Multiple sequence alignment - TraesCS1D01G100600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G100600 chr1D 100.000 9090 0 0 1 9090 88207327 88216416 0.000000e+00 16787.0
1 TraesCS1D01G100600 chr1D 98.388 6079 79 7 1661 7731 419080204 419074137 0.000000e+00 10665.0
2 TraesCS1D01G100600 chr1D 96.196 920 18 6 759 1661 87903421 87904340 0.000000e+00 1489.0
3 TraesCS1D01G100600 chr1D 99.506 810 0 3 7794 8602 87904337 87905143 0.000000e+00 1471.0
4 TraesCS1D01G100600 chr1D 93.552 946 55 4 719 1661 88282846 88281904 0.000000e+00 1404.0
5 TraesCS1D01G100600 chr1D 89.941 507 30 8 7794 8284 88281907 88281406 1.290000e-177 634.0
6 TraesCS1D01G100600 chr1D 89.537 497 33 8 7794 8276 88243755 88243264 6.030000e-171 612.0
7 TraesCS1D01G100600 chr1D 85.593 472 24 10 8191 8639 87909280 87909730 1.080000e-123 455.0
8 TraesCS1D01G100600 chr1D 88.288 222 13 9 8481 8691 88243203 88242984 4.210000e-63 254.0
9 TraesCS1D01G100600 chr1D 84.103 195 16 8 719 905 87897103 87897290 3.370000e-39 174.0
10 TraesCS1D01G100600 chr1D 90.291 103 9 1 8642 8743 87905144 87905246 5.730000e-27 134.0
11 TraesCS1D01G100600 chr1D 98.413 63 0 1 7732 7793 88209907 88209969 9.650000e-20 110.0
12 TraesCS1D01G100600 chr1D 84.426 122 8 7 8978 9089 88242677 88242557 9.650000e-20 110.0
13 TraesCS1D01G100600 chr1D 98.413 63 0 1 7732 7793 206070396 206070334 9.650000e-20 110.0
14 TraesCS1D01G100600 chr2D 98.544 6043 73 5 1662 7696 105650396 105656431 0.000000e+00 10658.0
15 TraesCS1D01G100600 chr2D 98.241 6082 92 6 1662 7731 571223178 571229256 0.000000e+00 10624.0
16 TraesCS1D01G100600 chr2D 98.208 6081 92 8 1662 7731 137563452 137569526 0.000000e+00 10610.0
17 TraesCS1D01G100600 chr2D 90.821 719 59 5 1 713 531926745 531927462 0.000000e+00 955.0
18 TraesCS1D01G100600 chr2D 89.902 713 56 13 1 712 542575741 542576438 0.000000e+00 904.0
19 TraesCS1D01G100600 chr2D 89.365 724 67 9 1 714 554479253 554478530 0.000000e+00 902.0
20 TraesCS1D01G100600 chr2D 98.438 64 1 0 7732 7795 571229582 571229645 7.460000e-21 113.0
21 TraesCS1D01G100600 chr3D 98.400 6061 83 7 1661 7721 580611920 580617966 0.000000e+00 10643.0
22 TraesCS1D01G100600 chr3D 93.846 715 34 8 1 710 586541136 586540427 0.000000e+00 1068.0
23 TraesCS1D01G100600 chrUn 98.274 6083 86 7 1661 7731 27171517 27177592 0.000000e+00 10634.0
24 TraesCS1D01G100600 chrUn 98.143 6086 93 9 1659 7731 27166049 27172127 0.000000e+00 10595.0
25 TraesCS1D01G100600 chr5D 98.095 6089 97 8 1644 7717 125613567 125619651 0.000000e+00 10584.0
26 TraesCS1D01G100600 chr5D 91.829 514 39 3 202 713 387731238 387730726 0.000000e+00 713.0
27 TraesCS1D01G100600 chr5D 97.015 67 1 1 7732 7797 481258753 481258687 2.680000e-20 111.0
28 TraesCS1D01G100600 chr5D 93.151 73 3 2 7732 7803 542596393 542596322 1.250000e-18 106.0
29 TraesCS1D01G100600 chr5A 94.988 6086 271 17 1656 7731 700800418 700806479 0.000000e+00 9518.0
30 TraesCS1D01G100600 chr5A 88.017 701 62 14 1 693 643446628 643447314 0.000000e+00 809.0
31 TraesCS1D01G100600 chr5A 95.833 48 0 2 7686 7731 53467451 53467404 9.790000e-10 76.8
32 TraesCS1D01G100600 chr6B 94.759 6087 292 19 1662 7731 24800761 24806837 0.000000e+00 9448.0
33 TraesCS1D01G100600 chr6B 86.131 995 102 25 1661 2642 158866464 158867435 0.000000e+00 1040.0
34 TraesCS1D01G100600 chr1A 89.401 1236 65 26 7794 8980 84621622 84622840 0.000000e+00 1496.0
35 TraesCS1D01G100600 chr1A 89.367 1232 69 24 7794 8980 84484425 84485639 0.000000e+00 1493.0
36 TraesCS1D01G100600 chr1A 91.111 945 61 12 722 1661 84796942 84796016 0.000000e+00 1258.0
37 TraesCS1D01G100600 chr1A 89.707 991 72 12 1661 2641 160523361 160524331 0.000000e+00 1238.0
38 TraesCS1D01G100600 chr1A 91.904 877 58 10 788 1661 85006766 85005900 0.000000e+00 1214.0
39 TraesCS1D01G100600 chr1A 93.204 515 17 7 773 1269 84056038 84056552 0.000000e+00 741.0
40 TraesCS1D01G100600 chr1A 94.012 334 20 0 7794 8127 84796019 84795686 2.930000e-139 507.0
