52
675 676 6.647067 TCAAAAAGCCGAAGAAACAAAGAAAA 59.353 30.769 0.00 0.00 0.00 2.29
676 677 7.171678 TCAAAAAGCCGAAGAAACAAAGAAAAA 59.828 29.630 0.00 0.00 0.00 1.94
699 700 7.401484 AAATATGTACAAAGCCAAAAACACG 57.599 32.000 0.00 0.00 0.00 4.49
700 701 3.851976 TGTACAAAGCCAAAAACACGT 57.148 38.095 0.00 0.00 0.00 4.49
701 702 3.502920 TGTACAAAGCCAAAAACACGTG 58.497 40.909 15.48 15.48 0.00 4.49
702 703 3.190744 TGTACAAAGCCAAAAACACGTGA 59.809 39.130 25.01 0.00 0.00 4.35
703 704 3.305398 ACAAAGCCAAAAACACGTGAA 57.695 38.095 25.01 0.00 0.00 3.18
704 705 3.654414 ACAAAGCCAAAAACACGTGAAA 58.346 36.364 25.01 0.00 0.00 2.69
705 706 4.058817 ACAAAGCCAAAAACACGTGAAAA 58.941 34.783 25.01 0.00 0.00 2.29
706 707 4.511826 ACAAAGCCAAAAACACGTGAAAAA 59.488 33.333 25.01 0.00 0.00 1.94
745 746 2.492090 CGAAGGGAGCGTCCAGAG 59.508 66.667 6.41 0.00 38.64 3.35
746 747 2.185608 GAAGGGAGCGTCCAGAGC 59.814 66.667 6.41 0.00 38.64 4.09
747 748 3.378399 GAAGGGAGCGTCCAGAGCC 62.378 68.421 6.41 0.00 38.64 4.70
750 751 4.500116 GGAGCGTCCAGAGCCGAC 62.500 72.222 0.00 0.00 36.28 4.79
751 752 3.749064 GAGCGTCCAGAGCCGACA 61.749 66.667 0.00 0.00 34.64 4.35
752 753 3.973267 GAGCGTCCAGAGCCGACAC 62.973 68.421 0.00 0.00 34.64 3.67
753 754 4.357947 GCGTCCAGAGCCGACACA 62.358 66.667 0.00 0.00 0.00 3.72
754 755 2.573869 CGTCCAGAGCCGACACAT 59.426 61.111 0.00 0.00 0.00 3.21
755 756 1.807226 CGTCCAGAGCCGACACATA 59.193 57.895 0.00 0.00 0.00 2.29
756 757 0.172578 CGTCCAGAGCCGACACATAA 59.827 55.000 0.00 0.00 0.00 1.90
757 758 1.641577 GTCCAGAGCCGACACATAAC 58.358 55.000 0.00 0.00 0.00 1.89
758 759 0.172578 TCCAGAGCCGACACATAACG 59.827 55.000 0.00 0.00 0.00 3.18
759 760 0.172578 CCAGAGCCGACACATAACGA 59.827 55.000 0.00 0.00 0.00 3.85
760 761 1.202417 CCAGAGCCGACACATAACGAT 60.202 52.381 0.00 0.00 0.00 3.73
761 762 1.854743 CAGAGCCGACACATAACGATG 59.145 52.381 0.00 0.00 39.16 3.84
762 763 1.749063 AGAGCCGACACATAACGATGA 59.251 47.619 0.00 0.00 36.48 2.92
763 764 1.852895 GAGCCGACACATAACGATGAC 59.147 52.381 0.00 0.00 36.48 3.06
764 765 1.476891 AGCCGACACATAACGATGACT 59.523 47.619 0.00 0.00 36.48 3.41
765 766 1.588404 GCCGACACATAACGATGACTG 59.412 52.381 0.00 0.00 36.48 3.51
766 767 2.193447 CCGACACATAACGATGACTGG 58.807 52.381 0.00 0.00 36.48 4.00
767 768 2.193447 CGACACATAACGATGACTGGG 58.807 52.381 0.00 0.00 36.48 4.45
768 769 2.159296 CGACACATAACGATGACTGGGA 60.159 50.000 0.00 0.00 36.48 4.37
769 770 3.448686 GACACATAACGATGACTGGGAG 58.551 50.000 0.00 0.00 36.48 4.30
770 771 2.205074 CACATAACGATGACTGGGAGC 58.795 52.381 0.00 0.00 36.48 4.70
771 772 1.202417 ACATAACGATGACTGGGAGCG 60.202 52.381 0.00 0.00 36.48 5.03
772 773 0.249489 ATAACGATGACTGGGAGCGC 60.249 55.000 0.00 0.00 0.00 5.92
773 774 2.607668 TAACGATGACTGGGAGCGCG 62.608 60.000 0.00 0.00 0.00 6.86
775 776 4.521062 GATGACTGGGAGCGCGCT 62.521 66.667 37.28 37.28 0.00 5.92
776 777 3.138930 GATGACTGGGAGCGCGCTA 62.139 63.158 36.69 18.72 0.00 4.26
777 778 2.427540 GATGACTGGGAGCGCGCTAT 62.428 60.000 36.69 22.29 0.00 2.97
778 779 2.659897 GACTGGGAGCGCGCTATG 60.660 66.667 36.69 24.55 0.00 2.23
779 780 3.432051 GACTGGGAGCGCGCTATGT 62.432 63.158 36.69 27.52 0.00 2.29
780 781 2.659897 CTGGGAGCGCGCTATGTC 60.660 66.667 36.69 21.94 0.00 3.06
781 782 4.569023 TGGGAGCGCGCTATGTCG 62.569 66.667 36.69 0.00 0.00 4.35
790 791 3.606826 GCTATGTCGCGTGCTCTC 58.393 61.111 5.77 0.00 0.00 3.20
791 792 1.226688 GCTATGTCGCGTGCTCTCA 60.227 57.895 5.77 0.00 0.00 3.27
792 793 1.205485 GCTATGTCGCGTGCTCTCAG 61.205 60.000 5.77 0.00 0.00 3.35
793 794 1.205485 CTATGTCGCGTGCTCTCAGC 61.205 60.000 5.77 0.00 42.82 4.26
794 795 2.613739 TATGTCGCGTGCTCTCAGCC 62.614 60.000 5.77 0.00 41.51 4.85
799 800 4.767255 CGTGCTCTCAGCCCACCC 62.767 72.222 0.00 0.00 41.51 4.61
800 801 3.640407 GTGCTCTCAGCCCACCCA 61.640 66.667 0.00 0.00 41.51 4.51
801 802 2.853542 TGCTCTCAGCCCACCCAA 60.854 61.111 0.00 0.00 41.51 4.12
802 803 2.045536 GCTCTCAGCCCACCCAAG 60.046 66.667 0.00 0.00 34.48 3.61
803 804 2.900106 GCTCTCAGCCCACCCAAGT 61.900 63.158 0.00 0.00 34.48 3.16
804 805 1.002868 CTCTCAGCCCACCCAAGTG 60.003 63.158 0.00 0.00 44.12 3.16
813 814 4.096003 ACCCAAGTGATCGGCGGG 62.096 66.667 7.21 7.55 43.02 6.13
814 815 3.781307 CCCAAGTGATCGGCGGGA 61.781 66.667 7.21 0.00 39.44 5.14
815 816 2.202932 CCAAGTGATCGGCGGGAG 60.203 66.667 7.21 0.00 0.00 4.30
816 817 2.202932 CAAGTGATCGGCGGGAGG 60.203 66.667 7.21 0.00 0.00 4.30
828 829 2.509561 GGGAGGCTCGCGAAGAAC 60.510 66.667 16.19 2.24 0.00 3.01
829 830 2.261671 GGAGGCTCGCGAAGAACA 59.738 61.111 11.33 0.00 0.00 3.18
830 831 2.095252 GGAGGCTCGCGAAGAACAC 61.095 63.158 11.33 0.00 0.00 3.32
831 832 1.080434 GAGGCTCGCGAAGAACACT 60.080 57.895 11.33 1.74 0.00 3.55
832 833 1.073768 GAGGCTCGCGAAGAACACTC 61.074 60.000 11.33 7.84 0.00 3.51
833 834 2.437343 GGCTCGCGAAGAACACTCG 61.437 63.158 11.33 0.00 0.00 4.18
834 835 1.729838 GCTCGCGAAGAACACTCGT 60.730 57.895 11.33 0.00 0.00 4.18
835 836 1.666446 GCTCGCGAAGAACACTCGTC 61.666 60.000 11.33 0.00 0.00 4.20
836 837 0.385598 CTCGCGAAGAACACTCGTCA 60.386 55.000 11.33 0.00 31.09 4.35
837 838 0.029700 TCGCGAAGAACACTCGTCAA 59.970 50.000 6.20 0.00 31.09 3.18
838 839 0.158928 CGCGAAGAACACTCGTCAAC 59.841 55.000 0.00 0.00 31.09 3.18
839 840 1.488527 GCGAAGAACACTCGTCAACT 58.511 50.000 0.00 0.00 31.09 3.16
