Multiple sequence alignment - TraesCS1D01G096200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G096200 chr1D 100.000 3607 0 0 1 3607 81365951 81369557 0.000000e+00 6661
1 TraesCS1D01G096200 chr1D 87.520 2516 214 60 167 2643 81480970 81483424 0.000000e+00 2815
2 TraesCS1D01G096200 chr1D 94.307 404 19 3 3187 3589 440867626 440867226 1.840000e-172 616
3 TraesCS1D01G096200 chr1D 89.944 179 16 1 1 179 81480772 81480948 2.800000e-56 230
4 TraesCS1D01G096200 chr1B 91.631 2593 137 33 201 2751 136062806 136065360 0.000000e+00 3513
5 TraesCS1D01G096200 chr1B 96.062 1625 50 5 33 1644 134722550 134724173 0.000000e+00 2634
6 TraesCS1D01G096200 chr1B 86.735 1960 184 46 167 2091 136166894 136168812 0.000000e+00 2109
7 TraesCS1D01G096200 chr1B 93.828 1118 39 13 1653 2750 134731147 134732254 0.000000e+00 1655
8 TraesCS1D01G096200 chr1B 93.451 565 34 2 2080 2643 136168832 136169394 0.000000e+00 835
9 TraesCS1D01G096200 chr1B 89.316 234 20 3 2931 3159 136065392 136065625 4.560000e-74 289
10 TraesCS1D01G096200 chr1B 92.265 181 14 0 3 183 136166698 136166878 1.280000e-64 257
11 TraesCS1D01G096200 chr1B 87.195 164 17 3 2882 3042 134732238 134732400 2.210000e-42 183
12 TraesCS1D01G096200 chr1A 95.827 1222 48 2 658 1879 100001832 100003050 0.000000e+00 1971
13 TraesCS1D01G096200 chr1A 85.297 1952 197 47 167 2096 100038253 100040136 0.000000e+00 1932
14 TraesCS1D01G096200 chr1A 93.434 731 33 2 1922 2652 100003153 100003868 0.000000e+00 1070
15 TraesCS1D01G096200 chr1A 93.805 565 32 2 2080 2643 100040148 100040710 0.000000e+00 846
16 TraesCS1D01G096200 chr1A 91.319 288 23 1 26 313 99999833 100000118 3.380000e-105 392
17 TraesCS1D01G096200 chr1A 92.460 252 18 1 352 602 100001255 100001506 3.420000e-95 359
18 TraesCS1D01G096200 chr1A 89.583 288 19 7 2883 3160 100003913 100004199 4.430000e-94 355
19 TraesCS1D01G096200 chr1A 88.208 212 22 2 2883 3092 96431155 96431365 2.150000e-62 250
20 TraesCS1D01G096200 chr1A 90.854 164 15 0 20 183 100038074 100038237 1.690000e-53 220
21 TraesCS1D01G096200 chr3B 95.000 420 20 1 3188 3607 826532344 826532762 0.000000e+00 658
22 TraesCS1D01G096200 chr3B 94.762 420 21 1 3188 3607 826417012 826417430 0.000000e+00 652
23 TraesCS1D01G096200 chr3B 96.124 129 5 0 2751 2879 252592350 252592222 1.010000e-50 211
24 TraesCS1D01G096200 chrUn 94.799 423 19 2 3188 3607 275703962 275704384 0.000000e+00 656
25 TraesCS1D01G096200 chr3A 93.571 420 27 0 3186 3605 652576122 652575703 8.500000e-176 627
26 TraesCS1D01G096200 chr3A 92.619 420 27 2 3186 3605 652664296 652663881 5.150000e-168 601
27 TraesCS1D01G096200 chr5D 94.293 403 22 1 3188 3589 28956896 28956494 1.840000e-172 616
28 TraesCS1D01G096200 chr4A 92.807 431 20 5 3188 3607 581475848 581476278 6.620000e-172 614
29 TraesCS1D01G096200 chr7D 92.619 420 28 2 3188 3607 256325616 256325200 5.150000e-168 601
30 TraesCS1D01G096200 chr7D 87.678 211 23 2 2883 3091 574011814 574012023 3.600000e-60 243
31 TraesCS1D01G096200 chr7D 94.574 129 7 0 2751 2879 629454477 629454349 2.200000e-47 200
32 TraesCS1D01G096200 chr7D 93.798 129 8 0 2751 2879 28831593 28831465 1.020000e-45 195
33 TraesCS1D01G096200 chr7D 93.023 129 9 0 2751 2879 194791811 194791683 4.750000e-44 189
34 TraesCS1D01G096200 chr5A 89.100 211 20 2 2883 3091 640071507 640071298 3.570000e-65 259
35 TraesCS1D01G096200 chr5A 90.647 139 11 2 2751 2889 691666746 691666610 2.210000e-42 183
36 TraesCS1D01G096200 chr6D 88.208 212 22 2 2883 3092 450574441 450574231 2.150000e-62 250
37 TraesCS1D01G096200 chr6D 91.912 136 10 1 2751 2886 2480654 2480788 4.750000e-44 189
38 TraesCS1D01G096200 chr7A 86.321 212 25 3 2883 3092 734654280 734654071 1.010000e-55 228
39 TraesCS1D01G096200 chr2A 86.321 212 26 2 2883 3092 779309847 779310057 1.010000e-55 228
40 TraesCS1D01G096200 chr5B 93.798 129 7 1 2751 2879 230295432 230295559 3.680000e-45 193
41 TraesCS1D01G096200 chr3D 93.023 129 9 0 2751 2879 36157374 36157502 4.750000e-44 189
