Multiple sequence alignment - TraesCS1D01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G098100 chr1D 100.000 2927 0 0 1 2927 84874439 84877365 0.000000e+00 5406.0
1 TraesCS1D01G098100 chr1D 94.630 1136 45 10 985 2112 84777745 84776618 0.000000e+00 1746.0
2 TraesCS1D01G098100 chr1D 99.647 283 1 0 2643 2925 84889157 84889439 4.320000e-143 518.0
3 TraesCS1D01G098100 chr1D 98.947 285 3 0 2643 2927 84853664 84853380 7.240000e-141 510.0
4 TraesCS1D01G098100 chr1D 98.947 285 3 0 2643 2927 476377134 476376850 7.240000e-141 510.0
5 TraesCS1D01G098100 chr1D 98.947 285 3 0 2643 2927 476389447 476389163 7.240000e-141 510.0
6 TraesCS1D01G098100 chr1B 90.033 1826 108 30 244 2013 137554740 137556547 0.000000e+00 2296.0
7 TraesCS1D01G098100 chr1B 94.657 1123 43 12 995 2109 137454083 137452970 0.000000e+00 1725.0
8 TraesCS1D01G098100 chr1B 93.233 133 9 0 2508 2640 137611531 137611663 2.300000e-46 196.0
9 TraesCS1D01G098100 chr1B 95.312 64 2 1 1891 1954 137615020 137615082 1.860000e-17 100.0
10 TraesCS1D01G098100 chr1B 88.710 62 3 1 2455 2516 137570680 137570737 4.050000e-09 73.1
11 TraesCS1D01G098100 chr1A 94.996 1419 46 15 708 2112 79106876 79108283 0.000000e+00 2204.0
12 TraesCS1D01G098100 chr1A 95.491 1131 37 8 985 2109 78964425 78963303 0.000000e+00 1794.0
13 TraesCS1D01G098100 chr1A 92.435 423 27 2 2220 2642 79108303 79108720 1.500000e-167 599.0
14 TraesCS1D01G098100 chr1A 87.158 366 27 10 268 614 79105423 79105787 5.880000e-107 398.0
15 TraesCS1D01G098100 chr1A 95.062 162 5 2 1 159 79095113 79095274 4.840000e-63 252.0
16 TraesCS1D01G098100 chr1A 95.312 64 2 1 1891 1954 79117024 79117086 1.860000e-17 100.0
17 TraesCS1D01G098100 chr1A 86.813 91 10 2 2101 2190 533151943 533151854 1.860000e-17 100.0
18 TraesCS1D01G098100 chr1A 88.750 80 7 2 2112 2190 459323310 459323388 2.400000e-16 97.1
19 TraesCS1D01G098100 chr1A 96.491 57 2 0 650 706 79106793 79106849 8.640000e-16 95.3
20 TraesCS1D01G098100 chr4D 98.947 285 3 0 2643 2927 474406182 474406466 7.240000e-141 510.0
21 TraesCS1D01G098100 chr4D 98.606 287 4 0 2641 2927 474393779 474394065 2.600000e-140 508.0
22 TraesCS1D01G098100 chr4D 98.264 288 5 0 2640 2927 368838468 368838755 3.370000e-139 505.0
23 TraesCS1D01G098100 chr6D 97.333 300 6 2 2630 2927 136003091 136003390 2.600000e-140 508.0
24 TraesCS1D01G098100 chr6D 82.508 303 48 5 1475 1774 414256658 414256358 8.050000e-66 261.0
25 TraesCS1D01G098100 chr6D 82.119 302 51 3 1475 1774 414113903 414113603 3.740000e-64 255.0
26 TraesCS1D01G098100 chr7D 95.513 312 9 4 2621 2927 270791157 270791468 7.290000e-136 494.0
27 TraesCS1D01G098100 chr7D 91.139 79 6 1 2112 2190 572040970 572041047 3.990000e-19 106.0
28 TraesCS1D01G098100 chr7D 83.333 90 11 4 2112 2198 411332742 411332830 2.420000e-11 80.5
29 TraesCS1D01G098100 chr7D 100.000 28 0 0 1090 1117 552325266 552325293 5.000000e-03 52.8
30 TraesCS1D01G098100 chr5B 79.018 448 76 16 1474 1909 410722992 410723433 1.030000e-74 291.0
31 TraesCS1D01G098100 chr5B 89.655 87 9 0 2112 2198 609093486 609093400 8.570000e-21 111.0
32 TraesCS1D01G098100 chr5A 77.925 453 78 18 1474 1909 450541450 450541897 2.240000e-66 263.0
33 TraesCS1D01G098100 chr4A 91.358 81 7 0 2110 2190 136760641 136760561 8.570000e-21 111.0
34 TraesCS1D01G098100 chr6B 91.892 74 6 0 2118 2191 182143216 182143143 1.430000e-18 104.0
35 TraesCS1D01G098100 chr6B 87.356 87 11 0 2112 2198 212632535 212632621 1.860000e-17 100.0
36 TraesCS1D01G098100 chr3A 84.722 72 9 2 2136 2205 512320385 512320314 1.460000e-08 71.3
37 TraesCS1D01G098100 chr7B 100.000 28 0 0 1090 1117 597453606 597453633 5.000000e-03 52.8
38 TraesCS1D01G098100 chr7A 100.000 28 0 0 1090 1117 637994598 637994625 5.000000e-03 52.8
39 TraesCS1D01G098100 chr7A 100.000 28 0 0 1090 1117 638132398 638132425 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G098100 chr1D 84874439 84877365 2926 False 5406.000 5406 100.000 1 2927 1 chr1D.!!$F1 2926
1 TraesCS1D01G098100 chr1D 84776618 84777745 1127 True 1746.000 1746 94.630 985 2112 1 chr1D.!!$R1 1127
2 TraesCS1D01G098100 chr1B 137554740 137556547 1807 False 2296.000 2296 90.033 244 2013 1 chr1B.!!$F1 1769
3 TraesCS1D01G098100 chr1B 137452970 137454083 1113 True 1725.000 1725 94.657 995 2109 1 chr1B.!!$R1 1114
4 TraesCS1D01G098100 chr1A 78963303 78964425 1122 True 1794.000 1794 95.491 985 2109 1 chr1A.!!$R1 1124
5 TraesCS1D01G098100 chr1A 79105423 79108720 3297 False 824.075 2204 92.770 268 2642 4 chr1A.!!$F4 2374

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.031857 CAGGAGCAGATACTCTGGCG 59.968 60.0 6.3 0.0 44.43 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 3107 2.559698 TGACACCGAACCAATCACAT 57.44 45.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.850441 GCGTACGAGGAAAAACAGTC 57.150 50.000 21.65 0.00 0.00 3.51
20 21 1.123756 GCGTACGAGGAAAAACAGTCG 59.876 52.381 21.65 0.00 38.40 4.18
21 22 1.717645 CGTACGAGGAAAAACAGTCGG 59.282 52.381 10.44 0.00 36.74 4.79
22 23 1.458445 GTACGAGGAAAAACAGTCGGC 59.542 52.381 0.00 0.00 36.74 5.54
23 24 0.179067 ACGAGGAAAAACAGTCGGCA 60.179 50.000 0.00 0.00 36.74 5.69
24 25 1.156736 CGAGGAAAAACAGTCGGCAT 58.843 50.000 0.00 0.00 0.00 4.40
25 26 1.535462 CGAGGAAAAACAGTCGGCATT 59.465 47.619 0.00 0.00 0.00 3.56
26 27 2.665519 CGAGGAAAAACAGTCGGCATTG 60.666 50.000 0.00 0.00 0.00 2.82
27 28 2.552315 GAGGAAAAACAGTCGGCATTGA 59.448 45.455 0.00 0.00 0.00 2.57
28 29 3.157087 AGGAAAAACAGTCGGCATTGAT 58.843 40.909 0.00 0.00 0.00 2.57
29 30 3.573967 AGGAAAAACAGTCGGCATTGATT 59.426 39.130 0.00 0.00 0.00 2.57
30 31 4.039124 AGGAAAAACAGTCGGCATTGATTT 59.961 37.500 0.00 0.00 0.00 2.17
31 32 4.150451 GGAAAAACAGTCGGCATTGATTTG 59.850 41.667 0.00 0.00 0.00 2.32
32 33 4.320608 AAAACAGTCGGCATTGATTTGT 57.679 36.364 0.00 0.00 0.00 2.83
33 34 2.995466 ACAGTCGGCATTGATTTGTG 57.005 45.000 0.00 0.00 0.00 3.33
34 35 1.541147 ACAGTCGGCATTGATTTGTGG 59.459 47.619 0.00 0.00 0.00 4.17
35 36 1.811965 CAGTCGGCATTGATTTGTGGA 59.188 47.619 0.00 0.00 0.00 4.02
36 37 2.228582 CAGTCGGCATTGATTTGTGGAA 59.771 45.455 0.00 0.00 0.00 3.53
37 38 2.228822 AGTCGGCATTGATTTGTGGAAC 59.771 45.455 0.00 0.00 37.35 3.62
48 49 2.843545 GTGGAACAAGAGCCCCCA 59.156 61.111 0.00 0.00 44.16 4.96
49 50 1.384191 GTGGAACAAGAGCCCCCAT 59.616 57.895 0.00 0.00 44.16 4.00
50 51 0.967380 GTGGAACAAGAGCCCCCATG 60.967 60.000 0.00 0.00 44.16 3.66
51 52 1.380380 GGAACAAGAGCCCCCATGG 60.380 63.158 4.14 4.14 37.09 3.66
60 61 4.916358 CCCCCATGGCTCTGAATC 57.084 61.111 6.09 0.00 0.00 2.52
61 62 1.925120 CCCCCATGGCTCTGAATCA 59.075 57.895 6.09 0.00 0.00 2.57
62 63 0.481567 CCCCCATGGCTCTGAATCAT 59.518 55.000 6.09 0.00 0.00 2.45
63 64 1.706866 CCCCCATGGCTCTGAATCATA 59.293 52.381 6.09 0.00 0.00 2.15
64 65 2.553904 CCCCCATGGCTCTGAATCATAC 60.554 54.545 6.09 0.00 0.00 2.39
65 66 2.420642 CCCATGGCTCTGAATCATACG 58.579 52.381 6.09 0.00 0.00 3.06
66 67 2.420642 CCATGGCTCTGAATCATACGG 58.579 52.381 0.00 0.00 0.00 4.02
67 68 2.037641 CCATGGCTCTGAATCATACGGA 59.962 50.000 0.00 0.00 0.00 4.69
68 69 3.307269 CCATGGCTCTGAATCATACGGAT 60.307 47.826 0.00 0.00 38.05 4.18
69 70 3.667497 TGGCTCTGAATCATACGGATC 57.333 47.619 0.00 0.00 34.28 3.36
70 71 2.029918 TGGCTCTGAATCATACGGATCG 60.030 50.000 0.00 0.00 34.28 3.69
71 72 1.989165 GCTCTGAATCATACGGATCGC 59.011 52.381 0.00 0.00 34.28 4.58
72 73 2.608016 GCTCTGAATCATACGGATCGCA 60.608 50.000 0.00 0.00 34.28 5.10
73 74 3.842820 CTCTGAATCATACGGATCGCAT 58.157 45.455 0.00 0.00 34.28 4.73
74 75 3.578688 TCTGAATCATACGGATCGCATG 58.421 45.455 0.00 0.00 34.28 4.06
75 76 2.669924 CTGAATCATACGGATCGCATGG 59.330 50.000 0.00 0.00 34.28 3.66
76 77 2.037121 TGAATCATACGGATCGCATGGT 59.963 45.455 0.00 0.00 34.28 3.55
77 78 2.370281 ATCATACGGATCGCATGGTC 57.630 50.000 0.00 0.00 32.24 4.02
78 79 1.328279 TCATACGGATCGCATGGTCT 58.672 50.000 0.00 0.00 32.24 3.85
79 80 1.686587 TCATACGGATCGCATGGTCTT 59.313 47.619 0.00 0.00 32.24 3.01
80 81 2.061773 CATACGGATCGCATGGTCTTC 58.938 52.381 0.00 0.00 28.24 2.87
81 82 1.107945 TACGGATCGCATGGTCTTCA 58.892 50.000 0.00 0.00 0.00 3.02
82 83 0.179100 ACGGATCGCATGGTCTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
83 84 0.103026 CGGATCGCATGGTCTTCAGA 59.897 55.000 0.00 0.00 0.00 3.27
84 85 1.471501 CGGATCGCATGGTCTTCAGAA 60.472 52.381 0.00 0.00 0.00 3.02
85 86 2.208431 GGATCGCATGGTCTTCAGAAG 58.792 52.381 3.45 3.45 0.00 2.85
86 87 2.208431 GATCGCATGGTCTTCAGAAGG 58.792 52.381 10.42 0.00 0.00 3.46
87 88 1.266178 TCGCATGGTCTTCAGAAGGA 58.734 50.000 10.42 0.00 0.00 3.36
88 89 1.833630 TCGCATGGTCTTCAGAAGGAT 59.166 47.619 10.42 0.00 0.00 3.24
89 90 2.237143 TCGCATGGTCTTCAGAAGGATT 59.763 45.455 10.42 0.00 0.00 3.01
103 104 4.953940 GAAGGATTCAGGAGCAGATACT 57.046 45.455 0.00 0.00 46.62 2.12