840 841 1.452399 GCGAAGAACACTCGTCAACTC 59.548 52.381 0.00 0.00 31.09 3.01
841 842 2.727777 CGAAGAACACTCGTCAACTCA 58.272 47.619 0.00 0.00 31.09 3.41
842 843 2.721603 CGAAGAACACTCGTCAACTCAG 59.278 50.000 0.00 0.00 31.09 3.35
843 844 3.707793 GAAGAACACTCGTCAACTCAGT 58.292 45.455 0.00 0.00 31.09 3.41
844 845 3.802948 AGAACACTCGTCAACTCAGTT 57.197 42.857 0.00 0.00 0.00 3.16
845 846 3.448686 AGAACACTCGTCAACTCAGTTG 58.551 45.455 11.69 11.69 43.99 3.16
911 925 5.334957 GCAGACTTGAAAGGCCTAAAGTAAC 60.335 44.000 21.96 13.91 33.27 2.50
916 957 4.648651 TGAAAGGCCTAAAGTAACTGTCC 58.351 43.478 5.16 0.00 0.00 4.02
936 977 4.023291 TCCCTAATTTAGCCCAGCAAAAG 58.977 43.478 0.00 0.00 0.00 2.27
988 1054 1.079127 GTACATCGTGTGGCAGGCT 60.079 57.895 0.00 0.00 0.00 4.58
989 1055 1.079197 TACATCGTGTGGCAGGCTG 60.079 57.895 10.94 10.94 0.00 4.85
990 1056 3.807538 CATCGTGTGGCAGGCTGC 61.808 66.667 30.93 30.93 44.08 5.25
1137 1203 1.581954 CGCCATCCTAGCTACCTCG 59.418 63.158 0.00 0.00 0.00 4.63
1296 1362 3.869272 CTTCTGCGGCGCATGGTC 61.869 66.667 36.35 3.60 38.13 4.02
1477 1543 1.445410 GACATGTACGCGAGGTGCA 60.445 57.895 15.93 0.00 46.97 4.57
1625 1691 4.097892 GTCAATGGTTTCTTGTGAGGTTGT 59.902 41.667 0.00 0.00 0.00 3.32
1734 1800 3.091545 TCTTGGTGCAGGATTTGATTCC 58.908 45.455 0.00 0.00 35.90 3.01
1814 1880 1.811359 AGCAGAGCTTGTCTTCAATGC 59.189 47.619 0.00 0.00 33.89 3.56
1816 1882 1.129998 CAGAGCTTGTCTTCAATGCGG 59.870 52.381 0.00 0.00 34.98 5.69
1863 1929 4.276183 TGGACTACGATGATCTCAGCTTAC 59.724 45.833 0.00 0.00 0.00 2.34
1881 1947 4.389576 GGCAAGCTTGGTCGTGCG 62.390 66.667 27.10 0.00 41.32 5.34
1887 1953 2.680913 GCTTGGTCGTGCGCAAGAT 61.681 57.895 28.07 0.00 43.02 2.40
1890 1956 3.422303 GGTCGTGCGCAAGATGCA 61.422 61.111 28.07 3.65 45.36 3.96
1896 1962 0.729116 GTGCGCAAGATGCAGTATGT 59.271 50.000 14.00 0.00 45.36 2.29
1947 2013 6.654161 GCATCAAAAGAGATGGAGTAGCATAT 59.346 38.462 6.13 0.00 44.33 1.78
1999 2065 2.484947 GGACTTGTTCGAGAAGGTTGGT 60.485 50.000 10.14 0.00 0.00 3.67
2000 2066 2.544267 GACTTGTTCGAGAAGGTTGGTG 59.456 50.000 10.14 0.00 0.00 4.17
2028 2094 3.318839 TCAAGTTTCTGTTTGATGGCCAG 59.681 43.478 13.05 0.00 0.00 4.85
2064 2130 2.391389 GCCTGAGCACTACGGTTGC 61.391 63.158 0.00 0.00 39.53 4.17
2082 2148 4.142093 GGTTGCATGGCAGATCTAATTTGT 60.142 41.667 0.00 0.00 40.61 2.83
2145 2211 1.014044 TGCCGTTTGAGTCGAGCATC 61.014 55.000 0.00 0.00 32.83 3.91
2199 2265 4.692625 CGAATCTATGGGGATGCTAAGTTG 59.307 45.833 0.00 0.00 0.00 3.16
2273 2339 7.174253 CAGTAACTGGGTTGCTTTATCAAGTAA 59.826 37.037 0.00 0.00 36.42 2.24
2340 2406 3.392616 AGAACATGAACAGAGAGTGGGTT 59.607 43.478 0.00 0.00 0.00 4.11
2479 2545 4.472833 AGGAAGATATATGGGTGATGCCTC 59.527 45.833 0.00 0.00 37.43 4.70
2492 2558 4.210331 GTGATGCCTCCAAAACCATAGAT 58.790 43.478 0.00 0.00 0.00 1.98
2638 2704 9.826574 ATGAAAATATGTCCATGGAAATTTGAG 57.173 29.630 22.79 0.00 0.00 3.02
2672 2738 5.834204 AGAGGATAAGTAAGGTGATACGCTT 59.166 40.000 0.00 0.00 0.00 4.68
2727 2794 0.602562 ACATGCAACGGTTTCCATGG 59.397 50.000 23.88 4.97 39.39 3.66
2912 2986 9.793259 CCCCTATAGCTCTTGTTTCATTTATAA 57.207 33.333 0.00 0.00 0.00 0.98
2976 3053 5.754406 TCATGCAATTTCACAGGAACTTTTG 59.246 36.000 0.00 0.00 34.60 2.44
3152 3229 6.015688 ACATGCCATGACATTCAATTCCTATC 60.016 38.462 12.53 0.00 0.00 2.08
3383 3774 2.546899 TGGCTGTATGACTGTAAGGGT 58.453 47.619 0.00 0.00 39.30 4.34
3424 3815 6.923508 CCTACTGCCTTTTGTTTTAAGGAAAG 59.076 38.462 5.85 4.93 44.01 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.257936 CAAGTGACACACGTGCAGTAC 59.742 52.381 17.22 10.31 37.09 2.73
5 6 1.134936 ACAAGTGACACACGTGCAGTA 60.135 47.619 17.22 0.00 45.03 2.74
6 7 0.391130 ACAAGTGACACACGTGCAGT 60.391 50.000 17.22 15.02 45.03 4.40
7 8 0.301687 GACAAGTGACACACGTGCAG 59.698 55.000 17.22 11.45 45.03 4.41
8 9 1.417577 CGACAAGTGACACACGTGCA 61.418 55.000 17.22 2.33 45.03 4.57
9 10 1.272715 CGACAAGTGACACACGTGC 59.727 57.895 17.22 0.00 45.03 5.34
10 11 1.272715 GCGACAAGTGACACACGTG 59.727 57.895 15.48 15.48 46.18 4.49
11 12 0.738063 TTGCGACAAGTGACACACGT 60.738 50.000 8.59 3.90 39.64 4.49
12 13 0.043053 CTTGCGACAAGTGACACACG 60.043 55.000 8.59 8.89 39.64 4.49
13 14 1.258982 CTCTTGCGACAAGTGACACAC 59.741 52.381 8.59 0.00 34.10 3.82
14 15 1.136110 TCTCTTGCGACAAGTGACACA 59.864 47.619 8.59 0.08 0.00 3.72
15 16 1.789464 CTCTCTTGCGACAAGTGACAC 59.211 52.381 15.83 0.00 0.00 3.67
16 17 1.409064 ACTCTCTTGCGACAAGTGACA 59.591 47.619 15.83 0.92 0.00 3.58
17 18 2.141535 ACTCTCTTGCGACAAGTGAC 57.858 50.000 15.83 0.00 0.00 3.67
18 19 2.890808 AACTCTCTTGCGACAAGTGA 57.109 45.000 17.27 17.27 0.00 3.41
19 20 3.303395 GGAAAACTCTCTTGCGACAAGTG 60.303 47.826 15.83 14.07 0.00 3.16
20 21 2.872858 GGAAAACTCTCTTGCGACAAGT 59.127 45.455 15.83 0.00 0.00 3.16
21 22 2.224314 GGGAAAACTCTCTTGCGACAAG 59.776 50.000 11.78 11.78 0.00 3.16
22 23 2.158813 AGGGAAAACTCTCTTGCGACAA 60.159 45.455 0.00 0.00 0.00 3.18
23 24 1.416401 AGGGAAAACTCTCTTGCGACA 59.584 47.619 0.00 0.00 0.00 4.35
24 25 2.171341 AGGGAAAACTCTCTTGCGAC 57.829 50.000 0.00 0.00 0.00 5.19
25 26 2.930826 AAGGGAAAACTCTCTTGCGA 57.069 45.000 0.00 0.00 0.00 5.10
26 27 3.990318 AAAAGGGAAAACTCTCTTGCG 57.010 42.857 0.00 0.00 0.00 4.85
67 68 9.614792 ACGCTAGGATTAGAAGATAAAACATTT 57.385 29.630 0.00 0.00 0.00 2.32
