Multiple sequence alignment - TraesCS1D01G099000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G099000 chr1D 100.000 3197 0 0 1 3197 86204014 86207210 0.000000e+00 5904.0
1 TraesCS1D01G099000 chr1D 79.856 278 54 2 1031 1307 79142461 79142185 5.410000e-48 202.0
2 TraesCS1D01G099000 chr3A 82.611 1777 263 34 1431 3192 710667024 710665279 0.000000e+00 1528.0
3 TraesCS1D01G099000 chr3D 81.633 1764 255 41 1436 3190 613840171 613841874 0.000000e+00 1399.0
4 TraesCS1D01G099000 chr3D 87.658 713 66 11 9 699 554164366 554163654 0.000000e+00 809.0
5 TraesCS1D01G099000 chr3D 78.371 356 65 9 1001 1353 613839604 613839950 1.490000e-53 220.0
6 TraesCS1D01G099000 chr1A 86.987 1145 134 14 1852 2986 586889226 586888087 0.000000e+00 1275.0
7 TraesCS1D01G099000 chr1A 82.768 708 95 13 1001 1687 586898827 586898126 9.810000e-170 606.0
8 TraesCS1D01G099000 chr1A 73.391 699 142 30 20 690 276115834 276115152 1.490000e-53 220.0
9 TraesCS1D01G099000 chr1A 78.491 265 55 2 1030 1293 97809864 97809601 4.240000e-39 172.0
10 TraesCS1D01G099000 chr1A 87.097 124 14 2 1734 1856 586894430 586894308 4.300000e-29 139.0
11 TraesCS1D01G099000 chr5D 91.089 707 43 10 1 690 434813093 434813796 0.000000e+00 939.0
12 TraesCS1D01G099000 chr5D 89.762 713 47 5 1 690 98243981 98244690 0.000000e+00 889.0
13 TraesCS1D01G099000 chr5D 88.260 707 64 7 1 690 238699369 238700073 0.000000e+00 828.0
14 TraesCS1D01G099000 chr5D 100.000 28 0 0 2796 2823 500978107 500978134 6.000000e-03 52.8
15 TraesCS1D01G099000 chr7B 90.896 703 47 6 3 690 43215198 43214498 0.000000e+00 928.0
16 TraesCS1D01G099000 chr7B 74.120 483 94 26 161 622 530493993 530493521 1.520000e-38 171.0
17 TraesCS1D01G099000 chr7B 100.000 28 0 0 662 689 727122235 727122262 6.000000e-03 52.8
18 TraesCS1D01G099000 chr2B 90.694 677 47 6 1 663 526881445 526882119 0.000000e+00 887.0
19 TraesCS1D01G099000 chr2B 78.348 351 63 8 2420 2759 693335638 693335986 6.950000e-52 215.0
20 TraesCS1D01G099000 chr2B 77.193 285 65 0 1025 1309 693321656 693321940 1.970000e-37 167.0
21 TraesCS1D01G099000 chr2B 75.068 369 86 6 999 1364 693447984 693448349 1.970000e-37 167.0
22 TraesCS1D01G099000 chr2B 77.305 282 58 5 1031 1309 693837950 693838228 9.180000e-36 161.0
23 TraesCS1D01G099000 chr1B 89.614 674 56 5 1 663 588142651 588141981 0.000000e+00 845.0
24 TraesCS1D01G099000 chr1B 80.144 277 55 0 1031 1307 130356412 130356136 1.160000e-49 207.0
25 TraesCS1D01G099000 chr7D 88.079 713 62 9 1 690 127016646 127017358 0.000000e+00 824.0
26 TraesCS1D01G099000 chr7D 88.085 705 64 8 1 690 610450945 610451644 0.000000e+00 819.0
27 TraesCS1D01G099000 chr6B 75.785 446 93 15 2420 2855 158167668 158168108 8.990000e-51 211.0
28 TraesCS1D01G099000 chr4A 78.439 269 48 7 209 472 619421624 619421361 1.970000e-37 167.0
29 TraesCS1D01G099000 chr5B 76.163 172 19 12 534 690 558292480 558292316 1.590000e-08 71.3
30 TraesCS1D01G099000 chr6D 90.476 42 3 1 649 689 300426312 300426353 2.000000e-03 54.7
31 TraesCS1D01G099000 chr5A 100.000 29 0 0 662 690 158911259 158911287 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G099000 chr1D 86204014 86207210 3196 False 5904.0 5904 100.0000 1 3197 1 chr1D.!!$F1 3196
1 TraesCS1D01G099000 chr3A 710665279 710667024 1745 True 1528.0 1528 82.6110 1431 3192 1 chr3A.!!$R1 1761
2 TraesCS1D01G099000 chr3D 613839604 613841874 2270 False 809.5 1399 80.0020 1001 3190 2 chr3D.!!$F1 2189
3 TraesCS1D01G099000 chr3D 554163654 554164366 712 True 809.0 809 87.6580 9 699 1 chr3D.!!$R1 690
4 TraesCS1D01G099000 chr1A 586888087 586889226 1139 True 1275.0 1275 86.9870 1852 2986 1 chr1A.!!$R3 1134
5 TraesCS1D01G099000 chr1A 586894308 586898827 4519 True 372.5 606 84.9325 1001 1856 2 chr1A.!!$R4 855
6 TraesCS1D01G099000 chr1A 276115152 276115834 682 True 220.0 220 73.3910 20 690 1 chr1A.!!$R2 670
7 TraesCS1D01G099000 chr5D 434813093 434813796 703 False 939.0 939 91.0890 1 690 1 chr5D.!!$F3 689
8 TraesCS1D01G099000 chr5D 98243981 98244690 709 False 889.0 889 89.7620 1 690 1 chr5D.!!$F1 689
9 TraesCS1D01G099000 chr5D 238699369 238700073 704 False 828.0 828 88.2600 1 690 1 chr5D.!!$F2 689
10 TraesCS1D01G099000 chr7B 43214498 43215198 700 True 928.0 928 90.8960 3 690 1 chr7B.!!$R1 687
11 TraesCS1D01G099000 chr2B 526881445 526882119 674 False 887.0 887 90.6940 1 663 1 chr2B.!!$F1 662
12 TraesCS1D01G099000 chr1B 588141981 588142651 670 True 845.0 845 89.6140 1 663 1 chr1B.!!$R2 662
13 TraesCS1D01G099000 chr7D 127016646 127017358 712 False 824.0 824 88.0790 1 690 1 chr7D.!!$F1 689
14 TraesCS1D01G099000 chr7D 610450945 610451644 699 False 819.0 819 88.0850 1 690 1 chr7D.!!$F2 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 934 0.030235 TCATCCGCCACTCGTAATCG 59.970 55.0 0.0 0.0 36.19 3.34 F
887 939 0.043053 CGCCACTCGTAATCGCAATG 60.043 55.0 0.0 0.0 36.96 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 5598 0.029035 CGCAGTAATCGTAGCTCGGT 59.971 55.0 0.00 0.0 40.32 4.69 R
2717 6616 0.958091 CATTCAAGTTGTTCCGCCCA 59.042 50.0 2.11 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 1.821258 GGTCCAGGTGACGGTATCC 59.179 63.158 0.00 0.00 45.46 2.59
284 285 1.066605 CATTAGGTGGCTGCTCATTGC 59.933 52.381 0.00 0.00 43.25 3.56
326 327 2.223044 GGACTGTGCGTAATAAGCTTGC 60.223 50.000 9.86 3.75 35.28 4.01
417 418 2.047655 CCGCTTAGCCGTCACCAA 60.048 61.111 0.00 0.00 0.00 3.67
547 557 1.774046 TTGACCCGCCGTCGTTTTTC 61.774 55.000 0.00 0.00 45.23 2.29
634 680 5.163395 TGACTGTGTGTGGTGAACTTATGTA 60.163 40.000 0.00 0.00 0.00 2.29
694 746 4.211794 CGAAAGCCTTTTTCAGTAACCGTA 59.788 41.667 0.00 0.00 0.00 4.02
699 751 4.512571 GCCTTTTTCAGTAACCGTAGACAA 59.487 41.667 0.00 0.00 0.00 3.18
700 752 5.559608 GCCTTTTTCAGTAACCGTAGACAAC 60.560 44.000 0.00 0.00 0.00 3.32
701 753 5.756833 CCTTTTTCAGTAACCGTAGACAACT 59.243 40.000 0.00 0.00 0.00 3.16
702 754 6.292703 CCTTTTTCAGTAACCGTAGACAACTG 60.293 42.308 0.00 0.00 39.10 3.16
703 755 3.293311 TCAGTAACCGTAGACAACTGC 57.707 47.619 0.00 0.00 37.94 4.40
704 756 2.624364 TCAGTAACCGTAGACAACTGCA 59.376 45.455 0.00 0.00 37.94 4.41
705 757 3.257375 TCAGTAACCGTAGACAACTGCAT 59.743 43.478 0.00 0.00 37.94 3.96
706 758 3.994392 CAGTAACCGTAGACAACTGCATT 59.006 43.478 0.00 0.00 32.02 3.56
707 759 3.994392 AGTAACCGTAGACAACTGCATTG 59.006 43.478 7.16 7.16 44.60 2.82
708 760 1.808411 ACCGTAGACAACTGCATTGG 58.192 50.000 11.76 0.00 43.20 3.16
709 761 1.346395 ACCGTAGACAACTGCATTGGA 59.654 47.619 11.76 0.00 43.20 3.53
710 762 1.732259 CCGTAGACAACTGCATTGGAC 59.268 52.381 11.76 6.88 43.20 4.02
711 763 2.412870 CGTAGACAACTGCATTGGACA 58.587 47.619 11.76 0.00 43.20 4.02
712 764 2.157668 CGTAGACAACTGCATTGGACAC 59.842 50.000 11.76 6.46 43.20 3.67
713 765 1.609208 AGACAACTGCATTGGACACC 58.391 50.000 11.76 0.00 43.20 4.16
714 766 1.143684 AGACAACTGCATTGGACACCT 59.856 47.619 11.76 1.63 43.20 4.00
715 767 2.371841 AGACAACTGCATTGGACACCTA 59.628 45.455 11.76 0.00 43.20 3.08
716 768 2.484264 GACAACTGCATTGGACACCTAC 59.516 50.000 11.76 0.00 43.20 3.18
717 769 2.158682 ACAACTGCATTGGACACCTACA 60.159 45.455 11.76 0.00 43.20 2.74
