AutoCloner

Multiple sequence alignment - TraesCS1D01G097700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G097700	chr1D	100.000	3020	0	0	1	3020	84616499	84613480	0.000000e+00	5578.0
1	TraesCS1D01G097700	chr1D	90.585	2018	131	22	609	2613	84891381	84893352	0.000000e+00	2619.0
2	TraesCS1D01G097700	chr1D	93.115	1438	54	25	708	2119	84728761	84727343	0.000000e+00	2065.0
3	TraesCS1D01G097700	chr1D	88.708	859	61	18	2168	3009	84726891	84726052	0.000000e+00	1016.0
4	TraesCS1D01G097700	chr1D	88.815	599	45	15	1	586	84730506	84729917	0.000000e+00	715.0
5	TraesCS1D01G097700	chr1D	87.947	531	33	12	2384	2899	84571630	84571116	5.570000e-167	597.0
6	TraesCS1D01G097700	chr1D	94.979	239	8	4	344	580	84890282	84890518	3.680000e-99	372.0
7	TraesCS1D01G097700	chr1D	80.694	461	61	11	2186	2628	12329884	12330334	1.740000e-87	333.0
8	TraesCS1D01G097700	chr1D	83.043	230	28	3	1866	2092	84573493	84573272	6.600000e-47	198.0
9	TraesCS1D01G097700	chr1D	89.873	79	8	0	2059	2137	84892843	84892921	5.330000e-18	102.0
10	TraesCS1D01G097700	chr1D	95.652	46	2	0	2123	2168	84727401	84727356	1.160000e-09	75.0
11	TraesCS1D01G097700	chr1D	82.432	74	3	2	605	678	84728831	84728768	4.210000e-04	56.5
12	TraesCS1D01G097700	chr1D	100.000	28	0	0	277	304	84730157	84730130	5.000000e-03	52.8
13	TraesCS1D01G097700	chr1B	91.091	2054	113	28	344	2343	137612916	137614953	0.000000e+00	2715.0
14	TraesCS1D01G097700	chr1B	88.883	2015	133	38	708	2640	137182441	137180436	0.000000e+00	2396.0
15	TraesCS1D01G097700	chr1B	92.313	1379	74	13	743	2106	137450880	137449519	0.000000e+00	1930.0
16	TraesCS1D01G097700	chr1B	88.333	540	42	13	2477	3009	137448983	137448458	1.980000e-176	628.0
17	TraesCS1D01G097700	chr1B	88.403	526	35	15	1	512	137419699	137419186	7.160000e-171	610.0
18	TraesCS1D01G097700	chr1B	86.533	349	26	8	2527	2872	137155185	137154855	6.150000e-97	364.0
19	TraesCS1D01G097700	chr1B	88.426	216	9	6	501	706	137190288	137190079	2.330000e-61	246.0
20	TraesCS1D01G097700	chr1B	86.979	192	14	6	2298	2478	137449418	137449227	3.950000e-49	206.0
21	TraesCS1D01G097700	chr1B	89.032	155	17	0	2112	2266	137449575	137449421	3.070000e-45	193.0
22	TraesCS1D01G097700	chr1B	92.593	54	4	0	2956	3009	137180397	137180344	8.980000e-11	78.7
23	TraesCS1D01G097700	chr1B	95.833	48	2	0	2121	2168	137614638	137614685	8.980000e-11	78.7
24	TraesCS1D01G097700	chr1A	88.598	1719	109	40	589	2268	78551510	78549840	0.000000e+00	2008.0
25	TraesCS1D01G097700	chr1A	91.810	1392	65	18	480	1868	79110109	79111454	0.000000e+00	1893.0