68 69 9.614792 AACGCTAGGATTAGAAGATAAAACATT 57.385 29.630 0.00 0.00 0.00 2.71
69 70 9.046296 CAACGCTAGGATTAGAAGATAAAACAT 57.954 33.333 0.00 0.00 0.00 2.71
70 71 8.255206 TCAACGCTAGGATTAGAAGATAAAACA 58.745 33.333 0.00 0.00 0.00 2.83
71 72 8.644318 TCAACGCTAGGATTAGAAGATAAAAC 57.356 34.615 0.00 0.00 0.00 2.43
72 73 8.692710 TCTCAACGCTAGGATTAGAAGATAAAA 58.307 33.333 0.00 0.00 0.00 1.52
73 74 8.234136 TCTCAACGCTAGGATTAGAAGATAAA 57.766 34.615 0.00 0.00 0.00 1.40
74 75 7.818997 TCTCAACGCTAGGATTAGAAGATAA 57.181 36.000 0.00 0.00 0.00 1.75
75 76 7.885922 AGATCTCAACGCTAGGATTAGAAGATA 59.114 37.037 0.00 0.00 0.00 1.98
76 77 6.719370 AGATCTCAACGCTAGGATTAGAAGAT 59.281 38.462 0.00 0.00 0.00 2.40
77 78 6.065374 AGATCTCAACGCTAGGATTAGAAGA 58.935 40.000 0.00 0.00 0.00 2.87
78 79 6.325919 AGATCTCAACGCTAGGATTAGAAG 57.674 41.667 0.00 0.00 0.00 2.85
79 80 6.321435 TGAAGATCTCAACGCTAGGATTAGAA 59.679 38.462 0.00 0.00 0.00 2.10
80 81 5.828328 TGAAGATCTCAACGCTAGGATTAGA 59.172 40.000 0.00 0.00 0.00 2.10
81 82 6.078202 TGAAGATCTCAACGCTAGGATTAG 57.922 41.667 0.00 0.00 0.00 1.73
82 83 6.465439 TTGAAGATCTCAACGCTAGGATTA 57.535 37.500 0.00 0.00 39.20 1.75
83 84 5.344743 TTGAAGATCTCAACGCTAGGATT 57.655 39.130 0.00 0.00 39.20 3.01
84 85 5.344743 TTTGAAGATCTCAACGCTAGGAT 57.655 39.130 0.00 0.00 43.90 3.24
85 86 4.801330 TTTGAAGATCTCAACGCTAGGA 57.199 40.909 0.00 0.00 43.90 2.94
86 87 4.932200 AGTTTTGAAGATCTCAACGCTAGG 59.068 41.667 0.00 0.00 43.90 3.02
87 88 7.030165 TCTAGTTTTGAAGATCTCAACGCTAG 58.970 38.462 20.90 20.90 43.90 3.42
88 89 6.920817 TCTAGTTTTGAAGATCTCAACGCTA 58.079 36.000 0.00 6.58 43.90 4.26
89 90 5.784177 TCTAGTTTTGAAGATCTCAACGCT 58.216 37.500 0.00 5.86 43.90 5.07
90 91 6.237969 GGATCTAGTTTTGAAGATCTCAACGC 60.238 42.308 11.05 0.00 43.90 4.84
91 92 6.256757 GGGATCTAGTTTTGAAGATCTCAACG 59.743 42.308 11.05 0.00 43.90 4.10
92 93 6.540551 GGGGATCTAGTTTTGAAGATCTCAAC 59.459 42.308 12.82 0.00 43.90 3.18
93 94 6.445139 AGGGGATCTAGTTTTGAAGATCTCAA 59.555 38.462 12.82 0.00 42.48 3.02
94 95 5.966935 AGGGGATCTAGTTTTGAAGATCTCA 59.033 40.000 12.82 0.00 39.37 3.27
95 96 6.126911 ACAGGGGATCTAGTTTTGAAGATCTC 60.127 42.308 11.05 7.74 37.51 2.75
96 97 5.728741 ACAGGGGATCTAGTTTTGAAGATCT 59.271 40.000 11.05 0.00 37.77 2.75
97 98 5.995446 ACAGGGGATCTAGTTTTGAAGATC 58.005 41.667 4.15 4.15 37.15 2.75
98 99 6.012508 TCAACAGGGGATCTAGTTTTGAAGAT 60.013 38.462 0.00 0.00 0.00 2.40
99 100 5.309543 TCAACAGGGGATCTAGTTTTGAAGA 59.690 40.000 0.00 0.00 0.00 2.87
100 101 5.560724 TCAACAGGGGATCTAGTTTTGAAG 58.439 41.667 0.00 0.00 0.00 3.02
101 102 5.576563 TCAACAGGGGATCTAGTTTTGAA 57.423 39.130 0.00 0.00 0.00 2.69
102 103 5.779241 ATCAACAGGGGATCTAGTTTTGA 57.221 39.130 0.00 0.00 0.00 2.69
103 104 6.058183 CCTATCAACAGGGGATCTAGTTTTG 58.942 44.000 0.00 0.00 31.47 2.44
104 105 5.731678 ACCTATCAACAGGGGATCTAGTTTT 59.268 40.000 0.00 0.00 40.29 2.43
105 106 5.289510 ACCTATCAACAGGGGATCTAGTTT 58.710 41.667 0.00 0.00 40.29 2.66
106 107 4.897051 ACCTATCAACAGGGGATCTAGTT 58.103 43.478 0.00 0.00 40.29 2.24
107 108 4.561254 ACCTATCAACAGGGGATCTAGT 57.439 45.455 0.00 0.00 40.29 2.57
108 109 5.896073 AAACCTATCAACAGGGGATCTAG 57.104 43.478 0.00 0.00 40.29 2.43
109 110 5.491078 ACAAAACCTATCAACAGGGGATCTA 59.509 40.000 0.00 0.00 40.29 1.98
110 111 4.292306 ACAAAACCTATCAACAGGGGATCT 59.708 41.667 0.00 0.00 40.29 2.75
111 112 4.600062 ACAAAACCTATCAACAGGGGATC 58.400 43.478 0.00 0.00 40.29 3.36
112 113 4.675063 ACAAAACCTATCAACAGGGGAT 57.325 40.909 0.00 0.00 40.29 3.85
113 114 4.141135 TCAACAAAACCTATCAACAGGGGA 60.141 41.667 0.00 0.00 40.29 4.81
114 115 4.148838 TCAACAAAACCTATCAACAGGGG 58.851 43.478 0.00 0.00 40.29 4.79
115 116 5.982890 ATCAACAAAACCTATCAACAGGG 57.017 39.130 0.00 0.00 40.29 4.45
116 117 8.661352 AAAAATCAACAAAACCTATCAACAGG 57.339 30.769 0.00 0.00 41.87 4.00
199 200 7.338196 TGGTATTGCTCTATCGGAAATGAAAAA 59.662 33.333 0.00 0.00 0.00 1.94
200 201 6.826231 TGGTATTGCTCTATCGGAAATGAAAA 59.174 34.615 0.00 0.00 0.00 2.29
201 202 6.353323 TGGTATTGCTCTATCGGAAATGAAA 58.647 36.000 0.00 0.00 0.00 2.69
202 203 5.924356 TGGTATTGCTCTATCGGAAATGAA 58.076 37.500 0.00 0.00 0.00 2.57
203 204 5.545063 TGGTATTGCTCTATCGGAAATGA 57.455 39.130 0.00 0.00 0.00 2.57
204 205 5.391310 GCATGGTATTGCTCTATCGGAAATG 60.391 44.000 0.00 0.00 39.57 2.32
205 206 4.697352 GCATGGTATTGCTCTATCGGAAAT 59.303 41.667 0.00 0.00 39.57 2.17
206 207 4.065088 GCATGGTATTGCTCTATCGGAAA 58.935 43.478 0.00 0.00 39.57 3.13
207 208 3.557054 GGCATGGTATTGCTCTATCGGAA 60.557 47.826 0.00 0.00 42.38 4.30
208 209 2.028112 GGCATGGTATTGCTCTATCGGA 60.028 50.000 0.00 0.00 42.38 4.55
209 210 2.027745 AGGCATGGTATTGCTCTATCGG 60.028 50.000 0.00 0.00 42.38 4.18
210 211 3.056250 AGAGGCATGGTATTGCTCTATCG 60.056 47.826 0.00 0.00 42.38 2.92
211 212 4.502962 GAGAGGCATGGTATTGCTCTATC 58.497 47.826 0.00 0.00 42.38 2.08
212 213 3.056250 CGAGAGGCATGGTATTGCTCTAT 60.056 47.826 0.00 0.00 42.38 1.98
213 214 2.297315 CGAGAGGCATGGTATTGCTCTA 59.703 50.000 0.00 0.00 42.38 2.43
214 215 1.069823 CGAGAGGCATGGTATTGCTCT 59.930 52.381 0.00 0.00 42.38 4.09
215 216 1.202580 ACGAGAGGCATGGTATTGCTC 60.203 52.381 0.00 0.00 42.38 4.26
216 217 0.833287 ACGAGAGGCATGGTATTGCT 59.167 50.000 0.00 0.00 42.38 3.91