718 770 2.185004 ACTGCATTGGACACCTACAC 57.815 50.000 0.00 0.00 0.00 2.90
719 771 1.078709 CTGCATTGGACACCTACACG 58.921 55.000 0.00 0.00 0.00 4.49
720 772 0.394938 TGCATTGGACACCTACACGT 59.605 50.000 0.00 0.00 0.00 4.49
721 773 0.796312 GCATTGGACACCTACACGTG 59.204 55.000 15.48 15.48 39.75 4.49
722 774 1.438651 CATTGGACACCTACACGTGG 58.561 55.000 21.57 4.43 38.11 4.94
723 775 0.321298 ATTGGACACCTACACGTGGC 60.321 55.000 21.57 0.00 41.40 5.01
724 776 1.404479 TTGGACACCTACACGTGGCT 61.404 55.000 21.57 1.59 41.85 4.75
725 777 1.374252 GGACACCTACACGTGGCTG 60.374 63.158 21.57 11.04 41.85 4.85
726 778 1.374252 GACACCTACACGTGGCTGG 60.374 63.158 21.57 19.43 38.84 4.85
727 779 2.047274 CACCTACACGTGGCTGGG 60.047 66.667 21.57 13.58 0.00 4.45
728 780 3.319198 ACCTACACGTGGCTGGGG 61.319 66.667 21.57 15.24 0.00 4.96
729 781 4.778143 CCTACACGTGGCTGGGGC 62.778 72.222 21.57 0.00 37.82 5.80
739 791 4.032653 GCTGGGGCCAAGCATTAA 57.967 55.556 28.33 0.00 0.00 1.40
740 792 1.517361 GCTGGGGCCAAGCATTAAC 59.483 57.895 28.33 0.00 0.00 2.01
741 793 1.809207 CTGGGGCCAAGCATTAACG 59.191 57.895 4.39 0.00 0.00 3.18
742 794 2.283472 CTGGGGCCAAGCATTAACGC 62.283 60.000 4.39 0.00 0.00 4.84
743 795 2.052104 GGGGCCAAGCATTAACGCT 61.052 57.895 4.39 0.00 46.67 5.07
744 796 1.433471 GGGCCAAGCATTAACGCTC 59.567 57.895 4.39 0.00 42.89 5.03
745 797 1.062525 GGCCAAGCATTAACGCTCG 59.937 57.895 0.00 0.00 42.89 5.03
746 798 1.644786 GGCCAAGCATTAACGCTCGT 61.645 55.000 0.00 0.00 42.89 4.18
747 799 0.521242 GCCAAGCATTAACGCTCGTG 60.521 55.000 0.00 0.00 42.89 4.35
748 800 0.096976 CCAAGCATTAACGCTCGTGG 59.903 55.000 0.00 0.00 42.89 4.94
749 801 0.096976 CAAGCATTAACGCTCGTGGG 59.903 55.000 0.00 0.00 42.89 4.61
750 802 0.321298 AAGCATTAACGCTCGTGGGT 60.321 50.000 0.00 0.86 42.89 4.51
752 804 0.096454 GCATTAACGCTCGTGGGTTC 59.904 55.000 21.04 5.78 46.01 3.62
753 805 1.722011 CATTAACGCTCGTGGGTTCT 58.278 50.000 21.04 9.28 46.01 3.01
754 806 1.659098 CATTAACGCTCGTGGGTTCTC 59.341 52.381 21.04 0.00 46.01 2.87
755 807 0.037975 TTAACGCTCGTGGGTTCTCC 60.038 55.000 21.04 0.00 46.01 3.71
756 808 0.896940 TAACGCTCGTGGGTTCTCCT 60.897 55.000 21.04 2.55 46.01 3.69
757 809 2.156051 AACGCTCGTGGGTTCTCCTC 62.156 60.000 13.38 0.00 44.42 3.71
758 810 2.636412 CGCTCGTGGGTTCTCCTCA 61.636 63.158 0.00 0.00 36.20 3.86
759 811 1.079750 GCTCGTGGGTTCTCCTCAC 60.080 63.158 0.00 0.00 36.20 3.51
763 815 3.742983 GTGGGTTCTCCTCACGATC 57.257 57.895 0.00 0.00 36.20 3.69
764 816 0.895530 GTGGGTTCTCCTCACGATCA 59.104 55.000 0.00 0.00 36.20 2.92
765 817 1.482593 GTGGGTTCTCCTCACGATCAT 59.517 52.381 0.00 0.00 36.20 2.45
766 818 1.482182 TGGGTTCTCCTCACGATCATG 59.518 52.381 0.00 0.00 36.20 3.07
767 819 1.202580 GGGTTCTCCTCACGATCATGG 60.203 57.143 0.00 0.00 0.00 3.66
768 820 1.757118 GGTTCTCCTCACGATCATGGA 59.243 52.381 0.00 0.00 0.00 3.41
769 821 2.482142 GGTTCTCCTCACGATCATGGAC 60.482 54.545 0.00 0.00 0.00 4.02
770 822 1.403814 TCTCCTCACGATCATGGACC 58.596 55.000 0.00 0.00 0.00 4.46
771 823 1.063642 TCTCCTCACGATCATGGACCT 60.064 52.381 0.00 0.00 0.00 3.85
772 824 1.339610 CTCCTCACGATCATGGACCTC 59.660 57.143 0.00 0.00 0.00 3.85
773 825 0.031314 CCTCACGATCATGGACCTCG 59.969 60.000 0.00 0.00 38.34 4.63
774 826 0.031314 CTCACGATCATGGACCTCGG 59.969 60.000 5.91 0.00 36.74 4.63
775 827 1.592669 CACGATCATGGACCTCGGC 60.593 63.158 5.91 0.00 36.74 5.54
776 828 2.029666 CGATCATGGACCTCGGCC 59.970 66.667 0.00 0.00 0.00 6.13
777 829 2.029666 GATCATGGACCTCGGCCG 59.970 66.667 22.12 22.12 0.00 6.13
778 830 3.521529 GATCATGGACCTCGGCCGG 62.522 68.421 27.83 16.14 0.00 6.13
784 836 2.521224 GACCTCGGCCGGGTCTAT 60.521 66.667 37.75 19.74 46.89 1.98
785 837 1.228367 GACCTCGGCCGGGTCTATA 60.228 63.158 37.75 17.01 46.89 1.31
786 838 0.611340 GACCTCGGCCGGGTCTATAT 60.611 60.000 37.75 19.47 46.89 0.86
787 839 0.700564 ACCTCGGCCGGGTCTATATA 59.299 55.000 26.30 0.00 30.15 0.86
788 840 1.340795 ACCTCGGCCGGGTCTATATAG 60.341 57.143 26.30 11.13 30.15 1.31
789 841 1.390565 CTCGGCCGGGTCTATATAGG 58.609 60.000 27.83 0.00 0.00 2.57
790 842 0.033796 TCGGCCGGGTCTATATAGGG 60.034 60.000 27.83 4.39 0.00 3.53
791 843 0.324091 CGGCCGGGTCTATATAGGGT 60.324 60.000 20.10 0.00 0.00 4.34
792 844 1.064463 CGGCCGGGTCTATATAGGGTA 60.064 57.143 20.10 0.00 0.00 3.69
793 845 2.382882 GGCCGGGTCTATATAGGGTAC 58.617 57.143 9.89 1.11 0.00 3.34
794 846 2.019984 GCCGGGTCTATATAGGGTACG 58.980 57.143 9.89 9.27 0.00 3.67
795 847 2.619074 GCCGGGTCTATATAGGGTACGT 60.619 54.545 9.89 0.00 0.00 3.57
796 848 3.370527 GCCGGGTCTATATAGGGTACGTA 60.371 52.174 9.89 0.00 0.00 3.57
797 849 4.446371 CCGGGTCTATATAGGGTACGTAG 58.554 52.174 9.89 0.00 30.08 3.51
798 850 4.162320 CCGGGTCTATATAGGGTACGTAGA 59.838 50.000 9.89 0.00 30.08 2.59
799 851 5.338381 CCGGGTCTATATAGGGTACGTAGAA 60.338 48.000 9.89 0.00 30.08 2.10
800 852 6.352516 CGGGTCTATATAGGGTACGTAGAAT 58.647 44.000 9.89 0.00 30.08 2.40
801 853 6.481644 CGGGTCTATATAGGGTACGTAGAATC 59.518 46.154 9.89 0.00 30.08 2.52
802 854 6.770303 GGGTCTATATAGGGTACGTAGAATCC 59.230 46.154 9.89 0.00 30.08 3.01
803 855 7.366371 GGGTCTATATAGGGTACGTAGAATCCT 60.366 44.444 9.89 3.83 30.08 3.24
804 856 7.714813 GGTCTATATAGGGTACGTAGAATCCTC 59.285 44.444 9.89 0.00 30.08 3.71
805 857 7.437862 GTCTATATAGGGTACGTAGAATCCTCG 59.562 44.444 9.89 0.00 30.08 4.63
806 858 1.316651 AGGGTACGTAGAATCCTCGC 58.683 55.000 0.00 0.00 0.00 5.03
807 859 1.133853 AGGGTACGTAGAATCCTCGCT 60.134 52.381 0.00 0.00 0.00 4.93
808 860 1.266446 GGGTACGTAGAATCCTCGCTC 59.734 57.143 0.00 0.00 0.00 5.03
809 861 1.266446 GGTACGTAGAATCCTCGCTCC 59.734 57.143 0.00 0.00 0.00 4.70
810 862 1.266446 GTACGTAGAATCCTCGCTCCC 59.734 57.143 0.00 0.00 0.00 4.30
811 863 1.108132 ACGTAGAATCCTCGCTCCCC 61.108 60.000 0.00 0.00 0.00 4.81
812 864 0.824182 CGTAGAATCCTCGCTCCCCT 60.824 60.000 0.00 0.00 0.00 4.79
813 865 0.963225 GTAGAATCCTCGCTCCCCTC 59.037 60.000 0.00 0.00 0.00 4.30
814 866 0.854218 TAGAATCCTCGCTCCCCTCT 59.146 55.000 0.00 0.00 0.00 3.69
815 867 0.469144 AGAATCCTCGCTCCCCTCTC 60.469 60.000 0.00 0.00 0.00 3.20
816 868 0.757188 GAATCCTCGCTCCCCTCTCA 60.757 60.000 0.00 0.00 0.00 3.27
817 869 1.045911 AATCCTCGCTCCCCTCTCAC 61.046 60.000 0.00 0.00 0.00 3.51
818 870 2.230189 ATCCTCGCTCCCCTCTCACA 62.230 60.000 0.00 0.00 0.00 3.58
819 871 2.716017 CCTCGCTCCCCTCTCACAC 61.716 68.421 0.00 0.00 0.00 3.82
820 872 1.979155 CTCGCTCCCCTCTCACACA 60.979 63.158 0.00 0.00 0.00 3.72
821 873 2.219325 CTCGCTCCCCTCTCACACAC 62.219 65.000 0.00 0.00 0.00 3.82
822 874 2.665603 GCTCCCCTCTCACACACC 59.334 66.667 0.00 0.00 0.00 4.16
823 875 2.217038 GCTCCCCTCTCACACACCA 61.217 63.158 0.00 0.00 0.00 4.17
824 876 1.768684 GCTCCCCTCTCACACACCAA 61.769 60.000 0.00 0.00 0.00 3.67
825 877 0.764890 CTCCCCTCTCACACACCAAA 59.235 55.000 0.00 0.00 0.00 3.28
826 878 0.472471 TCCCCTCTCACACACCAAAC 59.528 55.000 0.00 0.00 0.00 2.93
827 879 0.182537 CCCCTCTCACACACCAAACA 59.817 55.000 0.00 0.00 0.00 2.83
828 880 1.308998 CCCTCTCACACACCAAACAC 58.691 55.000 0.00 0.00 0.00 3.32
829 881 1.134098 CCCTCTCACACACCAAACACT 60.134 52.381 0.00 0.00 0.00 3.55
830 882 2.213499 CCTCTCACACACCAAACACTC 58.787 52.381 0.00 0.00 0.00 3.51