41 TraesCS1D01G100600 chr1A 94.012 334 20 0 7794 8127 85005903 85005570 2.930000e-139 507.0
42 TraesCS1D01G100600 chr1A 86.222 225 10 13 8481 8695 84795496 84795283 3.300000e-54 224.0
43 TraesCS1D01G100600 chr1A 86.792 159 7 4 719 877 84621099 84621243 2.030000e-36 165.0
44 TraesCS1D01G100600 chr4A 93.089 984 51 10 1661 2642 585090381 585091349 0.000000e+00 1424.0
45 TraesCS1D01G100600 chr1B 93.849 943 53 3 722 1661 142134768 142133828 0.000000e+00 1415.0
46 TraesCS1D01G100600 chr1B 92.894 957 48 11 719 1661 142037225 142038175 0.000000e+00 1373.0
47 TraesCS1D01G100600 chr1B 92.581 957 53 9 719 1661 141844714 141845666 0.000000e+00 1358.0
48 TraesCS1D01G100600 chr1B 92.163 957 55 11 719 1661 142093485 142094435 0.000000e+00 1334.0
49 TraesCS1D01G100600 chr1B 89.440 928 46 21 8182 9084 142102573 142103473 0.000000e+00 1123.0
50 TraesCS1D01G100600 chr1B 83.980 1005 120 31 1661 2641 654000317 653999330 0.000000e+00 926.0
51 TraesCS1D01G100600 chr1B 84.661 841 53 28 7794 8602 142038172 142038968 0.000000e+00 769.0
52 TraesCS1D01G100600 chr1B 92.950 383 27 0 7794 8176 142094432 142094814 7.970000e-155 558.0
53 TraesCS1D01G100600 chr1B 86.914 512 25 15 7794 8284 142133831 142133341 3.740000e-148 536.0
54 TraesCS1D01G100600 chr1B 93.529 340 21 1 7794 8132 141845663 141846002 1.050000e-138 505.0
55 TraesCS1D01G100600 chr1B 86.975 238 19 6 8490 8718 141846199 141846433 3.260000e-64 257.0
56 TraesCS1D01G100600 chr1B 85.641 195 17 7 719 905 141768567 141768758 2.590000e-45 195.0
57 TraesCS1D01G100600 chr1B 90.789 76 6 1 8642 8716 142038969 142039044 5.810000e-17 100.0
58 TraesCS1D01G100600 chr1B 100.000 49 0 0 9041 9089 142132665 142132617 3.500000e-14 91.6
59 TraesCS1D01G100600 chr1B 93.617 47 3 0 8978 9024 142132753 142132707 4.550000e-08 71.3
60 TraesCS1D01G100600 chr4D 93.377 770 44 2 894 1661 464798073 464797309 0.000000e+00 1133.0
61 TraesCS1D01G100600 chr4D 91.352 636 46 8 80 713 335886079 335886707 0.000000e+00 861.0
62 TraesCS1D01G100600 chr4D 89.881 504 31 9 7794 8284 464797312 464796816 1.670000e-176 630.0
63 TraesCS1D01G100600 chr4D 87.611 226 16 9 8481 8696 464796768 464796545 1.520000e-62 252.0
64 TraesCS1D01G100600 chr4D 100.000 59 0 0 7732 7790 3849202 3849144 9.650000e-20 110.0
65 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 3854569 3854507 9.650000e-20 110.0
66 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 28857131 28857069 9.650000e-20 110.0
67 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 28862590 28862528 9.650000e-20 110.0
68 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 28868286 28868224 9.650000e-20 110.0
69 TraesCS1D01G100600 chr4D 100.000 59 0 0 7732 7790 46618857 46618915 9.650000e-20 110.0
70 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 73332674 73332736 9.650000e-20 110.0
71 TraesCS1D01G100600 chr4D 100.000 59 0 0 7732 7790 73346608 73346666 9.650000e-20 110.0
72 TraesCS1D01G100600 chr4D 100.000 59 0 0 7732 7790 310390345 310390287 9.650000e-20 110.0
73 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 310395401 310395339 9.650000e-20 110.0
74 TraesCS1D01G100600 chr4D 98.413 63 0 1 7732 7793 493781480 493781542 9.650000e-20 110.0
75 TraesCS1D01G100600 chr4D 93.617 47 3 0 8978 9024 464796256 464796210 4.550000e-08 71.3
76 TraesCS1D01G100600 chr3B 91.447 795 50 13 7794 8583 535704928 535704147 0.000000e+00 1075.0
77 TraesCS1D01G100600 chr3B 86.627 673 32 24 8056 8695 535555786 535555139 0.000000e+00 691.0
78 TraesCS1D01G100600 chr3B 85.577 104 13 2 8642 8743 535704138 535704035 3.470000e-19 108.0
79 TraesCS1D01G100600 chr3B 91.837 49 2 1 7681 7727 605225312 605225264 5.890000e-07 67.6
80 TraesCS1D01G100600 chr2A 93.812 711 37 7 1661 2367 4830707 4830000 0.000000e+00 1062.0
81 TraesCS1D01G100600 chr7D 90.934 717 58 7 1 712 604273778 604274492 0.000000e+00 957.0