26	TraesCS1D01G097700	chr1A	88.051	862	66	14	2168	3009	78957285	78956441	0.000000e+00	987.0
27	TraesCS1D01G097700	chr1A	89.535	688	51	13	1433	2119	78958402	78957735	0.000000e+00	852.0
28	TraesCS1D01G097700	chr1A	85.914	788	68	24	2237	3005	78549470	78548707	0.000000e+00	800.0
29	TraesCS1D01G097700	chr1A	85.660	788	46	38	432	1171	78959814	78959046	0.000000e+00	767.0
30	TraesCS1D01G097700	chr1A	89.404	604	41	16	1	591	78557400	78556807	0.000000e+00	739.0
31	TraesCS1D01G097700	chr1A	84.478	728	83	9	1868	2579	79116295	79117008	0.000000e+00	691.0
32	TraesCS1D01G097700	chr1A	86.656	637	44	18	2384	3005	78340041	78339431	0.000000e+00	667.0
33	TraesCS1D01G097700	chr1A	79.062	597	92	12	2165	2734	14162655	14163245	2.200000e-101	379.0
34	TraesCS1D01G097700	chr1A	95.973	149	5	1	344	492	79109513	79109660	1.080000e-59	241.0
35	TraesCS1D01G097700	chr1A	94.915	59	3	0	2079	2137	79116537	79116595	3.210000e-15	93.5
36	TraesCS1D01G097700	chr1A	91.304	46	4	0	2123	2168	78549773	78549728	2.510000e-06	63.9
37	TraesCS1D01G097700	chr2A	85.065	770	90	12	858	1626	611763836	611764581	0.000000e+00	761.0
38	TraesCS1D01G097700	chrUn	95.361	388	18	0	1528	1915	480029644	480030031	4.280000e-173	617.0
39	TraesCS1D01G097700	chr2D	84.946	558	64	10	846	1402	470200444	470200982	5.690000e-152	547.0
40	TraesCS1D01G097700	chr7B	88.095	84	9	1	183	266	500779892	500779810	6.890000e-17	99.0
41	TraesCS1D01G097700	chr6D	82.418	91	15	1	183	272	51065609	51065699	8.980000e-11	78.7
42	TraesCS1D01G097700	chr5A	85.938	64	7	2	186	248	559586224	559586162	1.940000e-07	67.6
43	TraesCS1D01G097700	chr4B	97.222	36	1	0	306	341	155089386	155089351	9.040000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G097700	chr1D	84613480	84616499	3019	True	5578.000000	5578	100.000000	1	3020	1	chr1D.!!$R1	3019
1	TraesCS1D01G097700	chr1D	84890282	84893352	3070	False	1031.000000	2619	91.812333	344	2613	3	chr1D.!!$F2	2269
2	TraesCS1D01G097700	chr1D	84726052	84730506	4454	True	663.383333	2065	91.453667	1	3009	6	chr1D.!!$R3	3008
3	TraesCS1D01G097700	chr1D	84571116	84573493	2377	True	397.500000	597	85.495000	1866	2899	2	chr1D.!!$R2	1033
4	TraesCS1D01G097700	chr1B	137612916	137614953	2037	False	1396.850000	2715	93.462000	344	2343	2	chr1B.!!$F1	1999
5	TraesCS1D01G097700	chr1B	137180344	137182441	2097	True	1237.350000	2396	90.738000	708	3009	2	chr1B.!!$R4	2301
6	TraesCS1D01G097700	chr1B	137448458	137450880	2422	True	739.250000	1930	89.164250	743	3009	4	chr1B.!!$R5	2266