217 218 0.940126 CACGAGAGGCATGGTATTGC 59.060 55.000 0.00 0.00 42.01 3.56
218 219 1.138859 TCCACGAGAGGCATGGTATTG 59.861 52.381 0.00 0.00 34.89 1.90
219 220 1.496060 TCCACGAGAGGCATGGTATT 58.504 50.000 0.00 0.00 34.89 1.89
220 221 1.414181 CTTCCACGAGAGGCATGGTAT 59.586 52.381 0.00 0.00 34.89 2.73
221 222 0.824109 CTTCCACGAGAGGCATGGTA 59.176 55.000 0.00 0.00 34.89 3.25
222 223 1.599047 CTTCCACGAGAGGCATGGT 59.401 57.895 0.00 0.00 34.89 3.55
223 224 1.817099 GCTTCCACGAGAGGCATGG 60.817 63.158 8.88 0.00 46.54 3.66
224 225 3.805267 GCTTCCACGAGAGGCATG 58.195 61.111 8.88 0.00 46.54 4.06
228 229 1.394917 CGATTTTGCTTCCACGAGAGG 59.605 52.381 0.00 0.00 0.00 3.69
229 230 2.069273 ACGATTTTGCTTCCACGAGAG 58.931 47.619 0.00 0.00 0.00 3.20
230 231 2.163818 ACGATTTTGCTTCCACGAGA 57.836 45.000 0.00 0.00 0.00 4.04
231 232 2.093783 GGTACGATTTTGCTTCCACGAG 59.906 50.000 0.00 0.00 0.00 4.18
232 233 2.070783 GGTACGATTTTGCTTCCACGA 58.929 47.619 0.00 0.00 0.00 4.35
233 234 2.073816 AGGTACGATTTTGCTTCCACG 58.926 47.619 0.00 0.00 0.00 4.94
234 235 3.335579 AGAGGTACGATTTTGCTTCCAC 58.664 45.455 0.00 0.00 0.00 4.02
235 236 3.007506 TGAGAGGTACGATTTTGCTTCCA 59.992 43.478 0.00 0.00 0.00 3.53
236 237 3.596214 TGAGAGGTACGATTTTGCTTCC 58.404 45.455 0.00 0.00 0.00 3.46
237 238 4.034510 CCATGAGAGGTACGATTTTGCTTC 59.965 45.833 0.00 0.00 0.00 3.86
238 239 3.941483 CCATGAGAGGTACGATTTTGCTT 59.059 43.478 0.00 0.00 0.00 3.91
239 240 3.197766 TCCATGAGAGGTACGATTTTGCT 59.802 43.478 0.00 0.00 0.00 3.91
240 241 3.531538 TCCATGAGAGGTACGATTTTGC 58.468 45.455 0.00 0.00 0.00 3.68
241 242 6.494893 TTTTCCATGAGAGGTACGATTTTG 57.505 37.500 0.00 0.00 0.00 2.44
271 272 7.149307 TCTCGGAAACAAGAAAAAGTGTTTTT 58.851 30.769 3.53 0.00 45.53 1.94
272 273 6.683715 TCTCGGAAACAAGAAAAAGTGTTTT 58.316 32.000 3.53 0.00 45.53 2.43
274 275 5.163652 CCTCTCGGAAACAAGAAAAAGTGTT 60.164 40.000 0.00 0.00 39.63 3.32
275 276 4.335594 CCTCTCGGAAACAAGAAAAAGTGT 59.664 41.667 0.00 0.00 0.00 3.55
276 277 4.789802 GCCTCTCGGAAACAAGAAAAAGTG 60.790 45.833 0.00 0.00 0.00 3.16
277 278 3.315470 GCCTCTCGGAAACAAGAAAAAGT 59.685 43.478 0.00 0.00 0.00 2.66
278 279 3.315191 TGCCTCTCGGAAACAAGAAAAAG 59.685 43.478 0.00 0.00 0.00 2.27
279 280 3.066203 GTGCCTCTCGGAAACAAGAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
280 281 2.616842 GTGCCTCTCGGAAACAAGAAAA 59.383 45.455 0.00 0.00 0.00 2.29
281 282 2.218603 GTGCCTCTCGGAAACAAGAAA 58.781 47.619 0.00 0.00 0.00 2.52
282 283 1.872237 CGTGCCTCTCGGAAACAAGAA 60.872 52.381 0.00 0.00 0.00 2.52
283 284 0.319555 CGTGCCTCTCGGAAACAAGA 60.320 55.000 0.00 0.00 0.00 3.02
284 285 2.153913 CGTGCCTCTCGGAAACAAG 58.846 57.895 0.00 0.00 0.00 3.16
285 286 4.354155 CGTGCCTCTCGGAAACAA 57.646 55.556 0.00 0.00 0.00 2.83
309 310 0.375106 GATTTTGCTTCCGCGAGAGG 59.625 55.000 8.23 4.88 39.65 3.69
310 311 0.025513 CGATTTTGCTTCCGCGAGAG 59.974 55.000 8.23 5.93 39.65 3.20
311 312 0.669318 ACGATTTTGCTTCCGCGAGA 60.669 50.000 8.23 0.00 39.65 4.04
312 313 0.519175 CACGATTTTGCTTCCGCGAG 60.519 55.000 8.23 0.00 39.65 5.03
313 314 1.495509 CACGATTTTGCTTCCGCGA 59.504 52.632 8.23 0.00 39.65 5.87
314 315 2.145905 GCACGATTTTGCTTCCGCG 61.146 57.895 0.00 0.00 39.59 6.46
315 316 1.801512 GGCACGATTTTGCTTCCGC 60.802 57.895 0.00 0.00 42.56 5.54
316 317 0.179189 GAGGCACGATTTTGCTTCCG 60.179 55.000 0.00 0.00 41.54 4.30
317 318 1.131315 GAGAGGCACGATTTTGCTTCC 59.869 52.381 4.54 0.00 46.96 3.46
318 319 1.806542 TGAGAGGCACGATTTTGCTTC 59.193 47.619 0.28 0.28 46.31 3.86
319 320 1.896220 TGAGAGGCACGATTTTGCTT 58.104 45.000 0.00 0.00 42.56 3.91
320 321 2.119801 ATGAGAGGCACGATTTTGCT 57.880 45.000 0.00 0.00 42.56 3.91
321 322 4.355543 TTTATGAGAGGCACGATTTTGC 57.644 40.909 0.00 0.00 42.18 3.68
322 323 5.123820 TCCTTTTATGAGAGGCACGATTTTG 59.876 40.000 0.00 0.00 32.93 2.44
323 324 5.253330 TCCTTTTATGAGAGGCACGATTTT 58.747 37.500 0.00 0.00 32.93 1.82
324 325 4.843728 TCCTTTTATGAGAGGCACGATTT 58.156 39.130 0.00 0.00 32.93 2.17
325 326 4.487714 TCCTTTTATGAGAGGCACGATT 57.512 40.909 0.00 0.00 32.93 3.34
326 327 4.487714 TTCCTTTTATGAGAGGCACGAT 57.512 40.909 0.00 0.00 32.93 3.73
327 328 3.973206 TTCCTTTTATGAGAGGCACGA 57.027 42.857 0.00 0.00 32.93 4.35
328 329 5.371115 TTTTTCCTTTTATGAGAGGCACG 57.629 39.130 0.00 0.00 32.93 5.34
365 366 2.032426 GGTGCCTCTCGAAAACGAAAAA 59.968 45.455 0.00 0.00 0.00 1.94
366 367 1.600485 GGTGCCTCTCGAAAACGAAAA 59.400 47.619 0.00 0.00 0.00 2.29
367 368 1.223187 GGTGCCTCTCGAAAACGAAA 58.777 50.000 0.00 0.00 0.00 3.46
368 369 0.942410 CGGTGCCTCTCGAAAACGAA 60.942 55.000 0.00 0.00 0.00 3.85
369 370 1.372499 CGGTGCCTCTCGAAAACGA 60.372 57.895 0.00 0.00 0.00 3.85
370 371 3.011760 GCGGTGCCTCTCGAAAACG 62.012 63.158 0.00 0.00 0.00 3.60
371 372 2.677979 GGCGGTGCCTCTCGAAAAC 61.678 63.158 0.00 0.00 46.69 2.43
372 373 2.358247 GGCGGTGCCTCTCGAAAA 60.358 61.111 0.00 0.00 46.69 2.29
388 389 2.805353 CTTCCGCGAGTGTCACGG 60.805 66.667 8.23 0.00 42.97 4.94
389 390 3.470567 GCTTCCGCGAGTGTCACG 61.471 66.667 8.23 0.00 0.00 4.35
390 391 1.495584 TTTGCTTCCGCGAGTGTCAC 61.496 55.000 8.23 0.00 39.65 3.67
391 392 0.812014 TTTTGCTTCCGCGAGTGTCA 60.812 50.000 8.23 0.00 39.65 3.58
392 393 0.384353 GTTTTGCTTCCGCGAGTGTC 60.384 55.000 8.23 0.00 39.65 3.67
393 394 1.647084 GTTTTGCTTCCGCGAGTGT 59.353 52.632 8.23 0.00 39.65 3.55