82 TraesCS1D01G100600 chr7D 90.656 717 60 6 1 713 52711534 52710821 0.000000e+00 946.0
83 TraesCS1D01G100600 chr7D 90.265 565 43 9 1 557 566443160 566443720 0.000000e+00 728.0
84 TraesCS1D01G100600 chr7D 98.485 66 1 0 7732 7797 599697334 599697399 5.770000e-22 117.0
85 TraesCS1D01G100600 chr7D 93.506 77 3 2 7732 7806 626954390 626954314 7.460000e-21 113.0
86 TraesCS1D01G100600 chr6D 98.413 63 1 0 7732 7794 454153653 454153591 2.680000e-20 111.0
87 TraesCS1D01G100600 chr4B 94.286 70 2 2 7732 7799 461629995 461629926 1.250000e-18 106.0
88 TraesCS1D01G100600 chr7A 95.312 64 1 1 7670 7731 127987974 127988037 5.810000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G100600 chr1D 88207327 88216416 9089 False 16787.000000 16787 100.000000 1 9090 1 chr1D.!!$F3 9089
1 TraesCS1D01G100600 chr1D 419074137 419080204 6067 True 10665.000000 10665 98.388000 1661 7731 1 chr1D.!!$R2 6070
2 TraesCS1D01G100600 chr1D 87903421 87905246 1825 False 1031.333333 1489 95.331000 759 8743 3 chr1D.!!$F5 7984
3 TraesCS1D01G100600 chr1D 88281406 88282846 1440 True 1019.000000 1404 91.746500 719 8284 2 chr1D.!!$R4 7565
4 TraesCS1D01G100600 chr1D 88242557 88243755 1198 True 325.333333 612 87.417000 7794 9089 3 chr1D.!!$R3 1295
5 TraesCS1D01G100600 chr2D 105650396 105656431 6035 False 10658.000000 10658 98.544000 1662 7696 1 chr2D.!!$F1 6034
6 TraesCS1D01G100600 chr2D 137563452 137569526 6074 False 10610.000000 10610 98.208000 1662 7731 1 chr2D.!!$F2 6069
7 TraesCS1D01G100600 chr2D 571223178 571229645 6467 False 5368.500000 10624 98.339500 1662 7795 2 chr2D.!!$F5 6133
8 TraesCS1D01G100600 chr2D 531926745 531927462 717 False 955.000000 955 90.821000 1 713 1 chr2D.!!$F3 712
9 TraesCS1D01G100600 chr2D 542575741 542576438 697 False 904.000000 904 89.902000 1 712 1 chr2D.!!$F4 711
10 TraesCS1D01G100600 chr2D 554478530 554479253 723 True 902.000000 902 89.365000 1 714 1 chr2D.!!$R1 713
11 TraesCS1D01G100600 chr3D 580611920 580617966 6046 False 10643.000000 10643 98.400000 1661 7721 1 chr3D.!!$F1 6060
12 TraesCS1D01G100600 chr3D 586540427 586541136 709 True 1068.000000 1068 93.846000 1 710 1 chr3D.!!$R1 709
13 TraesCS1D01G100600 chrUn 27166049 27177592 11543 False 10614.500000 10634 98.208500 1659 7731 2 chrUn.!!$F1 6072
14 TraesCS1D01G100600 chr5D 125613567 125619651 6084 False 10584.000000 10584 98.095000 1644 7717 1 chr5D.!!$F1 6073
15 TraesCS1D01G100600 chr5D 387730726 387731238 512 True 713.000000 713 91.829000 202 713 1 chr5D.!!$R1 511
16 TraesCS1D01G100600 chr5A 700800418 700806479 6061 False 9518.000000 9518 94.988000 1656 7731 1 chr5A.!!$F2 6075
17 TraesCS1D01G100600 chr5A 643446628 643447314 686 False 809.000000 809 88.017000 1 693 1 chr5A.!!$F1 692
18 TraesCS1D01G100600 chr6B 24800761 24806837 6076 False 9448.000000 9448 94.759000 1662 7731 1 chr6B.!!$F1 6069
19 TraesCS1D01G100600 chr6B 158866464 158867435 971 False 1040.000000 1040 86.131000 1661 2642 1 chr6B.!!$F2 981
20 TraesCS1D01G100600 chr1A 84484425 84485639 1214 False 1493.000000 1493 89.367000 7794 8980 1 chr1A.!!$F2 1186
21 TraesCS1D01G100600 chr1A 160523361 160524331 970 False 1238.000000 1238 89.707000 1661 2641 1 chr1A.!!$F3 980
22 TraesCS1D01G100600 chr1A 85005570 85006766 1196 True 860.500000 1214 92.958000 788 8127 2 chr1A.!!$R2 7339
23 TraesCS1D01G100600 chr1A 84621099 84622840 1741 False 830.500000 1496 88.096500 719 8980 2 chr1A.!!$F4 8261
24 TraesCS1D01G100600 chr1A 84056038 84056552 514 False 741.000000 741 93.204000 773 1269 1 chr1A.!!$F1 496
25 TraesCS1D01G100600 chr1A 84795283 84796942 1659 True 663.000000 1258 90.448333 722 8695 3 chr1A.!!$R1 7973
26 TraesCS1D01G100600 chr4A 585090381 585091349 968 False 1424.000000 1424 93.089000 1661 2642 1 chr4A.!!$F1 981
27 TraesCS1D01G100600 chr1B 142102573 142103473 900 False 1123.000000 1123 89.440000 8182 9084 1 chr1B.!!$F2 902
28 TraesCS1D01G100600 chr1B 142093485 142094814 1329 False 946.000000 1334 92.556500 719 8176 2 chr1B.!!$F5 7457