831 883 2.213499 CTCTCACACACCAAACACTCC 58.787 52.381 0.00 0.00 0.00 3.85
832 884 0.937304 CTCACACACCAAACACTCCG 59.063 55.000 0.00 0.00 0.00 4.63
833 885 0.537653 TCACACACCAAACACTCCGA 59.462 50.000 0.00 0.00 0.00 4.55
834 886 0.937304 CACACACCAAACACTCCGAG 59.063 55.000 0.00 0.00 0.00 4.63
835 887 0.828022 ACACACCAAACACTCCGAGA 59.172 50.000 1.33 0.00 0.00 4.04
836 888 1.208535 ACACACCAAACACTCCGAGAA 59.791 47.619 1.33 0.00 0.00 2.87
837 889 2.285083 CACACCAAACACTCCGAGAAA 58.715 47.619 1.33 0.00 0.00 2.52
838 890 2.878406 CACACCAAACACTCCGAGAAAT 59.122 45.455 1.33 0.00 0.00 2.17
839 891 3.315191 CACACCAAACACTCCGAGAAATT 59.685 43.478 1.33 0.00 0.00 1.82
840 892 3.564225 ACACCAAACACTCCGAGAAATTC 59.436 43.478 1.33 0.00 0.00 2.17
841 893 3.058224 CACCAAACACTCCGAGAAATTCC 60.058 47.826 1.33 0.00 0.00 3.01
842 894 2.488153 CCAAACACTCCGAGAAATTCCC 59.512 50.000 1.33 0.00 0.00 3.97
843 895 2.488153 CAAACACTCCGAGAAATTCCCC 59.512 50.000 1.33 0.00 0.00 4.81
844 896 1.657804 ACACTCCGAGAAATTCCCCT 58.342 50.000 1.33 0.00 0.00 4.79
845 897 1.985895 ACACTCCGAGAAATTCCCCTT 59.014 47.619 1.33 0.00 0.00 3.95
846 898 2.375509 ACACTCCGAGAAATTCCCCTTT 59.624 45.455 1.33 0.00 0.00 3.11
847 899 3.010420 CACTCCGAGAAATTCCCCTTTC 58.990 50.000 1.33 0.00 35.74 2.62
848 900 2.026169 ACTCCGAGAAATTCCCCTTTCC 60.026 50.000 1.33 0.00 36.06 3.13
849 901 2.239907 CTCCGAGAAATTCCCCTTTCCT 59.760 50.000 0.00 0.00 36.06 3.36
850 902 2.647802 TCCGAGAAATTCCCCTTTCCTT 59.352 45.455 0.00 0.00 36.06 3.36
851 903 3.017442 CCGAGAAATTCCCCTTTCCTTC 58.983 50.000 0.00 0.00 36.06 3.46
852 904 3.561313 CCGAGAAATTCCCCTTTCCTTCA 60.561 47.826 0.00 0.00 36.06 3.02
853 905 3.691609 CGAGAAATTCCCCTTTCCTTCAG 59.308 47.826 0.00 0.00 36.06 3.02
854 906 3.435275 AGAAATTCCCCTTTCCTTCAGC 58.565 45.455 0.00 0.00 36.06 4.26
855 907 2.238084 AATTCCCCTTTCCTTCAGCC 57.762 50.000 0.00 0.00 0.00 4.85
856 908 1.387119 ATTCCCCTTTCCTTCAGCCT 58.613 50.000 0.00 0.00 0.00 4.58
857 909 0.405585 TTCCCCTTTCCTTCAGCCTG 59.594 55.000 0.00 0.00 0.00 4.85
858 910 1.680314 CCCCTTTCCTTCAGCCTGC 60.680 63.158 0.00 0.00 0.00 4.85
859 911 1.381851 CCCTTTCCTTCAGCCTGCT 59.618 57.895 0.00 0.00 0.00 4.24
860 912 0.679321 CCCTTTCCTTCAGCCTGCTC 60.679 60.000 0.00 0.00 0.00 4.26
861 913 0.037303 CCTTTCCTTCAGCCTGCTCA 59.963 55.000 0.00 0.00 0.00 4.26
862 914 1.163554 CTTTCCTTCAGCCTGCTCAC 58.836 55.000 0.00 0.00 0.00 3.51
863 915 0.767375 TTTCCTTCAGCCTGCTCACT 59.233 50.000 0.00 0.00 0.00 3.41
864 916 0.322975 TTCCTTCAGCCTGCTCACTC 59.677 55.000 0.00 0.00 0.00 3.51
865 917 0.833409 TCCTTCAGCCTGCTCACTCA 60.833 55.000 0.00 0.00 0.00 3.41
866 918 0.252479 CCTTCAGCCTGCTCACTCAT 59.748 55.000 0.00 0.00 0.00 2.90
867 919 1.654317 CTTCAGCCTGCTCACTCATC 58.346 55.000 0.00 0.00 0.00 2.92
868 920 0.251354 TTCAGCCTGCTCACTCATCC 59.749 55.000 0.00 0.00 0.00 3.51
869 921 1.521010 CAGCCTGCTCACTCATCCG 60.521 63.158 0.00 0.00 0.00 4.18
870 922 2.894387 GCCTGCTCACTCATCCGC 60.894 66.667 0.00 0.00 0.00 5.54
871 923 2.202987 CCTGCTCACTCATCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
872 924 2.580815 CTGCTCACTCATCCGCCA 59.419 61.111 0.00 0.00 0.00 5.69
873 925 1.812922 CTGCTCACTCATCCGCCAC 60.813 63.158 0.00 0.00 0.00 5.01
874 926 2.236223 CTGCTCACTCATCCGCCACT 62.236 60.000 0.00 0.00 0.00 4.00
875 927 1.520342 GCTCACTCATCCGCCACTC 60.520 63.158 0.00 0.00 0.00 3.51
876 928 1.226802 CTCACTCATCCGCCACTCG 60.227 63.158 0.00 0.00 38.08 4.18
877 929 1.938657 CTCACTCATCCGCCACTCGT 61.939 60.000 0.00 0.00 36.19 4.18
878 930 0.678684 TCACTCATCCGCCACTCGTA 60.679 55.000 0.00 0.00 36.19 3.43
879 931 0.172578 CACTCATCCGCCACTCGTAA 59.827 55.000 0.00 0.00 36.19 3.18
880 932 1.112113 ACTCATCCGCCACTCGTAAT 58.888 50.000 0.00 0.00 36.19 1.89
881 933 1.067212 ACTCATCCGCCACTCGTAATC 59.933 52.381 0.00 0.00 36.19 1.75
882 934 0.030235 TCATCCGCCACTCGTAATCG 59.970 55.000 0.00 0.00 36.19 3.34
883 935 1.299926 ATCCGCCACTCGTAATCGC 60.300 57.895 0.00 0.00 36.96 4.58
884 936 2.011741 ATCCGCCACTCGTAATCGCA 62.012 55.000 0.00 0.00 36.96 5.10
885 937 1.807981 CCGCCACTCGTAATCGCAA 60.808 57.895 0.00 0.00 36.96 4.85
886 938 1.151777 CCGCCACTCGTAATCGCAAT 61.152 55.000 0.00 0.00 36.96 3.56
887 939 0.043053 CGCCACTCGTAATCGCAATG 60.043 55.000 0.00 0.00 36.96 2.82
888 940 0.316196 GCCACTCGTAATCGCAATGC 60.316 55.000 0.00 0.00 36.96 3.56
889 941 1.006086 CCACTCGTAATCGCAATGCA 58.994 50.000 5.91 0.00 36.96 3.96
890 942 1.396648 CCACTCGTAATCGCAATGCAA 59.603 47.619 5.91 0.00 36.96 4.08
891 943 2.032054 CCACTCGTAATCGCAATGCAAT 59.968 45.455 5.91 0.00 36.96 3.56
892 944 3.283256 CACTCGTAATCGCAATGCAATC 58.717 45.455 5.91 0.00 36.96 2.67
893 945 2.287915 ACTCGTAATCGCAATGCAATCC 59.712 45.455 5.91 0.00 36.96 3.01
894 946 2.284190 TCGTAATCGCAATGCAATCCA 58.716 42.857 5.91 0.00 36.96 3.41
895 947 2.877786 TCGTAATCGCAATGCAATCCAT 59.122 40.909 5.91 0.00 36.96 3.41
896 948 3.058983 TCGTAATCGCAATGCAATCCATC 60.059 43.478 5.91 0.00 36.96 3.51
897 949 2.806608 AATCGCAATGCAATCCATCC 57.193 45.000 5.91 0.00 31.43 3.51
898 950 1.694844 ATCGCAATGCAATCCATCCA 58.305 45.000 5.91 0.00 31.43 3.41
899 951 1.694844 TCGCAATGCAATCCATCCAT 58.305 45.000 5.91 0.00 31.43 3.41
900 952 2.861274 TCGCAATGCAATCCATCCATA 58.139 42.857 5.91 0.00 31.43 2.74
901 953 2.815503 TCGCAATGCAATCCATCCATAG 59.184 45.455 5.91 0.00 31.43 2.23
902 954 2.670229 CGCAATGCAATCCATCCATAGC 60.670 50.000 5.91 0.00 31.43 2.97
903 955 2.561419 GCAATGCAATCCATCCATAGCT 59.439 45.455 0.00 0.00 31.43 3.32
904 956 3.760151 GCAATGCAATCCATCCATAGCTA 59.240 43.478 0.00 0.00 31.43 3.32
905 957 4.142447 GCAATGCAATCCATCCATAGCTAG 60.142 45.833 0.00 0.00 31.43 3.42
906 958 4.923516 ATGCAATCCATCCATAGCTAGT 57.076 40.909 0.00 0.00 0.00 2.57
907 959 4.712051 TGCAATCCATCCATAGCTAGTT 57.288 40.909 0.00 0.00 0.00 2.24
908 960 5.052693 TGCAATCCATCCATAGCTAGTTT 57.947 39.130 0.00 0.00 0.00 2.66
909 961 5.065914 TGCAATCCATCCATAGCTAGTTTC 58.934 41.667 0.00 0.00 0.00 2.78
910 962 5.065914 GCAATCCATCCATAGCTAGTTTCA 58.934 41.667 0.00 0.00 0.00 2.69
911 963 5.709164 GCAATCCATCCATAGCTAGTTTCAT 59.291 40.000 0.00 0.00 0.00 2.57
912 964 6.128063 GCAATCCATCCATAGCTAGTTTCATC 60.128 42.308 0.00 0.00 0.00 2.92
913 965 6.692849 ATCCATCCATAGCTAGTTTCATCA 57.307 37.500 0.00 0.00 0.00 3.07
914 966 5.858381 TCCATCCATAGCTAGTTTCATCAC 58.142 41.667 0.00 0.00 0.00 3.06
915 967 4.999950 CCATCCATAGCTAGTTTCATCACC 59.000 45.833 0.00 0.00 0.00 4.02
916 968 5.221803 CCATCCATAGCTAGTTTCATCACCT 60.222 44.000 0.00 0.00 0.00 4.00
917 969 6.014242 CCATCCATAGCTAGTTTCATCACCTA 60.014 42.308 0.00 0.00 0.00 3.08
918 970 7.445121 CATCCATAGCTAGTTTCATCACCTAA 58.555 38.462 0.00 0.00 0.00 2.69
919 971 7.432148 TCCATAGCTAGTTTCATCACCTAAA 57.568 36.000 0.00 0.00 0.00 1.85
920 972 7.857456 TCCATAGCTAGTTTCATCACCTAAAA 58.143 34.615 0.00 0.00 0.00 1.52
921 973 7.987458 TCCATAGCTAGTTTCATCACCTAAAAG 59.013 37.037 0.00 0.00 0.00 2.27
922 974 7.987458 CCATAGCTAGTTTCATCACCTAAAAGA 59.013 37.037 0.00 0.00 0.00 2.52
923 975 9.383519 CATAGCTAGTTTCATCACCTAAAAGAA 57.616 33.333 0.00 0.00 0.00 2.52