104 105 4.881920 GAAGGATTCAGGAGCAGATACTC 58.118 47.826 0.00 0.00 46.62 2.59
105 106 4.197559 AGGATTCAGGAGCAGATACTCT 57.802 45.455 0.00 0.00 36.87 3.24
106 107 3.896888 AGGATTCAGGAGCAGATACTCTG 59.103 47.826 0.00 0.00 46.90 3.35
107 108 3.006752 GGATTCAGGAGCAGATACTCTGG 59.993 52.174 6.30 0.00 44.43 3.86
108 109 1.407936 TCAGGAGCAGATACTCTGGC 58.592 55.000 6.30 0.00 44.43 4.85
109 110 0.031857 CAGGAGCAGATACTCTGGCG 59.968 60.000 6.30 0.00 44.43 5.69
110 111 0.106469 AGGAGCAGATACTCTGGCGA 60.106 55.000 6.30 0.00 44.43 5.54
111 112 0.965439 GGAGCAGATACTCTGGCGAT 59.035 55.000 6.30 0.00 44.43 4.58
112 113 1.336702 GGAGCAGATACTCTGGCGATG 60.337 57.143 6.30 0.00 44.43 3.84
113 114 1.339610 GAGCAGATACTCTGGCGATGT 59.660 52.381 6.30 0.00 44.43 3.06
114 115 1.068281 AGCAGATACTCTGGCGATGTG 59.932 52.381 6.30 0.00 44.43 3.21
115 116 1.202463 GCAGATACTCTGGCGATGTGT 60.202 52.381 6.30 0.00 44.43 3.72
116 117 2.034685 GCAGATACTCTGGCGATGTGTA 59.965 50.000 6.30 0.00 44.43 2.90
117 118 3.305676 GCAGATACTCTGGCGATGTGTAT 60.306 47.826 6.30 0.00 44.43 2.29
118 119 4.480541 CAGATACTCTGGCGATGTGTATC 58.519 47.826 13.93 13.93 40.71 2.24
119 120 3.508012 AGATACTCTGGCGATGTGTATCC 59.492 47.826 16.21 0.00 39.62 2.59
120 121 1.485124 ACTCTGGCGATGTGTATCCA 58.515 50.000 0.00 0.00 0.00 3.41
121 122 2.042464 ACTCTGGCGATGTGTATCCAT 58.958 47.619 0.00 0.00 0.00 3.41
122 123 2.036475 ACTCTGGCGATGTGTATCCATC 59.964 50.000 0.00 0.00 38.28 3.51
123 124 2.036346 CTCTGGCGATGTGTATCCATCA 59.964 50.000 0.00 0.00 41.06 3.07
124 125 2.634453 TCTGGCGATGTGTATCCATCAT 59.366 45.455 0.00 0.00 41.06 2.45
125 126 2.740447 CTGGCGATGTGTATCCATCATG 59.260 50.000 0.00 0.00 41.06 3.07
126 127 2.368221 TGGCGATGTGTATCCATCATGA 59.632 45.455 0.00 0.00 41.06 3.07
127 128 3.008266 TGGCGATGTGTATCCATCATGAT 59.992 43.478 1.18 1.18 41.06 2.45
128 129 3.620374 GGCGATGTGTATCCATCATGATC 59.380 47.826 4.86 0.00 41.06 2.92
129 130 4.248058 GCGATGTGTATCCATCATGATCA 58.752 43.478 4.86 0.00 41.06 2.92
130 131 4.329256 GCGATGTGTATCCATCATGATCAG 59.671 45.833 4.86 0.19 41.06 2.90
131 132 4.329256 CGATGTGTATCCATCATGATCAGC 59.671 45.833 4.86 0.88 41.06 4.26
132 133 4.693042 TGTGTATCCATCATGATCAGCA 57.307 40.909 4.86 0.00 0.00 4.41
133 134 5.237236 TGTGTATCCATCATGATCAGCAT 57.763 39.130 4.86 0.00 37.85 3.79
134 135 5.243207 TGTGTATCCATCATGATCAGCATC 58.757 41.667 4.86 0.00 34.15 3.91
135 136 5.012768 TGTGTATCCATCATGATCAGCATCT 59.987 40.000 4.86 0.00 34.15 2.90
136 137 5.938710 GTGTATCCATCATGATCAGCATCTT 59.061 40.000 4.86 0.00 34.15 2.40
137 138 5.938125 TGTATCCATCATGATCAGCATCTTG 59.062 40.000 4.86 0.00 34.15 3.02
138 139 4.699925 TCCATCATGATCAGCATCTTGA 57.300 40.909 4.86 0.00 43.67 3.02
139 140 4.642429 TCCATCATGATCAGCATCTTGAG 58.358 43.478 4.86 0.00 43.11 3.02
140 141 4.102681 TCCATCATGATCAGCATCTTGAGT 59.897 41.667 4.86 0.00 43.11 3.41
141 142 4.822350 CCATCATGATCAGCATCTTGAGTT 59.178 41.667 4.86 0.00 43.11 3.01
142 143 5.278022 CCATCATGATCAGCATCTTGAGTTG 60.278 44.000 4.86 0.00 43.11 3.16
143 144 4.840271 TCATGATCAGCATCTTGAGTTGT 58.160 39.130 0.09 0.00 37.96 3.32
144 145 4.634443 TCATGATCAGCATCTTGAGTTGTG 59.366 41.667 0.09 0.00 37.96 3.33
145 146 4.011966 TGATCAGCATCTTGAGTTGTGT 57.988 40.909 0.00 0.00 0.00 3.72
146 147 3.749609 TGATCAGCATCTTGAGTTGTGTG 59.250 43.478 0.00 0.00 0.00 3.82
147 148 2.497138 TCAGCATCTTGAGTTGTGTGG 58.503 47.619 0.00 0.00 0.00 4.17
148 149 2.104622 TCAGCATCTTGAGTTGTGTGGA 59.895 45.455 0.00 0.00 0.00 4.02
149 150 2.880268 CAGCATCTTGAGTTGTGTGGAA 59.120 45.455 0.00 0.00 0.00 3.53
150 151 3.058432 CAGCATCTTGAGTTGTGTGGAAG 60.058 47.826 0.00 0.00 0.00 3.46
151 152 2.880890 GCATCTTGAGTTGTGTGGAAGT 59.119 45.455 0.00 0.00 0.00 3.01
152 153 3.304257 GCATCTTGAGTTGTGTGGAAGTG 60.304 47.826 0.00 0.00 0.00 3.16
153 154 2.917933 TCTTGAGTTGTGTGGAAGTGG 58.082 47.619 0.00 0.00 0.00 4.00
154 155 2.503765 TCTTGAGTTGTGTGGAAGTGGA 59.496 45.455 0.00 0.00 0.00 4.02
155 156 3.136443 TCTTGAGTTGTGTGGAAGTGGAT 59.864 43.478 0.00 0.00 0.00 3.41
156 157 2.849942 TGAGTTGTGTGGAAGTGGATG 58.150 47.619 0.00 0.00 0.00 3.51
157 158 2.172505 TGAGTTGTGTGGAAGTGGATGT 59.827 45.455 0.00 0.00 0.00 3.06
158 159 3.214328 GAGTTGTGTGGAAGTGGATGTT 58.786 45.455 0.00 0.00 0.00 2.71
159 160 3.631250 AGTTGTGTGGAAGTGGATGTTT 58.369 40.909 0.00 0.00 0.00 2.83
160 161 3.381272 AGTTGTGTGGAAGTGGATGTTTG 59.619 43.478 0.00 0.00 0.00 2.93
161 162 3.011566 TGTGTGGAAGTGGATGTTTGT 57.988 42.857 0.00 0.00 0.00 2.83
162 163 4.157849 TGTGTGGAAGTGGATGTTTGTA 57.842 40.909 0.00 0.00 0.00 2.41
163 164 4.724399 TGTGTGGAAGTGGATGTTTGTAT 58.276 39.130 0.00 0.00 0.00 2.29
164 165 4.518590 TGTGTGGAAGTGGATGTTTGTATG 59.481 41.667 0.00 0.00 0.00 2.39
165 166 4.078537 TGTGGAAGTGGATGTTTGTATGG 58.921 43.478 0.00 0.00 0.00 2.74
166 167 4.079253 GTGGAAGTGGATGTTTGTATGGT 58.921 43.478 0.00 0.00 0.00 3.55
167 168 4.156008 GTGGAAGTGGATGTTTGTATGGTC 59.844 45.833 0.00 0.00 0.00 4.02
168 169 3.374058 GGAAGTGGATGTTTGTATGGTCG 59.626 47.826 0.00 0.00 0.00 4.79
169 170 2.356135 AGTGGATGTTTGTATGGTCGC 58.644 47.619 0.00 0.00 0.00 5.19
170 171 2.080693 GTGGATGTTTGTATGGTCGCA 58.919 47.619 0.00 0.00 0.00 5.10
171 172 2.095853 GTGGATGTTTGTATGGTCGCAG 59.904 50.000 0.00 0.00 0.00 5.18
172 173 2.290008 TGGATGTTTGTATGGTCGCAGT 60.290 45.455 0.00 0.00 0.00 4.40
173 174 2.095853 GGATGTTTGTATGGTCGCAGTG 59.904 50.000 0.00 0.00 0.00 3.66
174 175 0.871722 TGTTTGTATGGTCGCAGTGC 59.128 50.000 4.58 4.58 0.00 4.40
175 176 1.156736 GTTTGTATGGTCGCAGTGCT 58.843 50.000 14.33 0.00 0.00 4.40
176 177 1.128692 GTTTGTATGGTCGCAGTGCTC 59.871 52.381 14.33 6.09 0.00 4.26
177 178 0.320050 TTGTATGGTCGCAGTGCTCA 59.680 50.000 14.33 9.19 0.00 4.26
178 179 0.320050 TGTATGGTCGCAGTGCTCAA 59.680 50.000 14.33 0.00 0.00 3.02
179 180 1.002366 GTATGGTCGCAGTGCTCAAG 58.998 55.000 14.33 0.00 0.00 3.02
180 181 0.894835 TATGGTCGCAGTGCTCAAGA 59.105 50.000 14.33 0.00 0.00 3.02
181 182 0.251354 ATGGTCGCAGTGCTCAAGAT 59.749 50.000 14.33 0.00 0.00 2.40
182 183 0.390340 TGGTCGCAGTGCTCAAGATC 60.390 55.000 14.33 3.74 0.00 2.75
183 184 0.390340 GGTCGCAGTGCTCAAGATCA 60.390 55.000 14.33 0.00 0.00 2.92
184 185 1.649664 GTCGCAGTGCTCAAGATCAT 58.350 50.000 14.33 0.00 0.00 2.45
185 186 1.592081 GTCGCAGTGCTCAAGATCATC 59.408 52.381 14.33 0.00 0.00 2.92
186 187 0.575859 CGCAGTGCTCAAGATCATCG 59.424 55.000 14.33 0.00 0.00 3.84
187 188 1.649664 GCAGTGCTCAAGATCATCGT 58.350 50.000 8.18 0.00 0.00 3.73
188 189 2.796032 CGCAGTGCTCAAGATCATCGTA 60.796 50.000 14.33 0.00 0.00 3.43
189 190 2.793790 GCAGTGCTCAAGATCATCGTAG 59.206 50.000 8.18 0.00 0.00 3.51
190 191 3.379240 CAGTGCTCAAGATCATCGTAGG 58.621 50.000 0.00 0.00 0.00 3.18
191 192 2.131183 GTGCTCAAGATCATCGTAGGC 58.869 52.381 0.00 0.00 0.00 3.93
192 193 1.756538 TGCTCAAGATCATCGTAGGCA 59.243 47.619 0.00 0.00 0.00 4.75
193 194 2.366590 TGCTCAAGATCATCGTAGGCAT 59.633 45.455 0.00 0.00 0.00 4.40
194 195 2.992543 GCTCAAGATCATCGTAGGCATC 59.007 50.000 0.00 0.00 0.00 3.91
195 196 3.240884 CTCAAGATCATCGTAGGCATCG 58.759 50.000 0.00 0.00 0.00 3.84
196 197 2.029918 TCAAGATCATCGTAGGCATCGG 60.030 50.000 0.00 0.00 0.00 4.18
197 198 1.911057 AGATCATCGTAGGCATCGGA 58.089 50.000 0.00 0.00 0.00 4.55
198 199 1.542030 AGATCATCGTAGGCATCGGAC 59.458 52.381 0.00 0.00 0.00 4.79
199 200 1.269723 GATCATCGTAGGCATCGGACA 59.730 52.381 0.00 0.00 0.00 4.02
200 201 0.384309 TCATCGTAGGCATCGGACAC 59.616 55.000 2.01 0.00 0.00 3.67
201 202 0.102300 CATCGTAGGCATCGGACACA 59.898 55.000 2.01 0.00 0.00 3.72
202 203 0.821517 ATCGTAGGCATCGGACACAA 59.178 50.000 2.01 0.00 0.00 3.33
203 204 0.108992 TCGTAGGCATCGGACACAAC 60.109 55.000 2.01 0.00 0.00 3.32
204 205 0.389296 CGTAGGCATCGGACACAACA 60.389 55.000 0.00 0.00 0.00 3.33
205 206 1.076332 GTAGGCATCGGACACAACAC 58.924 55.000 0.00 0.00 0.00 3.32
206 207 0.682292 TAGGCATCGGACACAACACA 59.318 50.000 0.00 0.00 0.00 3.72
207 208 0.179032 AGGCATCGGACACAACACAA 60.179 50.000 0.00 0.00 0.00 3.33
208 209 0.238289 GGCATCGGACACAACACAAG 59.762 55.000 0.00 0.00 0.00 3.16
209 210 0.238289 GCATCGGACACAACACAAGG 59.762 55.000 0.00 0.00 0.00 3.61
210 211 1.593196 CATCGGACACAACACAAGGT 58.407 50.000 0.00 0.00 0.00 3.50
211 212 1.264020 CATCGGACACAACACAAGGTG 59.736 52.381 0.00 0.00 40.78 4.00
212 213 0.462937 TCGGACACAACACAAGGTGG 60.463 55.000 1.07 0.00 39.31 4.61
213 214 1.444119 CGGACACAACACAAGGTGGG 61.444 60.000 1.07 0.00 39.31 4.61
214 215 1.106944 GGACACAACACAAGGTGGGG 61.107 60.000 1.07 0.00 39.31 4.96
215 216 0.395173 GACACAACACAAGGTGGGGT 60.395 55.000 1.07 0.00 40.82 4.95
216 217 0.395173 ACACAACACAAGGTGGGGTC 60.395 55.000 1.07 0.00 27.58 4.46
217 218 0.395036 CACAACACAAGGTGGGGTCA 60.395 55.000 1.07 0.00 37.94 4.02
218 219 0.395173 ACAACACAAGGTGGGGTCAC 60.395 55.000 1.07 0.00 42.91 3.67