394 395 1.082104 GGTTTTGCTTCCGCGAGTG 60.082 57.895 8.23 0.00 39.65 3.51
395 396 2.604174 CGGTTTTGCTTCCGCGAGT 61.604 57.895 8.23 0.00 40.28 4.18
396 397 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
401 402 1.531578 GAGAGACACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
402 403 1.192534 CGAGAGACACGGTTTTGCTTC 59.807 52.381 0.00 0.00 0.00 3.86
403 404 1.217882 CGAGAGACACGGTTTTGCTT 58.782 50.000 0.00 0.00 0.00 3.91
404 405 0.104304 ACGAGAGACACGGTTTTGCT 59.896 50.000 0.00 0.00 34.93 3.91
405 406 0.232303 CACGAGAGACACGGTTTTGC 59.768 55.000 0.00 0.00 34.93 3.68
406 407 1.787155 CTCACGAGAGACACGGTTTTG 59.213 52.381 3.49 0.00 44.98 2.44
407 408 1.679680 TCTCACGAGAGACACGGTTTT 59.320 47.619 8.60 0.00 45.73 2.43
408 409 1.315690 TCTCACGAGAGACACGGTTT 58.684 50.000 8.60 0.00 45.73 3.27
409 410 3.016997 TCTCACGAGAGACACGGTT 57.983 52.632 8.60 0.00 45.73 4.44
410 411 4.794199 TCTCACGAGAGACACGGT 57.206 55.556 8.60 0.00 45.73 4.83
440 441 8.925700 GCCTCTCGAAAATGAAAAATATGTTTT 58.074 29.630 0.00 0.00 39.15 2.43
441 442 8.087750 TGCCTCTCGAAAATGAAAAATATGTTT 58.912 29.630 0.00 0.00 0.00 2.83
442 443 7.542130 GTGCCTCTCGAAAATGAAAAATATGTT 59.458 33.333 0.00 0.00 0.00 2.71
443 444 7.029563 GTGCCTCTCGAAAATGAAAAATATGT 58.970 34.615 0.00 0.00 0.00 2.29
444 445 6.195244 CGTGCCTCTCGAAAATGAAAAATATG 59.805 38.462 0.00 0.00 0.00 1.78
445 446 6.258160 CGTGCCTCTCGAAAATGAAAAATAT 58.742 36.000 0.00 0.00 0.00 1.28
446 447 5.391523 CCGTGCCTCTCGAAAATGAAAAATA 60.392 40.000 0.00 0.00 0.00 1.40
447 448 4.475944 CGTGCCTCTCGAAAATGAAAAAT 58.524 39.130 0.00 0.00 0.00 1.82
448 449 3.304391 CCGTGCCTCTCGAAAATGAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
449 450 2.225491 CCGTGCCTCTCGAAAATGAAAA 59.775 45.455 0.00 0.00 0.00 2.29
450 451 1.804151 CCGTGCCTCTCGAAAATGAAA 59.196 47.619 0.00 0.00 0.00 2.69
451 452 1.438651 CCGTGCCTCTCGAAAATGAA 58.561 50.000 0.00 0.00 0.00 2.57
452 453 1.019278 GCCGTGCCTCTCGAAAATGA 61.019 55.000 0.00 0.00 0.00 2.57
453 454 1.425428 GCCGTGCCTCTCGAAAATG 59.575 57.895 0.00 0.00 0.00 2.32
454 455 1.745489 GGCCGTGCCTCTCGAAAAT 60.745 57.895 7.58 0.00 46.69 1.82
455 456 2.358247 GGCCGTGCCTCTCGAAAA 60.358 61.111 7.58 0.00 46.69 2.29
472 473 3.793144 GCTTCCGCAAGAGGCACG 61.793 66.667 0.00 0.00 46.54 5.34
484 485 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
485 486 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
486 487 0.465460 TGAGAGGCACGGTTTTGCTT 60.465 50.000 0.00 0.00 42.56 3.91
487 488 0.250901 ATGAGAGGCACGGTTTTGCT 60.251 50.000 0.00 0.00 42.56 3.91
488 489 0.109597 CATGAGAGGCACGGTTTTGC 60.110 55.000 0.00 0.00 42.18 3.68
489 490 1.522668 TCATGAGAGGCACGGTTTTG 58.477 50.000 0.00 0.00 0.00 2.44
490 491 2.270352 TTCATGAGAGGCACGGTTTT 57.730 45.000 0.00 0.00 0.00 2.43
491 492 2.154462 CTTTCATGAGAGGCACGGTTT 58.846 47.619 5.33 0.00 0.00 3.27
492 493 1.611673 CCTTTCATGAGAGGCACGGTT 60.612 52.381 18.63 0.00 0.00 4.44
493 494 0.036010 CCTTTCATGAGAGGCACGGT 60.036 55.000 18.63 0.00 0.00 4.83
494 495 0.250234 TCCTTTCATGAGAGGCACGG 59.750 55.000 24.34 4.93 32.93 4.94
495 496 2.099141 TTCCTTTCATGAGAGGCACG 57.901 50.000 24.34 4.42 32.93 5.34
496 497 4.853924 TTTTTCCTTTCATGAGAGGCAC 57.146 40.909 24.34 0.00 32.93 5.01
529 530 2.266554 CAAGGTTTTGCTTGTGCGAAA 58.733 42.857 0.00 0.00 46.81 3.46
530 531 1.919918 CAAGGTTTTGCTTGTGCGAA 58.080 45.000 0.00 0.00 43.34 4.70
531 532 3.639162 CAAGGTTTTGCTTGTGCGA 57.361 47.368 0.00 0.00 43.34 5.10
540 541 1.207593 CGCGAGAGGCAAGGTTTTG 59.792 57.895 0.00 0.00 43.84 2.44
541 542 0.534203 TTCGCGAGAGGCAAGGTTTT 60.534 50.000 9.59 0.00 43.84 2.43
542 543 0.534203 TTTCGCGAGAGGCAAGGTTT 60.534 50.000 9.59 0.00 43.84 3.27
543 544 0.951040 CTTTCGCGAGAGGCAAGGTT 60.951 55.000 18.35 0.00 43.84 3.50
544 545 1.374758 CTTTCGCGAGAGGCAAGGT 60.375 57.895 18.35 0.00 43.84 3.50
545 546 2.744768 GCTTTCGCGAGAGGCAAGG 61.745 63.158 25.84 4.91 43.84 3.61
546 547 1.568612 TTGCTTTCGCGAGAGGCAAG 61.569 55.000 28.14 21.33 46.96 4.01
547 548 2.030412 TGCTTTCGCGAGAGGCAA 59.970 55.556 25.84 9.27 43.67 4.52
548 549 1.163420 TTTTGCTTTCGCGAGAGGCA 61.163 50.000 25.84 23.78 44.45 4.75
549 550 0.169009 ATTTTGCTTTCGCGAGAGGC 59.831 50.000 25.84 21.76 43.69 4.70
550 551 1.527793 CGATTTTGCTTTCGCGAGAGG 60.528 52.381 25.84 13.55 43.69 3.69
551 552 1.390123 TCGATTTTGCTTTCGCGAGAG 59.610 47.619 21.42 21.42 43.69 3.20
552 553 1.424403 TCGATTTTGCTTTCGCGAGA 58.576 45.000 9.59 3.35 39.65 4.04
553 554 1.898709 GTTCGATTTTGCTTTCGCGAG 59.101 47.619 9.59 0.00 39.65 5.03
554 555 1.399215 GGTTCGATTTTGCTTTCGCGA 60.399 47.619 3.71 3.71 39.65 5.87
555 556 0.974836 GGTTCGATTTTGCTTTCGCG 59.025 50.000 0.00 0.00 39.65 5.87
556 557 2.242564 GAGGTTCGATTTTGCTTTCGC 58.757 47.619 0.00 0.00 35.39 4.70
557 558 2.484264 AGGAGGTTCGATTTTGCTTTCG 59.516 45.455 0.00 0.00 36.72 3.46
558 559 3.119814 GGAGGAGGTTCGATTTTGCTTTC 60.120 47.826 0.00 0.00 0.00 2.62
559 560 2.820197 GGAGGAGGTTCGATTTTGCTTT 59.180 45.455 0.00 0.00 0.00 3.51
560 561 2.437413 GGAGGAGGTTCGATTTTGCTT 58.563 47.619 0.00 0.00 0.00 3.91
561 562 1.340114 GGGAGGAGGTTCGATTTTGCT 60.340 52.381 0.00 0.00 0.00 3.91
562 563 1.095600 GGGAGGAGGTTCGATTTTGC 58.904 55.000 0.00 0.00 0.00 3.68
563 564 1.338769 ACGGGAGGAGGTTCGATTTTG 60.339 52.381 0.00 0.00 0.00 2.44