924 976 9.959721 ATAGCTAGTTTCATCACCTAAAAGAAA 57.040 29.630 0.00 0.00 0.00 2.52
925 977 8.870075 AGCTAGTTTCATCACCTAAAAGAAAT 57.130 30.769 0.00 0.00 31.73 2.17
926 978 8.951243 AGCTAGTTTCATCACCTAAAAGAAATC 58.049 33.333 0.00 0.00 31.73 2.17
927 979 8.951243 GCTAGTTTCATCACCTAAAAGAAATCT 58.049 33.333 0.00 0.00 31.73 2.40
944 996 9.936759 AAAGAAATCTATAGCTAGTTAGGCATC 57.063 33.333 0.00 0.00 0.00 3.91
945 997 8.073467 AGAAATCTATAGCTAGTTAGGCATCC 57.927 38.462 0.00 0.00 0.00 3.51
946 998 7.898636 AGAAATCTATAGCTAGTTAGGCATCCT 59.101 37.037 0.00 0.00 37.71 3.24
947 999 7.654022 AATCTATAGCTAGTTAGGCATCCTC 57.346 40.000 0.00 0.00 34.61 3.71
948 1000 5.511363 TCTATAGCTAGTTAGGCATCCTCC 58.489 45.833 0.00 0.00 34.61 4.30
949 1001 2.478872 AGCTAGTTAGGCATCCTCCA 57.521 50.000 0.00 0.00 34.61 3.86
950 1002 2.324541 AGCTAGTTAGGCATCCTCCAG 58.675 52.381 0.00 0.00 34.61 3.86
951 1003 1.346068 GCTAGTTAGGCATCCTCCAGG 59.654 57.143 0.00 0.00 34.61 4.45
996 1048 3.870633 AAAGTAGTTAGCCAGTCTCCG 57.129 47.619 0.00 0.00 0.00 4.63
997 1049 1.104630 AGTAGTTAGCCAGTCTCCGC 58.895 55.000 0.00 0.00 0.00 5.54
998 1050 0.102663 GTAGTTAGCCAGTCTCCGCC 59.897 60.000 0.00 0.00 0.00 6.13
999 1051 1.381928 TAGTTAGCCAGTCTCCGCCG 61.382 60.000 0.00 0.00 0.00 6.46
1181 1233 4.271816 CCGCGACAGGGAGATCCG 62.272 72.222 8.23 0.00 41.52 4.18
1308 1360 3.745803 ACCTTCGAGACCGCCGAC 61.746 66.667 0.00 0.00 35.61 4.79
1309 1361 4.493747 CCTTCGAGACCGCCGACC 62.494 72.222 0.00 0.00 35.61 4.79
1311 1363 3.966026 CTTCGAGACCGCCGACCAC 62.966 68.421 0.00 0.00 35.61 4.16
1391 1566 3.045142 CAAGCTGCTTGGGTGTGG 58.955 61.111 29.91 6.85 37.77 4.17
1392 1567 2.914097 AAGCTGCTTGGGTGTGGC 60.914 61.111 15.16 0.00 0.00 5.01
1401 1576 4.314440 GGGTGTGGCTCGTGCTCA 62.314 66.667 9.61 6.61 39.59 4.26
1405 1580 1.079612 TGTGGCTCGTGCTCATCTG 60.080 57.895 9.61 0.00 39.59 2.90
1406 1581 2.125391 TGGCTCGTGCTCATCTGC 60.125 61.111 9.61 0.00 39.59 4.26
1429 1604 2.287009 GCTGCAGGTGACACTTACAAAC 60.287 50.000 17.12 0.00 0.00 2.93
1445 1635 3.693807 ACAAACCTGATGAGTCATGCAT 58.306 40.909 11.20 0.00 32.98 3.96
1485 1675 1.135315 CCGTACTCGTACCACCGTG 59.865 63.158 1.92 0.00 35.01 4.94
1488 1678 0.730494 GTACTCGTACCACCGTGCAC 60.730 60.000 6.82 6.82 0.00 4.57
1490 1680 3.258070 CTCGTACCACCGTGCACGA 62.258 63.158 39.10 17.45 43.02 4.35
1500 1690 0.734942 CCGTGCACGACTTCGGTAAT 60.735 55.000 39.10 0.00 44.95 1.89
1551 1741 7.924947 TCTGTTCATGAAGATGATGATAGTGAC 59.075 37.037 8.80 0.00 38.43 3.67
1552 1742 6.698766 TGTTCATGAAGATGATGATAGTGACG 59.301 38.462 8.80 0.00 38.43 4.35
1553 1743 6.639632 TCATGAAGATGATGATAGTGACGA 57.360 37.500 0.00 0.00 33.40 4.20
1555 1745 8.340618 TCATGAAGATGATGATAGTGACGATA 57.659 34.615 0.00 0.00 33.40 2.92
1556 1746 8.457261 TCATGAAGATGATGATAGTGACGATAG 58.543 37.037 0.00 0.00 33.40 2.08
1591 1805 0.909623 TGCCCCTAGAGTACCAAAGC 59.090 55.000 0.00 0.00 0.00 3.51
1618 1832 1.763968 TGATAGGGTGGACGTCTCTG 58.236 55.000 16.46 0.00 0.00 3.35
1619 1833 1.005569 TGATAGGGTGGACGTCTCTGT 59.994 52.381 16.46 6.62 0.00 3.41
1620 1834 1.677052 GATAGGGTGGACGTCTCTGTC 59.323 57.143 16.46 11.45 38.17 3.51
1638 1852 2.742954 TCAGAATGAAATGCATCGCG 57.257 45.000 0.00 0.00 45.97 5.87
1641 1855 1.331756 AGAATGAAATGCATCGCGGAC 59.668 47.619 6.13 0.00 35.78 4.79
1706 5596 0.389166 GAACTGTCGGGCTCTGTCAG 60.389 60.000 0.00 0.00 0.00 3.51
1708 5598 0.251209 ACTGTCGGGCTCTGTCAGTA 60.251 55.000 10.51 0.00 37.55 2.74
1719 5609 1.066645 TCTGTCAGTACCGAGCTACGA 60.067 52.381 0.00 0.00 45.77 3.43
1726 5616 2.290093 AGTACCGAGCTACGATTACTGC 59.710 50.000 7.07 0.00 45.77 4.40
1737 5630 2.490903 ACGATTACTGCGTTCTAGTGGT 59.509 45.455 0.00 0.00 39.18 4.16
1741 5634 5.173312 CGATTACTGCGTTCTAGTGGTATTG 59.827 44.000 0.00 0.00 0.00 1.90
1743 5636 1.933853 CTGCGTTCTAGTGGTATTGGC 59.066 52.381 0.00 0.00 0.00 4.52
1833 5726 5.480422 GGAACCCCAGAAGAACACAATTATT 59.520 40.000 0.00 0.00 0.00 1.40
1850 5743 9.715123 CACAATTATTGAGCATATTACAAACGA 57.285 29.630 12.28 0.00 0.00 3.85
1890 5783 3.223435 ACTCACGGTCATCCCTATAGTG 58.777 50.000 0.00 0.00 0.00 2.74
1920 5813 3.454812 GGGGCATAGGAAAGACAACTCTA 59.545 47.826 0.00 0.00 0.00 2.43
1968 5861 6.585416 AGAAGTGCAAGACCATTTCAAAATT 58.415 32.000 0.00 0.00 34.88 1.82
1969 5862 6.703165 AGAAGTGCAAGACCATTTCAAAATTC 59.297 34.615 0.00 0.00 34.88 2.17
1980 5873 6.041069 ACCATTTCAAAATTCGAGTTTGGGTA 59.959 34.615 18.28 5.06 36.75 3.69
1990 5883 5.258456 TCGAGTTTGGGTATGTGTATCTC 57.742 43.478 0.00 0.00 0.00 2.75
2005 5898 5.926542 TGTGTATCTCTTGACTTTAGTGTGC 59.073 40.000 0.00 0.00 0.00 4.57
2046 5939 0.839946 TGAGCTCCATCCCTAAAGCC 59.160 55.000 12.15 0.00 35.32 4.35
2052 5948 1.485066 TCCATCCCTAAAGCCGAAGAC 59.515 52.381 0.00 0.00 0.00 3.01
2053 5949 1.571919 CATCCCTAAAGCCGAAGACG 58.428 55.000 0.00 0.00 39.43 4.18
2058 5954 2.809696 CCCTAAAGCCGAAGACGAAAAA 59.190 45.455 0.00 0.00 42.66 1.94
2061 5957 3.879932 AAAGCCGAAGACGAAAAAGAG 57.120 42.857 0.00 0.00 42.66 2.85
2072 5968 6.959671 AGACGAAAAAGAGAAAGCAGATAG 57.040 37.500 0.00 0.00 0.00 2.08
2079 5975 4.734398 AGAGAAAGCAGATAGTGAGGTG 57.266 45.455 0.00 0.00 0.00 4.00
2082 5978 3.199508 AGAAAGCAGATAGTGAGGTGCAT 59.800 43.478 0.00 0.00 38.44 3.96
2180 6077 7.730364 ATGGAAATATGGTAATGAAGACGAC 57.270 36.000 0.00 0.00 0.00 4.34
2207 6104 8.421002 TGGAAAAGATTTTTAGTTCCCTTTCAG 58.579 33.333 0.00 0.00 0.00 3.02
2228 6125 1.594331 AAGAGCAAGGAAACGGTGAC 58.406 50.000 0.00 0.00 0.00 3.67
2237 6134 2.878406 AGGAAACGGTGACACAATTCTG 59.122 45.455 8.08 0.00 0.00 3.02
2247 6144 5.029807 TGACACAATTCTGGTCACAACTA 57.970 39.130 0.00 0.00 36.69 2.24
2277 6174 4.261801 TGAGGTAGCTGAAATGGTAAAGC 58.738 43.478 0.00 0.00 35.86 3.51
2280 6177 5.076873 AGGTAGCTGAAATGGTAAAGCAAA 58.923 37.500 0.00 0.00 38.14 3.68
2292 6189 6.817765 TGGTAAAGCAAAGAGATAAACCAG 57.182 37.500 0.00 0.00 30.01 4.00
2297 6194 8.947115 GTAAAGCAAAGAGATAAACCAGTACAT 58.053 33.333 0.00 0.00 0.00 2.29
2312 6209 5.546499 ACCAGTACATCTAGAAGGTTTGGAA 59.454 40.000 23.27 2.63 0.00 3.53
2329 6226 5.890424 TTGGAACCGAAAGAATATTGGAC 57.110 39.130 0.00 0.00 0.00 4.02
2353 6250 5.466393 CCCTTTTTCTAGCATGTGTTTTTGG 59.534 40.000 0.00 0.00 0.00 3.28
2357 6254 4.829064 TCTAGCATGTGTTTTTGGTGAC 57.171 40.909 0.00 0.00 0.00 3.67
2370 6267 6.127980 TGTTTTTGGTGACACTAATCAACGAA 60.128 34.615 5.11 0.00 39.32 3.85
2468 6365 3.535561 CGTGGGTAGATTGCTGAGAAAT 58.464 45.455 0.00 0.00 0.00 2.17
2471 6368 5.006746 CGTGGGTAGATTGCTGAGAAATAAC 59.993 44.000 0.00 0.00 0.00 1.89
2530 6428 4.387026 AAGAATGGGAATCACAGACCAA 57.613 40.909 0.00 0.00 36.44 3.67
2534 6432 3.354948 TGGGAATCACAGACCAATGAG 57.645 47.619 0.00 0.00 0.00 2.90
2537 6435 2.421424 GGAATCACAGACCAATGAGCAC 59.579 50.000 0.00 0.00 0.00 4.40
2549 6447 4.005650 CCAATGAGCACGATATTATGCCT 58.994 43.478 8.17 0.00 43.12 4.75
2558 6456 5.761003 CACGATATTATGCCTGCATTGAAA 58.239 37.500 10.27 0.00 37.82 2.69
2559 6457 5.854866 CACGATATTATGCCTGCATTGAAAG 59.145 40.000 10.27 1.54 37.82 2.62
2576 6474 7.926555 GCATTGAAAGTTAGCTATGACTACCTA 59.073 37.037 0.00 0.00 0.00 3.08
2639 6538 7.703058 ATTTCCGGAAGATTACAAGTTTGAT 57.297 32.000 17.97 0.00 0.00 2.57