29 TraesCS1D01G100600 chr1B 653999330 654000317 987 True 926.000000 926 83.980000 1661 2641 1 chr1B.!!$R1 980
30 TraesCS1D01G100600 chr1B 142037225 142039044 1819 False 747.333333 1373 89.448000 719 8716 3 chr1B.!!$F4 7997
31 TraesCS1D01G100600 chr1B 141844714 141846433 1719 False 706.666667 1358 91.028333 719 8718 3 chr1B.!!$F3 7999
32 TraesCS1D01G100600 chr1B 142132617 142134768 2151 True 528.475000 1415 93.595000 722 9089 4 chr1B.!!$R2 8367
33 TraesCS1D01G100600 chr4D 335886079 335886707 628 False 861.000000 861 91.352000 80 713 1 chr4D.!!$F4 633
34 TraesCS1D01G100600 chr4D 464796210 464798073 1863 True 521.575000 1133 91.121500 894 9024 4 chr4D.!!$R8 8130
35 TraesCS1D01G100600 chr3B 535555139 535555786 647 True 691.000000 691 86.627000 8056 8695 1 chr3B.!!$R1 639
36 TraesCS1D01G100600 chr3B 535704035 535704928 893 True 591.500000 1075 88.512000 7794 8743 2 chr3B.!!$R3 949
37 TraesCS1D01G100600 chr2A 4830000 4830707 707 True 1062.000000 1062 93.812000 1661 2367 1 chr2A.!!$R1 706
38 TraesCS1D01G100600 chr7D 604273778 604274492 714 False 957.000000 957 90.934000 1 712 1 chr7D.!!$F3 711
39 TraesCS1D01G100600 chr7D 52710821 52711534 713 True 946.000000 946 90.656000 1 713 1 chr7D.!!$R1 712
40 TraesCS1D01G100600 chr7D 566443160 566443720 560 False 728.000000 728 90.265000 1 557 1 chr7D.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 79 1.534595 GTCCTGAGAAGCAAGCAACAG 59.465 52.381 0.00 0.00 0.00 3.16 F
609 626 2.031465 CCGTAACGGCACCTGGTT 59.969 61.111 0.00 0.00 41.17 3.67 F
2059 5868 0.620700 AACCTATTCGCCCCTCACCT 60.621 55.000 0.00 0.00 0.00 4.00 F
2374 11673 0.248539 CGTAGGTGTAAGCTCGGCTC 60.249 60.000 0.00 0.00 44.61 4.70 F
3488 12832 0.035317 AGCCATCTCGCTTCAACACA 59.965 50.000 0.00 0.00 34.73 3.72 F
3938 13282 3.274095 TGGTGTGCAATCCGAATATCA 57.726 42.857 0.00 0.00 0.00 2.15 F
4813 14157 0.618981 AAGGGTTTCCTCGTCATCCC 59.381 55.000 0.00 0.00 44.07 3.85 F
4913 14257 3.205784 AGGAGTGCTTTGCATATCTCC 57.794 47.619 15.48 15.48 44.48 3.71 F
6521 15865 1.599797 CCCCTTTTCCGTGCGAGTT 60.600 57.895 0.00 0.00 0.00 3.01 F
6919 16263 0.103390 TGCTCCGAGAAACACAACGA 59.897 50.000 0.00 0.00 0.00 3.85 F
7744 17090 0.396695 TCGACCGGCCCTTAGAGATT 60.397 55.000 0.00 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1370 0.103937 GACGAGCTCCATGAAGAGGG 59.896 60.000 8.47 0.00 34.26 4.30 R
2288 11580 0.463204 CATGATCTGAGACGTGGGCT 59.537 55.000 0.00 0.00 0.00 5.19 R
3138 12482 2.158310 ACCTATGTGATCGGAGATCCCA 60.158 50.000 7.47 2.96 45.12 4.37 R
4099 13443 3.992943 ACTGATATTCGGAACCAACCA 57.007 42.857 0.00 0.00 0.00 3.67 R
4436 13780 2.101582 GCTAGACTGACCACCATTCGAT 59.898 50.000 0.00 0.00 30.61 3.59 R
5075 14419 2.649531 TGTGTCGATCCCCAAAAAGT 57.350 45.000 0.00 0.00 0.00 2.66 R
6521 15865 2.821969 GAGCAGAATTCAAGGGCAAAGA 59.178 45.455 8.44 0.00 0.00 2.52 R
6919 16263 0.912486 AAGGCGTTCAAGGAGGCTAT 59.088 50.000 0.00 0.00 39.97 2.97 R
7788 17134 0.466189 CCCAAGCGCCCACATATTCT 60.466 55.000 2.29 0.00 0.00 2.40 R
7789 17135 0.751643 ACCCAAGCGCCCACATATTC 60.752 55.000 2.29 0.00 0.00 1.75 R
8976 18581 0.399806 AGGAGGAGGAAGAGCCATCC 60.400 60.000 0.00 0.00 40.02 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 79 1.534595 GTCCTGAGAAGCAAGCAACAG 59.465 52.381 0.00 0.00 0.00 3.16
326 337 6.044171 AGCAGAGCAAGAATTAGGGAGAATAT 59.956 38.462 0.00 0.00 0.00 1.28
459 470 2.741145 GTTGCTAGAGGAGAGGAAGGA 58.259 52.381 0.00 0.00 0.00 3.36
609 626 2.031465 CCGTAACGGCACCTGGTT 59.969 61.111 0.00 0.00 41.17 3.67
714 732 3.182967 GCACGAGTCAGAATTCAGGTAG 58.817 50.000 8.44 0.00 0.00 3.18
715 733 3.367498 GCACGAGTCAGAATTCAGGTAGT 60.367 47.826 8.44 0.00 0.00 2.73
716 734 4.810790 CACGAGTCAGAATTCAGGTAGTT 58.189 43.478 8.44 0.00 0.00 2.24
727 745 7.606456 CAGAATTCAGGTAGTTTAGTTGGCTTA 59.394 37.037 8.44 0.00 0.00 3.09
761 779 2.159787 CGATTTCAAAGTGAGCTGTCCG 60.160 50.000 0.00 0.00 0.00 4.79