219 220 0.395036 CAACACAAGGTGGGGTCACA 60.395 55.000 1.07 0.00 45.32 3.58
220 221 0.333312 AACACAAGGTGGGGTCACAA 59.667 50.000 1.07 0.00 45.32 3.33
221 222 0.395173 ACACAAGGTGGGGTCACAAC 60.395 55.000 1.07 0.00 45.32 3.32
222 223 0.395036 CACAAGGTGGGGTCACAACA 60.395 55.000 0.00 0.00 45.32 3.33
223 224 0.555769 ACAAGGTGGGGTCACAACAT 59.444 50.000 0.00 0.00 45.32 2.71
224 225 0.961019 CAAGGTGGGGTCACAACATG 59.039 55.000 0.00 0.00 45.32 3.21
225 226 0.178964 AAGGTGGGGTCACAACATGG 60.179 55.000 0.00 0.00 45.32 3.66
226 227 2.275380 GGTGGGGTCACAACATGGC 61.275 63.158 0.00 0.00 45.32 4.40
227 228 1.228552 GTGGGGTCACAACATGGCT 60.229 57.895 0.00 0.00 43.13 4.75
228 229 1.074775 TGGGGTCACAACATGGCTC 59.925 57.895 0.00 0.00 31.57 4.70
229 230 2.040544 GGGGTCACAACATGGCTCG 61.041 63.158 0.00 0.00 32.23 5.03
230 231 1.003839 GGGTCACAACATGGCTCGA 60.004 57.895 0.00 0.00 31.57 4.04
231 232 0.605319 GGGTCACAACATGGCTCGAA 60.605 55.000 0.00 0.00 31.57 3.71
232 233 0.798776 GGTCACAACATGGCTCGAAG 59.201 55.000 0.00 0.00 31.57 3.79
233 234 0.166814 GTCACAACATGGCTCGAAGC 59.833 55.000 0.00 0.00 41.46 3.86
234 235 0.035317 TCACAACATGGCTCGAAGCT 59.965 50.000 0.00 0.00 41.99 3.74
235 236 0.877071 CACAACATGGCTCGAAGCTT 59.123 50.000 0.00 0.00 41.99 3.74
236 237 1.135859 CACAACATGGCTCGAAGCTTC 60.136 52.381 16.84 16.84 41.99 3.86
237 238 1.159285 CAACATGGCTCGAAGCTTCA 58.841 50.000 25.47 12.01 41.99 3.02
238 239 1.129998 CAACATGGCTCGAAGCTTCAG 59.870 52.381 25.47 20.52 41.99 3.02
239 240 0.322975 ACATGGCTCGAAGCTTCAGT 59.677 50.000 25.47 9.13 41.99 3.41
240 241 0.725686 CATGGCTCGAAGCTTCAGTG 59.274 55.000 25.47 18.06 41.99 3.66
241 242 0.322975 ATGGCTCGAAGCTTCAGTGT 59.677 50.000 25.47 9.57 41.99 3.55
242 243 0.601046 TGGCTCGAAGCTTCAGTGTG 60.601 55.000 25.47 11.50 41.99 3.82
253 254 2.350197 GCTTCAGTGTGTGTTCATGAGC 60.350 50.000 2.05 2.05 0.00 4.26
255 256 2.486918 TCAGTGTGTGTTCATGAGCTG 58.513 47.619 11.09 0.00 0.00 4.24
271 272 4.460807 GAGCTGCTTTTGCTCGGTTGTT 62.461 50.000 2.53 0.00 45.73 2.83
343 350 8.469309 AATATCACTGGATTGGATAAACTTGG 57.531 34.615 0.00 0.00 34.89 3.61
389 396 5.640732 TCGGCTGAAAAATCTTGATTTAGC 58.359 37.500 15.51 15.51 0.00 3.09
446 459 3.632604 TGGTCGTTGAAAATTTGCACCTA 59.367 39.130 0.00 0.00 0.00 3.08
475 488 6.198966 GTCAAGTTCAACACATCATTTTCCAC 59.801 38.462 0.00 0.00 0.00 4.02
481 494 7.523293 TCAACACATCATTTTCCACATAACT 57.477 32.000 0.00 0.00 0.00 2.24
521 534 5.842328 TCCCTTTTTCAGTACTTCTCACCTA 59.158 40.000 0.00 0.00 0.00 3.08
522 535 5.932883 CCCTTTTTCAGTACTTCTCACCTAC 59.067 44.000 0.00 0.00 0.00 3.18
523 536 6.463897 CCCTTTTTCAGTACTTCTCACCTACA 60.464 42.308 0.00 0.00 0.00 2.74
524 537 7.162082 CCTTTTTCAGTACTTCTCACCTACAT 58.838 38.462 0.00 0.00 0.00 2.29
525 538 7.661847 CCTTTTTCAGTACTTCTCACCTACATT 59.338 37.037 0.00 0.00 0.00 2.71
526 539 8.603242 TTTTTCAGTACTTCTCACCTACATTC 57.397 34.615 0.00 0.00 0.00 2.67
527 540 7.540474 TTTCAGTACTTCTCACCTACATTCT 57.460 36.000 0.00 0.00 0.00 2.40
528 541 8.645814 TTTCAGTACTTCTCACCTACATTCTA 57.354 34.615 0.00 0.00 0.00 2.10
529 542 8.824756 TTCAGTACTTCTCACCTACATTCTAT 57.175 34.615 0.00 0.00 0.00 1.98
530 543 8.824756 TCAGTACTTCTCACCTACATTCTATT 57.175 34.615 0.00 0.00 0.00 1.73
540 568 8.375493 TCACCTACATTCTATTAGAACAGGTT 57.625 34.615 22.08 12.23 39.90 3.50
586 616 5.895928 TCCAGATCAACTTATCTCTTCACG 58.104 41.667 0.00 0.00 33.87 4.35
595 625 9.098355 TCAACTTATCTCTTCACGAAATATTGG 57.902 33.333 0.00 0.00 0.00 3.16
607 637 7.304735 TCACGAAATATTGGAACATTCACAAG 58.695 34.615 0.00 0.00 39.30 3.16
715 1742 2.106338 TCAAGGCTCCTCACATTGACAA 59.894 45.455 0.00 0.00 0.00 3.18
897 1935 1.431195 AAGTACCATGGCCACCCACA 61.431 55.000 8.16 0.00 45.77 4.17
916 1954 1.693062 CATCTCTCCACCTCATCCCAG 59.307 57.143 0.00 0.00 0.00 4.45
928 1966 0.035152 CATCCCAGCACCTGCACTTA 60.035 55.000 0.00 0.00 45.16 2.24
982 2020 4.519540 AGTCTGAAACTCTGAGAAGCTC 57.480 45.455 12.44 2.84 30.02 4.09
983 2021 3.894427 AGTCTGAAACTCTGAGAAGCTCA 59.106 43.478 12.44 7.05 38.87 4.26
984 2022 4.527816 AGTCTGAAACTCTGAGAAGCTCAT 59.472 41.667 12.44 0.00 39.92 2.90
1026 2065 0.450583 TTCCGGTGATCGACTTCTCG 59.549 55.000 0.00 0.00 42.43 4.04
1213 2252 4.657824 CCGAACCCGTGCAGACGT 62.658 66.667 0.00 0.00 44.54 4.34
1226 2265 2.435059 GACGTTGGAGAGGCTGGC 60.435 66.667 0.00 0.00 0.00 4.85
1575 2614 0.955428 GCGTCATCCTGCTGTTCCAA 60.955 55.000 0.00 0.00 0.00 3.53
1781 2820 4.675029 CAACCCGGCGTTCGAGGT 62.675 66.667 6.01 1.90 41.75 3.85
1848 2887 2.363359 GGACTACGTGTTCGGGGATTAT 59.637 50.000 0.00 0.00 41.85 1.28
1878 2917 3.802139 TGTACAACAAGCAGAAGTTCGAG 59.198 43.478 0.00 0.00 0.00 4.04
2051 3107 6.559810 CGTAGCAAATATGATGTGGGAAAAA 58.440 36.000 0.00 0.00 0.00 1.94
2073 3129 3.218453 TGTGATTGGTTCGGTGTCAAAT 58.782 40.909 0.00 0.00 0.00 2.32
2074 3130 4.390264 TGTGATTGGTTCGGTGTCAAATA 58.610 39.130 0.00 0.00 0.00 1.40
2075 3131 4.454161 TGTGATTGGTTCGGTGTCAAATAG 59.546 41.667 0.00 0.00 0.00 1.73
2076 3132 4.693566 GTGATTGGTTCGGTGTCAAATAGA 59.306 41.667 0.00 0.00 0.00 1.98
2077 3133 4.935205 TGATTGGTTCGGTGTCAAATAGAG 59.065 41.667 0.00 0.00 0.00 2.43
2123 3179 9.508567 GGATTTTTCATTAGACTAGAACAATGC 57.491 33.333 0.00 1.99 0.00 3.56
2125 3181 7.391148 TTTTCATTAGACTAGAACAATGCCC 57.609 36.000 0.00 0.00 0.00 5.36
2126 3182 4.693283 TCATTAGACTAGAACAATGCCCG 58.307 43.478 0.00 0.00 0.00 6.13
2128 3184 2.386661 AGACTAGAACAATGCCCGTG 57.613 50.000 0.00 0.00 0.00 4.94
2130 3186 1.019278 ACTAGAACAATGCCCGTGCG 61.019 55.000 0.00 0.00 41.78 5.34
2133 3189 0.604243 AGAACAATGCCCGTGCGTTA 60.604 50.000 0.00 0.00 44.83 3.18
2134 3190 0.453782 GAACAATGCCCGTGCGTTAC 60.454 55.000 0.00 0.00 44.83 2.50
2135 3191 1.167155 AACAATGCCCGTGCGTTACA 61.167 50.000 0.00 0.00 44.83 2.41
2136 3192 1.167155 ACAATGCCCGTGCGTTACAA 61.167 50.000 0.00 0.00 44.83 2.41
2137 3193 0.727793 CAATGCCCGTGCGTTACAAC 60.728 55.000 0.00 0.00 44.83 3.32
2154 3210 8.492920 CGTTACAACGGAGTATAAATATTCGA 57.507 34.615 6.60 0.00 45.00 3.71
2155 3211 8.957028 CGTTACAACGGAGTATAAATATTCGAA 58.043 33.333 0.00 0.00 45.00 3.71
2159 3215 9.970395 ACAACGGAGTATAAATATTCGAATACA 57.030 29.630 19.73 8.89 45.00 2.29
2243 3299 7.814587 CCTTATTTGATTGTGGTTTTTCCTCTC 59.185 37.037 0.00 0.00 37.07 3.20
2244 3300 5.529581 TTTGATTGTGGTTTTTCCTCTCC 57.470 39.130 0.00 0.00 37.07 3.71
2246 3302 4.803452 TGATTGTGGTTTTTCCTCTCCTT 58.197 39.130 0.00 0.00 37.07 3.36
2259 3315 7.707624 TTTCCTCTCCTTAGTAACATCGTTA 57.292 36.000 0.00 0.00 0.00 3.18
2266 3322 6.392354 TCCTTAGTAACATCGTTACACCAAG 58.608 40.000 16.86 14.90 0.00 3.61
2277 3333 3.121279 CGTTACACCAAGTCAGATCAACG 59.879 47.826 0.00 0.00 0.00 4.10
2278 3334 4.304110 GTTACACCAAGTCAGATCAACGA 58.696 43.478 0.00 0.00 0.00 3.85
2290 3346 4.099573 TCAGATCAACGAAAGGATCCCTAC 59.900 45.833 8.55 0.00 40.59 3.18
2345 3401 4.758674 CAGAACATCTCCACAAACAGTCAT 59.241 41.667 0.00 0.00 0.00 3.06
2346 3402 4.758674 AGAACATCTCCACAAACAGTCATG 59.241 41.667 0.00 0.00 0.00 3.07
2416 3472 0.037326 TCATGACGCCACTTCACCTC 60.037 55.000 0.00 0.00 0.00 3.85
2429 3485 1.656587 TCACCTCCATACAAGGCTGT 58.343 50.000 0.00 0.00 37.42 4.40
2435 3491 3.034635 CTCCATACAAGGCTGTAGGACT 58.965 50.000 9.33 0.00 41.36 3.85
2445 3501 1.535015 GCTGTAGGACTGTCTCGATGC 60.535 57.143 7.85 4.16 0.00 3.91
2449 3505 0.171455 AGGACTGTCTCGATGCGAAC 59.829 55.000 7.85 0.00 34.74 3.95
2456 3512 2.850060 TGTCTCGATGCGAACGATTAAC 59.150 45.455 0.00 0.00 39.02 2.01
2463 3519 5.517411 TCGATGCGAACGATTAACAATACTT 59.483 36.000 0.00 0.00 34.85 2.24
2526 3582 6.540205 CATGAAGGATATACAACGCATCATG 58.460 40.000 0.00 0.00 36.71 3.07
2538 3594 1.392510 CGCATCATGAGCATACATCCG 59.607 52.381 14.69 0.00 0.00 4.18
2539 3595 1.736126 GCATCATGAGCATACATCCGG 59.264 52.381 0.09 0.00 0.00 5.14
2543 3599 1.265095 CATGAGCATACATCCGGTTGC 59.735 52.381 12.54 9.68 35.27 4.17
2546 3602 0.464373 AGCATACATCCGGTTGCTGG 60.464 55.000 12.54 3.32 40.17 4.85
2583 3639 2.295909 ACAAGCAACACCAATAACGCAT 59.704 40.909 0.00 0.00 0.00 4.73
2632 3688 5.478407 GCCACAACAAAGCCATAGTAAAAT 58.522 37.500 0.00 0.00 0.00 1.82
2637 3693 8.487176 CACAACAAAGCCATAGTAAAATGAAAC 58.513 33.333 0.00 0.00 0.00 2.78
2642 3698 8.739972 CAAAGCCATAGTAAAATGAAACTAGGT 58.260 33.333 0.00 0.00 0.00 3.08
2643 3699 7.865706 AGCCATAGTAAAATGAAACTAGGTG 57.134 36.000 0.00 0.00 0.00 4.00
2644 3700 7.402862 AGCCATAGTAAAATGAAACTAGGTGT 58.597 34.615 0.00 0.00 0.00 4.16
2645 3701 7.888546 AGCCATAGTAAAATGAAACTAGGTGTT 59.111 33.333 0.00 0.00 41.29 3.32
2646 3702 7.968405 GCCATAGTAAAATGAAACTAGGTGTTG 59.032 37.037 0.00 0.00 39.13 3.33
2647 3703 9.226606 CCATAGTAAAATGAAACTAGGTGTTGA 57.773 33.333 0.00 0.00 39.13 3.18
2649 3705 7.745620 AGTAAAATGAAACTAGGTGTTGAGG 57.254 36.000 0.00 0.00 39.13 3.86