2640 6539 8.801882 ATTTCCGGAAGATTACAAGTTTGATA 57.198 30.769 17.97 0.00 0.00 2.15
2651 6550 4.573900 ACAAGTTTGATAGTGAGGAGCTG 58.426 43.478 0.00 0.00 0.00 4.24
2660 6559 5.188555 TGATAGTGAGGAGCTGATTCACTTT 59.811 40.000 22.19 16.92 46.89 2.66
2723 6622 5.520376 AAAGAATTGAAGATATTGGGCGG 57.480 39.130 0.00 0.00 0.00 6.13
2798 6698 9.174166 GGTGATTCAGGTAAACACTATGTTATT 57.826 33.333 0.00 0.00 40.14 1.40
2810 6710 5.819379 ACACTATGTTATTCATGACCTGCTG 59.181 40.000 0.00 0.00 37.91 4.41
2843 6743 4.320788 GCATTGAAGGTTTCCTCACAAGAG 60.321 45.833 11.44 0.00 41.72 2.85
2861 6761 8.851145 TCACAAGAGTGTCTACATATATCTTCC 58.149 37.037 0.00 0.00 46.01 3.46
2875 6775 1.490574 TCTTCCTCTAGCCCAAGAGC 58.509 55.000 3.39 0.00 41.48 4.09
2897 6797 4.082571 GCTGTAGAAATTGCACCATCTGTT 60.083 41.667 4.93 0.00 0.00 3.16
2928 6828 7.071698 ACTTGTCCATTAGTATGAGTGATCCAT 59.928 37.037 0.00 0.00 33.37 3.41
2931 6831 6.014242 GTCCATTAGTATGAGTGATCCATCCA 60.014 42.308 0.00 0.00 33.37 3.41
2951 6851 5.684704 TCCAATAGTGAGGATGGAATTGTC 58.315 41.667 0.00 0.00 38.95 3.18
2960 6860 7.234166 AGTGAGGATGGAATTGTCAAAGAAAAT 59.766 33.333 0.00 0.00 0.00 1.82
3009 6911 7.971183 AGAAAGATACTGAAAACTGAGAACC 57.029 36.000 0.00 0.00 0.00 3.62
3011 6913 8.871125 AGAAAGATACTGAAAACTGAGAACCTA 58.129 33.333 0.00 0.00 0.00 3.08
3033 6935 3.044986 CGCACTTTGATGTTGTTTGGAG 58.955 45.455 0.00 0.00 0.00 3.86
3035 6937 4.557296 CGCACTTTGATGTTGTTTGGAGAT 60.557 41.667 0.00 0.00 0.00 2.75
3038 6940 6.363357 GCACTTTGATGTTGTTTGGAGATTAC 59.637 38.462 0.00 0.00 0.00 1.89
3039 6941 7.424803 CACTTTGATGTTGTTTGGAGATTACA 58.575 34.615 0.00 0.00 0.00 2.41
3056 6958 1.490621 ACAATGCAAGCTTTGTTCGC 58.509 45.000 17.36 0.00 40.03 4.70
3069 6971 4.966366 GCTTTGTTCGCATATTCAGTGATC 59.034 41.667 0.00 0.00 0.00 2.92
3089 6991 9.186837 AGTGATCTATTCAAAGATGCAAAATCT 57.813 29.630 0.00 0.00 36.33 2.40
3101 7003 3.487985 GCAAAATCTTTGCGTGTTGTC 57.512 42.857 8.24 0.00 35.58 3.18
3124 7026 7.717436 TGTCTATTTGTCAACAATGTTCTACCA 59.283 33.333 0.00 0.00 35.55 3.25
3131 7033 5.240623 GTCAACAATGTTCTACCATGTGGAA 59.759 40.000 5.96 0.00 38.94 3.53
3133 7035 6.493115 TCAACAATGTTCTACCATGTGGAATT 59.507 34.615 5.96 0.00 35.64 2.17
3152 7054 6.640499 TGGAATTTCTATTGCACAACTTTTCG 59.360 34.615 0.00 0.00 37.20 3.46
3153 7055 6.089417 GGAATTTCTATTGCACAACTTTTCGG 59.911 38.462 0.00 0.00 32.81 4.30
3155 7057 5.957842 TTCTATTGCACAACTTTTCGGAT 57.042 34.783 0.00 0.00 0.00 4.18
3192 7094 1.140252 ACCTACGGCTTGTGTCAAAGT 59.860 47.619 0.00 0.00 0.00 2.66
3193 7095 2.366266 ACCTACGGCTTGTGTCAAAGTA 59.634 45.455 0.00 0.00 0.00 2.24
3194 7096 3.007614 ACCTACGGCTTGTGTCAAAGTAT 59.992 43.478 0.00 0.00 0.00 2.12
3195 7097 4.000988 CCTACGGCTTGTGTCAAAGTATT 58.999 43.478 0.00 0.00 0.00 1.89
3196 7098 5.172934 CCTACGGCTTGTGTCAAAGTATTA 58.827 41.667 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.415553 CCATTGCCACATGAAAATTCTTATCTA 58.584 33.333 0.00 0.00 0.00 1.98
12 13 5.486735 TCCATTGCCACATGAAAATTCTT 57.513 34.783 0.00 0.00 0.00 2.52
97 98 1.817941 CCGTCCCACATAAAGGGCG 60.818 63.158 0.00 0.00 46.36 6.13
102 103 3.073356 AGGTTTCTTCCGTCCCACATAAA 59.927 43.478 0.00 0.00 0.00 1.40
326 327 0.462759 GAGAGGAACCCGCTGAATGG 60.463 60.000 0.00 0.00 32.83 3.16
417 418 2.711922 GGTGATGGCGTCTCGGTCT 61.712 63.158 8.40 0.00 0.00 3.85
561 588 0.106769 TGAGGGCACAGCTCAACAAA 60.107 50.000 0.00 0.00 0.00 2.83
584 611 8.742777 ACACGAACATAGAGTACAAATAGGTTA 58.257 33.333 0.00 0.00 0.00 2.85
634 680 1.133730 ACCACCACAACCAAACGGTAT 60.134 47.619 0.00 0.00 34.92 2.73
690 742 1.732259 GTCCAATGCAGTTGTCTACGG 59.268 52.381 0.00 0.00 36.01 4.02
691 743 2.157668 GTGTCCAATGCAGTTGTCTACG 59.842 50.000 0.00 0.00 36.01 3.51
694 746 1.143684 AGGTGTCCAATGCAGTTGTCT 59.856 47.619 0.00 0.00 36.01 3.41
699 751 1.608025 CGTGTAGGTGTCCAATGCAGT 60.608 52.381 0.00 0.00 0.00 4.40
700 752 1.078709 CGTGTAGGTGTCCAATGCAG 58.921 55.000 0.00 0.00 0.00 4.41
701 753 0.394938 ACGTGTAGGTGTCCAATGCA 59.605 50.000 0.00 0.00 0.00 3.96
702 754 0.796312 CACGTGTAGGTGTCCAATGC 59.204 55.000 7.58 0.00 33.24 3.56
703 755 1.438651 CCACGTGTAGGTGTCCAATG 58.561 55.000 15.65 0.00 36.16 2.82
704 756 0.321298 GCCACGTGTAGGTGTCCAAT 60.321 55.000 15.65 0.00 36.16 3.16
705 757 1.070105 GCCACGTGTAGGTGTCCAA 59.930 57.895 15.65 0.00 36.16 3.53
706 758 1.835267 AGCCACGTGTAGGTGTCCA 60.835 57.895 15.65 0.00 36.16 4.02
707 759 1.374252 CAGCCACGTGTAGGTGTCC 60.374 63.158 15.65 0.00 36.16 4.02
708 760 1.374252 CCAGCCACGTGTAGGTGTC 60.374 63.158 15.65 0.00 36.16 3.67
709 761 2.741092 CCAGCCACGTGTAGGTGT 59.259 61.111 15.65 0.00 36.16 4.16
710 762 2.047274 CCCAGCCACGTGTAGGTG 60.047 66.667 15.65 15.05 37.66 4.00
711 763 3.319198 CCCCAGCCACGTGTAGGT 61.319 66.667 15.65 2.41 0.00 3.08
712 764 4.778143 GCCCCAGCCACGTGTAGG 62.778 72.222 15.65 12.53 0.00 3.18
722 774 1.517361 GTTAATGCTTGGCCCCAGC 59.483 57.895 15.71 15.71 38.76 4.85
723 775 1.809207 CGTTAATGCTTGGCCCCAG 59.191 57.895 0.00 0.00 0.00 4.45
724 776 2.347322 GCGTTAATGCTTGGCCCCA 61.347 57.895 12.54 0.00 0.00 4.96
725 777 2.052104 AGCGTTAATGCTTGGCCCC 61.052 57.895 16.59 0.00 44.46 5.80
726 778 3.603365 AGCGTTAATGCTTGGCCC 58.397 55.556 16.59 0.00 44.46 5.80
733 785 0.096454 GAACCCACGAGCGTTAATGC 59.904 55.000 11.89 11.89 0.00 3.56
734 786 1.659098 GAGAACCCACGAGCGTTAATG 59.341 52.381 0.00 0.00 0.00 1.90
735 787 1.405121 GGAGAACCCACGAGCGTTAAT 60.405 52.381 0.00 0.00 34.14 1.40
736 788 0.037975 GGAGAACCCACGAGCGTTAA 60.038 55.000 0.00 0.00 34.14 2.01
737 789 0.896940 AGGAGAACCCACGAGCGTTA 60.897 55.000 0.00 0.00 37.41 3.18
738 790 2.156051 GAGGAGAACCCACGAGCGTT 62.156 60.000 0.00 0.00 37.41 4.84
739 791 2.600769 AGGAGAACCCACGAGCGT 60.601 61.111 0.00 0.00 37.41 5.07
740 792 2.182030 GAGGAGAACCCACGAGCG 59.818 66.667 0.00 0.00 37.41 5.03
741 793 1.079750 GTGAGGAGAACCCACGAGC 60.080 63.158 0.00 0.00 37.41 5.03
745 797 0.895530 TGATCGTGAGGAGAACCCAC 59.104 55.000 0.00 0.00 37.41 4.61
746 798 1.482182 CATGATCGTGAGGAGAACCCA 59.518 52.381 9.46 0.00 37.41 4.51
747 799 1.202580 CCATGATCGTGAGGAGAACCC 60.203 57.143 16.77 0.00 36.73 4.11
748 800 1.757118 TCCATGATCGTGAGGAGAACC 59.243 52.381 16.77 0.00 0.00 3.62
749 801 2.482142 GGTCCATGATCGTGAGGAGAAC 60.482 54.545 16.77 3.97 0.00 3.01
750 802 1.757118 GGTCCATGATCGTGAGGAGAA 59.243 52.381 16.77 0.00 0.00 2.87
751 803 1.063642 AGGTCCATGATCGTGAGGAGA 60.064 52.381 16.77 2.08 0.00 3.71
752 804 1.339610 GAGGTCCATGATCGTGAGGAG 59.660 57.143 16.77 0.00 0.00 3.69
753 805 1.403814 GAGGTCCATGATCGTGAGGA 58.596 55.000 16.77 3.10 0.00 3.71
754 806 0.031314 CGAGGTCCATGATCGTGAGG 59.969 60.000 16.77 0.42 0.00 3.86
755 807 0.031314 CCGAGGTCCATGATCGTGAG 59.969 60.000 16.77 6.77 34.71 3.51
756 808 2.016393 GCCGAGGTCCATGATCGTGA 62.016 60.000 16.77 0.00 34.71 4.35
757 809 1.592669 GCCGAGGTCCATGATCGTG 60.593 63.158 8.03 8.03 34.71 4.35
758 810 2.797278 GGCCGAGGTCCATGATCGT 61.797 63.158 0.00 0.00 34.71 3.73
759 811 2.029666 GGCCGAGGTCCATGATCG 59.970 66.667 0.00 0.00 36.24 3.69
760 812 2.029666 CGGCCGAGGTCCATGATC 59.970 66.667 24.07 0.00 0.00 2.92
761 813 3.550431 CCGGCCGAGGTCCATGAT 61.550 66.667 30.73 0.00 0.00 2.45