1006 1042 2.034878 TCTAAGCTCAGATCATGCCGT 58.965 47.619 0.00 0.00 0.00 5.68
1307 1343 5.565637 CGATTATCGAGATCTTGGATGTGGT 60.566 44.000 9.20 4.23 43.74 4.16
1487 1523 1.841556 TCCACCGGGACTTCAAGCT 60.842 57.895 6.32 0.00 38.64 3.74
1659 1695 3.443045 GGCCAGGCCGTGAACATG 61.443 66.667 17.05 0.00 39.62 3.21
2009 5818 1.970092 AGAGGAAGTAGACGATCGGG 58.030 55.000 20.98 0.00 0.00 5.14
2059 5868 0.620700 AACCTATTCGCCCCTCACCT 60.621 55.000 0.00 0.00 0.00 4.00
2282 11574 3.054503 CGACCCACGTCCGAGTCT 61.055 66.667 0.00 0.00 35.40 3.24
2284 11576 2.203451 ACCCACGTCCGAGTCTGT 60.203 61.111 0.00 0.00 0.00 3.41
2285 11577 2.258591 CCCACGTCCGAGTCTGTG 59.741 66.667 0.00 0.00 0.00 3.66
2286 11578 2.265904 CCCACGTCCGAGTCTGTGA 61.266 63.158 0.00 0.00 34.29 3.58
2287 11579 1.595993 CCCACGTCCGAGTCTGTGAT 61.596 60.000 0.00 0.00 34.29 3.06
2288 11580 1.092348 CCACGTCCGAGTCTGTGATA 58.908 55.000 0.00 0.00 34.29 2.15
2292 11586 0.386113 GTCCGAGTCTGTGATAGCCC 59.614 60.000 0.00 0.00 0.00 5.19
2373 11672 1.807886 CGTAGGTGTAAGCTCGGCT 59.192 57.895 0.00 0.00 44.61 5.52
2374 11673 0.248539 CGTAGGTGTAAGCTCGGCTC 60.249 60.000 0.00 0.00 44.61 4.70
2375 11674 0.248539 GTAGGTGTAAGCTCGGCTCG 60.249 60.000 0.00 0.00 44.61 5.03
2376 11675 1.381928 TAGGTGTAAGCTCGGCTCGG 61.382 60.000 0.00 0.00 44.61 4.63
2377 11676 2.886124 GTGTAAGCTCGGCTCGGC 60.886 66.667 0.00 0.00 38.25 5.54
2393 11699 2.361104 GCTCAATCCCGCAACCCA 60.361 61.111 0.00 0.00 0.00 4.51
3138 12482 5.269554 TGTTTTCCCAGGTCCTAATTCAT 57.730 39.130 0.00 0.00 0.00 2.57
3300 12644 1.557099 AGTCCAACGCTATCACTCCA 58.443 50.000 0.00 0.00 0.00 3.86
3488 12832 0.035317 AGCCATCTCGCTTCAACACA 59.965 50.000 0.00 0.00 34.73 3.72
3836 13180 3.933332 GCTAGGTACATCAGTGAACCAAC 59.067 47.826 13.69 3.20 34.29 3.77
3938 13282 3.274095 TGGTGTGCAATCCGAATATCA 57.726 42.857 0.00 0.00 0.00 2.15
4099 13443 4.141390 ACTTGACCTCCTCAATGACTTTGT 60.141 41.667 1.43 0.00 38.26 2.83
4742 14086 3.827302 GGAGTATCATCCACGAGGTACAT 59.173 47.826 0.00 0.00 39.34 2.29
4813 14157 0.618981 AAGGGTTTCCTCGTCATCCC 59.381 55.000 0.00 0.00 44.07 3.85
4913 14257 3.205784 AGGAGTGCTTTGCATATCTCC 57.794 47.619 15.48 15.48 44.48 3.71
5002 14346 7.199766 GTCAGATACCTCAGATTTCACTACTG 58.800 42.308 0.00 0.00 0.00 2.74
5727 15071 4.517832 CCTTTGGCTAAAGTAAAACTCGGT 59.482 41.667 19.71 0.00 41.36 4.69
6521 15865 1.599797 CCCCTTTTCCGTGCGAGTT 60.600 57.895 0.00 0.00 0.00 3.01
6919 16263 0.103390 TGCTCCGAGAAACACAACGA 59.897 50.000 0.00 0.00 0.00 3.85
6973 16317 0.902531 AATCGTTCCCGTGGAGACAT 59.097 50.000 0.00 0.00 46.14 3.06
7278 16622 2.403252 ACGCTAGCATGGCTAAAACT 57.597 45.000 16.45 0.00 42.26 2.66
7468 16812 3.122297 ACGTAGAGGAAGTAGACGATCG 58.878 50.000 14.88 14.88 37.00 3.69
7520 16864 0.620700 AACCTATTCGCCCCTCACCT 60.621 55.000 0.00 0.00 0.00 4.00
7539 16883 2.168496 CTCGTACAGGAACCAGAAGGA 58.832 52.381 0.00 0.00 38.69 3.36
7581 16925 4.428922 CGTCGACCGTGTACGCGA 62.429 66.667 29.24 7.13 38.18 5.87
7588 16932 4.428922 CGTGTACGCGACGGACGA 62.429 66.667 23.95 0.00 44.60 4.20
7731 17077 4.477975 GAGACGTGGGCTCGACCG 62.478 72.222 0.00 0.00 40.62 4.79
7739 17085 4.222847 GGCTCGACCGGCCCTTAG 62.223 72.222 0.00 0.00 43.49 2.18
7740 17086 3.145551 GCTCGACCGGCCCTTAGA 61.146 66.667 0.00 0.00 0.00 2.10
7741 17087 3.121019 CTCGACCGGCCCTTAGAG 58.879 66.667 0.00 0.00 0.00 2.43
7742 17088 1.453379 CTCGACCGGCCCTTAGAGA 60.453 63.158 0.00 0.00 0.00 3.10
7743 17089 0.824182 CTCGACCGGCCCTTAGAGAT 60.824 60.000 0.00 0.00 0.00 2.75
7744 17090 0.396695 TCGACCGGCCCTTAGAGATT 60.397 55.000 0.00 0.00 0.00 2.40
7745 17091 0.464452 CGACCGGCCCTTAGAGATTT 59.536 55.000 0.00 0.00 0.00 2.17
7746 17092 1.134491 CGACCGGCCCTTAGAGATTTT 60.134 52.381 0.00 0.00 0.00 1.82
7747 17093 2.679930 CGACCGGCCCTTAGAGATTTTT 60.680 50.000 0.00 0.00 0.00 1.94
7748 17094 2.943690 GACCGGCCCTTAGAGATTTTTC 59.056 50.000 0.00 0.00 0.00 2.29
7749 17095 2.307686 ACCGGCCCTTAGAGATTTTTCA 59.692 45.455 0.00 0.00 0.00 2.69