564 565 0.981943 ACGGGAGGAGGTTCGATTTT 59.018 50.000 0.00 0.00 0.00 1.82
565 566 1.755380 CTACGGGAGGAGGTTCGATTT 59.245 52.381 0.00 0.00 37.07 2.17
566 567 1.064166 TCTACGGGAGGAGGTTCGATT 60.064 52.381 0.00 0.00 42.67 3.34
567 568 0.549950 TCTACGGGAGGAGGTTCGAT 59.450 55.000 0.00 0.00 42.67 3.59
568 569 0.329261 TTCTACGGGAGGAGGTTCGA 59.671 55.000 0.00 0.00 42.67 3.71
569 570 0.739561 CTTCTACGGGAGGAGGTTCG 59.260 60.000 0.00 0.00 42.67 3.95
570 571 2.140839 TCTTCTACGGGAGGAGGTTC 57.859 55.000 0.00 0.00 42.67 3.62
571 572 2.617840 TTCTTCTACGGGAGGAGGTT 57.382 50.000 0.00 0.00 42.67 3.50
572 573 2.617840 TTTCTTCTACGGGAGGAGGT 57.382 50.000 0.00 0.00 42.67 3.85
573 574 3.975168 TTTTTCTTCTACGGGAGGAGG 57.025 47.619 0.00 0.00 42.67 4.30
602 603 9.495754 CTTTTGGATTTATTTTTGCACGAAAAA 57.504 25.926 0.66 0.00 45.44 1.94
603 604 8.883731 TCTTTTGGATTTATTTTTGCACGAAAA 58.116 25.926 0.00 0.00 33.46 2.29
604 605 8.425577 TCTTTTGGATTTATTTTTGCACGAAA 57.574 26.923 0.00 0.00 0.00 3.46
605 606 8.600449 ATCTTTTGGATTTATTTTTGCACGAA 57.400 26.923 0.00 0.00 0.00 3.85
606 607 9.698309 TTATCTTTTGGATTTATTTTTGCACGA 57.302 25.926 0.00 0.00 35.98 4.35
607 608 9.956797 CTTATCTTTTGGATTTATTTTTGCACG 57.043 29.630 0.00 0.00 35.98 5.34
616 617 9.681062 TCGGTCTTTCTTATCTTTTGGATTTAT 57.319 29.630 0.00 0.00 35.98 1.40
617 618 9.681062 ATCGGTCTTTCTTATCTTTTGGATTTA 57.319 29.630 0.00 0.00 35.98 1.40
618 619 7.996098 TCGGTCTTTCTTATCTTTTGGATTT 57.004 32.000 0.00 0.00 35.98 2.17
619 620 7.611855 ACATCGGTCTTTCTTATCTTTTGGATT 59.388 33.333 0.00 0.00 35.98 3.01
620 621 7.112779 ACATCGGTCTTTCTTATCTTTTGGAT 58.887 34.615 0.00 0.00 38.38 3.41
621 622 6.472887 ACATCGGTCTTTCTTATCTTTTGGA 58.527 36.000 0.00 0.00 0.00 3.53
622 623 6.743575 ACATCGGTCTTTCTTATCTTTTGG 57.256 37.500 0.00 0.00 0.00 3.28
626 627 9.667107 TGATTTTACATCGGTCTTTCTTATCTT 57.333 29.630 0.00 0.00 0.00 2.40
627 628 9.667107 TTGATTTTACATCGGTCTTTCTTATCT 57.333 29.630 0.00 0.00 0.00 1.98
631 632 9.463443 CTTTTTGATTTTACATCGGTCTTTCTT 57.537 29.630 0.00 0.00 0.00 2.52
632 633 7.595130 GCTTTTTGATTTTACATCGGTCTTTCT 59.405 33.333 0.00 0.00 0.00 2.52
633 634 7.148804 GGCTTTTTGATTTTACATCGGTCTTTC 60.149 37.037 0.00 0.00 0.00 2.62
634 635 6.645003 GGCTTTTTGATTTTACATCGGTCTTT 59.355 34.615 0.00 0.00 0.00 2.52
635 636 6.156519 GGCTTTTTGATTTTACATCGGTCTT 58.843 36.000 0.00 0.00 0.00 3.01
636 637 5.619086 CGGCTTTTTGATTTTACATCGGTCT 60.619 40.000 0.00 0.00 0.00 3.85
637 638 4.557301 CGGCTTTTTGATTTTACATCGGTC 59.443 41.667 0.00 0.00 0.00 4.79
638 639 4.216687 TCGGCTTTTTGATTTTACATCGGT 59.783 37.500 0.00 0.00 0.00 4.69
639 640 4.728534 TCGGCTTTTTGATTTTACATCGG 58.271 39.130 0.00 0.00 0.00 4.18
640 641 6.083630 TCTTCGGCTTTTTGATTTTACATCG 58.916 36.000 0.00 0.00 0.00 3.84
641 642 7.867445 TTCTTCGGCTTTTTGATTTTACATC 57.133 32.000 0.00 0.00 0.00 3.06
642 643 7.708752 TGTTTCTTCGGCTTTTTGATTTTACAT 59.291 29.630 0.00 0.00 0.00 2.29
643 644 7.036220 TGTTTCTTCGGCTTTTTGATTTTACA 58.964 30.769 0.00 0.00 0.00 2.41
644 645 7.458038 TGTTTCTTCGGCTTTTTGATTTTAC 57.542 32.000 0.00 0.00 0.00 2.01
645 646 8.480643 TTTGTTTCTTCGGCTTTTTGATTTTA 57.519 26.923 0.00 0.00 0.00 1.52
646 647 6.976636 TTGTTTCTTCGGCTTTTTGATTTT 57.023 29.167 0.00 0.00 0.00 1.82
647 648 6.816140 TCTTTGTTTCTTCGGCTTTTTGATTT 59.184 30.769 0.00 0.00 0.00 2.17
648 649 6.337356 TCTTTGTTTCTTCGGCTTTTTGATT 58.663 32.000 0.00 0.00 0.00 2.57
649 650 5.901552 TCTTTGTTTCTTCGGCTTTTTGAT 58.098 33.333 0.00 0.00 0.00 2.57
650 651 5.317733 TCTTTGTTTCTTCGGCTTTTTGA 57.682 34.783 0.00 0.00 0.00 2.69
651 652 6.401955 TTTCTTTGTTTCTTCGGCTTTTTG 57.598 33.333 0.00 0.00 0.00 2.44
652 653 7.428282 TTTTTCTTTGTTTCTTCGGCTTTTT 57.572 28.000 0.00 0.00 0.00 1.94
673 674 8.331742 CGTGTTTTTGGCTTTGTACATATTTTT 58.668 29.630 0.00 0.00 0.00 1.94
674 675 7.492994 ACGTGTTTTTGGCTTTGTACATATTTT 59.507 29.630 0.00 0.00 0.00 1.82
675 676 6.981559 ACGTGTTTTTGGCTTTGTACATATTT 59.018 30.769 0.00 0.00 0.00 1.40
676 677 6.419413 CACGTGTTTTTGGCTTTGTACATATT 59.581 34.615 7.58 0.00 0.00 1.28
677 678 5.918011 CACGTGTTTTTGGCTTTGTACATAT 59.082 36.000 7.58 0.00 0.00 1.78
678 679 5.066117 TCACGTGTTTTTGGCTTTGTACATA 59.934 36.000 16.51 0.00 0.00 2.29
679 680 4.109050 CACGTGTTTTTGGCTTTGTACAT 58.891 39.130 7.58 0.00 0.00 2.29
680 681 3.190744 TCACGTGTTTTTGGCTTTGTACA 59.809 39.130 16.51 0.00 0.00 2.90
681 682 3.760537 TCACGTGTTTTTGGCTTTGTAC 58.239 40.909 16.51 0.00 0.00 2.90
682 683 4.436242 TTCACGTGTTTTTGGCTTTGTA 57.564 36.364 16.51 0.00 0.00 2.41
683 684 3.305398 TTCACGTGTTTTTGGCTTTGT 57.695 38.095 16.51 0.00 0.00 2.83
684 685 4.653806 TTTTCACGTGTTTTTGGCTTTG 57.346 36.364 16.51 0.00 0.00 2.77
712 713 8.512138 CGCTCCCTTCGGATTTTATTTTTATAT 58.488 33.333 0.00 0.00 37.60 0.86
713 714 7.499895 ACGCTCCCTTCGGATTTTATTTTTATA 59.500 33.333 0.00 0.00 37.60 0.98
714 715 6.320418 ACGCTCCCTTCGGATTTTATTTTTAT 59.680 34.615 0.00 0.00 37.60 1.40
715 716 5.648960 ACGCTCCCTTCGGATTTTATTTTTA 59.351 36.000 0.00 0.00 37.60 1.52
716 717 4.461431 ACGCTCCCTTCGGATTTTATTTTT 59.539 37.500 0.00 0.00 37.60 1.94
717 718 4.014406 ACGCTCCCTTCGGATTTTATTTT 58.986 39.130 0.00 0.00 37.60 1.82
718 719 3.617284 ACGCTCCCTTCGGATTTTATTT 58.383 40.909 0.00 0.00 37.60 1.40
719 720 3.203716 GACGCTCCCTTCGGATTTTATT 58.796 45.455 0.00 0.00 37.60 1.40