2650 3706 7.514721 AGTAAAATGAAACTAGGTGTTGAGGA 58.485 34.615 0.00 0.00 39.13 3.71
2651 3707 8.164070 AGTAAAATGAAACTAGGTGTTGAGGAT 58.836 33.333 0.00 0.00 39.13 3.24
2652 3708 9.444600 GTAAAATGAAACTAGGTGTTGAGGATA 57.555 33.333 0.00 0.00 39.13 2.59
2654 3710 8.511604 AAATGAAACTAGGTGTTGAGGATATG 57.488 34.615 0.00 0.00 39.13 1.78
2655 3711 5.989477 TGAAACTAGGTGTTGAGGATATGG 58.011 41.667 0.00 0.00 39.13 2.74
2656 3712 5.724370 TGAAACTAGGTGTTGAGGATATGGA 59.276 40.000 0.00 0.00 39.13 3.41
2657 3713 5.615925 AACTAGGTGTTGAGGATATGGAC 57.384 43.478 0.00 0.00 37.52 4.02
2658 3714 3.967987 ACTAGGTGTTGAGGATATGGACC 59.032 47.826 0.00 0.00 0.00 4.46
2659 3715 3.136641 AGGTGTTGAGGATATGGACCT 57.863 47.619 0.00 0.00 40.80 3.85
2660 3716 2.774234 AGGTGTTGAGGATATGGACCTG 59.226 50.000 0.00 0.00 37.93 4.00
2661 3717 2.158755 GGTGTTGAGGATATGGACCTGG 60.159 54.545 0.00 0.00 37.93 4.45
2662 3718 2.126882 TGTTGAGGATATGGACCTGGG 58.873 52.381 0.00 0.00 37.93 4.45
2663 3719 1.421646 GTTGAGGATATGGACCTGGGG 59.578 57.143 0.00 0.00 37.93 4.96
2664 3720 0.104462 TGAGGATATGGACCTGGGGG 60.104 60.000 0.00 0.00 37.93 5.40
2689 3745 3.793888 CCAGGAGGGCCGGGTTAC 61.794 72.222 2.18 0.00 43.74 2.50
2690 3746 2.687566 CAGGAGGGCCGGGTTACT 60.688 66.667 2.18 0.00 39.96 2.24
2691 3747 2.124312 AGGAGGGCCGGGTTACTT 59.876 61.111 2.18 0.00 39.96 2.24
2692 3748 1.993948 AGGAGGGCCGGGTTACTTC 60.994 63.158 2.18 0.00 39.96 3.01
2693 3749 2.295602 GGAGGGCCGGGTTACTTCA 61.296 63.158 2.18 0.00 0.00 3.02
2694 3750 1.681076 GAGGGCCGGGTTACTTCAA 59.319 57.895 2.18 0.00 0.00 2.69
2695 3751 0.392595 GAGGGCCGGGTTACTTCAAG 60.393 60.000 2.18 0.00 0.00 3.02
2696 3752 1.378119 GGGCCGGGTTACTTCAAGG 60.378 63.158 2.18 0.00 0.00 3.61
2697 3753 1.681076 GGCCGGGTTACTTCAAGGA 59.319 57.895 2.18 0.00 0.00 3.36
2698 3754 0.255033 GGCCGGGTTACTTCAAGGAT 59.745 55.000 2.18 0.00 0.00 3.24
2699 3755 1.664873 GCCGGGTTACTTCAAGGATC 58.335 55.000 2.18 0.00 0.00 3.36
2700 3756 1.065709 GCCGGGTTACTTCAAGGATCA 60.066 52.381 2.18 0.00 0.00 2.92
2701 3757 2.421529 GCCGGGTTACTTCAAGGATCAT 60.422 50.000 2.18 0.00 0.00 2.45
2702 3758 3.886123 CCGGGTTACTTCAAGGATCATT 58.114 45.455 0.00 0.00 0.00 2.57
2703 3759 4.685030 GCCGGGTTACTTCAAGGATCATTA 60.685 45.833 2.18 0.00 0.00 1.90
2704 3760 4.814771 CCGGGTTACTTCAAGGATCATTAC 59.185 45.833 0.00 0.00 0.00 1.89
2705 3761 4.814771 CGGGTTACTTCAAGGATCATTACC 59.185 45.833 0.00 0.00 0.00 2.85
2706 3762 5.628200 CGGGTTACTTCAAGGATCATTACCA 60.628 44.000 9.10 0.00 0.00 3.25
2707 3763 5.823045 GGGTTACTTCAAGGATCATTACCAG 59.177 44.000 9.10 1.56 0.00 4.00
2708 3764 6.352737 GGGTTACTTCAAGGATCATTACCAGA 60.353 42.308 9.10 0.00 0.00 3.86
2709 3765 7.110155 GGTTACTTCAAGGATCATTACCAGAA 58.890 38.462 3.25 0.00 0.00 3.02
2710 3766 7.281100 GGTTACTTCAAGGATCATTACCAGAAG 59.719 40.741 13.34 13.34 42.19 2.85
2711 3767 5.189180 ACTTCAAGGATCATTACCAGAAGC 58.811 41.667 14.34 0.00 41.24 3.86
2712 3768 4.156455 TCAAGGATCATTACCAGAAGCC 57.844 45.455 0.00 0.00 0.00 4.35
2713 3769 3.117888 TCAAGGATCATTACCAGAAGCCC 60.118 47.826 0.00 0.00 0.00 5.19
2714 3770 1.417890 AGGATCATTACCAGAAGCCCG 59.582 52.381 0.00 0.00 0.00 6.13
2715 3771 1.543429 GGATCATTACCAGAAGCCCGG 60.543 57.143 0.00 0.00 0.00 5.73
2716 3772 1.416401 GATCATTACCAGAAGCCCGGA 59.584 52.381 0.73 0.00 0.00 5.14
2717 3773 0.830648 TCATTACCAGAAGCCCGGAG 59.169 55.000 0.73 0.00 0.00 4.63
2718 3774 0.815615 CATTACCAGAAGCCCGGAGC 60.816 60.000 0.73 4.57 44.25 4.70
2728 3784 2.768834 GCCCGGAGCTAAGTTTCAG 58.231 57.895 0.73 0.00 38.99 3.02
2729 3785 0.249398 GCCCGGAGCTAAGTTTCAGA 59.751 55.000 0.73 0.00 38.99 3.27
2730 3786 1.338769 GCCCGGAGCTAAGTTTCAGAA 60.339 52.381 0.73 0.00 38.99 3.02
2731 3787 2.681097 GCCCGGAGCTAAGTTTCAGAAT 60.681 50.000 0.73 0.00 38.99 2.40
2732 3788 3.431766 GCCCGGAGCTAAGTTTCAGAATA 60.432 47.826 0.73 0.00 38.99 1.75
2733 3789 4.766375 CCCGGAGCTAAGTTTCAGAATAA 58.234 43.478 0.73 0.00 0.00 1.40
2734 3790 5.368989 CCCGGAGCTAAGTTTCAGAATAAT 58.631 41.667 0.73 0.00 0.00 1.28
2735 3791 5.237344 CCCGGAGCTAAGTTTCAGAATAATG 59.763 44.000 0.73 0.00 0.00 1.90
2736 3792 5.237344 CCGGAGCTAAGTTTCAGAATAATGG 59.763 44.000 0.00 0.00 0.00 3.16
2737 3793 5.237344 CGGAGCTAAGTTTCAGAATAATGGG 59.763 44.000 0.00 0.00 0.00 4.00
2738 3794 5.009110 GGAGCTAAGTTTCAGAATAATGGGC 59.991 44.000 0.00 0.00 0.00 5.36
2739 3795 4.889995 AGCTAAGTTTCAGAATAATGGGCC 59.110 41.667 0.00 0.00 0.00 5.80
2740 3796 4.644685 GCTAAGTTTCAGAATAATGGGCCA 59.355 41.667 9.61 9.61 0.00 5.36
2741 3797 5.221126 GCTAAGTTTCAGAATAATGGGCCAG 60.221 44.000 13.78 0.00 0.00 4.85
2742 3798 3.635591 AGTTTCAGAATAATGGGCCAGG 58.364 45.455 13.78 0.00 0.00 4.45
2743 3799 2.695147 GTTTCAGAATAATGGGCCAGGG 59.305 50.000 13.78 0.00 0.00 4.45
2744 3800 1.905839 TCAGAATAATGGGCCAGGGA 58.094 50.000 13.78 0.00 0.00 4.20
2745 3801 2.431997 TCAGAATAATGGGCCAGGGAT 58.568 47.619 13.78 1.63 0.00 3.85
2746 3802 2.108776 TCAGAATAATGGGCCAGGGATG 59.891 50.000 13.78 6.15 0.00 3.51
2747 3803 1.430464 AGAATAATGGGCCAGGGATGG 59.570 52.381 13.78 0.00 0.00 3.51
2748 3804 0.488668 AATAATGGGCCAGGGATGGG 59.511 55.000 13.78 0.00 0.00 4.00
2755 3811 2.914289 CCAGGGATGGGCTGAGAC 59.086 66.667 0.00 0.00 0.00 3.36
2756 3812 2.750657 CCAGGGATGGGCTGAGACC 61.751 68.421 0.00 0.00 0.00 3.85
2763 3819 4.217112 GGGCTGAGACCCGGATAT 57.783 61.111 0.73 0.00 40.98 1.63
2764 3820 1.674057 GGGCTGAGACCCGGATATG 59.326 63.158 0.73 0.00 40.98 1.78
2765 3821 1.674057 GGCTGAGACCCGGATATGG 59.326 63.158 0.73 0.00 0.00 2.74
2766 3822 1.004440 GCTGAGACCCGGATATGGC 60.004 63.158 0.73 0.00 0.00 4.40
2767 3823 1.476007 GCTGAGACCCGGATATGGCT 61.476 60.000 0.73 0.00 0.00 4.75
2768 3824 1.051812 CTGAGACCCGGATATGGCTT 58.948 55.000 0.73 0.00 0.00 4.35
2769 3825 2.248248 CTGAGACCCGGATATGGCTTA 58.752 52.381 0.73 0.00 0.00 3.09
2770 3826 2.632996 CTGAGACCCGGATATGGCTTAA 59.367 50.000 0.73 0.00 0.00 1.85
2771 3827 3.042682 TGAGACCCGGATATGGCTTAAA 58.957 45.455 0.73 0.00 0.00 1.52
2772 3828 3.071023 TGAGACCCGGATATGGCTTAAAG 59.929 47.826 0.73 0.00 0.00 1.85
2773 3829 2.152016 GACCCGGATATGGCTTAAAGC 58.848 52.381 0.73 0.00 41.46 3.51
2787 3843 5.152923 GCTTAAAGCCCGTAGTTACAATC 57.847 43.478 0.00 0.00 34.48 2.67
2788 3844 4.632688 GCTTAAAGCCCGTAGTTACAATCA 59.367 41.667 0.00 0.00 34.48 2.57
2789 3845 5.296035 GCTTAAAGCCCGTAGTTACAATCAT 59.704 40.000 0.00 0.00 34.48 2.45
2790 3846 6.183360 GCTTAAAGCCCGTAGTTACAATCATT 60.183 38.462 0.00 0.00 34.48 2.57
2791 3847 5.560966 AAAGCCCGTAGTTACAATCATTG 57.439 39.130 0.00 0.00 0.00 2.82
2793 3849 4.585879 AGCCCGTAGTTACAATCATTGTT 58.414 39.130 8.69 0.00 42.22 2.83
2794 3850 5.736813 AGCCCGTAGTTACAATCATTGTTA 58.263 37.500 8.69 0.00 42.22 2.41
2795 3851 6.354130 AGCCCGTAGTTACAATCATTGTTAT 58.646 36.000 8.69 0.00 42.22 1.89
2796 3852 7.502696 AGCCCGTAGTTACAATCATTGTTATA 58.497 34.615 8.69 0.00 42.22 0.98
2797 3853 7.656137 AGCCCGTAGTTACAATCATTGTTATAG 59.344 37.037 8.69 0.00 42.22 1.31
2798 3854 7.440255 GCCCGTAGTTACAATCATTGTTATAGT 59.560 37.037 8.69 0.97 42.22 2.12
2799 3855 9.970395 CCCGTAGTTACAATCATTGTTATAGTA 57.030 33.333 8.69 0.05 42.22 1.82
2816 3872 8.680903 TGTTATAGTAGACTTGTAGTGTAAGGC 58.319 37.037 0.00 0.00 33.25 4.35
2817 3873 8.680903 GTTATAGTAGACTTGTAGTGTAAGGCA 58.319 37.037 0.00 0.00 35.58 4.75
2818 3874 7.713734 ATAGTAGACTTGTAGTGTAAGGCAA 57.286 36.000 0.00 0.00 35.58 4.52
2819 3875 6.026947 AGTAGACTTGTAGTGTAAGGCAAG 57.973 41.667 0.00 0.00 42.65 4.01
2838 3894 5.470845 CAAGTATTGTTTTAGAGCCCGAG 57.529 43.478 0.00 0.00 42.34 4.63
2839 3895 3.532542 AGTATTGTTTTAGAGCCCGAGC 58.467 45.455 0.00 0.00 40.32 5.03
2840 3896 1.751437 ATTGTTTTAGAGCCCGAGCC 58.249 50.000 0.00 0.00 41.25 4.70
2841 3897 0.672401 TTGTTTTAGAGCCCGAGCCG 60.672 55.000 0.00 0.00 41.25 5.52
2853 3909 3.258225 CGAGCCGGACACTCTTATG 57.742 57.895 5.05 0.00 31.71 1.90
2854 3910 0.738975 CGAGCCGGACACTCTTATGA 59.261 55.000 5.05 0.00 31.71 2.15
2855 3911 1.268794 CGAGCCGGACACTCTTATGAG 60.269 57.143 5.05 4.14 45.43 2.90
2856 3912 0.461961 AGCCGGACACTCTTATGAGC 59.538 55.000 5.05 0.00 43.85 4.26
2857 3913 0.530870 GCCGGACACTCTTATGAGCC 60.531 60.000 5.05 0.00 43.85 4.70
2858 3914 0.249073 CCGGACACTCTTATGAGCCG 60.249 60.000 0.00 13.06 43.85 5.52
2859 3915 0.249073 CGGACACTCTTATGAGCCGG 60.249 60.000 12.49 0.00 43.85 6.13
2860 3916 0.530870 GGACACTCTTATGAGCCGGC 60.531 60.000 21.89 21.89 43.85 6.13
2861 3917 0.530870 GACACTCTTATGAGCCGGCC 60.531 60.000 26.15 15.80 43.85 6.13
2862 3918 1.592669 CACTCTTATGAGCCGGCCG 60.593 63.158 26.15 21.04 43.85 6.13
2863 3919 2.029666 CTCTTATGAGCCGGCCGG 59.970 66.667 40.26 40.26 33.12 6.13
2864 3920 3.521529 CTCTTATGAGCCGGCCGGG 62.522 68.421 43.31 25.74 39.58 5.73
2865 3921 3.546543 CTTATGAGCCGGCCGGGA 61.547 66.667 43.31 10.93 38.47 5.14