42 TraesCS1D01G096200 chr7B 92.969 128 8 1 2759 2886 600654569 600654443 6.150000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G096200 chr1D 81365951 81369557 3606 False 6661.000000 6661 100.000000 1 3607 1 chr1D.!!$F1 3606
1 TraesCS1D01G096200 chr1D 81480772 81483424 2652 False 1522.500000 2815 88.732000 1 2643 2 chr1D.!!$F2 2642
2 TraesCS1D01G096200 chr1B 134722550 134724173 1623 False 2634.000000 2634 96.062000 33 1644 1 chr1B.!!$F1 1611
3 TraesCS1D01G096200 chr1B 136062806 136065625 2819 False 1901.000000 3513 90.473500 201 3159 2 chr1B.!!$F3 2958
4 TraesCS1D01G096200 chr1B 136166698 136169394 2696 False 1067.000000 2109 90.817000 3 2643 3 chr1B.!!$F4 2640
5 TraesCS1D01G096200 chr1B 134731147 134732400 1253 False 919.000000 1655 90.511500 1653 3042 2 chr1B.!!$F2 1389
6 TraesCS1D01G096200 chr1A 100038074 100040710 2636 False 999.333333 1932 89.985333 20 2643 3 chr1A.!!$F3 2623
7 TraesCS1D01G096200 chr1A 99999833 100004199 4366 False 829.400000 1971 92.524600 26 3160 5 chr1A.!!$F2 3134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 2350 0.249868 GCAGCCGCACCACTATCATA 60.25 55.0 0.0 0.0 38.36 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2824 4397 0.105778 TCAATCGATGCATACGGCCA 59.894 50.0 2.24 0.0 43.89 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 245 4.383649 CACATGCAGTTCGAATTCTTTTGG 59.616 41.667 0.00 0.00 0.00 3.28
211 247 4.909696 TGCAGTTCGAATTCTTTTGGAA 57.090 36.364 0.00 0.00 38.41 3.53
386 1529 4.158394 ACTTCTTACGCGTACCTAAATCCA 59.842 41.667 20.44 0.00 0.00 3.41
398 1541 5.880054 ACCTAAATCCATGTTCGAGTTTG 57.120 39.130 0.00 0.00 0.00 2.93
595 1752 7.789202 TCACAAGATTAATTCATTTCCCCAA 57.211 32.000 0.00 0.00 0.00 4.12
648 1809 9.396022 GAGAGAGAATGATTTTATTACCACCAA 57.604 33.333 0.00 0.00 0.00 3.67
707 2134 1.279539 CGCACACGAAACTGCATGT 59.720 52.632 0.00 0.00 43.93 3.21
853 2280 5.292589 GCCAATTGCTATTTTCAGAATGTGG 59.707 40.000 0.00 0.00 35.20 4.17
920 2350 0.249868 GCAGCCGCACCACTATCATA 60.250 55.000 0.00 0.00 38.36 2.15
930 2360 4.630069 GCACCACTATCATAACGACTTGTT 59.370 41.667 0.00 0.00 44.78 2.83
1032 2464 6.548171 GTCTCAAAGACAGTGTAGCTAGTAG 58.452 44.000 0.00 0.00 44.45 2.57
1782 3222 3.810941 TCGTAAAGAAGTTTGCCGATGTT 59.189 39.130 0.00 0.00 30.19 2.71
1893 3379 4.965119 AGAATTACATCCCTGAAAACGC 57.035 40.909 0.00 0.00 0.00 4.84
1919 3405 1.202867 TGACAGTGTGGCCATGCTTAA 60.203 47.619 9.72 0.00 0.00 1.85
1920 3406 1.470098 GACAGTGTGGCCATGCTTAAG 59.530 52.381 9.72 0.00 0.00 1.85
1963 3475 6.529220 AGCAACTAGTTCTGAAACTTCATCT 58.471 36.000 4.77 0.00 43.28 2.90
1967 3479 7.775053 ACTAGTTCTGAAACTTCATCTCTCT 57.225 36.000 0.00 0.00 43.28 3.10
2002 3516 7.957002 TGTCACAAAATTTTCTTAGGCCAATA 58.043 30.769 5.01 0.00 0.00 1.90
2091 3643 5.763204 ACACATGACCTAAATTCTGAACGTT 59.237 36.000 0.00 0.00 0.00 3.99
2658 4221 3.511540 TGTCACTACTAGAATGCAGCACT 59.488 43.478 0.00 0.00 0.00 4.40
2716 4279 6.757237 TGTAAATGGTGCAAAGATCATTGTT 58.243 32.000 11.96 0.83 32.80 2.83
2751 4324 2.602257 TCGAAGGATGCCACACTATG 57.398 50.000 0.00 0.00 0.00 2.23
2752 4325 1.831106 TCGAAGGATGCCACACTATGT 59.169 47.619 0.00 0.00 0.00 2.29
2753 4326 3.028130 TCGAAGGATGCCACACTATGTA 58.972 45.455 0.00 0.00 0.00 2.29
2754 4327 3.641436 TCGAAGGATGCCACACTATGTAT 59.359 43.478 0.00 0.00 0.00 2.29
2755 4328 3.742882 CGAAGGATGCCACACTATGTATG 59.257 47.826 0.00 0.00 0.00 2.39
2756 4329 4.708177 GAAGGATGCCACACTATGTATGT 58.292 43.478 0.00 0.00 0.00 2.29
2757 4330 5.508994 CGAAGGATGCCACACTATGTATGTA 60.509 44.000 0.00 0.00 0.00 2.29
2758 4331 6.439636 AAGGATGCCACACTATGTATGTAT 57.560 37.500 0.00 0.00 0.00 2.29
2759 4332 5.798132 AGGATGCCACACTATGTATGTATG 58.202 41.667 0.00 0.00 0.00 2.39
2760 4333 5.543790 AGGATGCCACACTATGTATGTATGA 59.456 40.000 0.00 0.00 0.00 2.15
2761 4334 5.871524 GGATGCCACACTATGTATGTATGAG 59.128 44.000 0.00 0.00 0.00 2.90
2762 4335 5.869649 TGCCACACTATGTATGTATGAGT 57.130 39.130 0.00 0.00 0.00 3.41
2763 4336 5.600696 TGCCACACTATGTATGTATGAGTG 58.399 41.667 0.00 0.00 42.58 3.51
2764 4337 4.991056 GCCACACTATGTATGTATGAGTGG 59.009 45.833 0.00 0.00 45.03 4.00