720 721 2.484947 GGACGCTCCCTTCGGATTTTAT 60.485 50.000 0.00 0.00 37.60 1.40
721 722 1.134610 GGACGCTCCCTTCGGATTTTA 60.135 52.381 0.00 0.00 37.60 1.52
722 723 0.392595 GGACGCTCCCTTCGGATTTT 60.393 55.000 0.00 0.00 37.60 1.82
723 724 1.221021 GGACGCTCCCTTCGGATTT 59.779 57.895 0.00 0.00 37.60 2.17
724 725 1.961180 CTGGACGCTCCCTTCGGATT 61.961 60.000 2.23 0.00 37.60 3.01
725 726 2.363795 TGGACGCTCCCTTCGGAT 60.364 61.111 2.23 0.00 37.60 4.18
726 727 3.068691 CTGGACGCTCCCTTCGGA 61.069 66.667 2.23 0.00 35.03 4.55
727 728 3.068691 TCTGGACGCTCCCTTCGG 61.069 66.667 2.23 0.00 35.03 4.30
728 729 2.492090 CTCTGGACGCTCCCTTCG 59.508 66.667 2.23 0.00 35.03 3.79
729 730 2.185608 GCTCTGGACGCTCCCTTC 59.814 66.667 2.23 0.00 35.03 3.46
730 731 3.394836 GGCTCTGGACGCTCCCTT 61.395 66.667 2.23 0.00 35.03 3.95
733 734 4.500116 GTCGGCTCTGGACGCTCC 62.500 72.222 0.00 0.00 44.85 4.70
734 735 3.749064 TGTCGGCTCTGGACGCTC 61.749 66.667 0.00 0.00 44.85 5.03
735 736 4.057428 GTGTCGGCTCTGGACGCT 62.057 66.667 0.00 0.00 44.85 5.07
736 737 2.279502 TATGTGTCGGCTCTGGACGC 62.280 60.000 0.00 0.00 44.85 5.19
737 738 0.172578 TTATGTGTCGGCTCTGGACG 59.827 55.000 0.00 0.00 46.93 4.79
738 739 1.641577 GTTATGTGTCGGCTCTGGAC 58.358 55.000 0.00 0.00 34.99 4.02
739 740 0.172578 CGTTATGTGTCGGCTCTGGA 59.827 55.000 0.00 0.00 0.00 3.86
740 741 0.172578 TCGTTATGTGTCGGCTCTGG 59.827 55.000 0.00 0.00 0.00 3.86
741 742 1.854743 CATCGTTATGTGTCGGCTCTG 59.145 52.381 0.00 0.00 0.00 3.35
742 743 1.749063 TCATCGTTATGTGTCGGCTCT 59.251 47.619 0.00 0.00 34.50 4.09
743 744 1.852895 GTCATCGTTATGTGTCGGCTC 59.147 52.381 0.00 0.00 34.50 4.70
744 745 1.476891 AGTCATCGTTATGTGTCGGCT 59.523 47.619 0.00 0.00 34.50 5.52
745 746 1.588404 CAGTCATCGTTATGTGTCGGC 59.412 52.381 0.00 0.00 34.50 5.54
746 747 2.193447 CCAGTCATCGTTATGTGTCGG 58.807 52.381 0.00 0.00 34.50 4.79
747 748 2.159296 TCCCAGTCATCGTTATGTGTCG 60.159 50.000 0.00 0.00 34.50 4.35
748 749 3.448686 CTCCCAGTCATCGTTATGTGTC 58.551 50.000 0.00 0.00 34.50 3.67
749 750 2.418746 GCTCCCAGTCATCGTTATGTGT 60.419 50.000 0.00 0.00 34.50 3.72
750 751 2.205074 GCTCCCAGTCATCGTTATGTG 58.795 52.381 0.00 0.00 34.50 3.21
751 752 1.202417 CGCTCCCAGTCATCGTTATGT 60.202 52.381 0.00 0.00 34.50 2.29
752 753 1.491670 CGCTCCCAGTCATCGTTATG 58.508 55.000 0.00 0.00 0.00 1.90
753 754 0.249489 GCGCTCCCAGTCATCGTTAT 60.249 55.000 0.00 0.00 0.00 1.89
754 755 1.141019 GCGCTCCCAGTCATCGTTA 59.859 57.895 0.00 0.00 0.00 3.18
755 756 2.125512 GCGCTCCCAGTCATCGTT 60.126 61.111 0.00 0.00 0.00 3.85
756 757 4.498520 CGCGCTCCCAGTCATCGT 62.499 66.667 5.56 0.00 0.00 3.73
758 759 2.427540 ATAGCGCGCTCCCAGTCATC 62.428 60.000 40.23 0.00 0.00 2.92
759 760 2.502492 ATAGCGCGCTCCCAGTCAT 61.502 57.895 40.23 21.21 0.00 3.06
760 761 3.147595 ATAGCGCGCTCCCAGTCA 61.148 61.111 40.23 19.64 0.00 3.41
761 762 2.659897 CATAGCGCGCTCCCAGTC 60.660 66.667 40.23 1.45 0.00 3.51
762 763 3.432051 GACATAGCGCGCTCCCAGT 62.432 63.158 40.23 29.26 0.00 4.00
763 764 2.659897 GACATAGCGCGCTCCCAG 60.660 66.667 40.23 26.24 0.00 4.45
764 765 4.569023 CGACATAGCGCGCTCCCA 62.569 66.667 40.23 22.30 0.00 4.37
773 774 1.205485 CTGAGAGCACGCGACATAGC 61.205 60.000 15.93 8.68 0.00 2.97
774 775 1.205485 GCTGAGAGCACGCGACATAG 61.205 60.000 15.93 2.53 41.89 2.23
775 776 1.226688 GCTGAGAGCACGCGACATA 60.227 57.895 15.93 0.00 41.89 2.29
776 777 2.507992 GCTGAGAGCACGCGACAT 60.508 61.111 15.93 0.00 41.89 3.06
777 778 4.724602 GGCTGAGAGCACGCGACA 62.725 66.667 15.93 1.95 44.75 4.35
784 785 2.853542 TTGGGTGGGCTGAGAGCA 60.854 61.111 0.00 0.00 44.75 4.26
785 786 2.045536 CTTGGGTGGGCTGAGAGC 60.046 66.667 0.00 0.00 41.46 4.09
786 787 1.002868 CACTTGGGTGGGCTGAGAG 60.003 63.158 0.00 0.00 39.59 3.20
787 788 0.842030 ATCACTTGGGTGGGCTGAGA 60.842 55.000 0.00 0.00 43.17 3.27
788 789 0.393537 GATCACTTGGGTGGGCTGAG 60.394 60.000 0.00 0.00 43.17 3.35
789 790 1.685224 GATCACTTGGGTGGGCTGA 59.315 57.895 0.00 0.00 43.17 4.26
790 791 1.746615 CGATCACTTGGGTGGGCTG 60.747 63.158 0.00 0.00 43.17 4.85
791 792 2.671070 CGATCACTTGGGTGGGCT 59.329 61.111 0.00 0.00 43.17 5.19
792 793 2.438434 CCGATCACTTGGGTGGGC 60.438 66.667 0.00 0.00 43.17 5.36
793 794 2.438434 GCCGATCACTTGGGTGGG 60.438 66.667 0.00 0.00 43.17 4.61
794 795 2.819595 CGCCGATCACTTGGGTGG 60.820 66.667 0.00 0.00 43.17 4.61
795 796 2.819595 CCGCCGATCACTTGGGTG 60.820 66.667 0.00 0.00 44.23 4.61
796 797 4.096003 CCCGCCGATCACTTGGGT 62.096 66.667 0.00 0.00 35.05 4.51
797 798 3.740128 CTCCCGCCGATCACTTGGG 62.740 68.421 3.49 3.49 41.43 4.12
798 799 2.202932 CTCCCGCCGATCACTTGG 60.203 66.667 0.00 0.00 0.00 3.61
799 800 2.202932 CCTCCCGCCGATCACTTG 60.203 66.667 0.00 0.00 0.00 3.16
800 801 4.162690 GCCTCCCGCCGATCACTT 62.163 66.667 0.00 0.00 0.00 3.16
802 803 4.593864 GAGCCTCCCGCCGATCAC 62.594 72.222 0.00 0.00 38.78 3.06
810 811 4.129737 TTCTTCGCGAGCCTCCCG 62.130 66.667 9.59 0.00 0.00 5.14
811 812 2.509561 GTTCTTCGCGAGCCTCCC 60.510 66.667 9.59 0.00 0.00 4.30
812 813 2.095252 GTGTTCTTCGCGAGCCTCC 61.095 63.158 9.59 0.00 0.00 4.30
813 814 1.073768 GAGTGTTCTTCGCGAGCCTC 61.074 60.000 9.59 6.01 0.00 4.70
814 815 1.080434 GAGTGTTCTTCGCGAGCCT 60.080 57.895 9.59 0.00 0.00 4.58
815 816 2.437343 CGAGTGTTCTTCGCGAGCC 61.437 63.158 9.59 0.00 0.00 4.70