2866 3922 3.809374 CTTATGAGCCGGCCGGGAC 62.809 68.421 43.31 28.68 38.47 4.46
2867 3923 4.853142 TATGAGCCGGCCGGGACT 62.853 66.667 43.31 32.89 38.47 3.85
2871 3927 4.772231 AGCCGGCCGGGACTCTAA 62.772 66.667 43.31 0.00 38.47 2.10
2872 3928 4.222847 GCCGGCCGGGACTCTAAG 62.223 72.222 43.31 17.04 38.47 2.18
2873 3929 3.537874 CCGGCCGGGACTCTAAGG 61.538 72.222 37.42 6.27 38.47 2.69
2874 3930 3.537874 CGGCCGGGACTCTAAGGG 61.538 72.222 20.10 0.00 0.00 3.95
2875 3931 3.862991 GGCCGGGACTCTAAGGGC 61.863 72.222 2.18 0.00 43.01 5.19
2876 3932 2.764547 GCCGGGACTCTAAGGGCT 60.765 66.667 2.18 0.00 40.59 5.19
2877 3933 3.095347 GCCGGGACTCTAAGGGCTG 62.095 68.421 2.18 0.00 40.59 4.85
2878 3934 2.501610 CGGGACTCTAAGGGCTGC 59.498 66.667 0.00 0.00 0.00 5.25
2879 3935 2.060980 CGGGACTCTAAGGGCTGCT 61.061 63.158 0.00 0.00 0.00 4.24
2880 3936 1.524482 GGGACTCTAAGGGCTGCTG 59.476 63.158 0.00 0.00 0.00 4.41
2881 3937 1.524482 GGACTCTAAGGGCTGCTGG 59.476 63.158 0.00 0.00 0.00 4.85
2882 3938 1.524482 GACTCTAAGGGCTGCTGGG 59.476 63.158 0.00 0.00 0.00 4.45
2883 3939 2.191641 CTCTAAGGGCTGCTGGGC 59.808 66.667 0.00 0.00 40.05 5.36
2884 3940 3.746949 CTCTAAGGGCTGCTGGGCG 62.747 68.421 0.00 0.00 41.87 6.13
2885 3941 4.101448 CTAAGGGCTGCTGGGCGT 62.101 66.667 0.00 0.00 41.87 5.68
2886 3942 4.096003 TAAGGGCTGCTGGGCGTC 62.096 66.667 0.00 0.00 41.87 5.19
2902 3958 3.955650 GCGTCAGCCTCCCTATATAAA 57.044 47.619 0.00 0.00 37.42 1.40
2903 3959 3.851098 GCGTCAGCCTCCCTATATAAAG 58.149 50.000 0.00 0.00 37.42 1.85
2904 3960 3.368531 GCGTCAGCCTCCCTATATAAAGG 60.369 52.174 2.47 2.47 37.42 3.11
2905 3961 6.423712 GCGTCAGCCTCCCTATATAAAGGG 62.424 54.167 4.33 4.33 46.97 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.123756 CGACTGTTTTTCCTCGTACGC 59.876 52.381 11.24 0.00 0.00 4.42
4 5 0.179067 TGCCGACTGTTTTTCCTCGT 60.179 50.000 0.00 0.00 0.00 4.18
5 6 1.156736 ATGCCGACTGTTTTTCCTCG 58.843 50.000 0.00 0.00 0.00 4.63
6 7 2.552315 TCAATGCCGACTGTTTTTCCTC 59.448 45.455 0.00 0.00 0.00 3.71
7 8 2.582052 TCAATGCCGACTGTTTTTCCT 58.418 42.857 0.00 0.00 0.00 3.36
8 9 3.575965 ATCAATGCCGACTGTTTTTCC 57.424 42.857 0.00 0.00 0.00 3.13
9 10 4.744631 ACAAATCAATGCCGACTGTTTTTC 59.255 37.500 0.00 0.00 0.00 2.29
10 11 4.507388 CACAAATCAATGCCGACTGTTTTT 59.493 37.500 0.00 0.00 0.00 1.94
11 12 4.050553 CACAAATCAATGCCGACTGTTTT 58.949 39.130 0.00 0.00 0.00 2.43
12 13 3.552684 CCACAAATCAATGCCGACTGTTT 60.553 43.478 0.00 0.00 0.00 2.83
13 14 2.030007 CCACAAATCAATGCCGACTGTT 60.030 45.455 0.00 0.00 0.00 3.16
14 15 1.541147 CCACAAATCAATGCCGACTGT 59.459 47.619 0.00 0.00 0.00 3.55
15 16 1.811965 TCCACAAATCAATGCCGACTG 59.188 47.619 0.00 0.00 0.00 3.51
16 17 2.198827 TCCACAAATCAATGCCGACT 57.801 45.000 0.00 0.00 0.00 4.18
17 18 2.030363 TGTTCCACAAATCAATGCCGAC 60.030 45.455 0.00 0.00 0.00 4.79
18 19 2.234143 TGTTCCACAAATCAATGCCGA 58.766 42.857 0.00 0.00 0.00 5.54
19 20 2.721274 TGTTCCACAAATCAATGCCG 57.279 45.000 0.00 0.00 0.00 5.69
20 21 4.240096 CTCTTGTTCCACAAATCAATGCC 58.760 43.478 0.00 0.00 37.69 4.40
21 22 3.676646 GCTCTTGTTCCACAAATCAATGC 59.323 43.478 0.00 0.00 37.69 3.56
22 23 4.240096 GGCTCTTGTTCCACAAATCAATG 58.760 43.478 0.00 0.00 37.69 2.82
23 24 3.259123 GGGCTCTTGTTCCACAAATCAAT 59.741 43.478 0.00 0.00 37.69 2.57
24 25 2.627699 GGGCTCTTGTTCCACAAATCAA 59.372 45.455 0.00 0.00 37.69 2.57
25 26 2.238521 GGGCTCTTGTTCCACAAATCA 58.761 47.619 0.00 0.00 37.69 2.57
26 27 1.546029 GGGGCTCTTGTTCCACAAATC 59.454 52.381 0.00 0.00 37.69 2.17
27 28 1.632589 GGGGCTCTTGTTCCACAAAT 58.367 50.000 0.00 0.00 37.69 2.32
28 29 0.469144 GGGGGCTCTTGTTCCACAAA 60.469 55.000 0.00 0.00 37.69 2.83
29 30 1.152830 GGGGGCTCTTGTTCCACAA 59.847 57.895 0.00 0.00 36.54 3.33
30 31 1.434513 ATGGGGGCTCTTGTTCCACA 61.435 55.000 0.00 0.00 38.46 4.17
31 32 0.967380 CATGGGGGCTCTTGTTCCAC 60.967 60.000 0.00 0.00 0.00 4.02
32 33 1.383799 CATGGGGGCTCTTGTTCCA 59.616 57.895 0.00 0.00 0.00 3.53
33 34 1.380380 CCATGGGGGCTCTTGTTCC 60.380 63.158 2.85 0.00 0.00 3.62
34 35 4.344237 CCATGGGGGCTCTTGTTC 57.656 61.111 2.85 0.00 0.00 3.18
43 44 0.481567 ATGATTCAGAGCCATGGGGG 59.518 55.000 15.13 0.00 40.85 5.40
44 45 2.787994 GTATGATTCAGAGCCATGGGG 58.212 52.381 15.13 0.00 37.18 4.96
45 46 2.420642 CGTATGATTCAGAGCCATGGG 58.579 52.381 15.13 0.00 0.00 4.00
46 47 2.037641 TCCGTATGATTCAGAGCCATGG 59.962 50.000 7.63 7.63 0.00 3.66
47 48 3.391506 TCCGTATGATTCAGAGCCATG 57.608 47.619 0.00 0.00 0.00 3.66
48 49 3.367806 CGATCCGTATGATTCAGAGCCAT 60.368 47.826 0.00 0.00 32.41 4.40
49 50 2.029918 CGATCCGTATGATTCAGAGCCA 60.030 50.000 0.00 0.00 32.41 4.75
50 51 2.600731 CGATCCGTATGATTCAGAGCC 58.399 52.381 0.00 0.00 32.41 4.70
51 52 1.989165 GCGATCCGTATGATTCAGAGC 59.011 52.381 0.00 0.00 32.41 4.09
52 53 3.288809 TGCGATCCGTATGATTCAGAG 57.711 47.619 0.00 0.00 32.41 3.35
53 54 3.942130 ATGCGATCCGTATGATTCAGA 57.058 42.857 0.00 0.00 32.41 3.27
60 61 2.061773 GAAGACCATGCGATCCGTATG 58.938 52.381 9.81 9.81 46.34 2.39
61 62 1.686587 TGAAGACCATGCGATCCGTAT 59.313 47.619 0.00 0.00 31.48 3.06
62 63 1.067060 CTGAAGACCATGCGATCCGTA 59.933 52.381 0.00 0.00 0.00 4.02
63 64 0.179100 CTGAAGACCATGCGATCCGT 60.179 55.000 0.00 0.00 0.00 4.69
64 65 0.103026 TCTGAAGACCATGCGATCCG 59.897 55.000 0.00 0.00 0.00 4.18
65 66 2.208431 CTTCTGAAGACCATGCGATCC 58.792 52.381 12.01 0.00 0.00 3.36
66 67 2.159043 TCCTTCTGAAGACCATGCGATC 60.159 50.000 18.68 0.00 0.00 3.69
67 68 1.833630 TCCTTCTGAAGACCATGCGAT 59.166 47.619 18.68 0.00 0.00 4.58
68 69 1.266178 TCCTTCTGAAGACCATGCGA 58.734 50.000 18.68 2.86 0.00 5.10
69 70 2.322355 ATCCTTCTGAAGACCATGCG 57.678 50.000 18.68 0.45 0.00 4.73
70 71 3.614092 TGAATCCTTCTGAAGACCATGC 58.386 45.455 18.68 6.92 0.00 4.06
71 72 4.080695 TCCTGAATCCTTCTGAAGACCATG 60.081 45.833 18.68 1.86 0.00 3.66
72 73 4.107072 TCCTGAATCCTTCTGAAGACCAT 58.893 43.478 18.68 5.03 0.00 3.55
73 74 3.517100 CTCCTGAATCCTTCTGAAGACCA 59.483 47.826 18.68 9.21 0.00 4.02
74 75 3.681313 GCTCCTGAATCCTTCTGAAGACC 60.681 52.174 18.68 5.41 0.00 3.85
75 76 3.055530 TGCTCCTGAATCCTTCTGAAGAC 60.056 47.826 18.68 7.69 0.00 3.01
76 77 3.176411 TGCTCCTGAATCCTTCTGAAGA 58.824 45.455 18.68 5.61 0.00 2.87
77 78 3.197333 TCTGCTCCTGAATCCTTCTGAAG 59.803 47.826 10.46 10.46 0.00 3.02
78 79 3.176411 TCTGCTCCTGAATCCTTCTGAA 58.824 45.455 0.00 0.00 0.00 3.02
79 80 2.825223 TCTGCTCCTGAATCCTTCTGA 58.175 47.619 0.00 0.00 0.00 3.27
80 81 3.842007 ATCTGCTCCTGAATCCTTCTG 57.158 47.619 0.00 0.00 0.00 3.02
81 82 4.555689 AGTATCTGCTCCTGAATCCTTCT 58.444 43.478 0.00 0.00 0.00 2.85
82 83 4.881920 GAGTATCTGCTCCTGAATCCTTC 58.118 47.826 0.00 0.00 0.00 3.46
83 84 4.953940 GAGTATCTGCTCCTGAATCCTT 57.046 45.455 0.00 0.00 0.00 3.36
96 97 4.617067 GGATACACATCGCCAGAGTATCTG 60.617 50.000 0.00 0.00 46.49 2.90
97 98 3.508012 GGATACACATCGCCAGAGTATCT 59.492 47.826 0.00 0.00 40.35 1.98
98 99 3.255888 TGGATACACATCGCCAGAGTATC 59.744 47.826 0.00 0.00 46.17 2.24
99 100 3.230976 TGGATACACATCGCCAGAGTAT 58.769 45.455 0.00 0.00 46.17 2.12
100 101 2.661718 TGGATACACATCGCCAGAGTA 58.338 47.619 0.00 0.00 46.17 2.59
101 102 1.485124 TGGATACACATCGCCAGAGT 58.515 50.000 0.00 0.00 46.17 3.24
109 110 5.880887 ATGCTGATCATGATGGATACACATC 59.119 40.000 14.30 0.00 45.79 3.06
110 111 5.816682 ATGCTGATCATGATGGATACACAT 58.183 37.500 14.30 7.92 41.87 3.21
111 112 5.012768 AGATGCTGATCATGATGGATACACA 59.987 40.000 14.30 1.77 43.08 3.72
112 113 5.489249 AGATGCTGATCATGATGGATACAC 58.511 41.667 14.30 0.00 43.08 2.90
113 114 5.757099 AGATGCTGATCATGATGGATACA 57.243 39.130 14.30 3.31 44.07 2.29
114 115 6.171213 TCAAGATGCTGATCATGATGGATAC 58.829 40.000 14.30 0.00 32.60 2.24
115 116 6.013639 ACTCAAGATGCTGATCATGATGGATA 60.014 38.462 14.30 0.00 36.10 2.59
116 117 5.221945 ACTCAAGATGCTGATCATGATGGAT 60.222 40.000 14.30 6.33 36.10 3.41
117 118 4.102681 ACTCAAGATGCTGATCATGATGGA 59.897 41.667 14.30 0.73 36.10 3.41
118 119 4.390264 ACTCAAGATGCTGATCATGATGG 58.610 43.478 14.30 6.91 36.10 3.51
119 120 5.297029 ACAACTCAAGATGCTGATCATGATG 59.703 40.000 14.30 0.17 36.10 3.07
120 121 5.297029 CACAACTCAAGATGCTGATCATGAT 59.703 40.000 8.25 8.25 36.10 2.45
121 122 4.634443 CACAACTCAAGATGCTGATCATGA 59.366 41.667 0.00 0.00 34.64 3.07
122 123 4.395231 ACACAACTCAAGATGCTGATCATG 59.605 41.667 0.00 0.00 35.05 3.07
123 124 4.395231 CACACAACTCAAGATGCTGATCAT 59.605 41.667 0.00 0.00 38.32 2.45
124 125 3.749609 CACACAACTCAAGATGCTGATCA 59.250 43.478 0.00 0.00 0.00 2.92
125 126 3.126514 CCACACAACTCAAGATGCTGATC 59.873 47.826 0.00 0.00 0.00 2.92
126 127 3.079578 CCACACAACTCAAGATGCTGAT 58.920 45.455 0.00 0.00 0.00 2.90
127 128 2.104622 TCCACACAACTCAAGATGCTGA 59.895 45.455 0.00 0.00 0.00 4.26
128 129 2.497138 TCCACACAACTCAAGATGCTG 58.503 47.619 0.00 0.00 0.00 4.41
129 130 2.936919 TCCACACAACTCAAGATGCT 57.063 45.000 0.00 0.00 0.00 3.79