768 820 0.700564 TATATAGACCCGGCCGAGGT 59.299 55.000 30.72 30.72 41.50 3.85
769 821 1.390565 CTATATAGACCCGGCCGAGG 58.609 60.000 30.73 27.55 0.00 4.63
770 822 1.390565 CCTATATAGACCCGGCCGAG 58.609 60.000 30.73 18.52 0.00 4.63
771 823 0.033796 CCCTATATAGACCCGGCCGA 60.034 60.000 30.73 6.25 0.00 5.54
772 824 0.324091 ACCCTATATAGACCCGGCCG 60.324 60.000 21.04 21.04 0.00 6.13
773 825 2.382882 GTACCCTATATAGACCCGGCC 58.617 57.143 11.53 0.00 0.00 6.13
774 826 2.019984 CGTACCCTATATAGACCCGGC 58.980 57.143 11.53 0.00 0.00 6.13
775 827 3.356529 ACGTACCCTATATAGACCCGG 57.643 52.381 11.53 6.30 0.00 5.73
776 828 5.344743 TCTACGTACCCTATATAGACCCG 57.655 47.826 11.53 9.68 0.00 5.28
777 829 6.770303 GGATTCTACGTACCCTATATAGACCC 59.230 46.154 11.53 0.00 0.00 4.46
778 830 7.572814 AGGATTCTACGTACCCTATATAGACC 58.427 42.308 11.53 0.00 0.00 3.85
779 831 7.437862 CGAGGATTCTACGTACCCTATATAGAC 59.562 44.444 11.53 0.96 0.00 2.59
780 832 7.495901 CGAGGATTCTACGTACCCTATATAGA 58.504 42.308 11.53 0.00 0.00 1.98
781 833 6.202570 GCGAGGATTCTACGTACCCTATATAG 59.797 46.154 2.46 2.46 0.00 1.31
782 834 6.051717 GCGAGGATTCTACGTACCCTATATA 58.948 44.000 0.00 0.00 0.00 0.86
783 835 4.880696 GCGAGGATTCTACGTACCCTATAT 59.119 45.833 0.00 0.00 0.00 0.86
784 836 4.019860 AGCGAGGATTCTACGTACCCTATA 60.020 45.833 0.00 0.00 0.00 1.31
785 837 3.080319 GCGAGGATTCTACGTACCCTAT 58.920 50.000 0.00 0.00 0.00 2.57
786 838 2.105477 AGCGAGGATTCTACGTACCCTA 59.895 50.000 0.00 0.00 0.00 3.53
787 839 1.133853 AGCGAGGATTCTACGTACCCT 60.134 52.381 0.00 0.00 0.00 4.34
788 840 1.266446 GAGCGAGGATTCTACGTACCC 59.734 57.143 0.00 0.00 0.00 3.69
789 841 1.266446 GGAGCGAGGATTCTACGTACC 59.734 57.143 0.00 0.00 0.00 3.34
790 842 1.266446 GGGAGCGAGGATTCTACGTAC 59.734 57.143 0.00 0.00 0.00 3.67
791 843 1.602311 GGGAGCGAGGATTCTACGTA 58.398 55.000 0.00 0.00 0.00 3.57
792 844 1.108132 GGGGAGCGAGGATTCTACGT 61.108 60.000 0.00 0.00 0.00 3.57
793 845 0.824182 AGGGGAGCGAGGATTCTACG 60.824 60.000 0.00 0.00 0.00 3.51
794 846 0.963225 GAGGGGAGCGAGGATTCTAC 59.037 60.000 0.00 0.00 0.00 2.59
795 847 0.854218 AGAGGGGAGCGAGGATTCTA 59.146 55.000 0.00 0.00 0.00 2.10
796 848 0.469144 GAGAGGGGAGCGAGGATTCT 60.469 60.000 0.00 0.00 0.00 2.40
797 849 0.757188 TGAGAGGGGAGCGAGGATTC 60.757 60.000 0.00 0.00 0.00 2.52
798 850 1.045911 GTGAGAGGGGAGCGAGGATT 61.046 60.000 0.00 0.00 0.00 3.01
799 851 1.456705 GTGAGAGGGGAGCGAGGAT 60.457 63.158 0.00 0.00 0.00 3.24
800 852 2.043852 GTGAGAGGGGAGCGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
801 853 2.363018 TGTGAGAGGGGAGCGAGG 60.363 66.667 0.00 0.00 0.00 4.63
802 854 1.979155 TGTGTGAGAGGGGAGCGAG 60.979 63.158 0.00 0.00 0.00 5.03
803 855 2.117423 TGTGTGAGAGGGGAGCGA 59.883 61.111 0.00 0.00 0.00 4.93
804 856 2.262915 GTGTGTGAGAGGGGAGCG 59.737 66.667 0.00 0.00 0.00 5.03
805 857 1.768684 TTGGTGTGTGAGAGGGGAGC 61.769 60.000 0.00 0.00 0.00 4.70
806 858 0.764890 TTTGGTGTGTGAGAGGGGAG 59.235 55.000 0.00 0.00 0.00 4.30
807 859 0.472471 GTTTGGTGTGTGAGAGGGGA 59.528 55.000 0.00 0.00 0.00 4.81
808 860 0.182537 TGTTTGGTGTGTGAGAGGGG 59.817 55.000 0.00 0.00 0.00 4.79
809 861 1.134098 AGTGTTTGGTGTGTGAGAGGG 60.134 52.381 0.00 0.00 0.00 4.30
810 862 2.213499 GAGTGTTTGGTGTGTGAGAGG 58.787 52.381 0.00 0.00 0.00 3.69
811 863 2.213499 GGAGTGTTTGGTGTGTGAGAG 58.787 52.381 0.00 0.00 0.00 3.20
812 864 1.472552 CGGAGTGTTTGGTGTGTGAGA 60.473 52.381 0.00 0.00 0.00 3.27
813 865 0.937304 CGGAGTGTTTGGTGTGTGAG 59.063 55.000 0.00 0.00 0.00 3.51
814 866 0.537653 TCGGAGTGTTTGGTGTGTGA 59.462 50.000 0.00 0.00 0.00 3.58
815 867 0.937304 CTCGGAGTGTTTGGTGTGTG 59.063 55.000 0.00 0.00 0.00 3.82
816 868 0.828022 TCTCGGAGTGTTTGGTGTGT 59.172 50.000 4.69 0.00 0.00 3.72
817 869 1.948104 TTCTCGGAGTGTTTGGTGTG 58.052 50.000 4.69 0.00 0.00 3.82
818 870 2.702592 TTTCTCGGAGTGTTTGGTGT 57.297 45.000 4.69 0.00 0.00 4.16
819 871 3.058224 GGAATTTCTCGGAGTGTTTGGTG 60.058 47.826 4.69 0.00 0.00 4.17
820 872 3.146847 GGAATTTCTCGGAGTGTTTGGT 58.853 45.455 4.69 0.00 0.00 3.67
821 873 2.488153 GGGAATTTCTCGGAGTGTTTGG 59.512 50.000 4.69 0.00 0.00 3.28
822 874 2.488153 GGGGAATTTCTCGGAGTGTTTG 59.512 50.000 4.69 0.00 0.00 2.93
823 875 2.375509 AGGGGAATTTCTCGGAGTGTTT 59.624 45.455 4.69 0.00 0.00 2.83
824 876 1.985895 AGGGGAATTTCTCGGAGTGTT 59.014 47.619 4.69 0.00 0.00 3.32
825 877 1.657804 AGGGGAATTTCTCGGAGTGT 58.342 50.000 4.69 0.00 0.00 3.55
826 878 2.789409 AAGGGGAATTTCTCGGAGTG 57.211 50.000 4.69 0.00 0.00 3.51
827 879 2.026169 GGAAAGGGGAATTTCTCGGAGT 60.026 50.000 4.69 0.00 38.86 3.85
828 880 2.239907 AGGAAAGGGGAATTTCTCGGAG 59.760 50.000 0.00 0.00 38.86 4.63
829 881 2.275466 AGGAAAGGGGAATTTCTCGGA 58.725 47.619 0.00 0.00 38.86 4.55
830 882 2.808906 AGGAAAGGGGAATTTCTCGG 57.191 50.000 0.00 0.00 38.86 4.63
831 883 3.686016 TGAAGGAAAGGGGAATTTCTCG 58.314 45.455 0.00 0.00 38.86 4.04
832 884 3.445450 GCTGAAGGAAAGGGGAATTTCTC 59.555 47.826 0.00 0.00 38.86 2.87
833 885 3.435275 GCTGAAGGAAAGGGGAATTTCT 58.565 45.455 0.00 0.00 38.86 2.52
834 886 2.497675 GGCTGAAGGAAAGGGGAATTTC 59.502 50.000 0.00 0.00 38.26 2.17
835 887 2.112511 AGGCTGAAGGAAAGGGGAATTT 59.887 45.455 0.00 0.00 0.00 1.82
836 888 1.718801 AGGCTGAAGGAAAGGGGAATT 59.281 47.619 0.00 0.00 0.00 2.17
837 889 1.006400 CAGGCTGAAGGAAAGGGGAAT 59.994 52.381 9.42 0.00 0.00 3.01
838 890 0.405585 CAGGCTGAAGGAAAGGGGAA 59.594 55.000 9.42 0.00 0.00 3.97
839 891 2.078452 CAGGCTGAAGGAAAGGGGA 58.922 57.895 9.42 0.00 0.00 4.81
840 892 1.680314 GCAGGCTGAAGGAAAGGGG 60.680 63.158 20.86 0.00 0.00 4.79
841 893 0.679321 GAGCAGGCTGAAGGAAAGGG 60.679 60.000 20.86 0.00 0.00 3.95
842 894 0.037303 TGAGCAGGCTGAAGGAAAGG 59.963 55.000 20.86 0.00 0.00 3.11
843 895 1.163554 GTGAGCAGGCTGAAGGAAAG 58.836 55.000 20.86 0.00 0.00 2.62
844 896 0.767375 AGTGAGCAGGCTGAAGGAAA 59.233 50.000 20.86 0.00 0.00 3.13
845 897 0.322975 GAGTGAGCAGGCTGAAGGAA 59.677 55.000 20.86 0.00 0.00 3.36
846 898 0.833409 TGAGTGAGCAGGCTGAAGGA 60.833 55.000 20.86 0.00 0.00 3.36
847 899 0.252479 ATGAGTGAGCAGGCTGAAGG 59.748 55.000 20.86 0.00 0.00 3.46
848 900 1.654317 GATGAGTGAGCAGGCTGAAG 58.346 55.000 20.86 0.00 0.00 3.02
849 901 0.251354 GGATGAGTGAGCAGGCTGAA 59.749 55.000 20.86 0.00 0.00 3.02
850 902 1.903294 GGATGAGTGAGCAGGCTGA 59.097 57.895 20.86 0.00 0.00 4.26
851 903 1.521010 CGGATGAGTGAGCAGGCTG 60.521 63.158 10.94 10.94 0.00 4.85
852 904 2.898738 CGGATGAGTGAGCAGGCT 59.101 61.111 0.00 0.00 0.00 4.58
853 905 2.894387 GCGGATGAGTGAGCAGGC 60.894 66.667 0.00 0.00 0.00 4.85
854 906 2.202987 GGCGGATGAGTGAGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
855 907 1.812922 GTGGCGGATGAGTGAGCAG 60.813 63.158 0.00 0.00 0.00 4.24
856 908 2.230994 GAGTGGCGGATGAGTGAGCA 62.231 60.000 0.00 0.00 0.00 4.26
857 909 1.520342 GAGTGGCGGATGAGTGAGC 60.520 63.158 0.00 0.00 0.00 4.26
858 910 1.226802 CGAGTGGCGGATGAGTGAG 60.227 63.158 0.00 0.00 36.03 3.51
859 911 0.678684 TACGAGTGGCGGATGAGTGA 60.679 55.000 0.00 0.00 46.49 3.41
860 912 0.172578 TTACGAGTGGCGGATGAGTG 59.827 55.000 0.00 0.00 46.49 3.51
861 913 1.067212 GATTACGAGTGGCGGATGAGT 59.933 52.381 0.00 0.00 46.49 3.41