2765 4338 5.453339 GCCACACTATGTATGTATGAGTGGT 60.453 44.000 0.00 0.00 44.30 4.16
2766 4339 5.985530 CCACACTATGTATGTATGAGTGGTG 59.014 44.000 0.00 0.00 41.46 4.17
2767 4340 6.183360 CCACACTATGTATGTATGAGTGGTGA 60.183 42.308 0.00 0.00 41.46 4.02
2768 4341 6.697455 CACACTATGTATGTATGAGTGGTGAC 59.303 42.308 5.42 0.00 41.46 3.67
2769 4342 6.607600 ACACTATGTATGTATGAGTGGTGACT 59.392 38.462 5.42 0.00 41.46 3.41
2770 4343 7.124298 ACACTATGTATGTATGAGTGGTGACTT 59.876 37.037 5.42 0.00 41.46 3.01
2771 4344 7.649705 CACTATGTATGTATGAGTGGTGACTTC 59.350 40.741 0.00 0.00 35.05 3.01
2772 4345 4.993905 TGTATGTATGAGTGGTGACTTCG 58.006 43.478 0.00 0.00 30.16 3.79
2773 4346 3.526931 ATGTATGAGTGGTGACTTCGG 57.473 47.619 0.00 0.00 30.16 4.30
2774 4347 1.548719 TGTATGAGTGGTGACTTCGGG 59.451 52.381 0.00 0.00 30.16 5.14
2775 4348 1.549170 GTATGAGTGGTGACTTCGGGT 59.451 52.381 0.00 0.00 30.16 5.28
2776 4349 0.321671 ATGAGTGGTGACTTCGGGTG 59.678 55.000 0.00 0.00 30.16 4.61
2777 4350 1.004918 GAGTGGTGACTTCGGGTGG 60.005 63.158 0.00 0.00 30.16 4.61
2778 4351 2.668550 GTGGTGACTTCGGGTGGC 60.669 66.667 0.00 0.00 0.00 5.01
2779 4352 2.847234 TGGTGACTTCGGGTGGCT 60.847 61.111 0.00 0.00 0.00 4.75
2780 4353 2.430367 GGTGACTTCGGGTGGCTT 59.570 61.111 0.00 0.00 0.00 4.35
2781 4354 1.966451 GGTGACTTCGGGTGGCTTG 60.966 63.158 0.00 0.00 0.00 4.01
2782 4355 1.070786 GTGACTTCGGGTGGCTTGA 59.929 57.895 0.00 0.00 0.00 3.02
2783 4356 0.321653 GTGACTTCGGGTGGCTTGAT 60.322 55.000 0.00 0.00 0.00 2.57
2784 4357 0.321564 TGACTTCGGGTGGCTTGATG 60.322 55.000 0.00 0.00 0.00 3.07
2785 4358 0.321653 GACTTCGGGTGGCTTGATGT 60.322 55.000 0.00 0.00 0.00 3.06
2786 4359 0.981183 ACTTCGGGTGGCTTGATGTA 59.019 50.000 0.00 0.00 0.00 2.29
2787 4360 1.559682 ACTTCGGGTGGCTTGATGTAT 59.440 47.619 0.00 0.00 0.00 2.29
2788 4361 1.942657 CTTCGGGTGGCTTGATGTATG 59.057 52.381 0.00 0.00 0.00 2.39
2789 4362 0.908910 TCGGGTGGCTTGATGTATGT 59.091 50.000 0.00 0.00 0.00 2.29
2790 4363 1.280710 TCGGGTGGCTTGATGTATGTT 59.719 47.619 0.00 0.00 0.00 2.71
2791 4364 1.670811 CGGGTGGCTTGATGTATGTTC 59.329 52.381 0.00 0.00 0.00 3.18
2792 4365 2.680805 CGGGTGGCTTGATGTATGTTCT 60.681 50.000 0.00 0.00 0.00 3.01
2793 4366 3.356290 GGGTGGCTTGATGTATGTTCTT 58.644 45.455 0.00 0.00 0.00 2.52
2794 4367 3.129287 GGGTGGCTTGATGTATGTTCTTG 59.871 47.826 0.00 0.00 0.00 3.02
2795 4368 3.758554 GGTGGCTTGATGTATGTTCTTGT 59.241 43.478 0.00 0.00 0.00 3.16
2796 4369 4.218417 GGTGGCTTGATGTATGTTCTTGTT 59.782 41.667 0.00 0.00 0.00 2.83
2797 4370 5.414454 GGTGGCTTGATGTATGTTCTTGTTA 59.586 40.000 0.00 0.00 0.00 2.41
2798 4371 6.403636 GGTGGCTTGATGTATGTTCTTGTTAG 60.404 42.308 0.00 0.00 0.00 2.34
2799 4372 6.371548 GTGGCTTGATGTATGTTCTTGTTAGA 59.628 38.462 0.00 0.00 0.00 2.10
2800 4373 7.066284 GTGGCTTGATGTATGTTCTTGTTAGAT 59.934 37.037 0.00 0.00 0.00 1.98
2801 4374 7.611467 TGGCTTGATGTATGTTCTTGTTAGATT 59.389 33.333 0.00 0.00 0.00 2.40
2802 4375 8.462016 GGCTTGATGTATGTTCTTGTTAGATTT 58.538 33.333 0.00 0.00 0.00 2.17
2829 4402 7.356540 TGTTGAATAATAAATAACGATGGCCG 58.643 34.615 0.00 0.00 45.44 6.13
2838 4411 3.159070 CGATGGCCGTATGCATCG 58.841 61.111 0.19 7.03 43.89 3.84
2839 4412 1.372872 CGATGGCCGTATGCATCGA 60.373 57.895 14.00 0.00 45.50 3.59
2840 4413 0.737367 CGATGGCCGTATGCATCGAT 60.737 55.000 14.00 0.00 45.50 3.59
2841 4414 1.442769 GATGGCCGTATGCATCGATT 58.557 50.000 16.69 0.00 43.89 3.34
2842 4415 1.129251 GATGGCCGTATGCATCGATTG 59.871 52.381 16.69 0.00 43.89 2.67
2843 4416 0.105778 TGGCCGTATGCATCGATTGA 59.894 50.000 16.69 0.00 43.89 2.57
2844 4417 1.270785 TGGCCGTATGCATCGATTGAT 60.271 47.619 16.69 0.00 43.89 2.57
2853 4426 0.873054 CATCGATTGATGCAGAGGCC 59.127 55.000 10.05 0.00 45.06 5.19
2854 4427 0.602106 ATCGATTGATGCAGAGGCCG 60.602 55.000 0.00 0.00 40.13 6.13
2855 4428 2.249535 CGATTGATGCAGAGGCCGG 61.250 63.158 0.00 0.00 40.13 6.13
2856 4429 1.895707 GATTGATGCAGAGGCCGGG 60.896 63.158 2.18 0.00 40.13 5.73
2857 4430 3.426309 ATTGATGCAGAGGCCGGGG 62.426 63.158 2.18 0.00 40.13 5.73