130 131 2.880890 ACTTCCACACAACTCAAGATGC 59.119 45.455 0.00 0.00 0.00 3.91
131 132 3.251729 CCACTTCCACACAACTCAAGATG 59.748 47.826 0.00 0.00 0.00 2.90
132 133 3.136443 TCCACTTCCACACAACTCAAGAT 59.864 43.478 0.00 0.00 0.00 2.40
133 134 2.503765 TCCACTTCCACACAACTCAAGA 59.496 45.455 0.00 0.00 0.00 3.02
134 135 2.917933 TCCACTTCCACACAACTCAAG 58.082 47.619 0.00 0.00 0.00 3.02
135 136 3.213506 CATCCACTTCCACACAACTCAA 58.786 45.455 0.00 0.00 0.00 3.02
136 137 2.172505 ACATCCACTTCCACACAACTCA 59.827 45.455 0.00 0.00 0.00 3.41
137 138 2.851195 ACATCCACTTCCACACAACTC 58.149 47.619 0.00 0.00 0.00 3.01
138 139 3.297134 AACATCCACTTCCACACAACT 57.703 42.857 0.00 0.00 0.00 3.16
139 140 3.130340 ACAAACATCCACTTCCACACAAC 59.870 43.478 0.00 0.00 0.00 3.32
140 141 3.360867 ACAAACATCCACTTCCACACAA 58.639 40.909 0.00 0.00 0.00 3.33
141 142 3.011566 ACAAACATCCACTTCCACACA 57.988 42.857 0.00 0.00 0.00 3.72
142 143 4.082787 CCATACAAACATCCACTTCCACAC 60.083 45.833 0.00 0.00 0.00 3.82
143 144 4.078537 CCATACAAACATCCACTTCCACA 58.921 43.478 0.00 0.00 0.00 4.17
144 145 4.079253 ACCATACAAACATCCACTTCCAC 58.921 43.478 0.00 0.00 0.00 4.02
145 146 4.331968 GACCATACAAACATCCACTTCCA 58.668 43.478 0.00 0.00 0.00 3.53
146 147 3.374058 CGACCATACAAACATCCACTTCC 59.626 47.826 0.00 0.00 0.00 3.46
147 148 3.181510 GCGACCATACAAACATCCACTTC 60.182 47.826 0.00 0.00 0.00 3.01
148 149 2.747446 GCGACCATACAAACATCCACTT 59.253 45.455 0.00 0.00 0.00 3.16
149 150 2.290008 TGCGACCATACAAACATCCACT 60.290 45.455 0.00 0.00 0.00 4.00
150 151 2.080693 TGCGACCATACAAACATCCAC 58.919 47.619 0.00 0.00 0.00 4.02
151 152 2.290008 ACTGCGACCATACAAACATCCA 60.290 45.455 0.00 0.00 0.00 3.41
152 153 2.095853 CACTGCGACCATACAAACATCC 59.904 50.000 0.00 0.00 0.00 3.51
153 154 2.476185 GCACTGCGACCATACAAACATC 60.476 50.000 0.00 0.00 0.00 3.06
154 155 1.468520 GCACTGCGACCATACAAACAT 59.531 47.619 0.00 0.00 0.00 2.71
155 156 0.871722 GCACTGCGACCATACAAACA 59.128 50.000 0.00 0.00 0.00 2.83
156 157 1.128692 GAGCACTGCGACCATACAAAC 59.871 52.381 0.00 0.00 0.00 2.93
157 158 1.270571 TGAGCACTGCGACCATACAAA 60.271 47.619 0.00 0.00 0.00 2.83
158 159 0.320050 TGAGCACTGCGACCATACAA 59.680 50.000 0.00 0.00 0.00 2.41
159 160 0.320050 TTGAGCACTGCGACCATACA 59.680 50.000 0.00 0.00 0.00 2.29
160 161 1.002366 CTTGAGCACTGCGACCATAC 58.998 55.000 0.00 0.00 0.00 2.39
161 162 0.894835 TCTTGAGCACTGCGACCATA 59.105 50.000 0.00 0.00 0.00 2.74
162 163 0.251354 ATCTTGAGCACTGCGACCAT 59.749 50.000 0.00 0.00 0.00 3.55
163 164 0.390340 GATCTTGAGCACTGCGACCA 60.390 55.000 0.00 0.00 0.00 4.02
164 165 0.390340 TGATCTTGAGCACTGCGACC 60.390 55.000 0.00 0.00 0.00 4.79
165 166 1.592081 GATGATCTTGAGCACTGCGAC 59.408 52.381 0.00 0.00 0.00 5.19
166 167 1.800286 CGATGATCTTGAGCACTGCGA 60.800 52.381 0.00 0.00 0.00 5.10
167 168 0.575859 CGATGATCTTGAGCACTGCG 59.424 55.000 0.00 0.00 0.00 5.18
168 169 1.649664 ACGATGATCTTGAGCACTGC 58.350 50.000 0.00 0.00 0.00 4.40
169 170 3.379240 CCTACGATGATCTTGAGCACTG 58.621 50.000 0.00 0.00 0.00 3.66
170 171 2.223923 GCCTACGATGATCTTGAGCACT 60.224 50.000 0.00 0.00 0.00 4.40
171 172 2.131183 GCCTACGATGATCTTGAGCAC 58.869 52.381 0.00 0.00 0.00 4.40
172 173 1.756538 TGCCTACGATGATCTTGAGCA 59.243 47.619 0.00 0.00 0.00 4.26
173 174 2.515926 TGCCTACGATGATCTTGAGC 57.484 50.000 0.00 0.00 0.00 4.26
174 175 3.240884 CGATGCCTACGATGATCTTGAG 58.759 50.000 0.00 0.00 0.00 3.02
175 176 2.029918 CCGATGCCTACGATGATCTTGA 60.030 50.000 0.00 0.00 0.00 3.02
176 177 2.029918 TCCGATGCCTACGATGATCTTG 60.030 50.000 0.00 0.00 0.00 3.02
177 178 2.029828 GTCCGATGCCTACGATGATCTT 60.030 50.000 0.00 0.00 0.00 2.40
178 179 1.542030 GTCCGATGCCTACGATGATCT 59.458 52.381 0.00 0.00 0.00 2.75
179 180 1.269723 TGTCCGATGCCTACGATGATC 59.730 52.381 0.00 0.00 0.00 2.92
180 181 1.000163 GTGTCCGATGCCTACGATGAT 60.000 52.381 0.00 0.00 0.00 2.45
181 182 0.384309 GTGTCCGATGCCTACGATGA 59.616 55.000 0.00 0.00 0.00 2.92
182 183 0.102300 TGTGTCCGATGCCTACGATG 59.898 55.000 0.00 0.00 0.00 3.84
183 184 0.821517 TTGTGTCCGATGCCTACGAT 59.178 50.000 0.00 0.00 0.00 3.73
184 185 0.108992 GTTGTGTCCGATGCCTACGA 60.109 55.000 0.00 0.00 0.00 3.43
185 186 0.389296 TGTTGTGTCCGATGCCTACG 60.389 55.000 0.00 0.00 0.00 3.51
186 187 1.076332 GTGTTGTGTCCGATGCCTAC 58.924 55.000 0.00 0.00 0.00 3.18
187 188 0.682292 TGTGTTGTGTCCGATGCCTA 59.318 50.000 0.00 0.00 0.00 3.93
188 189 0.179032 TTGTGTTGTGTCCGATGCCT 60.179 50.000 0.00 0.00 0.00 4.75
189 190 0.238289 CTTGTGTTGTGTCCGATGCC 59.762 55.000 0.00 0.00 0.00 4.40
190 191 0.238289 CCTTGTGTTGTGTCCGATGC 59.762 55.000 0.00 0.00 0.00 3.91
191 192 1.264020 CACCTTGTGTTGTGTCCGATG 59.736 52.381 0.00 0.00 0.00 3.84
192 193 1.593196 CACCTTGTGTTGTGTCCGAT 58.407 50.000 0.00 0.00 0.00 4.18
193 194 0.462937 CCACCTTGTGTTGTGTCCGA 60.463 55.000 0.00 0.00 0.00 4.55
194 195 1.444119 CCCACCTTGTGTTGTGTCCG 61.444 60.000 0.00 0.00 0.00 4.79
195 196 1.106944 CCCCACCTTGTGTTGTGTCC 61.107 60.000 0.00 0.00 0.00 4.02
196 197 0.395173 ACCCCACCTTGTGTTGTGTC 60.395 55.000 0.00 0.00 0.00 3.67
197 198 0.395173 GACCCCACCTTGTGTTGTGT 60.395 55.000 0.00 0.00 0.00 3.72
198 199 0.395036 TGACCCCACCTTGTGTTGTG 60.395 55.000 0.00 0.00 0.00 3.33
199 200 0.395173 GTGACCCCACCTTGTGTTGT 60.395 55.000 0.00 0.00 37.33 3.32
200 201 0.395036 TGTGACCCCACCTTGTGTTG 60.395 55.000 0.00 0.00 42.53 3.33
201 202 0.333312 TTGTGACCCCACCTTGTGTT 59.667 50.000 0.00 0.00 42.53 3.32
202 203 0.395173 GTTGTGACCCCACCTTGTGT 60.395 55.000 0.00 0.00 42.53 3.72
203 204 0.395036 TGTTGTGACCCCACCTTGTG 60.395 55.000 0.00 0.00 42.53 3.33
204 205 0.555769 ATGTTGTGACCCCACCTTGT 59.444 50.000 0.00 0.00 42.53 3.16
205 206 0.961019 CATGTTGTGACCCCACCTTG 59.039 55.000 0.00 0.00 42.53 3.61
206 207 0.178964 CCATGTTGTGACCCCACCTT 60.179 55.000 0.00 0.00 42.53 3.50
207 208 1.460255 CCATGTTGTGACCCCACCT 59.540 57.895 0.00 0.00 42.53 4.00
208 209 2.275380 GCCATGTTGTGACCCCACC 61.275 63.158 0.00 0.00 42.53 4.61
209 210 1.228552 AGCCATGTTGTGACCCCAC 60.229 57.895 0.00 0.00 43.46 4.61
210 211 1.074775 GAGCCATGTTGTGACCCCA 59.925 57.895 0.00 0.00 0.00 4.96
211 212 2.040544 CGAGCCATGTTGTGACCCC 61.041 63.158 0.00 0.00 0.00 4.95
212 213 0.605319 TTCGAGCCATGTTGTGACCC 60.605 55.000 0.00 0.00 0.00 4.46
213 214 0.798776 CTTCGAGCCATGTTGTGACC 59.201 55.000 0.00 0.00 0.00 4.02
214 215 0.166814 GCTTCGAGCCATGTTGTGAC 59.833 55.000 0.00 0.00 34.48 3.67
215 216 0.035317 AGCTTCGAGCCATGTTGTGA 59.965 50.000 3.66 0.00 43.77 3.58
216 217 0.877071 AAGCTTCGAGCCATGTTGTG 59.123 50.000 0.00 0.00 43.77 3.33
217 218 1.160137 GAAGCTTCGAGCCATGTTGT 58.840 50.000 11.40 0.00 43.77 3.32
218 219 1.129998 CTGAAGCTTCGAGCCATGTTG 59.870 52.381 21.11 0.00 43.77 3.33
219 220 1.271054 ACTGAAGCTTCGAGCCATGTT 60.271 47.619 21.11 1.33 43.77 2.71
220 221 0.322975 ACTGAAGCTTCGAGCCATGT 59.677 50.000 21.11 8.30 43.77 3.21
221 222 0.725686 CACTGAAGCTTCGAGCCATG 59.274 55.000 21.11 9.03 43.77 3.66
222 223 0.322975 ACACTGAAGCTTCGAGCCAT 59.677 50.000 21.11 2.22 43.77 4.40
223 224 0.601046 CACACTGAAGCTTCGAGCCA 60.601 55.000 21.11 3.31 43.77 4.75
224 225 0.601311 ACACACTGAAGCTTCGAGCC 60.601 55.000 21.11 0.00 43.77 4.70
225 226 0.510359 CACACACTGAAGCTTCGAGC 59.490 55.000 21.11 0.00 42.84 5.03
226 227 1.858091 ACACACACTGAAGCTTCGAG 58.142 50.000 21.11 19.60 0.00 4.04
227 228 2.201732 GAACACACACTGAAGCTTCGA 58.798 47.619 21.11 9.77 0.00 3.71
228 229 1.933181 TGAACACACACTGAAGCTTCG 59.067 47.619 21.11 17.22 0.00 3.79
229 230 3.561310 TCATGAACACACACTGAAGCTTC 59.439 43.478 19.89 19.89 0.00 3.86
230 231 3.544684 TCATGAACACACACTGAAGCTT 58.455 40.909 0.00 0.00 0.00 3.74
231 232 3.136763 CTCATGAACACACACTGAAGCT 58.863 45.455 0.00 0.00 0.00 3.74
232 233 2.350197 GCTCATGAACACACACTGAAGC 60.350 50.000 0.00 0.00 0.00 3.86
233 234 3.059120 CAGCTCATGAACACACACTGAAG 60.059 47.826 0.00 0.00 0.00 3.02
234 235 2.874086 CAGCTCATGAACACACACTGAA 59.126 45.455 0.00 0.00 0.00 3.02
235 236 2.486918 CAGCTCATGAACACACACTGA 58.513 47.619 0.00 0.00 0.00 3.41
236 237 1.069432 GCAGCTCATGAACACACACTG 60.069 52.381 0.00 0.00 0.00 3.66
237 238 1.202734 AGCAGCTCATGAACACACACT 60.203 47.619 0.00 0.00 0.00 3.55
238 239 1.233019 AGCAGCTCATGAACACACAC 58.767 50.000 0.00 0.00 0.00 3.82
239 240 1.971481 AAGCAGCTCATGAACACACA 58.029 45.000 0.00 0.00 0.00 3.72
240 241 3.047796 CAAAAGCAGCTCATGAACACAC 58.952 45.455 0.00 0.00 0.00 3.82
241 242 2.544277 GCAAAAGCAGCTCATGAACACA 60.544 45.455 10.78 0.00 0.00 3.72
242 243 2.056577 GCAAAAGCAGCTCATGAACAC 58.943 47.619 10.78 0.00 0.00 3.32
253 254 2.918131 GCTAACAACCGAGCAAAAGCAG 60.918 50.000 0.00 0.00 38.62 4.24
255 256 1.001815 TGCTAACAACCGAGCAAAAGC 60.002 47.619 0.00 0.00 45.47 3.51
262 263 5.698089 ACATCATGATATGCTAACAACCGAG 59.302 40.000 8.15 0.00 0.00 4.63