862 914 1.772182 GATTACGAGTGGCGGATGAG 58.228 55.000 0.00 0.00 46.49 2.90
863 915 0.030235 CGATTACGAGTGGCGGATGA 59.970 55.000 0.00 0.00 46.49 2.92
864 916 1.548973 GCGATTACGAGTGGCGGATG 61.549 60.000 0.00 0.00 46.49 3.51
865 917 1.299926 GCGATTACGAGTGGCGGAT 60.300 57.895 0.00 0.00 46.49 4.18
866 918 2.103538 GCGATTACGAGTGGCGGA 59.896 61.111 0.00 0.00 46.49 5.54
867 919 1.151777 ATTGCGATTACGAGTGGCGG 61.152 55.000 0.00 0.00 46.49 6.13
869 921 0.316196 GCATTGCGATTACGAGTGGC 60.316 55.000 0.00 0.00 42.66 5.01
870 922 1.006086 TGCATTGCGATTACGAGTGG 58.994 50.000 3.84 0.00 42.66 4.00
871 923 2.804421 TTGCATTGCGATTACGAGTG 57.196 45.000 3.84 0.00 42.66 3.51
872 924 2.287915 GGATTGCATTGCGATTACGAGT 59.712 45.455 12.62 0.00 42.66 4.18
873 925 2.287644 TGGATTGCATTGCGATTACGAG 59.712 45.455 12.62 0.00 42.66 4.18
874 926 2.284190 TGGATTGCATTGCGATTACGA 58.716 42.857 12.62 0.00 42.66 3.43
875 927 2.753989 TGGATTGCATTGCGATTACG 57.246 45.000 12.62 0.00 42.93 3.18
876 928 3.004629 TGGATGGATTGCATTGCGATTAC 59.995 43.478 12.62 9.55 32.11 1.89
877 929 3.220940 TGGATGGATTGCATTGCGATTA 58.779 40.909 12.62 6.11 32.11 1.75
878 930 2.033372 TGGATGGATTGCATTGCGATT 58.967 42.857 12.62 0.00 32.11 3.34
879 931 1.694844 TGGATGGATTGCATTGCGAT 58.305 45.000 11.24 11.24 35.05 4.58
880 932 1.694844 ATGGATGGATTGCATTGCGA 58.305 45.000 0.00 0.00 31.38 5.10
881 933 2.670229 GCTATGGATGGATTGCATTGCG 60.670 50.000 3.84 0.00 42.68 4.85
882 934 2.955614 GCTATGGATGGATTGCATTGC 58.044 47.619 0.46 0.46 44.48 3.56
883 935 5.008331 ACTAGCTATGGATGGATTGCATTG 58.992 41.667 0.00 0.00 37.58 2.82
884 936 5.252586 ACTAGCTATGGATGGATTGCATT 57.747 39.130 0.00 0.00 37.58 3.56
885 937 4.923516 ACTAGCTATGGATGGATTGCAT 57.076 40.909 0.00 0.00 39.96 3.96
886 938 4.712051 AACTAGCTATGGATGGATTGCA 57.288 40.909 0.00 0.00 0.00 4.08
887 939 5.065914 TGAAACTAGCTATGGATGGATTGC 58.934 41.667 0.00 0.00 0.00 3.56
888 940 6.938596 TGATGAAACTAGCTATGGATGGATTG 59.061 38.462 0.00 0.00 0.00 2.67
889 941 6.939163 GTGATGAAACTAGCTATGGATGGATT 59.061 38.462 0.00 0.00 0.00 3.01
890 942 6.471146 GTGATGAAACTAGCTATGGATGGAT 58.529 40.000 0.00 0.00 0.00 3.41
891 943 5.221722 GGTGATGAAACTAGCTATGGATGGA 60.222 44.000 0.00 0.00 0.00 3.41
892 944 4.999950 GGTGATGAAACTAGCTATGGATGG 59.000 45.833 0.00 0.00 0.00 3.51
893 945 5.862845 AGGTGATGAAACTAGCTATGGATG 58.137 41.667 0.00 0.00 0.00 3.51
894 946 7.618019 TTAGGTGATGAAACTAGCTATGGAT 57.382 36.000 0.00 0.00 0.00 3.41
895 947 7.432148 TTTAGGTGATGAAACTAGCTATGGA 57.568 36.000 0.00 0.00 0.00 3.41
896 948 7.987458 TCTTTTAGGTGATGAAACTAGCTATGG 59.013 37.037 0.00 0.00 0.00 2.74
897 949 8.948631 TCTTTTAGGTGATGAAACTAGCTATG 57.051 34.615 0.00 0.00 0.00 2.23
898 950 9.959721 TTTCTTTTAGGTGATGAAACTAGCTAT 57.040 29.630 0.00 0.00 0.00 2.97
899 951 9.959721 ATTTCTTTTAGGTGATGAAACTAGCTA 57.040 29.630 0.00 0.00 30.88 3.32
900 952 8.870075 ATTTCTTTTAGGTGATGAAACTAGCT 57.130 30.769 0.00 0.00 30.88 3.32
901 953 8.951243 AGATTTCTTTTAGGTGATGAAACTAGC 58.049 33.333 0.00 0.00 30.88 3.42
918 970 9.936759 GATGCCTAACTAGCTATAGATTTCTTT 57.063 33.333 3.21 0.00 32.93 2.52
919 971 8.536175 GGATGCCTAACTAGCTATAGATTTCTT 58.464 37.037 3.21 0.00 32.93 2.52
920 972 7.898636 AGGATGCCTAACTAGCTATAGATTTCT 59.101 37.037 3.21 0.00 29.77 2.52
921 973 8.073467 AGGATGCCTAACTAGCTATAGATTTC 57.927 38.462 3.21 0.00 29.77 2.17
922 974 7.125053 GGAGGATGCCTAACTAGCTATAGATTT 59.875 40.741 3.21 0.00 31.76 2.17
923 975 6.609616 GGAGGATGCCTAACTAGCTATAGATT 59.390 42.308 3.21 0.00 31.76 2.40
924 976 6.133356 GGAGGATGCCTAACTAGCTATAGAT 58.867 44.000 3.21 0.00 31.76 1.98
925 977 5.015284 TGGAGGATGCCTAACTAGCTATAGA 59.985 44.000 3.21 0.00 31.76 1.98
926 978 5.265191 TGGAGGATGCCTAACTAGCTATAG 58.735 45.833 0.00 0.00 31.76 1.31
927 979 5.265191 CTGGAGGATGCCTAACTAGCTATA 58.735 45.833 0.00 0.00 31.76 1.31
928 980 4.093011 CTGGAGGATGCCTAACTAGCTAT 58.907 47.826 0.00 0.00 31.76 2.97
929 981 3.501349 CTGGAGGATGCCTAACTAGCTA 58.499 50.000 0.00 0.00 31.76 3.32
930 982 2.324541 CTGGAGGATGCCTAACTAGCT 58.675 52.381 0.00 0.00 31.76 3.32
931 983 1.346068 CCTGGAGGATGCCTAACTAGC 59.654 57.143 0.00 0.00 37.39 3.42
932 984 2.896685 CTCCTGGAGGATGCCTAACTAG 59.103 54.545 16.19 0.00 44.46 2.57
933 985 2.518407 TCTCCTGGAGGATGCCTAACTA 59.482 50.000 23.00 0.00 44.46 2.24
934 986 1.292242 TCTCCTGGAGGATGCCTAACT 59.708 52.381 23.00 0.00 44.46 2.24
935 987 1.794714 TCTCCTGGAGGATGCCTAAC 58.205 55.000 23.00 0.00 44.46 2.34
936 988 2.568546 TTCTCCTGGAGGATGCCTAA 57.431 50.000 23.00 5.80 44.46 2.69
937 989 2.568546 TTTCTCCTGGAGGATGCCTA 57.431 50.000 23.00 0.00 44.46 3.93
938 990 1.563410 CTTTTCTCCTGGAGGATGCCT 59.437 52.381 23.00 0.00 44.46 4.75
939 991 1.561542 TCTTTTCTCCTGGAGGATGCC 59.438 52.381 23.00 0.00 44.46 4.40
940 992 3.356529 TTCTTTTCTCCTGGAGGATGC 57.643 47.619 23.00 0.00 44.46 3.91
974 1026 4.566987 CGGAGACTGGCTAACTACTTTTT 58.433 43.478 0.00 0.00 0.00 1.94
975 1027 3.616802 GCGGAGACTGGCTAACTACTTTT 60.617 47.826 0.00 0.00 0.00 2.27
976 1028 2.094130 GCGGAGACTGGCTAACTACTTT 60.094 50.000 0.00 0.00 0.00 2.66
977 1029 1.477295 GCGGAGACTGGCTAACTACTT 59.523 52.381 0.00 0.00 0.00 2.24
978 1030 1.104630 GCGGAGACTGGCTAACTACT 58.895 55.000 0.00 0.00 0.00 2.57
979 1031 0.102663 GGCGGAGACTGGCTAACTAC 59.897 60.000 0.00 0.00 0.00 2.73
980 1032 1.381928 CGGCGGAGACTGGCTAACTA 61.382 60.000 0.00 0.00 0.00 2.24
981 1033 2.711922 CGGCGGAGACTGGCTAACT 61.712 63.158 0.00 0.00 0.00 2.24
982 1034 2.017559 ATCGGCGGAGACTGGCTAAC 62.018 60.000 7.21 0.00 0.00 2.34
983 1035 1.756950 ATCGGCGGAGACTGGCTAA 60.757 57.895 7.21 0.00 0.00 3.09
984 1036 2.123854 ATCGGCGGAGACTGGCTA 60.124 61.111 7.21 0.00 0.00 3.93
985 1037 3.842923 CATCGGCGGAGACTGGCT 61.843 66.667 7.21 0.00 0.00 4.75
986 1038 4.899239 CCATCGGCGGAGACTGGC 62.899 72.222 7.21 0.00 0.00 4.85
987 1039 3.147595 TCCATCGGCGGAGACTGG 61.148 66.667 7.21 7.02 0.00 4.00
997 1049 4.530857 GGTGGCGGACTCCATCGG 62.531 72.222 0.00 0.00 38.57 4.18
998 1050 3.770040 TGGTGGCGGACTCCATCG 61.770 66.667 0.00 0.00 40.12 3.84
1111 1163 2.876645 CGTCTTGAGCGCCTCGAC 60.877 66.667 2.29 5.17 32.35 4.20
1169 1221 3.474570 GGCTGCGGATCTCCCTGT 61.475 66.667 0.00 0.00 0.00 4.00
1353 1405 2.102946 GCAGCTTTGGCCGTATGC 59.897 61.111 0.00 2.66 39.73 3.14
1391 1566 2.811066 GCAGCAGATGAGCACGAGC 61.811 63.158 0.00 0.00 42.56 5.03
1392 1567 1.153608 AGCAGCAGATGAGCACGAG 60.154 57.895 0.00 0.00 36.85 4.18
1405 1580 0.603707 TAAGTGTCACCTGCAGCAGC 60.604 55.000 17.81 3.76 42.57 5.25
1406 1581 1.151668 GTAAGTGTCACCTGCAGCAG 58.848 55.000 16.23 16.23 0.00 4.24
1416 1591 5.163353 TGACTCATCAGGTTTGTAAGTGTCA 60.163 40.000 0.00 0.00 0.00 3.58
1418 1593 5.290493 TGACTCATCAGGTTTGTAAGTGT 57.710 39.130 0.00 0.00 0.00 3.55
1429 1604 1.333931 GCACATGCATGACTCATCAGG 59.666 52.381 32.75 10.70 38.57 3.86
1464 1654 1.305219 CGGTGGTACGAGTACGGGAA 61.305 60.000 7.24 0.00 44.46 3.97
1485 1675 3.317608 TCGATTACCGAAGTCGTGC 57.682 52.632 0.00 0.00 45.43 5.34
1500 1690 2.088423 GAAGAAGAGCAGAGGAGTCGA 58.912 52.381 0.00 0.00 0.00 4.20
1551 1741 4.201695 GCATGCTTGCTATCATCACTATCG 60.202 45.833 16.80 0.00 45.77 2.92