7750 17096 2.945668 CCGGCCCTTAGAGATTTTTCAG 59.054 50.000 0.00 0.00 0.00 3.02
7751 17097 3.370527 CCGGCCCTTAGAGATTTTTCAGA 60.371 47.826 0.00 0.00 0.00 3.27
7752 17098 4.261801 CGGCCCTTAGAGATTTTTCAGAA 58.738 43.478 0.00 0.00 0.00 3.02
7753 17099 4.700213 CGGCCCTTAGAGATTTTTCAGAAA 59.300 41.667 0.00 0.00 0.00 2.52
7754 17100 5.358160 CGGCCCTTAGAGATTTTTCAGAAAT 59.642 40.000 0.00 0.00 0.00 2.17
7755 17101 6.127619 CGGCCCTTAGAGATTTTTCAGAAATT 60.128 38.462 0.00 0.00 0.00 1.82
7756 17102 7.038048 GGCCCTTAGAGATTTTTCAGAAATTG 58.962 38.462 0.00 0.00 0.00 2.32
7757 17103 6.533012 GCCCTTAGAGATTTTTCAGAAATTGC 59.467 38.462 0.00 0.00 0.00 3.56
7758 17104 7.578380 GCCCTTAGAGATTTTTCAGAAATTGCT 60.578 37.037 0.00 0.00 0.00 3.91
7759 17105 8.960591 CCCTTAGAGATTTTTCAGAAATTGCTA 58.039 33.333 0.00 0.00 0.00 3.49
7760 17106 9.780413 CCTTAGAGATTTTTCAGAAATTGCTAC 57.220 33.333 0.00 0.00 0.00 3.58
7764 17110 8.248945 AGAGATTTTTCAGAAATTGCTACATGG 58.751 33.333 0.00 0.00 0.00 3.66
7765 17111 7.325694 AGATTTTTCAGAAATTGCTACATGGG 58.674 34.615 0.00 0.00 0.00 4.00
7766 17112 4.454728 TTTCAGAAATTGCTACATGGGC 57.545 40.909 0.00 1.45 0.00 5.36
7767 17113 2.378038 TCAGAAATTGCTACATGGGCC 58.622 47.619 0.00 0.00 0.00 5.80
7768 17114 2.025037 TCAGAAATTGCTACATGGGCCT 60.025 45.455 4.53 0.00 0.00 5.19
7769 17115 3.201930 TCAGAAATTGCTACATGGGCCTA 59.798 43.478 4.53 0.00 0.00 3.93
7770 17116 3.567164 CAGAAATTGCTACATGGGCCTAG 59.433 47.826 4.53 0.00 0.00 3.02
7771 17117 3.459598 AGAAATTGCTACATGGGCCTAGA 59.540 43.478 4.53 0.00 0.00 2.43
7772 17118 3.498774 AATTGCTACATGGGCCTAGAG 57.501 47.619 4.53 0.00 0.00 2.43
7773 17119 0.469917 TTGCTACATGGGCCTAGAGC 59.530 55.000 4.53 8.14 42.60 4.09
7784 17130 2.947127 GCCTAGAGCCCATCTCAAAT 57.053 50.000 0.00 0.00 44.35 2.32
7785 17131 3.220674 GCCTAGAGCCCATCTCAAATT 57.779 47.619 0.00 0.00 44.35 1.82
7786 17132 3.560105 GCCTAGAGCCCATCTCAAATTT 58.440 45.455 0.00 0.00 44.35 1.82
7787 17133 3.567585 GCCTAGAGCCCATCTCAAATTTC 59.432 47.826 0.00 0.00 44.35 2.17
7788 17134 4.785301 CCTAGAGCCCATCTCAAATTTCA 58.215 43.478 0.00 0.00 44.35 2.69
7789 17135 4.820716 CCTAGAGCCCATCTCAAATTTCAG 59.179 45.833 0.00 0.00 44.35 3.02
7790 17136 4.581309 AGAGCCCATCTCAAATTTCAGA 57.419 40.909 0.00 0.00 44.35 3.27
7791 17137 4.927049 AGAGCCCATCTCAAATTTCAGAA 58.073 39.130 0.00 0.00 44.35 3.02
7792 17138 5.516984 AGAGCCCATCTCAAATTTCAGAAT 58.483 37.500 0.00 0.00 44.35 2.40
8710 18216 6.200854 CAGTAAACAGGCAATCAAGTTTTTCC 59.799 38.462 0.00 0.00 35.90 3.13
8727 18233 6.040504 AGTTTTTCCATAACCAACCAAGACTC 59.959 38.462 0.00 0.00 0.00 3.36
8814 18332 9.116067 CAAAATCCGTATAATACAAGGAAAGGA 57.884 33.333 0.00 0.00 34.35 3.36
8815 18333 9.689501 AAAATCCGTATAATACAAGGAAAGGAA 57.310 29.630 0.00 0.00 34.35 3.36
8816 18334 9.689501 AAATCCGTATAATACAAGGAAAGGAAA 57.310 29.630 0.00 0.00 34.35 3.13
8895 18426 1.017387 GCCCGAGCTTTACTTCCATG 58.983 55.000 0.00 0.00 35.50 3.66
8901 18432 5.116180 CCGAGCTTTACTTCCATGTCAATA 58.884 41.667 0.00 0.00 0.00 1.90
8919 18508 7.216494 TGTCAATACAAGTCACATCTTCTTGA 58.784 34.615 10.41 0.00 40.35 3.02
8976 18581 0.169230 CAGTCCTCCTCGACTCAACG 59.831 60.000 0.00 0.00 41.23 4.10
9089 18752 0.031585 TACTCGACTGCTGCGTTTGT 59.968 50.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 221 1.514087 GGGCTCCACGTCGTCAATA 59.486 57.895 0.00 0.00 0.00 1.90
269 277 2.777692 GGTCCATGGAGATAGGGTTTCA 59.222 50.000 16.81 0.00 0.00 2.69
300 309 3.118482 TCTCCCTAATTCTTGCTCTGCTG 60.118 47.826 0.00 0.00 0.00 4.41
326 337 2.751688 GGAGGTAAACCCGGCACA 59.248 61.111 0.00 0.00 38.74 4.57
435 446 1.004394 TCCTCTCCTCTAGCAACGACA 59.996 52.381 0.00 0.00 0.00 4.35
459 470 0.116541 TTCGAACTCCTCCCCCTCTT 59.883 55.000 0.00 0.00 0.00 2.85
497 510 2.961669 CTTGTTCGAAACCGCCCGG 61.962 63.158 0.00 4.96 42.03 5.73
853 871 0.393808 TCGAGGCTGTTTTATGGGCC 60.394 55.000 0.00 0.00 44.38 5.80
1334 1370 0.103937 GACGAGCTCCATGAAGAGGG 59.896 60.000 8.47 0.00 34.26 4.30