2863 4436 2.365105 CAGAGGCCGGGGGTCTTA 60.365 66.667 2.18 0.00 38.01 2.10
2864 4437 1.993391 CAGAGGCCGGGGGTCTTAA 60.993 63.158 2.18 0.00 38.01 1.85
2865 4438 1.993948 AGAGGCCGGGGGTCTTAAC 60.994 63.158 2.18 0.00 38.01 2.01
2866 4439 3.013327 AGGCCGGGGGTCTTAACC 61.013 66.667 2.18 0.00 45.65 2.85
2867 4440 3.013327 GGCCGGGGGTCTTAACCT 61.013 66.667 2.18 0.00 45.66 3.50
2868 4441 2.588439 GCCGGGGGTCTTAACCTC 59.412 66.667 2.18 0.00 46.40 3.85
2875 4448 3.083122 GGGGTCTTAACCTCCTTTTCC 57.917 52.381 0.00 0.00 45.66 3.13
2876 4449 2.377531 GGGGTCTTAACCTCCTTTTCCA 59.622 50.000 0.00 0.00 45.66 3.53
2877 4450 3.181426 GGGGTCTTAACCTCCTTTTCCAA 60.181 47.826 0.00 0.00 45.66 3.53
2878 4451 4.476297 GGGTCTTAACCTCCTTTTCCAAA 58.524 43.478 0.00 0.00 45.66 3.28
2879 4452 4.523173 GGGTCTTAACCTCCTTTTCCAAAG 59.477 45.833 0.00 0.00 45.66 2.77
2880 4453 5.382616 GGTCTTAACCTCCTTTTCCAAAGA 58.617 41.667 0.00 0.00 42.80 2.52
2881 4454 5.473846 GGTCTTAACCTCCTTTTCCAAAGAG 59.526 44.000 0.00 0.00 42.80 2.85
2882 4455 6.296803 GTCTTAACCTCCTTTTCCAAAGAGA 58.703 40.000 0.00 0.00 0.00 3.10
2883 4456 6.771267 GTCTTAACCTCCTTTTCCAAAGAGAA 59.229 38.462 0.00 0.00 0.00 2.87
2884 4457 7.284716 GTCTTAACCTCCTTTTCCAAAGAGAAA 59.715 37.037 0.00 0.00 33.98 2.52
2885 4458 7.502561 TCTTAACCTCCTTTTCCAAAGAGAAAG 59.497 37.037 0.00 0.00 37.09 2.62
2886 4459 4.474394 ACCTCCTTTTCCAAAGAGAAAGG 58.526 43.478 7.59 7.59 46.86 3.11
2891 4464 4.814147 CTTTTCCAAAGAGAAAGGATGCC 58.186 43.478 0.00 0.00 37.09 4.40
2892 4465 3.524095 TTCCAAAGAGAAAGGATGCCA 57.476 42.857 0.00 0.00 0.00 4.92
2893 4466 2.795329 TCCAAAGAGAAAGGATGCCAC 58.205 47.619 0.00 0.00 0.00 5.01
2894 4467 2.108075 TCCAAAGAGAAAGGATGCCACA 59.892 45.455 0.00 0.00 0.00 4.17
2895 4468 2.229784 CCAAAGAGAAAGGATGCCACAC 59.770 50.000 0.00 0.00 0.00 3.82
2896 4469 3.152341 CAAAGAGAAAGGATGCCACACT 58.848 45.455 0.00 0.00 0.00 3.55
2897 4470 4.326826 CAAAGAGAAAGGATGCCACACTA 58.673 43.478 0.00 0.00 0.00 2.74
2898 4471 4.640771 AAGAGAAAGGATGCCACACTAA 57.359 40.909 0.00 0.00 0.00 2.24
2916 4489 7.190871 CACACTAACGGAAATGTTTGTACTTT 58.809 34.615 0.00 0.00 36.02 2.66
2959 4542 5.590259 GCCCAGAACACATACATCAACTTAT 59.410 40.000 0.00 0.00 0.00 1.73
2973 4556 8.261492 ACATCAACTTATCTTCATCACTCAAC 57.739 34.615 0.00 0.00 0.00 3.18
3031 4616 3.107601 TCTAGCTAGCTGGGTGACAAAT 58.892 45.455 27.68 0.00 0.00 2.32
3092 4677 2.303175 GGTGGTAGTTTTGCAAGTCCA 58.697 47.619 0.00 2.88 0.00 4.02
3163 4749 8.840833 TCATGACTATAACAAAAAGTAGCACA 57.159 30.769 0.00 0.00 0.00 4.57
3164 4750 8.717821 TCATGACTATAACAAAAAGTAGCACAC 58.282 33.333 0.00 0.00 0.00 3.82
3165 4751 8.503196 CATGACTATAACAAAAAGTAGCACACA 58.497 33.333 0.00 0.00 0.00 3.72
3166 4752 8.439993 TGACTATAACAAAAAGTAGCACACAA 57.560 30.769 0.00 0.00 0.00 3.33
3167 4753 8.339714 TGACTATAACAAAAAGTAGCACACAAC 58.660 33.333 0.00 0.00 0.00 3.32
3168 4754 8.215926 ACTATAACAAAAAGTAGCACACAACA 57.784 30.769 0.00 0.00 0.00 3.33
3169 4755 8.679100 ACTATAACAAAAAGTAGCACACAACAA 58.321 29.630 0.00 0.00 0.00 2.83
3170 4756 9.677567 CTATAACAAAAAGTAGCACACAACAAT 57.322 29.630 0.00 0.00 0.00 2.71
3171 4757 6.885735 AACAAAAAGTAGCACACAACAATC 57.114 33.333 0.00 0.00 0.00 2.67
3172 4758 6.207691 ACAAAAAGTAGCACACAACAATCT 57.792 33.333 0.00 0.00 0.00 2.40
3173 4759 7.328277 ACAAAAAGTAGCACACAACAATCTA 57.672 32.000 0.00 0.00 0.00 1.98
3174 4760 7.417612 ACAAAAAGTAGCACACAACAATCTAG 58.582 34.615 0.00 0.00 0.00 2.43
3175 4761 5.613358 AAAGTAGCACACAACAATCTAGC 57.387 39.130 0.00 0.00 0.00 3.42
3176 4762 4.271696 AGTAGCACACAACAATCTAGCA 57.728 40.909 0.00 0.00 0.00 3.49
3177 4763 4.836825 AGTAGCACACAACAATCTAGCAT 58.163 39.130 0.00 0.00 0.00 3.79
3178 4764 5.977635 AGTAGCACACAACAATCTAGCATA 58.022 37.500 0.00 0.00 0.00 3.14
3179 4765 5.812642 AGTAGCACACAACAATCTAGCATAC 59.187 40.000 0.00 0.00 0.00 2.39
3180 4766 4.836825 AGCACACAACAATCTAGCATACT 58.163 39.130 0.00 0.00 0.00 2.12
3181 4767 5.977635 AGCACACAACAATCTAGCATACTA 58.022 37.500 0.00 0.00 0.00 1.82
3182 4768 6.406370 AGCACACAACAATCTAGCATACTAA 58.594 36.000 0.00 0.00 0.00 2.24