1552 1742 5.219226 GCATGCTTGCTATCATCACTATC 57.781 43.478 16.80 0.00 45.77 2.08
1566 1774 1.202698 GGTACTCTAGGGGCATGCTTG 60.203 57.143 18.92 0.00 0.00 4.01
1591 1805 4.261801 ACGTCCACCCTATCAAATTTCAG 58.738 43.478 0.00 0.00 0.00 3.02
1618 1832 2.369600 CGCGATGCATTTCATTCTGAC 58.630 47.619 0.00 0.00 35.05 3.51
1619 1833 1.331447 CCGCGATGCATTTCATTCTGA 59.669 47.619 8.23 0.00 35.05 3.27
1620 1834 1.331447 TCCGCGATGCATTTCATTCTG 59.669 47.619 8.23 0.00 35.05 3.02
1638 1852 0.323957 ACAGGGGCTTTAGTTCGTCC 59.676 55.000 0.00 0.00 0.00 4.79
1641 1855 1.156736 CACACAGGGGCTTTAGTTCG 58.843 55.000 0.00 0.00 0.00 3.95
1690 1904 0.171455 GTACTGACAGAGCCCGACAG 59.829 60.000 10.08 0.00 35.14 3.51
1706 5596 2.648426 GCAGTAATCGTAGCTCGGTAC 58.352 52.381 0.00 1.38 40.32 3.34
1708 5598 0.029035 CGCAGTAATCGTAGCTCGGT 59.971 55.000 0.00 0.00 40.32 4.69
1719 5609 5.357257 CCAATACCACTAGAACGCAGTAAT 58.643 41.667 0.00 0.00 45.00 1.89
1726 5616 3.938963 ACATTGCCAATACCACTAGAACG 59.061 43.478 0.00 0.00 0.00 3.95
1743 5636 4.184629 GTCTACCTGTAGAGGCAACATTG 58.815 47.826 5.68 0.00 44.33 2.82
1759 5652 2.169978 GTGAGGTGGTTATGGGTCTACC 59.830 54.545 0.00 0.00 40.81 3.18
1797 5690 3.896854 GGGTTCCCTCCCATACAAC 57.103 57.895 0.00 0.00 46.30 3.32
1833 5726 8.655651 TGTATTCATCGTTTGTAATATGCTCA 57.344 30.769 0.00 0.00 0.00 4.26
1865 5758 2.951229 AGGGATGACCGTGAGTTTTT 57.049 45.000 0.00 0.00 46.96 1.94
1867 5760 4.099573 CACTATAGGGATGACCGTGAGTTT 59.900 45.833 4.43 0.00 46.96 2.66
1869 5762 3.223435 CACTATAGGGATGACCGTGAGT 58.777 50.000 4.43 0.00 46.96 3.41
1890 5783 3.178611 CCTATGCCCCCAGGACCC 61.179 72.222 0.00 0.00 33.42 4.46
1935 5828 4.702612 TGGTCTTGCACTTCTTTGTTGTTA 59.297 37.500 0.00 0.00 0.00 2.41
1940 5833 4.402155 TGAAATGGTCTTGCACTTCTTTGT 59.598 37.500 0.00 0.00 0.00 2.83
1956 5849 5.296748 ACCCAAACTCGAATTTTGAAATGG 58.703 37.500 16.97 12.66 36.24 3.16
1968 5861 4.954202 AGAGATACACATACCCAAACTCGA 59.046 41.667 0.00 0.00 0.00 4.04
1969 5862 5.263968 AGAGATACACATACCCAAACTCG 57.736 43.478 0.00 0.00 0.00 4.18
1980 5873 6.591834 GCACACTAAAGTCAAGAGATACACAT 59.408 38.462 0.00 0.00 0.00 3.21
1990 5883 7.072030 GTCAACTTATGCACACTAAAGTCAAG 58.928 38.462 0.00 0.00 31.15 3.02
2046 5939 4.209288 TCTGCTTTCTCTTTTTCGTCTTCG 59.791 41.667 0.00 0.00 38.55 3.79
2052 5948 6.183360 CCTCACTATCTGCTTTCTCTTTTTCG 60.183 42.308 0.00 0.00 0.00 3.46
2053 5949 6.652900 ACCTCACTATCTGCTTTCTCTTTTTC 59.347 38.462 0.00 0.00 0.00 2.29
2058 5954 3.118811 GCACCTCACTATCTGCTTTCTCT 60.119 47.826 0.00 0.00 0.00 3.10
2061 5957 2.977914 TGCACCTCACTATCTGCTTTC 58.022 47.619 0.00 0.00 0.00 2.62
2072 5968 2.084546 GGTCCAAGTTATGCACCTCAC 58.915 52.381 0.00 0.00 0.00 3.51
2079 5975 4.072131 TCTGAAGTTGGTCCAAGTTATGC 58.928 43.478 22.19 12.18 37.16 3.14
2082 5978 8.754991 TTAATTTCTGAAGTTGGTCCAAGTTA 57.245 30.769 22.19 8.98 37.16 2.24
2180 6077 8.421002 TGAAAGGGAACTAAAAATCTTTTCCAG 58.579 33.333 0.00 0.00 42.68 3.86
2207 6104 2.031944 GTCACCGTTTCCTTGCTCTTTC 60.032 50.000 0.00 0.00 0.00 2.62
2228 6125 6.128172 GGAATCTAGTTGTGACCAGAATTGTG 60.128 42.308 0.00 0.00 27.42 3.33
2237 6134 4.020128 ACCTCAAGGAATCTAGTTGTGACC 60.020 45.833 2.30 0.00 38.94 4.02
2247 6144 5.435291 CATTTCAGCTACCTCAAGGAATCT 58.565 41.667 2.30 0.00 38.94 2.40
2280 6177 8.062536 ACCTTCTAGATGTACTGGTTTATCTCT 58.937 37.037 0.00 0.00 32.54 3.10
2312 6209 4.586306 AAGGGTCCAATATTCTTTCGGT 57.414 40.909 0.00 0.00 0.00 4.69
2329 6226 5.466393 CCAAAAACACATGCTAGAAAAAGGG 59.534 40.000 0.00 0.00 0.00 3.95
2353 6250 9.425893 CATCATTATTTCGTTGATTAGTGTCAC 57.574 33.333 0.00 0.00 0.00 3.67
2357 6254 9.986833 TTGTCATCATTATTTCGTTGATTAGTG 57.013 29.630 0.00 0.00 0.00 2.74
2468 6365 8.533569 TTGTCCAGTGATCTACAGATATGTTA 57.466 34.615 0.00 0.00 34.37 2.41
2471 6368 7.014134 ACTCTTGTCCAGTGATCTACAGATATG 59.986 40.741 0.00 0.00 34.37 1.78
2530 6428 3.005554 GCAGGCATAATATCGTGCTCAT 58.994 45.455 10.87 0.00 41.04 2.90
2534 6432 3.189080 TCAATGCAGGCATAATATCGTGC 59.811 43.478 7.26 4.20 42.43 5.34
2537 6435 6.005583 ACTTTCAATGCAGGCATAATATCG 57.994 37.500 7.26 0.00 35.31 2.92
2549 6447 6.538742 GGTAGTCATAGCTAACTTTCAATGCA 59.461 38.462 3.47 0.00 0.00 3.96
2559 6457 7.705752 GTGAAAAGGTAGGTAGTCATAGCTAAC 59.294 40.741 0.00 2.13 45.92 2.34
2576 6474 3.457610 CATTGTTGCAGGTGAAAAGGT 57.542 42.857 0.00 0.00 0.00 3.50
2604 6503 3.631686 TCTTCCGGAAATAATGCACATGG 59.368 43.478 19.39 1.46 0.00 3.66
2606 6505 6.545666 TGTAATCTTCCGGAAATAATGCACAT 59.454 34.615 19.39 0.13 0.00 3.21
2651 6550 6.655003 TGTCAAGTCCTATCCAAAAGTGAATC 59.345 38.462 0.00 0.00 0.00 2.52
2660 6559 8.375506 GGATGTATAATGTCAAGTCCTATCCAA 58.624 37.037 0.00 0.00 31.78 3.53
2717 6616 0.958091 CATTCAAGTTGTTCCGCCCA 59.042 50.000 2.11 0.00 0.00 5.36
2764 6664 5.308497 TGTTTACCTGAATCACCTGTTCCTA 59.692 40.000 0.00 0.00 0.00 2.94
2767 6667 5.063880 AGTGTTTACCTGAATCACCTGTTC 58.936 41.667 0.00 0.00 38.15 3.18
2810 6710 5.521372 GGAAACCTTCAATGCTAAATCATGC 59.479 40.000 0.00 0.00 0.00 4.06
2843 6743 7.067737 GGGCTAGAGGAAGATATATGTAGACAC 59.932 44.444 0.00 0.00 0.00 3.67
2861 6761 2.660572 TCTACAGCTCTTGGGCTAGAG 58.339 52.381 11.28 11.28 43.66 2.43
2875 6775 5.633830 AACAGATGGTGCAATTTCTACAG 57.366 39.130 0.00 0.00 0.00 2.74
2897 6797 7.179516 TCACTCATACTAATGGACAAGTGGTAA 59.820 37.037 0.00 0.00 36.01 2.85
2928 6828 5.191522 TGACAATTCCATCCTCACTATTGGA 59.808 40.000 0.00 0.00 36.49 3.53
2931 6831 7.405292 TCTTTGACAATTCCATCCTCACTATT 58.595 34.615 0.00 0.00 0.00 1.73
2983 6883 8.286097 GGTTCTCAGTTTTCAGTATCTTTCTTG 58.714 37.037 0.00 0.00 0.00 3.02
2987 6887 7.599245 CGTAGGTTCTCAGTTTTCAGTATCTTT 59.401 37.037 0.00 0.00 0.00 2.52
2990 6890 5.288952 GCGTAGGTTCTCAGTTTTCAGTATC 59.711 44.000 0.00 0.00 0.00 2.24
2999 6901 3.131396 CAAAGTGCGTAGGTTCTCAGTT 58.869 45.455 0.00 0.00 0.00 3.16
3000 6902 2.364324 TCAAAGTGCGTAGGTTCTCAGT 59.636 45.455 0.00 0.00 0.00 3.41
3001 6903 3.026630 TCAAAGTGCGTAGGTTCTCAG 57.973 47.619 0.00 0.00 0.00 3.35
3009 6911 3.974401 CCAAACAACATCAAAGTGCGTAG 59.026 43.478 0.00 0.00 0.00 3.51
3011 6913 2.425312 TCCAAACAACATCAAAGTGCGT 59.575 40.909 0.00 0.00 0.00 5.24
3033 6935 4.201523 GCGAACAAAGCTTGCATTGTAATC 60.202 41.667 15.01 9.91 38.75 1.75
3035 6937 3.049206 GCGAACAAAGCTTGCATTGTAA 58.951 40.909 15.01 0.00 38.75 2.41
3038 6940 1.489574 TGCGAACAAAGCTTGCATTG 58.510 45.000 0.00 8.71 35.28 2.82
3039 6941 2.443887 ATGCGAACAAAGCTTGCATT 57.556 40.000 13.75 3.03 43.24 3.56
3089 6991 4.884458 TGACAAATAGACAACACGCAAA 57.116 36.364 0.00 0.00 0.00 3.68
3101 7003 8.514594 ACATGGTAGAACATTGTTGACAAATAG 58.485 33.333 6.80 0.00 39.55 1.73
3118 7020 6.318648 GTGCAATAGAAATTCCACATGGTAGA 59.681 38.462 0.00 0.00 34.44 2.59
3124 7026 6.594788 AGTTGTGCAATAGAAATTCCACAT 57.405 33.333 3.57 0.00 42.07 3.21
3131 7033 6.325919 TCCGAAAAGTTGTGCAATAGAAAT 57.674 33.333 0.00 0.00 0.00 2.17
3133 7035 5.705441 AGATCCGAAAAGTTGTGCAATAGAA 59.295 36.000 0.00 0.00 0.00 2.10
3153 7055 2.288518 GGTAGCGGAGATGGACAAGATC 60.289 54.545 0.00 0.00 0.00 2.75
3155 7057 1.112113 GGTAGCGGAGATGGACAAGA 58.888 55.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.