296 297 0.391793 CTTTGGAGAACGAGGGAGCC 60.392 60.000 0.00 0.00 0.00 4.70
389 396 3.894547 AACTGTTAGGCCCGCCACG 62.895 63.158 8.74 0.00 38.92 4.94
446 459 7.765695 AAATGATGTGTTGAACTTGACCTAT 57.234 32.000 0.00 0.00 0.00 2.57
475 488 6.039382 GGGAAACTGTTAGGCCAATAGTTATG 59.961 42.308 21.38 1.98 44.92 1.90
481 494 4.668138 AAGGGAAACTGTTAGGCCAATA 57.332 40.909 5.01 0.00 0.00 1.90
560 588 7.493971 CGTGAAGAGATAAGTTGATCTGGAATT 59.506 37.037 0.00 0.00 36.27 2.17
561 589 6.983307 CGTGAAGAGATAAGTTGATCTGGAAT 59.017 38.462 0.00 0.00 36.27 3.01
573 601 9.098355 TGTTCCAATATTTCGTGAAGAGATAAG 57.902 33.333 0.00 0.00 30.92 1.73
593 623 7.147828 TGGTCATAAAAACTTGTGAATGTTCCA 60.148 33.333 0.00 0.00 0.00 3.53
594 624 7.206687 TGGTCATAAAAACTTGTGAATGTTCC 58.793 34.615 0.00 0.00 0.00 3.62
595 625 8.641499 TTGGTCATAAAAACTTGTGAATGTTC 57.359 30.769 0.00 0.00 0.00 3.18
644 1439 1.142870 CCTCTGGGTTGTTCTTCACCA 59.857 52.381 0.00 0.00 0.00 4.17
677 1677 3.678951 GACTGAGGCAGAGGCAGGC 62.679 68.421 0.82 0.00 43.71 4.85
715 1742 5.512749 GCATCTCCATGTCAGTTCATATCCT 60.513 44.000 0.00 0.00 31.86 3.24
859 1897 1.496060 TATAGTGCACCAGGTGGGAG 58.504 55.000 21.77 0.00 41.15 4.30
897 1935 2.039070 GCTGGGATGAGGTGGAGAGAT 61.039 57.143 0.00 0.00 0.00 2.75
916 1954 0.804989 GTGGATGTAAGTGCAGGTGC 59.195 55.000 0.00 0.00 42.50 5.01
928 1966 1.134128 TGTGTGCAGTCTTGTGGATGT 60.134 47.619 0.00 0.00 0.00 3.06
976 2014 3.002791 TGAATTGGTGACGATGAGCTTC 58.997 45.455 0.00 0.00 33.59 3.86
980 2018 2.698803 TGGTGAATTGGTGACGATGAG 58.301 47.619 0.00 0.00 33.59 2.90
981 2019 2.849294 TGGTGAATTGGTGACGATGA 57.151 45.000 0.00 0.00 33.59 2.92
982 2020 2.097954 CCATGGTGAATTGGTGACGATG 59.902 50.000 2.57 0.00 33.59 3.84
983 2021 2.290896 ACCATGGTGAATTGGTGACGAT 60.291 45.455 18.99 0.00 44.49 3.73
984 2022 1.073125 ACCATGGTGAATTGGTGACGA 59.927 47.619 18.99 0.00 44.49 4.20
1213 2252 3.393970 CTCCGCCAGCCTCTCCAA 61.394 66.667 0.00 0.00 0.00 3.53
1428 2467 4.722700 AAGGCGGCCTTCATGCGT 62.723 61.111 28.12 4.71 40.17 5.24
1848 2887 3.006003 TCTGCTTGTTGTACACGTCCATA 59.994 43.478 0.00 0.00 0.00 2.74
2002 3054 5.064198 CGTCTGAGTAAACTCCAAAAACACA 59.936 40.000 7.63 0.00 42.20 3.72
2004 3056 4.034742 GCGTCTGAGTAAACTCCAAAAACA 59.965 41.667 7.63 0.00 42.20 2.83
2005 3057 4.524749 GCGTCTGAGTAAACTCCAAAAAC 58.475 43.478 7.63 0.00 42.20 2.43
2048 3104 3.634448 TGACACCGAACCAATCACATTTT 59.366 39.130 0.00 0.00 0.00 1.82
2051 3107 2.559698 TGACACCGAACCAATCACAT 57.440 45.000 0.00 0.00 0.00 3.21
2112 3168 1.019278 ACGCACGGGCATTGTTCTAG 61.019 55.000 11.77 0.00 41.24 2.43
2113 3169 0.604243 AACGCACGGGCATTGTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
2114 3170 0.604243 TAACGCACGGGCATTGTTCT 60.604 50.000 11.77 0.00 41.24 3.01
2115 3171 0.453782 GTAACGCACGGGCATTGTTC 60.454 55.000 11.77 0.00 41.24 3.18
2116 3172 1.167155 TGTAACGCACGGGCATTGTT 61.167 50.000 11.77 8.72 41.24 2.83
2117 3173 1.167155 TTGTAACGCACGGGCATTGT 61.167 50.000 11.77 0.00 41.24 2.71
2118 3174 0.727793 GTTGTAACGCACGGGCATTG 60.728 55.000 11.77 0.00 41.24 2.82
2119 3175 1.577421 GTTGTAACGCACGGGCATT 59.423 52.632 11.77 1.95 41.24 3.56
2120 3176 2.673114 CGTTGTAACGCACGGGCAT 61.673 57.895 11.77 0.00 46.06 4.40
2133 3189 9.970395 TGTATTCGAATATTTATACTCCGTTGT 57.030 29.630 20.21 0.00 0.00 3.32
2207 3263 9.479549 ACCACAATCAAATAAGGATATTGTTCT 57.520 29.630 0.00 0.00 38.39 3.01
2214 3270 9.320295 AGGAAAAACCACAATCAAATAAGGATA 57.680 29.630 0.00 0.00 42.04 2.59
2215 3271 8.206126 AGGAAAAACCACAATCAAATAAGGAT 57.794 30.769 0.00 0.00 42.04 3.24
2216 3272 7.508977 AGAGGAAAAACCACAATCAAATAAGGA 59.491 33.333 0.00 0.00 42.04 3.36
2217 3273 7.670364 AGAGGAAAAACCACAATCAAATAAGG 58.330 34.615 0.00 0.00 42.04 2.69
2218 3274 7.814587 GGAGAGGAAAAACCACAATCAAATAAG 59.185 37.037 0.00 0.00 42.04 1.73
2219 3275 7.508977 AGGAGAGGAAAAACCACAATCAAATAA 59.491 33.333 0.00 0.00 42.04 1.40
2220 3276 7.010160 AGGAGAGGAAAAACCACAATCAAATA 58.990 34.615 0.00 0.00 42.04 1.40
2221 3277 5.840693 AGGAGAGGAAAAACCACAATCAAAT 59.159 36.000 0.00 0.00 42.04 2.32
2243 3299 6.161381 ACTTGGTGTAACGATGTTACTAAGG 58.839 40.000 17.72 8.56 38.12 2.69
2244 3300 6.864685 TGACTTGGTGTAACGATGTTACTAAG 59.135 38.462 17.72 18.36 38.12 2.18
2246 3302 6.207221 TCTGACTTGGTGTAACGATGTTACTA 59.793 38.462 17.72 5.13 38.12 1.82
2259 3315 3.469008 TTCGTTGATCTGACTTGGTGT 57.531 42.857 0.00 0.00 0.00 4.16
2266 3322 3.118592 AGGGATCCTTTCGTTGATCTGAC 60.119 47.826 12.58 0.00 37.96 3.51
2277 3333 7.482169 AATTTCCTTTTGTAGGGATCCTTTC 57.518 36.000 12.58 2.09 44.86 2.62
2278 3334 7.872061 AAATTTCCTTTTGTAGGGATCCTTT 57.128 32.000 12.58 3.00 44.86 3.11
2312 3368 3.320826 TGGAGATGTTCTGTTTCTCGTCA 59.679 43.478 0.00 0.00 37.38 4.35
2345 3401 9.996554 TTTGTTAGATTTACTGTGAGATCTTCA 57.003 29.630 0.00 0.00 31.71 3.02
2416 3472 2.501723 ACAGTCCTACAGCCTTGTATGG 59.498 50.000 0.00 0.00 39.00 2.74
2429 3485 1.400846 GTTCGCATCGAGACAGTCCTA 59.599 52.381 0.00 0.00 37.14 2.94
2435 3491 2.836479 TAATCGTTCGCATCGAGACA 57.164 45.000 0.00 0.00 40.57 3.41
2445 3501 9.831054 GTATCAGAAAGTATTGTTAATCGTTCG 57.169 33.333 0.00 0.00 0.00 3.95
2456 3512 6.992063 AGCACCTTGTATCAGAAAGTATTG 57.008 37.500 0.00 0.00 0.00 1.90
2489 3545 4.002906 TCCTTCATGCTACAGTTTCGTT 57.997 40.909 0.00 0.00 0.00 3.85
2490 3546 3.678056 TCCTTCATGCTACAGTTTCGT 57.322 42.857 0.00 0.00 0.00 3.85
2491 3547 6.923508 TGTATATCCTTCATGCTACAGTTTCG 59.076 38.462 0.00 0.00 0.00 3.46
2492 3548 8.552034 GTTGTATATCCTTCATGCTACAGTTTC 58.448 37.037 0.00 0.00 0.00 2.78
2526 3582 0.940126 CAGCAACCGGATGTATGCTC 59.060 55.000 9.46 0.00 45.49 4.26
2538 3594 5.643379 TGTTTCTTAATCATCCAGCAACC 57.357 39.130 0.00 0.00 0.00 3.77
2539 3595 7.761409 TGTATGTTTCTTAATCATCCAGCAAC 58.239 34.615 0.00 0.00 0.00 4.17
2543 3599 7.988737 TGCTTGTATGTTTCTTAATCATCCAG 58.011 34.615 0.00 0.00 0.00 3.86
2546 3602 9.065871 GTGTTGCTTGTATGTTTCTTAATCATC 57.934 33.333 0.00 0.00 0.00 2.92
2632 3688 5.724370 TCCATATCCTCAACACCTAGTTTCA 59.276 40.000 0.00 0.00 38.74 2.69
2637 3693 4.039730 CAGGTCCATATCCTCAACACCTAG 59.960 50.000 0.00 0.00 31.37 3.02
2642 3698 2.126882 CCCAGGTCCATATCCTCAACA 58.873 52.381 0.00 0.00 32.37 3.33
2643 3699 1.421646 CCCCAGGTCCATATCCTCAAC 59.578 57.143 0.00 0.00 32.37 3.18
2644 3700 1.698928 CCCCCAGGTCCATATCCTCAA 60.699 57.143 0.00 0.00 32.37 3.02
2645 3701 0.104462 CCCCCAGGTCCATATCCTCA 60.104 60.000 0.00 0.00 32.37 3.86
2646 3702 0.104409 ACCCCCAGGTCCATATCCTC 60.104 60.000 0.00 0.00 46.45 3.71
2647 3703 2.045189 ACCCCCAGGTCCATATCCT 58.955 57.895 0.00 0.00 46.45 3.24
2648 3704 4.772118 ACCCCCAGGTCCATATCC 57.228 61.111 0.00 0.00 46.45 2.59
2672 3728 3.793888 GTAACCCGGCCCTCCTGG 61.794 72.222 0.00 0.00 41.98 4.45
2673 3729 2.253403 GAAGTAACCCGGCCCTCCTG 62.253 65.000 0.00 0.00 0.00 3.86
2674 3730 1.993948 GAAGTAACCCGGCCCTCCT 60.994 63.158 0.00 0.00 0.00 3.69
2675 3731 1.844544 TTGAAGTAACCCGGCCCTCC 61.845 60.000 0.00 0.00 0.00 4.30
2676 3732 0.392595 CTTGAAGTAACCCGGCCCTC 60.393 60.000 0.00 0.00 0.00 4.30
2677 3733 1.683441 CTTGAAGTAACCCGGCCCT 59.317 57.895 0.00 0.00 0.00 5.19
2678 3734 1.378119 CCTTGAAGTAACCCGGCCC 60.378 63.158 0.00 0.00 0.00 5.80
2679 3735 0.255033 ATCCTTGAAGTAACCCGGCC 59.745 55.000 0.00 0.00 0.00 6.13
2680 3736 1.065709 TGATCCTTGAAGTAACCCGGC 60.066 52.381 0.00 0.00 0.00 6.13
2681 3737 3.560636 ATGATCCTTGAAGTAACCCGG 57.439 47.619 0.00 0.00 0.00 5.73
2682 3738 4.814771 GGTAATGATCCTTGAAGTAACCCG 59.185 45.833 0.00 0.00 0.00 5.28
2683 3739 5.751586 TGGTAATGATCCTTGAAGTAACCC 58.248 41.667 0.00 0.00 0.00 4.11
2684 3740 6.650120 TCTGGTAATGATCCTTGAAGTAACC 58.350 40.000 0.00 0.00 0.00 2.85
2685 3741 7.201652 GCTTCTGGTAATGATCCTTGAAGTAAC 60.202 40.741 0.00 0.00 37.88 2.50
2686 3742 6.823689 GCTTCTGGTAATGATCCTTGAAGTAA 59.176 38.462 0.00 0.00 37.88 2.24
2687 3743 6.349300 GCTTCTGGTAATGATCCTTGAAGTA 58.651 40.000 0.00 0.00 37.88 2.24
2688 3744 5.189180 GCTTCTGGTAATGATCCTTGAAGT 58.811 41.667 0.00 0.00 37.88 3.01
2689 3745 4.578105 GGCTTCTGGTAATGATCCTTGAAG 59.422 45.833 0.00 0.00 38.22 3.02
2690 3746 4.526970 GGCTTCTGGTAATGATCCTTGAA 58.473 43.478 0.00 0.00 0.00 2.69
2691 3747 3.117888 GGGCTTCTGGTAATGATCCTTGA 60.118 47.826 0.00 0.00 0.00 3.02
2692 3748 3.217626 GGGCTTCTGGTAATGATCCTTG 58.782 50.000 0.00 0.00 0.00 3.61
2693 3749 2.158755 CGGGCTTCTGGTAATGATCCTT 60.159 50.000 0.00 0.00 0.00 3.36
2694 3750 1.417890 CGGGCTTCTGGTAATGATCCT 59.582 52.381 0.00 0.00 0.00 3.24
2695 3751 1.543429 CCGGGCTTCTGGTAATGATCC 60.543 57.143 0.00 0.00 32.23 3.36
2696 3752 1.416401 TCCGGGCTTCTGGTAATGATC 59.584 52.381 0.00 0.00 38.12 2.92
2697 3753 1.417890 CTCCGGGCTTCTGGTAATGAT 59.582 52.381 0.00 0.00 38.12 2.45
2698 3754 0.830648 CTCCGGGCTTCTGGTAATGA 59.169 55.000 0.00 0.00 38.12 2.57
2699 3755 0.815615 GCTCCGGGCTTCTGGTAATG 60.816 60.000 0.00 0.00 38.12 1.90