3183 4769 6.878923 AGCACACAACAATCTAGCATACTAAA 59.121 34.615 0.00 0.00 0.00 1.85
3184 4770 7.390440 AGCACACAACAATCTAGCATACTAAAA 59.610 33.333 0.00 0.00 0.00 1.52
3185 4771 7.693951 GCACACAACAATCTAGCATACTAAAAG 59.306 37.037 0.00 0.00 0.00 2.27
3186 4772 8.935844 CACACAACAATCTAGCATACTAAAAGA 58.064 33.333 0.00 0.00 0.00 2.52
3187 4773 9.502091 ACACAACAATCTAGCATACTAAAAGAA 57.498 29.630 0.00 0.00 0.00 2.52
3188 4774 9.760660 CACAACAATCTAGCATACTAAAAGAAC 57.239 33.333 0.00 0.00 0.00 3.01
3189 4775 9.726438 ACAACAATCTAGCATACTAAAAGAACT 57.274 29.630 0.00 0.00 0.00 3.01
3199 4785 7.701501 AGCATACTAAAAGAACTAGTAGAACGC 59.298 37.037 3.59 0.00 35.78 4.84
3200 4786 7.043524 GCATACTAAAAGAACTAGTAGAACGCC 60.044 40.741 3.59 0.00 35.78 5.68
3201 4787 5.718146 ACTAAAAGAACTAGTAGAACGCCC 58.282 41.667 3.59 0.00 0.00 6.13
3202 4788 4.612264 AAAAGAACTAGTAGAACGCCCA 57.388 40.909 3.59 0.00 0.00 5.36
3203 4789 4.820894 AAAGAACTAGTAGAACGCCCAT 57.179 40.909 3.59 0.00 0.00 4.00
3204 4790 3.802948 AGAACTAGTAGAACGCCCATG 57.197 47.619 3.59 0.00 0.00 3.66
3205 4791 2.159085 AGAACTAGTAGAACGCCCATGC 60.159 50.000 3.59 0.00 0.00 4.06
3222 4808 4.278956 CGTTGCTACGGGCTCTTT 57.721 55.556 13.04 0.00 43.94 2.52
3223 4809 1.787847 CGTTGCTACGGGCTCTTTG 59.212 57.895 13.04 0.00 43.94 2.77
3224 4810 0.949105 CGTTGCTACGGGCTCTTTGT 60.949 55.000 13.04 0.00 43.94 2.83
3225 4811 1.670674 CGTTGCTACGGGCTCTTTGTA 60.671 52.381 13.04 0.00 43.94 2.41
3226 4812 2.629051 GTTGCTACGGGCTCTTTGTAT 58.371 47.619 4.43 0.00 42.39 2.29
3227 4813 3.735820 CGTTGCTACGGGCTCTTTGTATA 60.736 47.826 13.04 0.00 43.94 1.47
3228 4814 4.377897 GTTGCTACGGGCTCTTTGTATAT 58.622 43.478 4.43 0.00 42.39 0.86
3229 4815 5.535333 GTTGCTACGGGCTCTTTGTATATA 58.465 41.667 4.43 0.00 42.39 0.86
3230 4816 5.794726 TGCTACGGGCTCTTTGTATATAA 57.205 39.130 4.43 0.00 42.39 0.98
3231 4817 5.535333 TGCTACGGGCTCTTTGTATATAAC 58.465 41.667 4.43 0.00 42.39 1.89
3232 4818 5.069383 TGCTACGGGCTCTTTGTATATAACA 59.931 40.000 4.43 0.00 42.39 2.41
3233 4819 5.987347 GCTACGGGCTCTTTGTATATAACAA 59.013 40.000 0.00 0.00 41.10 2.83
3234 4820 6.649557 GCTACGGGCTCTTTGTATATAACAAT 59.350 38.462 0.00 0.00 41.78 2.71
3235 4821 7.816031 GCTACGGGCTCTTTGTATATAACAATA 59.184 37.037 0.00 0.00 41.78 1.90
3305 4891 4.374843 TGCTTATGCATCATTGTCCAAC 57.625 40.909 0.19 0.00 45.31 3.77
3306 4892 4.018490 TGCTTATGCATCATTGTCCAACT 58.982 39.130 0.19 0.00 45.31 3.16
3307 4893 4.463539 TGCTTATGCATCATTGTCCAACTT 59.536 37.500 0.19 0.00 45.31 2.66
3308 4894 5.047164 TGCTTATGCATCATTGTCCAACTTT 60.047 36.000 0.19 0.00 45.31 2.66
3309 4895 5.870978 GCTTATGCATCATTGTCCAACTTTT 59.129 36.000 0.19 0.00 39.41 2.27
3310 4896 6.369615 GCTTATGCATCATTGTCCAACTTTTT 59.630 34.615 0.19 0.00 39.41 1.94
3334 4920 8.617290 TTTTATGTAAAGACCCTCTTTCTCAC 57.383 34.615 0.47 0.00 42.60 3.51
3335 4921 7.554959 TTATGTAAAGACCCTCTTTCTCACT 57.445 36.000 0.47 0.00 42.60 3.41
3336 4922 5.470047 TGTAAAGACCCTCTTTCTCACTC 57.530 43.478 0.47 0.00 42.60 3.51
3337 4923 5.148502 TGTAAAGACCCTCTTTCTCACTCT 58.851 41.667 0.47 0.00 42.60 3.24
3338 4924 4.615588 AAAGACCCTCTTTCTCACTCTG 57.384 45.455 0.00 0.00 42.60 3.35
3339 4925 3.252554 AGACCCTCTTTCTCACTCTGT 57.747 47.619 0.00 0.00 0.00 3.41
3340 4926 3.161866 AGACCCTCTTTCTCACTCTGTC 58.838 50.000 0.00 0.00 0.00 3.51
3341 4927 3.161866 GACCCTCTTTCTCACTCTGTCT 58.838 50.000 0.00 0.00 0.00 3.41
3342 4928 3.161866 ACCCTCTTTCTCACTCTGTCTC 58.838 50.000 0.00 0.00 0.00 3.36
3343 4929 3.181423 ACCCTCTTTCTCACTCTGTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
3344 4930 3.443681 CCCTCTTTCTCACTCTGTCTCTC 59.556 52.174 0.00 0.00 0.00 3.20
3345 4931 4.078537 CCTCTTTCTCACTCTGTCTCTCA 58.921 47.826 0.00 0.00 0.00 3.27
3346 4932 4.706476 CCTCTTTCTCACTCTGTCTCTCAT 59.294 45.833 0.00 0.00 0.00 2.90
3347 4933 5.163622 CCTCTTTCTCACTCTGTCTCTCATC 60.164 48.000 0.00 0.00 0.00 2.92
3348 4934 5.569355 TCTTTCTCACTCTGTCTCTCATCT 58.431 41.667 0.00 0.00 0.00 2.90
3349 4935 5.647658 TCTTTCTCACTCTGTCTCTCATCTC 59.352 44.000 0.00 0.00 0.00 2.75