1487 1523 1.589630 CCGACCATGACGTTCTCCA 59.410 57.895 0.00 0.00 0.00 3.86
1566 1602 1.028868 AGCACTCCTCGTACGGTACC 61.029 60.000 16.52 0.16 0.00 3.34
1654 1690 6.892658 TGCCTATTTACTCAACAACATGTT 57.107 33.333 4.92 4.92 42.08 2.71
1657 1693 8.806146 AGAAATTGCCTATTTACTCAACAACAT 58.194 29.630 0.00 0.00 36.59 2.71
1659 1695 7.481798 CGAGAAATTGCCTATTTACTCAACAAC 59.518 37.037 0.00 0.00 36.59 3.32
1904 5713 2.359230 GCTGACAAGAAGGCCGCT 60.359 61.111 0.00 0.00 0.00 5.52
2009 5818 1.584308 GATTACGCGACTGCTCACTTC 59.416 52.381 15.93 0.00 39.65 3.01
2059 5868 1.263356 CCCTTCTGGTTCCTGTACGA 58.737 55.000 0.00 0.00 0.00 3.43
2282 11574 0.817654 CTGAGACGTGGGCTATCACA 59.182 55.000 0.00 0.00 37.50 3.58
2284 11576 1.957177 GATCTGAGACGTGGGCTATCA 59.043 52.381 0.00 0.00 0.00 2.15
2285 11577 1.957177 TGATCTGAGACGTGGGCTATC 59.043 52.381 0.00 0.00 0.00 2.08
2286 11578 2.073252 TGATCTGAGACGTGGGCTAT 57.927 50.000 0.00 0.00 0.00 2.97
2287 11579 1.683385 CATGATCTGAGACGTGGGCTA 59.317 52.381 0.00 0.00 0.00 3.93
2288 11580 0.463204 CATGATCTGAGACGTGGGCT 59.537 55.000 0.00 0.00 0.00 5.19
2292 11586 0.531532 GGGCCATGATCTGAGACGTG 60.532 60.000 4.39 0.00 0.00 4.49
2373 11672 2.435938 GTTGCGGGATTGAGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
2374 11673 3.508840 GGTTGCGGGATTGAGCCG 61.509 66.667 0.00 0.00 0.00 5.52
2375 11674 3.140814 GGGTTGCGGGATTGAGCC 61.141 66.667 0.00 0.00 0.00 4.70
2376 11675 2.361104 TGGGTTGCGGGATTGAGC 60.361 61.111 0.00 0.00 0.00 4.26
2377 11676 2.398554 CGTGGGTTGCGGGATTGAG 61.399 63.158 0.00 0.00 0.00 3.02
2483 11826 7.344095 TCCTTATAAGGGTTTCTCTTCTACG 57.656 40.000 27.65 0.55 46.47 3.51
3138 12482 2.158310 ACCTATGTGATCGGAGATCCCA 60.158 50.000 7.47 2.96 45.12 4.37
3300 12644 8.457238 AAGCTGTCAGAAAATTAAGAAACTCT 57.543 30.769 3.32 0.00 0.00 3.24
3488 12832 6.823689 AGAATTAACGGCATTAGACACATCTT 59.176 34.615 0.00 0.00 36.29 2.40
3938 13282 4.258543 TGAGAAGGTGTTGAGTCGTTTTT 58.741 39.130 0.00 0.00 0.00 1.94
4099 13443 3.992943 ACTGATATTCGGAACCAACCA 57.007 42.857 0.00 0.00 0.00 3.67
4436 13780 2.101582 GCTAGACTGACCACCATTCGAT 59.898 50.000 0.00 0.00 30.61 3.59
4742 14086 5.634118 AGACCTTTGGTGATGATTTCTTCA 58.366 37.500 0.00 0.00 35.25 3.02
4813 14157 4.275810 ACACATGATGAAAATCCTGAGGG 58.724 43.478 0.00 0.00 0.00 4.30
4982 14326 7.496346 TTTCCAGTAGTGAAATCTGAGGTAT 57.504 36.000 0.00 0.00 0.00 2.73
5075 14419 2.649531 TGTGTCGATCCCCAAAAAGT 57.350 45.000 0.00 0.00 0.00 2.66
5727 15071 4.819630 CGGCTAGCCAAGTTGGATTTAATA 59.180 41.667 32.47 2.47 40.96 0.98
6521 15865 2.821969 GAGCAGAATTCAAGGGCAAAGA 59.178 45.455 8.44 0.00 0.00 2.52
6919 16263 0.912486 AAGGCGTTCAAGGAGGCTAT 59.088 50.000 0.00 0.00 39.97 2.97
6973 16317 1.678598 AACGTGTTCTGGGTCACCGA 61.679 55.000 0.00 0.00 40.75 4.69
7278 16622 1.344065 TCCCGCTCCTACTGTTTTCA 58.656 50.000 0.00 0.00 0.00 2.69
7364 16708 2.032528 CTGACAAGAAGGCCGCCA 59.967 61.111 13.15 0.00 0.00 5.69
7468 16812 2.209064 TACGCGACTGCTCACTTCCC 62.209 60.000 15.93 0.00 39.65 3.97
7520 16864 1.891150 GTCCTTCTGGTTCCTGTACGA 59.109 52.381 0.00 0.00 34.23 3.43
7539 16883 1.366366 CAGGTCTCCGAAACCACGT 59.634 57.895 0.00 0.00 39.39 4.49
7581 16925 1.313812 GGTGACTCCATCTCGTCCGT 61.314 60.000 0.00 0.00 35.97 4.69
7588 16932 3.461773 CCGCCGGTGACTCCATCT 61.462 66.667 18.79 0.00 35.57 2.90
7731 17077 6.782082 ATTTCTGAAAAATCTCTAAGGGCC 57.218 37.500 6.95 0.00 0.00 5.80
7732 17078 6.533012 GCAATTTCTGAAAAATCTCTAAGGGC 59.467 38.462 6.95 0.00 0.00 5.19
7733 17079 7.834803 AGCAATTTCTGAAAAATCTCTAAGGG 58.165 34.615 6.95 0.00 0.00 3.95
7734 17080 9.780413 GTAGCAATTTCTGAAAAATCTCTAAGG 57.220 33.333 6.95 0.00 0.00 2.69
7738 17084 8.248945 CCATGTAGCAATTTCTGAAAAATCTCT 58.751 33.333 6.95 3.61 0.00 3.10
7739 17085 7.490402 CCCATGTAGCAATTTCTGAAAAATCTC 59.510 37.037 6.95 0.00 0.00 2.75
7740 17086 7.325694 CCCATGTAGCAATTTCTGAAAAATCT 58.674 34.615 6.95 6.75 0.00 2.40