2700 3756 1.527370 GCTCCGGGCTTCTGGTAAT 59.473 57.895 0.00 0.00 38.12 1.89
2701 3757 2.987125 GCTCCGGGCTTCTGGTAA 59.013 61.111 0.00 0.00 38.12 2.85
2710 3766 0.249398 TCTGAAACTTAGCTCCGGGC 59.751 55.000 0.00 3.80 42.19 6.13
2711 3767 2.762535 TTCTGAAACTTAGCTCCGGG 57.237 50.000 0.00 0.00 0.00 5.73
2712 3768 5.237344 CCATTATTCTGAAACTTAGCTCCGG 59.763 44.000 0.00 0.00 0.00 5.14
2713 3769 5.237344 CCCATTATTCTGAAACTTAGCTCCG 59.763 44.000 0.00 0.00 0.00 4.63
2714 3770 5.009110 GCCCATTATTCTGAAACTTAGCTCC 59.991 44.000 0.00 0.00 0.00 4.70
2715 3771 5.009110 GGCCCATTATTCTGAAACTTAGCTC 59.991 44.000 0.00 0.00 0.00 4.09
2716 3772 4.889995 GGCCCATTATTCTGAAACTTAGCT 59.110 41.667 0.00 0.00 0.00 3.32
2717 3773 4.644685 TGGCCCATTATTCTGAAACTTAGC 59.355 41.667 0.00 0.00 0.00 3.09
2718 3774 5.300286 CCTGGCCCATTATTCTGAAACTTAG 59.700 44.000 0.00 0.00 0.00 2.18
2719 3775 5.200483 CCTGGCCCATTATTCTGAAACTTA 58.800 41.667 0.00 0.00 0.00 2.24
2720 3776 4.026052 CCTGGCCCATTATTCTGAAACTT 58.974 43.478 0.00 0.00 0.00 2.66
2721 3777 3.628257 CCCTGGCCCATTATTCTGAAACT 60.628 47.826 0.00 0.00 0.00 2.66
2722 3778 2.695147 CCCTGGCCCATTATTCTGAAAC 59.305 50.000 0.00 0.00 0.00 2.78
2723 3779 2.584965 TCCCTGGCCCATTATTCTGAAA 59.415 45.455 0.00 0.00 0.00 2.69
2724 3780 2.213310 TCCCTGGCCCATTATTCTGAA 58.787 47.619 0.00 0.00 0.00 3.02
2725 3781 1.905839 TCCCTGGCCCATTATTCTGA 58.094 50.000 0.00 0.00 0.00 3.27
2726 3782 2.522185 CATCCCTGGCCCATTATTCTG 58.478 52.381 0.00 0.00 0.00 3.02
2727 3783 1.430464 CCATCCCTGGCCCATTATTCT 59.570 52.381 0.00 0.00 35.23 2.40
2728 3784 1.550869 CCCATCCCTGGCCCATTATTC 60.551 57.143 0.00 0.00 41.64 1.75
2729 3785 0.488668 CCCATCCCTGGCCCATTATT 59.511 55.000 0.00 0.00 41.64 1.40
2730 3786 2.097978 GCCCATCCCTGGCCCATTAT 62.098 60.000 0.00 0.00 43.33 1.28
2731 3787 2.777960 GCCCATCCCTGGCCCATTA 61.778 63.158 0.00 0.00 43.33 1.90
2732 3788 4.162009 GCCCATCCCTGGCCCATT 62.162 66.667 0.00 0.00 43.33 3.16
2738 3794 2.750657 GGTCTCAGCCCATCCCTGG 61.751 68.421 0.00 0.00 42.73 4.45
2739 3795 2.914289 GGTCTCAGCCCATCCCTG 59.086 66.667 0.00 0.00 0.00 4.45
2746 3802 1.674057 CATATCCGGGTCTCAGCCC 59.326 63.158 0.00 0.00 45.21 5.19
2747 3803 1.674057 CCATATCCGGGTCTCAGCC 59.326 63.158 0.00 0.00 0.00 4.85
2748 3804 1.004440 GCCATATCCGGGTCTCAGC 60.004 63.158 0.00 0.00 0.00 4.26
2749 3805 1.051812 AAGCCATATCCGGGTCTCAG 58.948 55.000 0.00 0.00 35.11 3.35
2750 3806 2.391926 TAAGCCATATCCGGGTCTCA 57.608 50.000 0.00 0.00 35.11 3.27
2751 3807 3.665190 CTTTAAGCCATATCCGGGTCTC 58.335 50.000 0.00 0.00 35.11 3.36
2752 3808 2.224548 GCTTTAAGCCATATCCGGGTCT 60.225 50.000 5.52 0.00 35.11 3.85
2753 3809 2.152016 GCTTTAAGCCATATCCGGGTC 58.848 52.381 5.52 0.00 35.11 4.46
2754 3810 2.271944 GCTTTAAGCCATATCCGGGT 57.728 50.000 5.52 0.00 38.81 5.28
2765 3821 4.632688 TGATTGTAACTACGGGCTTTAAGC 59.367 41.667 8.66 8.66 41.46 3.09
2766 3822 6.920569 ATGATTGTAACTACGGGCTTTAAG 57.079 37.500 0.00 0.00 0.00 1.85
2767 3823 6.655848 ACAATGATTGTAACTACGGGCTTTAA 59.344 34.615 9.41 0.00 43.27 1.52
2768 3824 6.174760 ACAATGATTGTAACTACGGGCTTTA 58.825 36.000 9.41 0.00 43.27 1.85
2769 3825 5.007682 ACAATGATTGTAACTACGGGCTTT 58.992 37.500 9.41 0.00 43.27 3.51
2770 3826 4.585879 ACAATGATTGTAACTACGGGCTT 58.414 39.130 9.41 0.00 43.27 4.35
2771 3827 4.216411 ACAATGATTGTAACTACGGGCT 57.784 40.909 9.41 0.00 43.27 5.19
2772 3828 4.957759 AACAATGATTGTAACTACGGGC 57.042 40.909 11.70 0.00 44.59 6.13
2773 3829 8.882415 ACTATAACAATGATTGTAACTACGGG 57.118 34.615 11.70 0.48 44.59 5.28
2790 3846 8.680903 GCCTTACACTACAAGTCTACTATAACA 58.319 37.037 0.00 0.00 0.00 2.41
2791 3847 8.680903 TGCCTTACACTACAAGTCTACTATAAC 58.319 37.037 0.00 0.00 0.00 1.89
2792 3848 8.812513 TGCCTTACACTACAAGTCTACTATAA 57.187 34.615 0.00 0.00 0.00 0.98
2793 3849 8.812513 TTGCCTTACACTACAAGTCTACTATA 57.187 34.615 0.00 0.00 0.00 1.31
2794 3850 7.713734 TTGCCTTACACTACAAGTCTACTAT 57.286 36.000 0.00 0.00 0.00 2.12
2795 3851 7.154435 CTTGCCTTACACTACAAGTCTACTA 57.846 40.000 0.00 0.00 35.81 1.82
2796 3852 6.026947 CTTGCCTTACACTACAAGTCTACT 57.973 41.667 0.00 0.00 35.81 2.57
2802 3858 7.435068 AACAATACTTGCCTTACACTACAAG 57.565 36.000 0.00 0.00 43.99 3.16
2803 3859 7.811117 AAACAATACTTGCCTTACACTACAA 57.189 32.000 0.00 0.00 0.00 2.41
2804 3860 7.811117 AAAACAATACTTGCCTTACACTACA 57.189 32.000 0.00 0.00 0.00 2.74
2805 3861 9.211485 TCTAAAACAATACTTGCCTTACACTAC 57.789 33.333 0.00 0.00 0.00 2.73
2806 3862 9.431887 CTCTAAAACAATACTTGCCTTACACTA 57.568 33.333 0.00 0.00 0.00 2.74
2807 3863 7.094762 GCTCTAAAACAATACTTGCCTTACACT 60.095 37.037 0.00 0.00 0.00 3.55
2808 3864 7.021790 GCTCTAAAACAATACTTGCCTTACAC 58.978 38.462 0.00 0.00 0.00 2.90
2809 3865 6.150474 GGCTCTAAAACAATACTTGCCTTACA 59.850 38.462 0.00 0.00 35.44 2.41
2810 3866 6.404403 GGGCTCTAAAACAATACTTGCCTTAC 60.404 42.308 0.00 0.00 38.07 2.34
2811 3867 5.650703 GGGCTCTAAAACAATACTTGCCTTA 59.349 40.000 0.00 0.00 38.07 2.69
2812 3868 4.462834 GGGCTCTAAAACAATACTTGCCTT 59.537 41.667 0.00 0.00 38.07 4.35
2813 3869 4.017126 GGGCTCTAAAACAATACTTGCCT 58.983 43.478 0.00 0.00 38.07 4.75
2814 3870 3.181500 CGGGCTCTAAAACAATACTTGCC 60.181 47.826 0.00 0.00 37.34 4.52
2815 3871 3.687698 TCGGGCTCTAAAACAATACTTGC 59.312 43.478 0.00 0.00 0.00 4.01
2816 3872 4.201822 GCTCGGGCTCTAAAACAATACTTG 60.202 45.833 0.00 0.00 35.22 3.16
2817 3873 3.939592 GCTCGGGCTCTAAAACAATACTT 59.060 43.478 0.00 0.00 35.22 2.24
2818 3874 3.532542 GCTCGGGCTCTAAAACAATACT 58.467 45.455 0.00 0.00 35.22 2.12
2819 3875 2.612672 GGCTCGGGCTCTAAAACAATAC 59.387 50.000 7.48 0.00 38.73 1.89
2820 3876 2.740580 CGGCTCGGGCTCTAAAACAATA 60.741 50.000 7.48 0.00 38.73 1.90
2821 3877 1.751437 GGCTCGGGCTCTAAAACAAT 58.249 50.000 7.48 0.00 38.73 2.71
2822 3878 0.672401 CGGCTCGGGCTCTAAAACAA 60.672 55.000 7.48 0.00 38.73 2.83
2823 3879 1.079405 CGGCTCGGGCTCTAAAACA 60.079 57.895 7.48 0.00 38.73 2.83
2824 3880 1.814169 CCGGCTCGGGCTCTAAAAC 60.814 63.158 7.48 0.00 44.15 2.43
2825 3881 2.582436 CCGGCTCGGGCTCTAAAA 59.418 61.111 7.48 0.00 44.15 1.52
2834 3890 4.462118 CTCATAAGAGTGTCCGGCTCGG 62.462 59.091 0.00 7.24 41.72 4.63
2835 3891 0.738975 TCATAAGAGTGTCCGGCTCG 59.261 55.000 0.00 0.00 37.99 5.03
2836 3892 1.537135 GCTCATAAGAGTGTCCGGCTC 60.537 57.143 0.00 0.00 44.00 4.70
2837 3893 0.461961 GCTCATAAGAGTGTCCGGCT 59.538 55.000 0.00 0.00 44.00 5.52
2838 3894 0.530870 GGCTCATAAGAGTGTCCGGC 60.531 60.000 0.00 0.00 44.00 6.13
2839 3895 0.249073 CGGCTCATAAGAGTGTCCGG 60.249 60.000 0.00 0.00 44.00 5.14
2840 3896 0.249073 CCGGCTCATAAGAGTGTCCG 60.249 60.000 5.77 5.77 44.00 4.79
2841 3897 0.530870 GCCGGCTCATAAGAGTGTCC 60.531 60.000 22.15 0.00 44.00 4.02
2842 3898 0.530870 GGCCGGCTCATAAGAGTGTC 60.531 60.000 28.56 0.00 44.00 3.67
2843 3899 1.522569 GGCCGGCTCATAAGAGTGT 59.477 57.895 28.56 0.00 44.00 3.55
2844 3900 1.592669 CGGCCGGCTCATAAGAGTG 60.593 63.158 28.56 0.00 44.00 3.51
2845 3901 2.797278 CCGGCCGGCTCATAAGAGT 61.797 63.158 34.96 0.00 44.00 3.24
2846 3902 2.029666 CCGGCCGGCTCATAAGAG 59.970 66.667 34.96 3.26 44.96 2.85
2847 3903 3.546543 CCCGGCCGGCTCATAAGA 61.547 66.667 39.46 0.00 0.00 2.10
2848 3904 3.546543 TCCCGGCCGGCTCATAAG 61.547 66.667 39.46 22.98 0.00 1.73
2849 3905 3.857038 GTCCCGGCCGGCTCATAA 61.857 66.667 39.46 15.60 0.00 1.90
2850 3906 4.853142 AGTCCCGGCCGGCTCATA 62.853 66.667 39.46 17.51 0.00 2.15
2854 3910 4.772231 TTAGAGTCCCGGCCGGCT 62.772 66.667 39.46 30.53 0.00 5.52
2855 3911 4.222847 CTTAGAGTCCCGGCCGGC 62.223 72.222 39.46 26.05 0.00 6.13
2856 3912 3.537874 CCTTAGAGTCCCGGCCGG 61.538 72.222 37.99 37.99 0.00 6.13
2857 3913 3.537874 CCCTTAGAGTCCCGGCCG 61.538 72.222 21.04 21.04 0.00 6.13
2858 3914 3.862991 GCCCTTAGAGTCCCGGCC 61.863 72.222 0.00 0.00 33.30 6.13
2859 3915 2.764547 AGCCCTTAGAGTCCCGGC 60.765 66.667 0.00 0.00 40.03 6.13
2860 3916 3.095347 GCAGCCCTTAGAGTCCCGG 62.095 68.421 0.00 0.00 0.00 5.73
2861 3917 2.060980 AGCAGCCCTTAGAGTCCCG 61.061 63.158 0.00 0.00 0.00 5.14
2862 3918 1.524482 CAGCAGCCCTTAGAGTCCC 59.476 63.158 0.00 0.00 0.00 4.46
2863 3919 1.524482 CCAGCAGCCCTTAGAGTCC 59.476 63.158 0.00 0.00 0.00 3.85
2864 3920 1.524482 CCCAGCAGCCCTTAGAGTC 59.476 63.158 0.00 0.00 0.00 3.36
2865 3921 2.674220 GCCCAGCAGCCCTTAGAGT 61.674 63.158 0.00 0.00 0.00 3.24
2866 3922 2.191641 GCCCAGCAGCCCTTAGAG 59.808 66.667 0.00 0.00 0.00 2.43
2867 3923 3.785859 CGCCCAGCAGCCCTTAGA 61.786 66.667 0.00 0.00 0.00 2.10
2868 3924 4.101448 ACGCCCAGCAGCCCTTAG 62.101 66.667 0.00 0.00 0.00 2.18
2869 3925 4.096003 GACGCCCAGCAGCCCTTA 62.096 66.667 0.00 0.00 0.00 2.69
2882 3938 3.368531 CCTTTATATAGGGAGGCTGACGC 60.369 52.174 0.00 0.00 0.00 5.19
2883 3939 4.457834 CCTTTATATAGGGAGGCTGACG 57.542 50.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.