3350 4936 3.884895 TCTCACTCTGTCTCTCATCTCC 58.115 50.000 0.00 0.00 0.00 3.71
3351 4937 3.265479 TCTCACTCTGTCTCTCATCTCCA 59.735 47.826 0.00 0.00 0.00 3.86
3352 4938 4.015764 CTCACTCTGTCTCTCATCTCCAA 58.984 47.826 0.00 0.00 0.00 3.53
3353 4939 3.761218 TCACTCTGTCTCTCATCTCCAAC 59.239 47.826 0.00 0.00 0.00 3.77
3354 4940 3.509184 CACTCTGTCTCTCATCTCCAACA 59.491 47.826 0.00 0.00 0.00 3.33
3355 4941 3.509575 ACTCTGTCTCTCATCTCCAACAC 59.490 47.826 0.00 0.00 0.00 3.32
3356 4942 3.763360 CTCTGTCTCTCATCTCCAACACT 59.237 47.826 0.00 0.00 0.00 3.55
3357 4943 3.761218 TCTGTCTCTCATCTCCAACACTC 59.239 47.826 0.00 0.00 0.00 3.51
3358 4944 3.763360 CTGTCTCTCATCTCCAACACTCT 59.237 47.826 0.00 0.00 0.00 3.24
3359 4945 4.155709 TGTCTCTCATCTCCAACACTCTT 58.844 43.478 0.00 0.00 0.00 2.85
3360 4946 4.219507 TGTCTCTCATCTCCAACACTCTTC 59.780 45.833 0.00 0.00 0.00 2.87
3361 4947 4.462483 GTCTCTCATCTCCAACACTCTTCT 59.538 45.833 0.00 0.00 0.00 2.85
3362 4948 5.047377 GTCTCTCATCTCCAACACTCTTCTT 60.047 44.000 0.00 0.00 0.00 2.52
3363 4949 5.541868 TCTCTCATCTCCAACACTCTTCTTT 59.458 40.000 0.00 0.00 0.00 2.52
3364 4950 5.788450 TCTCATCTCCAACACTCTTCTTTC 58.212 41.667 0.00 0.00 0.00 2.62
3365 4951 5.541868 TCTCATCTCCAACACTCTTCTTTCT 59.458 40.000 0.00 0.00 0.00 2.52
3366 4952 5.788450 TCATCTCCAACACTCTTCTTTCTC 58.212 41.667 0.00 0.00 0.00 2.87
3367 4953 5.541868 TCATCTCCAACACTCTTCTTTCTCT 59.458 40.000 0.00 0.00 0.00 3.10
3368 4954 5.461032 TCTCCAACACTCTTCTTTCTCTC 57.539 43.478 0.00 0.00 0.00 3.20
3369 4955 5.144100 TCTCCAACACTCTTCTTTCTCTCT 58.856 41.667 0.00 0.00 0.00 3.10
3370 4956 5.242838 TCTCCAACACTCTTCTTTCTCTCTC 59.757 44.000 0.00 0.00 0.00 3.20
3371 4957 5.144100 TCCAACACTCTTCTTTCTCTCTCT 58.856 41.667 0.00 0.00 0.00 3.10
3372 4958 5.242838 TCCAACACTCTTCTTTCTCTCTCTC 59.757 44.000 0.00 0.00 0.00 3.20
3373 4959 5.243730 CCAACACTCTTCTTTCTCTCTCTCT 59.756 44.000 0.00 0.00 0.00 3.10
3374 4960 6.381801 CAACACTCTTCTTTCTCTCTCTCTC 58.618 44.000 0.00 0.00 0.00 3.20
3375 4961 5.880901 ACACTCTTCTTTCTCTCTCTCTCT 58.119 41.667 0.00 0.00 0.00 3.10
3376 4962 5.940470 ACACTCTTCTTTCTCTCTCTCTCTC 59.060 44.000 0.00 0.00 0.00 3.20
3377 4963 5.355350 CACTCTTCTTTCTCTCTCTCTCTCC 59.645 48.000 0.00 0.00 0.00 3.71
3378 4964 5.014123 ACTCTTCTTTCTCTCTCTCTCTCCA 59.986 44.000 0.00 0.00 0.00 3.86
3379 4965 5.886609 TCTTCTTTCTCTCTCTCTCTCCAA 58.113 41.667 0.00 0.00 0.00 3.53
3380 4966 5.710099 TCTTCTTTCTCTCTCTCTCTCCAAC 59.290 44.000 0.00 0.00 0.00 3.77
3381 4967 4.340617 TCTTTCTCTCTCTCTCTCCAACC 58.659 47.826 0.00 0.00 0.00 3.77
3382 4968 3.816398 TTCTCTCTCTCTCTCCAACCA 57.184 47.619 0.00 0.00 0.00 3.67
3383 4969 4.329638 TTCTCTCTCTCTCTCCAACCAT 57.670 45.455 0.00 0.00 0.00 3.55
3384 4970 4.329638 TCTCTCTCTCTCTCCAACCATT 57.670 45.455 0.00 0.00 0.00 3.16
3385 4971 4.682563 TCTCTCTCTCTCTCCAACCATTT 58.317 43.478 0.00 0.00 0.00 2.32
3386 4972 5.090139 TCTCTCTCTCTCTCCAACCATTTT 58.910 41.667 0.00 0.00 0.00 1.82
3387 4973 5.186797 TCTCTCTCTCTCTCCAACCATTTTC 59.813 44.000 0.00 0.00 0.00 2.29
3388 4974 5.090139 TCTCTCTCTCTCCAACCATTTTCT 58.910 41.667 0.00 0.00 0.00 2.52
3389 4975 5.545723 TCTCTCTCTCTCCAACCATTTTCTT 59.454 40.000 0.00 0.00 0.00 2.52
3390 4976 6.726299 TCTCTCTCTCTCCAACCATTTTCTTA 59.274 38.462 0.00 0.00 0.00 2.10
3391 4977 7.401493 TCTCTCTCTCTCCAACCATTTTCTTAT 59.599 37.037 0.00 0.00 0.00 1.73
3392 4978 7.922382 TCTCTCTCTCCAACCATTTTCTTATT 58.078 34.615 0.00 0.00 0.00 1.40
3393 4979 7.826252 TCTCTCTCTCCAACCATTTTCTTATTG 59.174 37.037 0.00 0.00 0.00 1.90
3394 4980 7.461749 TCTCTCTCCAACCATTTTCTTATTGT 58.538 34.615 0.00 0.00 0.00 2.71
3395 4981 7.391554 TCTCTCTCCAACCATTTTCTTATTGTG 59.608 37.037 0.00 0.00 0.00 3.33
3396 4982 6.024552 TCTCCAACCATTTTCTTATTGTGC 57.975 37.500 0.00 0.00 0.00 4.57
3397 4983 5.047377 TCTCCAACCATTTTCTTATTGTGCC 60.047 40.000 0.00 0.00 0.00 5.01
3398 4984 4.020662 TCCAACCATTTTCTTATTGTGCCC 60.021 41.667 0.00 0.00 0.00 5.36
3399 4985 4.020307 CCAACCATTTTCTTATTGTGCCCT 60.020 41.667 0.00 0.00 0.00 5.19