7741 17087 6.036408 GCCCATGTAGCAATTTCTGAAAAATC 59.964 38.462 6.95 0.00 0.00 2.17
7742 17088 5.876460 GCCCATGTAGCAATTTCTGAAAAAT 59.124 36.000 6.95 0.00 0.00 1.82
7743 17089 5.237048 GCCCATGTAGCAATTTCTGAAAAA 58.763 37.500 6.95 0.00 0.00 1.94
7744 17090 4.322650 GGCCCATGTAGCAATTTCTGAAAA 60.323 41.667 6.95 0.00 0.00 2.29
7745 17091 3.195396 GGCCCATGTAGCAATTTCTGAAA 59.805 43.478 5.15 5.15 0.00 2.69
7746 17092 2.760092 GGCCCATGTAGCAATTTCTGAA 59.240 45.455 7.22 0.00 0.00 3.02
7747 17093 2.025037 AGGCCCATGTAGCAATTTCTGA 60.025 45.455 0.00 0.00 0.00 3.27
7748 17094 2.381911 AGGCCCATGTAGCAATTTCTG 58.618 47.619 0.00 0.00 0.00 3.02
7749 17095 2.834638 AGGCCCATGTAGCAATTTCT 57.165 45.000 0.00 0.00 0.00 2.52
7750 17096 3.817647 CTCTAGGCCCATGTAGCAATTTC 59.182 47.826 0.00 0.00 0.00 2.17
7751 17097 3.825328 CTCTAGGCCCATGTAGCAATTT 58.175 45.455 0.00 0.00 0.00 1.82
7752 17098 2.487986 GCTCTAGGCCCATGTAGCAATT 60.488 50.000 0.00 0.00 34.27 2.32
7753 17099 1.072965 GCTCTAGGCCCATGTAGCAAT 59.927 52.381 0.00 0.00 34.27 3.56
7754 17100 0.469917 GCTCTAGGCCCATGTAGCAA 59.530 55.000 0.00 0.00 34.27 3.91
7755 17101 2.136791 GCTCTAGGCCCATGTAGCA 58.863 57.895 0.00 0.00 34.27 3.49
7765 17111 2.947127 ATTTGAGATGGGCTCTAGGC 57.053 50.000 0.00 0.00 44.27 3.93
7766 17112 4.785301 TGAAATTTGAGATGGGCTCTAGG 58.215 43.478 0.00 0.00 44.27 3.02
7767 17113 5.678583 TCTGAAATTTGAGATGGGCTCTAG 58.321 41.667 2.95 0.00 44.27 2.43
7768 17114 5.698741 TCTGAAATTTGAGATGGGCTCTA 57.301 39.130 2.95 0.00 44.27 2.43
7769 17115 4.581309 TCTGAAATTTGAGATGGGCTCT 57.419 40.909 2.95 0.00 44.27 4.09
7770 17116 5.848833 ATTCTGAAATTTGAGATGGGCTC 57.151 39.130 8.23 0.00 44.21 4.70
7771 17117 6.837568 ACATATTCTGAAATTTGAGATGGGCT 59.162 34.615 8.23 0.00 30.88 5.19
7772 17118 6.921857 CACATATTCTGAAATTTGAGATGGGC 59.078 38.462 8.23 0.00 30.88 5.36
7773 17119 7.431249 CCACATATTCTGAAATTTGAGATGGG 58.569 38.462 8.23 5.25 30.88 4.00
7774 17120 7.431249 CCCACATATTCTGAAATTTGAGATGG 58.569 38.462 14.03 14.03 30.88 3.51
7775 17121 6.921857 GCCCACATATTCTGAAATTTGAGATG 59.078 38.462 8.23 6.68 30.88 2.90
7776 17122 6.238842 CGCCCACATATTCTGAAATTTGAGAT 60.239 38.462 8.23 2.26 30.88 2.75
7777 17123 5.066375 CGCCCACATATTCTGAAATTTGAGA 59.934 40.000 2.95 2.95 30.88 3.27
7778 17124 5.276270 CGCCCACATATTCTGAAATTTGAG 58.724 41.667 0.00 0.00 30.88 3.02
7779 17125 4.439974 GCGCCCACATATTCTGAAATTTGA 60.440 41.667 0.00 0.00 30.88 2.69
7780 17126 3.798337 GCGCCCACATATTCTGAAATTTG 59.202 43.478 0.00 0.00 32.13 2.32
7781 17127 3.701040 AGCGCCCACATATTCTGAAATTT 59.299 39.130 2.29 0.00 0.00 1.82
7782 17128 3.290710 AGCGCCCACATATTCTGAAATT 58.709 40.909 2.29 0.00 0.00 1.82
7783 17129 2.936202 AGCGCCCACATATTCTGAAAT 58.064 42.857 2.29 0.00 0.00 2.17
7784 17130 2.418368 AGCGCCCACATATTCTGAAA 57.582 45.000 2.29 0.00 0.00 2.69
7785 17131 2.016318 CAAGCGCCCACATATTCTGAA 58.984 47.619 2.29 0.00 0.00 3.02
7786 17132 1.667236 CAAGCGCCCACATATTCTGA 58.333 50.000 2.29 0.00 0.00 3.27
7787 17133 0.664761 CCAAGCGCCCACATATTCTG 59.335 55.000 2.29 0.00 0.00 3.02
7788 17134 0.466189 CCCAAGCGCCCACATATTCT 60.466 55.000 2.29 0.00 0.00 2.40
7789 17135 0.751643 ACCCAAGCGCCCACATATTC 60.752 55.000 2.29 0.00 0.00 1.75
7790 17136 1.037030 CACCCAAGCGCCCACATATT 61.037 55.000 2.29 0.00 0.00 1.28
7791 17137 1.453745 CACCCAAGCGCCCACATAT 60.454 57.895 2.29 0.00 0.00 1.78
7792 17138 2.045438 CACCCAAGCGCCCACATA 60.045 61.111 2.29 0.00 0.00 2.29
8710 18216 5.711976 AGAATTGGAGTCTTGGTTGGTTATG 59.288 40.000 0.00 0.00 0.00 1.90
8727 18233 6.016360 TCTGTTACCACACATCAAAGAATTGG 60.016 38.462 0.00 0.00 37.15 3.16
8895 18426 7.623089 GCTCAAGAAGATGTGACTTGTATTGAC 60.623 40.741 0.00 0.00 40.89 3.18
8901 18432 4.077300 TGCTCAAGAAGATGTGACTTGT 57.923 40.909 0.00 0.00 40.89 3.16
8919 18508 3.623510 GCCGAGCTTTAAATAGACTTGCT 59.376 43.478 0.00 0.00 0.00 3.91
8976 18581 0.399806 AGGAGGAGGAAGAGCCATCC 60.400 60.000 0.00 0.00 40.02 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.