7	TraesCS1D01G097700	chr1B	137419186	137419699	513	True	610.000000	610	88.403000	1	512	1	chr1B.!!$R3	511
8	TraesCS1D01G097700	chr1A	79109513	79111454	1941	False	1067.000000	1893	93.891500	344	1868	2	chr1A.!!$F2	1524
9	TraesCS1D01G097700	chr1A	78548707	78551510	2803	True	957.300000	2008	88.605333	589	3005	3	chr1A.!!$R3	2416
10	TraesCS1D01G097700	chr1A	78956441	78959814	3373	True	868.666667	987	87.748667	432	3009	3	chr1A.!!$R4	2577
11	TraesCS1D01G097700	chr1A	78556807	78557400	593	True	739.000000	739	89.404000	1	591	1	chr1A.!!$R2	590
12	TraesCS1D01G097700	chr1A	78339431	78340041	610	True	667.000000	667	86.656000	2384	3005	1	chr1A.!!$R1	621
13	TraesCS1D01G097700	chr1A	79116295	79117008	713	False	392.250000	691	89.696500	1868	2579	2	chr1A.!!$F3	711
14	TraesCS1D01G097700	chr1A	14162655	14163245	590	False	379.000000	379	79.062000	2165	2734	1	chr1A.!!$F1	569
15	TraesCS1D01G097700	chr2A	611763836	611764581	745	False	761.000000	761	85.065000	858	1626	1	chr2A.!!$F1	768
16	TraesCS1D01G097700	chr2D	470200444	470200982	538	False	547.000000	547	84.946000	846	1402	1	chr2D.!!$F1	556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
277	279	1.408969	ACCCGTTTTCAATGTTGGCT	58.591	45.0	0.0	0.0	0.00	4.75	F
1821	4216	1.884235	AACAGGAGTTCTTCGGCAAG	58.116	50.0	0.0	0.0	30.46	4.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1988	4383	0.034059	AACAAGACGGCTGAGGTCTG	59.966	55.000	0.0	0.0	43.66	3.51	R
2744	8194	1.610038	CTGCTGCACTGGATGAACAAA	59.390	47.619	0.0	0.0	0.00	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	3.877508	ACAAACCTTCTCTACAGTTGCAC	59.122	43.478	0.00	0.00	0.00	4.57
200	202	3.446570	GGTGATGGCCTGCTGCAC	61.447	66.667	3.32	4.92	43.89	4.57
272	274	3.151554	GGTCCTTACCCGTTTTCAATGT	58.848	45.455	0.00	0.00	40.21	2.71
273	275	3.570975	GGTCCTTACCCGTTTTCAATGTT	59.429	43.478	0.00	0.00	40.21	2.71
274	276	4.542735	GTCCTTACCCGTTTTCAATGTTG	58.457	43.478	0.00	0.00	0.00	3.33
275	277	3.570550	TCCTTACCCGTTTTCAATGTTGG	59.429	43.478	0.00	0.00	0.00	3.77
276	278	3.313690	CTTACCCGTTTTCAATGTTGGC	58.686	45.455	0.00	0.00	0.00	4.52
277	279	1.408969	ACCCGTTTTCAATGTTGGCT	58.591	45.000	0.00	0.00	0.00	4.75
278	280	2.588620	ACCCGTTTTCAATGTTGGCTA	58.411	42.857	0.00	0.00	0.00	3.93
279	281	2.959707	ACCCGTTTTCAATGTTGGCTAA	59.040	40.909	0.00	0.00	0.00	3.09
280	282	3.005367	ACCCGTTTTCAATGTTGGCTAAG	59.995	43.478	0.00	0.00	0.00	2.18
281	283	3.005367	CCCGTTTTCAATGTTGGCTAAGT	59.995	43.478	0.00	0.00	0.00	2.24
284	286	5.799936	CCGTTTTCAATGTTGGCTAAGTATG	59.200	40.000	0.00	0.00	0.00	2.39