3400 4986 5.170748 CAACCATTTTCTTATTGTGCCCTC 58.829 41.667 0.00 0.00 0.00 4.30
3401 4987 4.415596 ACCATTTTCTTATTGTGCCCTCA 58.584 39.130 0.00 0.00 0.00 3.86
3402 4988 5.025453 ACCATTTTCTTATTGTGCCCTCAT 58.975 37.500 0.00 0.00 0.00 2.90
3403 4989 5.127682 ACCATTTTCTTATTGTGCCCTCATC 59.872 40.000 0.00 0.00 0.00 2.92
3404 4990 5.361857 CCATTTTCTTATTGTGCCCTCATCT 59.638 40.000 0.00 0.00 0.00 2.90
3405 4991 6.127253 CCATTTTCTTATTGTGCCCTCATCTT 60.127 38.462 0.00 0.00 0.00 2.40
3406 4992 6.515272 TTTTCTTATTGTGCCCTCATCTTC 57.485 37.500 0.00 0.00 0.00 2.87
3407 4993 5.441718 TTCTTATTGTGCCCTCATCTTCT 57.558 39.130 0.00 0.00 0.00 2.85
3408 4994 5.028549 TCTTATTGTGCCCTCATCTTCTC 57.971 43.478 0.00 0.00 0.00 2.87
3409 4995 2.725221 ATTGTGCCCTCATCTTCTCC 57.275 50.000 0.00 0.00 0.00 3.71
3410 4996 1.361204 TTGTGCCCTCATCTTCTCCA 58.639 50.000 0.00 0.00 0.00 3.86
3411 4997 1.588239 TGTGCCCTCATCTTCTCCAT 58.412 50.000 0.00 0.00 0.00 3.41
3412 4998 1.487976 TGTGCCCTCATCTTCTCCATC 59.512 52.381 0.00 0.00 0.00 3.51
3413 4999 1.767681 GTGCCCTCATCTTCTCCATCT 59.232 52.381 0.00 0.00 0.00 2.90
3414 5000 2.172293 GTGCCCTCATCTTCTCCATCTT 59.828 50.000 0.00 0.00 0.00 2.40
3415 5001 2.437281 TGCCCTCATCTTCTCCATCTTC 59.563 50.000 0.00 0.00 0.00 2.87
3416 5002 2.705127 GCCCTCATCTTCTCCATCTTCT 59.295 50.000 0.00 0.00 0.00 2.85
3417 5003 3.244181 GCCCTCATCTTCTCCATCTTCTC 60.244 52.174 0.00 0.00 0.00 2.87
3418 5004 3.966006 CCCTCATCTTCTCCATCTTCTCA 59.034 47.826 0.00 0.00 0.00 3.27
3419 5005 4.408270 CCCTCATCTTCTCCATCTTCTCAA 59.592 45.833 0.00 0.00 0.00 3.02
3420 5006 5.104610 CCCTCATCTTCTCCATCTTCTCAAA 60.105 44.000 0.00 0.00 0.00 2.69
3421 5007 6.409464 CCCTCATCTTCTCCATCTTCTCAAAT 60.409 42.308 0.00 0.00 0.00 2.32
3422 5008 7.055378 CCTCATCTTCTCCATCTTCTCAAATT 58.945 38.462 0.00 0.00 0.00 1.82
3423 5009 7.227116 CCTCATCTTCTCCATCTTCTCAAATTC 59.773 40.741 0.00 0.00 0.00 2.17
3424 5010 7.052873 TCATCTTCTCCATCTTCTCAAATTCC 58.947 38.462 0.00 0.00 0.00 3.01
3425 5011 5.749462 TCTTCTCCATCTTCTCAAATTCCC 58.251 41.667 0.00 0.00 0.00 3.97
3426 5012 5.490357 TCTTCTCCATCTTCTCAAATTCCCT 59.510 40.000 0.00 0.00 0.00 4.20
3427 5013 5.365021 TCTCCATCTTCTCAAATTCCCTC 57.635 43.478 0.00 0.00 0.00 4.30
3428 5014 4.784838 TCTCCATCTTCTCAAATTCCCTCA 59.215 41.667 0.00 0.00 0.00 3.86
3429 5015 5.251468 TCTCCATCTTCTCAAATTCCCTCAA 59.749 40.000 0.00 0.00 0.00 3.02
3430 5016 6.069206 TCTCCATCTTCTCAAATTCCCTCAAT 60.069 38.462 0.00 0.00 0.00 2.57
3431 5017 6.125029 TCCATCTTCTCAAATTCCCTCAATC 58.875 40.000 0.00 0.00 0.00 2.67
3432 5018 5.889853 CCATCTTCTCAAATTCCCTCAATCA 59.110 40.000 0.00 0.00 0.00 2.57
3433 5019 6.039493 CCATCTTCTCAAATTCCCTCAATCAG 59.961 42.308 0.00 0.00 0.00 2.90
3434 5020 6.131972 TCTTCTCAAATTCCCTCAATCAGT 57.868 37.500 0.00 0.00 0.00 3.41
3435 5021 6.546484 TCTTCTCAAATTCCCTCAATCAGTT 58.454 36.000 0.00 0.00 0.00 3.16
3436 5022 7.689299 TCTTCTCAAATTCCCTCAATCAGTTA 58.311 34.615 0.00 0.00 0.00 2.24
3437 5023 8.331740 TCTTCTCAAATTCCCTCAATCAGTTAT 58.668 33.333 0.00 0.00 0.00 1.89
3438 5024 8.884124 TTCTCAAATTCCCTCAATCAGTTATT 57.116 30.769 0.00 0.00 0.00 1.40
3439 5025 8.884124 TCTCAAATTCCCTCAATCAGTTATTT 57.116 30.769 0.00 0.00 0.00 1.40
3440 5026 9.973661 TCTCAAATTCCCTCAATCAGTTATTTA 57.026 29.630 0.00 0.00 0.00 1.40
3445 5031 9.533831 AATTCCCTCAATCAGTTATTTAAGTGT 57.466 29.630 5.34 0.00 37.75 3.55
3446 5032 8.934023 TTCCCTCAATCAGTTATTTAAGTGTT 57.066 30.769 5.34 0.00 37.75 3.32
3447 5033 8.561738 TCCCTCAATCAGTTATTTAAGTGTTC 57.438 34.615 5.34 0.00 37.75 3.18
3448 5034 7.333423 TCCCTCAATCAGTTATTTAAGTGTTCG 59.667 37.037 5.34 0.00 37.75 3.95
3449 5035 7.333423 CCCTCAATCAGTTATTTAAGTGTTCGA 59.667 37.037 5.34 0.00 37.75 3.71
3450 5036 8.169268 CCTCAATCAGTTATTTAAGTGTTCGAC 58.831 37.037 5.34 0.00 37.75 4.20
3451 5037 8.827177 TCAATCAGTTATTTAAGTGTTCGACT 57.173 30.769 5.34 0.00 37.75 4.18
3452 5038 9.917129 TCAATCAGTTATTTAAGTGTTCGACTA 57.083 29.630 5.34 0.00 37.75 2.59
3498 5084 8.821894 CAGTGTAATATTTTCAGGACTAAGAGC 58.178 37.037 0.00 0.00 0.00 4.09