816 817 1.666446 GACGAGTGTTCTTCGCGAGC 61.666 60.000 9.59 1.89 32.94 5.03
817 818 0.385598 TGACGAGTGTTCTTCGCGAG 60.386 55.000 9.59 3.89 32.94 5.03
818 819 0.029700 TTGACGAGTGTTCTTCGCGA 59.970 50.000 3.71 3.71 32.94 5.87
819 820 0.158928 GTTGACGAGTGTTCTTCGCG 59.841 55.000 0.00 0.00 0.00 5.87
820 821 1.452399 GAGTTGACGAGTGTTCTTCGC 59.548 52.381 0.00 0.00 0.00 4.70
821 822 2.721603 CTGAGTTGACGAGTGTTCTTCG 59.278 50.000 0.00 0.00 0.00 3.79
822 823 3.707793 ACTGAGTTGACGAGTGTTCTTC 58.292 45.455 0.00 0.00 0.00 2.87
823 824 3.802948 ACTGAGTTGACGAGTGTTCTT 57.197 42.857 0.00 0.00 0.00 2.52
824 825 3.130516 TCAACTGAGTTGACGAGTGTTCT 59.869 43.478 23.02 0.00 45.88 3.01
825 826 3.444916 TCAACTGAGTTGACGAGTGTTC 58.555 45.455 23.02 0.00 45.88 3.18
826 827 3.520290 TCAACTGAGTTGACGAGTGTT 57.480 42.857 23.02 0.00 45.88 3.32
834 835 5.472564 AGGTAACGAGGTCAACTGAGTTGA 61.473 45.833 23.02 23.02 46.02 3.18
835 836 3.057734 GGTAACGAGGTCAACTGAGTTG 58.942 50.000 18.84 18.84 43.99 3.16
836 837 2.963782 AGGTAACGAGGTCAACTGAGTT 59.036 45.455 0.00 0.00 46.39 3.01
837 838 2.595238 AGGTAACGAGGTCAACTGAGT 58.405 47.619 0.00 0.00 46.39 3.41
838 839 3.757493 ACTAGGTAACGAGGTCAACTGAG 59.243 47.826 0.00 0.00 44.65 3.35
839 840 3.759581 ACTAGGTAACGAGGTCAACTGA 58.240 45.455 0.00 0.00 44.65 3.41
840 841 4.516365 AACTAGGTAACGAGGTCAACTG 57.484 45.455 0.00 0.00 44.65 3.16
841 842 4.831710 AGAAACTAGGTAACGAGGTCAACT 59.168 41.667 0.00 0.00 38.85 3.16
842 843 5.131594 AGAAACTAGGTAACGAGGTCAAC 57.868 43.478 0.00 0.00 38.85 3.18
843 844 4.083110 CGAGAAACTAGGTAACGAGGTCAA 60.083 45.833 0.00 0.00 38.85 3.18
844 845 3.438087 CGAGAAACTAGGTAACGAGGTCA 59.562 47.826 0.00 0.00 38.85 4.02
845 846 3.686726 TCGAGAAACTAGGTAACGAGGTC 59.313 47.826 0.00 0.00 38.85 3.85
851 852 4.492611 CCCACTTCGAGAAACTAGGTAAC 58.507 47.826 0.00 0.00 0.00 2.50
852 853 3.056322 GCCCACTTCGAGAAACTAGGTAA 60.056 47.826 0.00 0.00 0.00 2.85
911 925 2.092429 TGCTGGGCTAAATTAGGGACAG 60.092 50.000 1.88 0.00 0.00 3.51
916 957 3.132824 CCCTTTTGCTGGGCTAAATTAGG 59.867 47.826 1.88 0.00 37.99 2.69
952 993 4.200283 GAGGCTGTCTCGCGGGAG 62.200 72.222 22.60 22.60 41.89 4.30
974 1040 4.334118 TGCAGCCTGCCACACGAT 62.334 61.111 15.29 0.00 44.23 3.73
988 1054 2.347114 CCACATCGGACACCTGCA 59.653 61.111 0.00 0.00 36.56 4.41
989 1055 2.436646 CCCACATCGGACACCTGC 60.437 66.667 0.00 0.00 36.56 4.85
990 1056 1.219124 CTCCCACATCGGACACCTG 59.781 63.158 0.00 0.00 36.56 4.00
991 1057 1.229209 ACTCCCACATCGGACACCT 60.229 57.895 0.00 0.00 36.56 4.00
992 1058 1.079127 CACTCCCACATCGGACACC 60.079 63.158 0.00 0.00 36.56 4.16
1296 1362 2.106683 GGGAGCAACACCGGATTCG 61.107 63.158 9.46 0.00 0.00 3.34
1302 1368 3.353836 CCGTTGGGAGCAACACCG 61.354 66.667 0.00 0.00 34.94 4.94
1477 1543 2.766263 TCCTCGCATAGTCAACATTCCT 59.234 45.455 0.00 0.00 0.00 3.36
1734 1800 4.261801 AGGAATTCCTTACAACCACATCG 58.738 43.478 21.89 0.00 46.09 3.84
1863 1929 4.389576 GCACGACCAAGCTTGCCG 62.390 66.667 26.85 26.85 0.00 5.69
1870 1936 1.133253 CATCTTGCGCACGACCAAG 59.867 57.895 19.66 8.56 39.74 3.61
1881 1947 5.221880 TCAAACAAACATACTGCATCTTGC 58.778 37.500 0.00 0.00 45.29 4.01
1887 1953 6.095300 CCATCCTATCAAACAAACATACTGCA 59.905 38.462 0.00 0.00 0.00 4.41
1890 1956 6.095440 GTGCCATCCTATCAAACAAACATACT 59.905 38.462 0.00 0.00 0.00 2.12
1896 1962 3.417101 ACGTGCCATCCTATCAAACAAA 58.583 40.909 0.00 0.00 0.00 2.83
1947 2013 5.163723 GCTACAAGCTGACAATATTGCAAGA 60.164 40.000 15.48 0.00 38.45 3.02
1953 2019 4.581824 CCATGGCTACAAGCTGACAATATT 59.418 41.667 0.00 0.00 41.99 1.28
1954 2020 4.139786 CCATGGCTACAAGCTGACAATAT 58.860 43.478 0.00 0.00 41.99 1.28
1956 2022 2.372264 CCATGGCTACAAGCTGACAAT 58.628 47.619 0.00 0.00 41.99 2.71
1999 2065 6.238731 CCATCAAACAGAAACTTGAAGTAGCA 60.239 38.462 0.00 0.00 35.31 3.49
2000 2066 6.145535 CCATCAAACAGAAACTTGAAGTAGC 58.854 40.000 0.00 0.00 35.31 3.58
2064 2130 6.528321 TCTCCTACAAATTAGATCTGCCATG 58.472 40.000 5.18 2.31 0.00 3.66
2082 2148 4.690261 GCATCTTCTAGGTGACCTCTCCTA 60.690 50.000 7.77 3.65 40.11 2.94
2273 2339 2.514592 CGCCCTCCGATGCATGTT 60.515 61.111 2.46 0.00 40.02 2.71
2340 2406 5.338381 CCAACTACATCCAGGCTCTTTCTTA 60.338 44.000 0.00 0.00 0.00 2.10
2479 2545 7.385267 TCACCAAAAATCATCTATGGTTTTGG 58.615 34.615 28.10 28.10 46.98 3.28
2492 2558 5.787953 TCAAAGAGCATCACCAAAAATCA 57.212 34.783 0.00 0.00 37.82 2.57
2545 2611 4.706842 ACAACCAACTAGGACAATGTCT 57.293 40.909 13.53 2.24 41.22 3.41
2638 2704 5.238214 CCTTACTTATCCTCTTGCTGCAATC 59.762 44.000 16.38 0.00 0.00 2.67
2672 2738 3.120321 ACAACATAAGCAAGTCACCGA 57.880 42.857 0.00 0.00 0.00 4.69
2714 2781 1.805428 GCAGCACCATGGAAACCGTT 61.805 55.000 21.47 0.00 0.00 4.44
2722 2789 2.028839 TCAATTGAAAGCAGCACCATGG 60.029 45.455 11.19 11.19 0.00 3.66
2727 2794 2.798976 TGGTCAATTGAAAGCAGCAC 57.201 45.000 10.35 0.00 0.00 4.40
2946 3023 6.647334 TCCTGTGAAATTGCATGAAAAGTA 57.353 33.333 0.00 0.00 0.00 2.24
2976 3053 2.301346 CCATGAGGTTGGGCTCAATAC 58.699 52.381 0.27 0.00 35.10 1.89
3152 3229 8.925161 TGAAAACACACAAGAATAGGAAAAAG 57.075 30.769 0.00 0.00 0.00 2.27
3383 3774 5.482908 GCAGTAGGAAAAACAGAGATCAGA 58.517 41.667 0.00 0.00 0.00 3.27
3424 3815 2.829120 AGCACCTCCTTCTTGACTAGAC 59.171 50.000 0.00 0.00 30.90 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.