285	287	5.799936	CGTTTTCAATGTTGGCTAAGTATGG	59.200	40.000	0.00	0.00	0.00	2.74
286	288	6.348950	CGTTTTCAATGTTGGCTAAGTATGGA	60.349	38.462	0.00	0.00	0.00	3.41
287	289	7.547227	GTTTTCAATGTTGGCTAAGTATGGAT	58.453	34.615	0.00	0.00	0.00	3.41
289	291	8.815565	TTTCAATGTTGGCTAAGTATGGATAA	57.184	30.769	0.00	0.00	0.00	1.75
290	292	8.995027	TTCAATGTTGGCTAAGTATGGATAAT	57.005	30.769	0.00	0.00	0.00	1.28
291	293	8.394971	TCAATGTTGGCTAAGTATGGATAATG	57.605	34.615	0.00	0.00	0.00	1.90
292	294	7.998383	TCAATGTTGGCTAAGTATGGATAATGT	59.002	33.333	0.00	0.00	0.00	2.71
293	295	8.632679	CAATGTTGGCTAAGTATGGATAATGTT	58.367	33.333	0.00	0.00	0.00	2.71
294	296	7.566760	TGTTGGCTAAGTATGGATAATGTTG	57.433	36.000	0.00	0.00	0.00	3.33
295	297	6.545666	TGTTGGCTAAGTATGGATAATGTTGG	59.454	38.462	0.00	0.00	0.00	3.77
296	298	5.070001	TGGCTAAGTATGGATAATGTTGGC	58.930	41.667	0.00	0.00	0.00	4.52
298	300	6.043822	TGGCTAAGTATGGATAATGTTGGCTA	59.956	38.462	0.00	0.00	0.00	3.93
299	301	6.940298	GGCTAAGTATGGATAATGTTGGCTAA	59.060	38.462	0.00	0.00	0.00	3.09
300	302	7.119846	GGCTAAGTATGGATAATGTTGGCTAAG	59.880	40.741	0.00	0.00	0.00	2.18
302	304	7.807977	AAGTATGGATAATGTTGGCTAAGTG	57.192	36.000	0.00	0.00	0.00	3.16
303	305	7.136822	AGTATGGATAATGTTGGCTAAGTGA	57.863	36.000	0.00	0.00	0.00	3.41
304	306	6.992715	AGTATGGATAATGTTGGCTAAGTGAC	59.007	38.462	0.00	0.00	0.00	3.67
685	2595	9.801873	GAAATGTTGGTGTATTATGCAAAGTAT	57.198	29.630	0.00	0.00	0.00	2.12
798	2729	2.183679	AGCTTCTAGTAACAGCCTGCT	58.816	47.619	0.00	0.00	33.73	4.24
800	2731	2.093973	GCTTCTAGTAACAGCCTGCTGA	60.094	50.000	24.88	1.09	46.30	4.26
801	2732	3.779759	CTTCTAGTAACAGCCTGCTGAG	58.220	50.000	24.88	11.61	46.30	3.35
922	2931	3.195698	GCCTGGCAACGTCGATCC	61.196	66.667	15.17	0.00	42.51	3.36
1253	3598	4.056125	CGTCTCACGAGCCCTGCA	62.056	66.667	0.00	0.00	46.05	4.41
1491	3886	3.296709	GAAGGCGCGAGAGTGGGAA	62.297	63.158	12.10	0.00	43.14	3.97
1821	4216	1.884235	AACAGGAGTTCTTCGGCAAG	58.116	50.000	0.00	0.00	30.46	4.01
1988	4383	2.586357	GGTGGATCGAGAAGCGGC	60.586	66.667	0.00	0.00	41.33	6.53
2157	4651	5.981088	TGATCAGCAATGTAATGGTTGTT	57.019	34.783	0.00	0.00	29.52	2.83
2183	5595	5.822519	TCACTTATGCCATATTTGACACTCC	59.177	40.000	0.00	0.00	0.00	3.85
2194	5606	7.857389	CCATATTTGACACTCCAAATCAATACG	59.143	37.037	5.29	0.00	43.40	3.06
2303	6305	7.118245	TGCAGTTCTACATGTAGATTTTGTGAG	59.882	37.037	31.03	17.46	41.37	3.51
2353	7276	2.076100	TCTTTCGACATTGCTTCGCAT	58.924	42.857	0.00	0.00	38.76	4.73
2368	7291	0.037512	CGCATAGATCTCTGCCTGGG	60.038	60.000	23.06	8.88	34.89	4.45
2549	7978	3.119743	TGTTGCTCTGAAGTGCATATTGC	60.120	43.478	7.80	0.00	42.97	3.56
2734	8184	4.813750	AAATGCTTAATCAGGCTTTGCT	57.186	36.364	0.00	0.00	0.00	3.91
2735	8185	4.813750	AATGCTTAATCAGGCTTTGCTT	57.186	36.364	0.00	0.00	0.00	3.91
2736	8186	5.920193	AATGCTTAATCAGGCTTTGCTTA	57.080	34.783	0.00	0.00	0.00	3.09
2737	8187	5.920193	ATGCTTAATCAGGCTTTGCTTAA	57.080	34.783	0.00	0.00	0.00	1.85
2738	8188	5.059404	TGCTTAATCAGGCTTTGCTTAAC	57.941	39.130	0.00	0.00	0.00	2.01
2740	8190	4.082245	GCTTAATCAGGCTTTGCTTAACCA	60.082	41.667	0.00	0.00	0.00	3.67
2743	8193	3.222173	TCAGGCTTTGCTTAACCAGAA	57.778	42.857	0.00	0.00	0.00	3.02
2744	8194	3.766545	TCAGGCTTTGCTTAACCAGAAT	58.233	40.909	0.00	0.00	0.00	2.40
2767	8220	1.610522	GTTCATCCAGTGCAGCAGTTT	59.389	47.619	0.00	0.00	0.00	2.66
3006	8460	8.447053	GGAAGTATCAAAAGAACTGAAAGCTAG	58.553	37.037	0.00	0.00	37.60	3.42

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
166	168	5.296283	CCATCACCAAGCTTGAAATAGAGAG	59.704	44.000	28.05	9.83	0.00	3.20
267	269	8.169977	ACATTATCCATACTTAGCCAACATTG	57.830	34.615	0.00	0.00	0.00	2.82
272	274	5.534654	GCCAACATTATCCATACTTAGCCAA	59.465	40.000	0.00	0.00	0.00	4.52
273	275	5.070001	GCCAACATTATCCATACTTAGCCA	58.930	41.667	0.00	0.00	0.00	4.75
274	276	5.316987	AGCCAACATTATCCATACTTAGCC	58.683	41.667	0.00	0.00	0.00	3.93
275	277	7.661847	ACTTAGCCAACATTATCCATACTTAGC	59.338	37.037	0.00	0.00	0.00	3.09
276	278	8.993121	CACTTAGCCAACATTATCCATACTTAG	58.007	37.037	0.00	0.00	0.00	2.18
277	279	8.710239	TCACTTAGCCAACATTATCCATACTTA	58.290	33.333	0.00	0.00	0.00	2.24
278	280	7.499232	GTCACTTAGCCAACATTATCCATACTT	59.501	37.037	0.00	0.00	0.00	2.24
279	281	6.992715	GTCACTTAGCCAACATTATCCATACT	59.007	38.462	0.00	0.00	0.00	2.12
280	282	6.765989	TGTCACTTAGCCAACATTATCCATAC	59.234	38.462	0.00	0.00	0.00	2.39
281	283	6.765989	GTGTCACTTAGCCAACATTATCCATA	59.234	38.462	0.00	0.00	0.00	2.74
284	286	5.065218	CAGTGTCACTTAGCCAACATTATCC	59.935	44.000	1.67	0.00	0.00	2.59
285	287	5.447818	GCAGTGTCACTTAGCCAACATTATC	60.448	44.000	1.67	0.00	0.00	1.75
286	288	4.396166	GCAGTGTCACTTAGCCAACATTAT	59.604	41.667	1.67	0.00	0.00	1.28
287	289	3.751175	GCAGTGTCACTTAGCCAACATTA	59.249	43.478	1.67	0.00	0.00	1.90
289	291	2.154462	GCAGTGTCACTTAGCCAACAT	58.846	47.619	1.67	0.00	0.00	2.71
290	292	1.593196	GCAGTGTCACTTAGCCAACA	58.407	50.000	1.67	0.00	0.00	3.33
291	293	0.512952	CGCAGTGTCACTTAGCCAAC	59.487	55.000	1.67	0.00	0.00	3.77
292	294	0.602638	CCGCAGTGTCACTTAGCCAA	60.603	55.000	1.67	0.00	0.00	4.52
293	295	1.005037	CCGCAGTGTCACTTAGCCA	60.005	57.895	1.67	0.00	0.00	4.75
294	296	0.245539	TACCGCAGTGTCACTTAGCC	59.754	55.000	1.67	0.00	0.00	3.93
295	297	2.295253	ATACCGCAGTGTCACTTAGC	57.705	50.000	1.67	3.92	0.00	3.09
296	298	6.715344	TTTAAATACCGCAGTGTCACTTAG	57.285	37.500	1.67	0.00	0.00	2.18
298	300	6.038936	AGTTTTTAAATACCGCAGTGTCACTT	59.961	34.615	1.67	0.00	0.00	3.16
299	301	5.529800	AGTTTTTAAATACCGCAGTGTCACT	59.470	36.000	0.00	0.00	0.00	3.41
300	302	5.754778	AGTTTTTAAATACCGCAGTGTCAC	58.245	37.500	5.31	0.00	0.00	3.67
302	304	6.793680	GTGTAGTTTTTAAATACCGCAGTGTC	59.206	38.462	5.31	0.00	0.00	3.67
303	305	6.484308	AGTGTAGTTTTTAAATACCGCAGTGT	59.516	34.615	5.31	0.00	0.00	3.55
304	306	6.795114	CAGTGTAGTTTTTAAATACCGCAGTG	59.205	38.462	15.98	15.98	0.00	3.66
1253	3598	2.600769	AGCACTCCCGTTCGAGGT	60.601	61.111	0.00	0.00	33.93	3.85
1548	3943	2.604686	AGGCTCTCCGGCAAGTGA	60.605	61.111	0.00	0.00	41.46	3.41
1812	4207	1.743252	GCTCTCCCACTTGCCGAAG	60.743	63.158	0.00	0.00	35.07	3.79
1988	4383	0.034059	AACAAGACGGCTGAGGTCTG	59.966	55.000	0.00	0.00	43.66	3.51
2303	6305	8.893727	AGATATGTTGTGCCTTATTTTACACTC	58.106	33.333	0.00	0.00	34.14	3.51
2313	6547	8.826710	CGAAAGATAAAGATATGTTGTGCCTTA	58.173	33.333	0.00	0.00	0.00	2.69
2353	7276	0.185175	TACGCCCAGGCAGAGATCTA	59.815	55.000	9.78	0.00	42.06	1.98
2368	7291	1.809684	AAACCCAGCTTCTTCTACGC	58.190	50.000	0.00	0.00	0.00	4.42
2549	7978	4.870123	TGGTTTGATCAATGGACAAAGG	57.130	40.909	9.40	0.00	34.86	3.11
2734	8184	6.516527	GCACTGGATGAACAAATTCTGGTTAA	60.517	38.462	0.00	0.00	35.69	2.01
2735	8185	5.048083	GCACTGGATGAACAAATTCTGGTTA	60.048	40.000	0.00	0.00	35.69	2.85
2736	8186	4.262164	GCACTGGATGAACAAATTCTGGTT	60.262	41.667	0.00	0.00	35.69	3.67
2737	8187	3.256631	GCACTGGATGAACAAATTCTGGT	59.743	43.478	0.00	0.00	35.69	4.00
2738	8188	3.256383	TGCACTGGATGAACAAATTCTGG	59.744	43.478	0.00	0.00	35.69	3.86
2740	8190	3.057033	GCTGCACTGGATGAACAAATTCT	60.057	43.478	0.00	0.00	35.69	2.40
2743	8193	2.230508	CTGCTGCACTGGATGAACAAAT	59.769	45.455	0.00	0.00	0.00	2.32
2744	8194	1.610038	CTGCTGCACTGGATGAACAAA	59.390	47.619	0.00	0.00	0.00	2.83
2767	8220	3.376859	CACTAACAAGCGCCCATCAATAA	59.623	43.478	2.29	0.00	0.00	1.40
2834	8288	8.987890	TCAGAATTTAAGCAACTTTAAAATGCC	58.012	29.630	17.49	5.39	40.93	4.40
2884	8338	7.978099	ATAGCAGAATAATTGACCCCTTTTT	57.022	32.000	0.00	0.00	0.00	1.94
2889	8343	8.352942	CAAACTTATAGCAGAATAATTGACCCC	58.647	37.037	0.00	0.00	0.00	4.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.