3499 5085 8.540388 AGTGTAATATTTTCAGGACTAAGAGCA 58.460 33.333 0.00 0.00 0.00 4.26
3500 5086 9.331282 GTGTAATATTTTCAGGACTAAGAGCAT 57.669 33.333 0.00 0.00 0.00 3.79
3501 5087 9.547753 TGTAATATTTTCAGGACTAAGAGCATC 57.452 33.333 0.00 0.00 0.00 3.91
3517 5103 4.433615 GAGCATCTTCAATAGACGGTTCA 58.566 43.478 0.00 0.00 35.19 3.18
3518 5104 5.028549 AGCATCTTCAATAGACGGTTCAT 57.971 39.130 0.00 0.00 35.19 2.57
3519 5105 6.161855 AGCATCTTCAATAGACGGTTCATA 57.838 37.500 0.00 0.00 35.19 2.15
3520 5106 6.763355 AGCATCTTCAATAGACGGTTCATAT 58.237 36.000 0.00 0.00 35.19 1.78
3521 5107 6.648310 AGCATCTTCAATAGACGGTTCATATG 59.352 38.462 0.00 0.00 35.19 1.78
3522 5108 6.425114 GCATCTTCAATAGACGGTTCATATGT 59.575 38.462 1.90 0.00 35.19 2.29
3523 5109 7.598869 GCATCTTCAATAGACGGTTCATATGTA 59.401 37.037 1.90 0.00 35.19 2.29
3524 5110 9.476202 CATCTTCAATAGACGGTTCATATGTAA 57.524 33.333 1.90 0.00 35.19 2.41
3526 5112 9.878667 TCTTCAATAGACGGTTCATATGTAAAA 57.121 29.630 1.90 0.00 0.00 1.52
3533 5119 8.795842 AGACGGTTCATATGTAAAAATAACCA 57.204 30.769 16.23 0.00 35.68 3.67
3534 5120 9.233649 AGACGGTTCATATGTAAAAATAACCAA 57.766 29.630 16.23 0.00 35.68 3.67
3535 5121 9.281075 GACGGTTCATATGTAAAAATAACCAAC 57.719 33.333 16.23 8.45 35.68 3.77
3536 5122 9.016438 ACGGTTCATATGTAAAAATAACCAACT 57.984 29.630 16.23 1.06 35.68 3.16
3537 5123 9.849166 CGGTTCATATGTAAAAATAACCAACTT 57.151 29.630 16.23 0.00 35.68 2.66
3551 5137 9.971922 AAATAACCAACTTTTGAATCTTCTGAG 57.028 29.630 0.00 0.00 0.00 3.35
3552 5138 6.396829 AACCAACTTTTGAATCTTCTGAGG 57.603 37.500 0.00 0.00 0.00 3.86
3553 5139 4.279420 ACCAACTTTTGAATCTTCTGAGGC 59.721 41.667 0.00 0.00 0.00 4.70
3554 5140 4.279169 CCAACTTTTGAATCTTCTGAGGCA 59.721 41.667 0.00 0.00 0.00 4.75
3555 5141 5.221303 CCAACTTTTGAATCTTCTGAGGCAA 60.221 40.000 0.00 0.00 0.00 4.52
3556 5142 6.275335 CAACTTTTGAATCTTCTGAGGCAAA 58.725 36.000 0.00 0.00 31.75 3.68
3557 5143 6.469782 ACTTTTGAATCTTCTGAGGCAAAA 57.530 33.333 0.00 0.00 37.10 2.44
3558 5144 6.877236 ACTTTTGAATCTTCTGAGGCAAAAA 58.123 32.000 0.00 0.00 38.00 1.94
3587 5173 2.934887 CCAACAGATGGTCCATATGCA 58.065 47.619 23.59 0.00 44.85 3.96
3588 5174 3.289836 CCAACAGATGGTCCATATGCAA 58.710 45.455 23.59 0.00 44.85 4.08
3589 5175 3.700539 CCAACAGATGGTCCATATGCAAA 59.299 43.478 23.59 0.00 44.85 3.68
3590 5176 4.160065 CCAACAGATGGTCCATATGCAAAA 59.840 41.667 23.59 0.00 44.85 2.44
3591 5177 5.337410 CCAACAGATGGTCCATATGCAAAAA 60.337 40.000 23.59 0.00 44.85 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 4.259095 GCGTTTAACACTTTCAAACCAACG 60.259 41.667 0.00 0.00 37.98 4.10
386 1529 1.597742 ACAGCAGCAAACTCGAACAT 58.402 45.000 0.00 0.00 0.00 2.71
398 1541 2.315925 TAGACTGGCATTACAGCAGC 57.684 50.000 0.00 0.00 42.21 5.25
465 1616 3.079578 AGTGAATGTGATGGTGCTTCAG 58.920 45.455 0.00 0.00 0.00 3.02
615 1776 2.115337 ATCATTCTCTCTCCCAGGGG 57.885 55.000 5.33 0.92 0.00 4.79
618 1779 8.213679 TGGTAATAAAATCATTCTCTCTCCCAG 58.786 37.037 0.00 0.00 0.00 4.45
620 1781 7.445707 GGTGGTAATAAAATCATTCTCTCTCCC 59.554 40.741 0.00 0.00 0.00 4.30
853 2280 4.855937 CCAAACATTTTTGTGCCAAAACAC 59.144 37.500 11.20 0.00 40.61 3.32
930 2360 1.137479 GTGAATATCGGTTCCGGGACA 59.863 52.381 16.62 0.00 0.00 4.02
1032 2464 5.839621 TGTCTTAACACTTACAGTCTCACC 58.160 41.667 0.00 0.00 0.00 4.02
1136 2568 7.809806 GTCATAGAAATTGCTGCTTAACTTGTT 59.190 33.333 0.00 0.00 0.00 2.83
1369 2807 0.250038 CCATCACAGCCCTGGATACG 60.250 60.000 0.00 0.00 42.51 3.06
1584 3024 7.175467 ACAAGCTGAATGTATCTGACAAAATGA 59.825 33.333 0.00 0.00 42.78 2.57
1689 3129 0.173708 GATTCGCCTTCAGACCGTCT 59.826 55.000 0.00 0.00 0.00 4.18
1782 3222 1.006571 GTCTTTCGTGTCGAGGCCA 60.007 57.895 5.01 0.00 37.14 5.36
1893 3379 0.747644 TGGCCACACTGTCACTGTTG 60.748 55.000 0.00 0.00 0.00 3.33
1919 3405 4.249661 GCTTCTGCTCTTAGTTAAGCACT 58.750 43.478 0.00 0.00 43.30 4.40
1920 3406 3.997021 TGCTTCTGCTCTTAGTTAAGCAC 59.003 43.478 0.00 0.00 43.30 4.40
1963 3475 3.473923 TGTGACAGTTTGCATGAGAGA 57.526 42.857 0.00 0.00 0.00 3.10
1967 3479 6.817641 AGAAAATTTTGTGACAGTTTGCATGA 59.182 30.769 8.47 0.00 0.00 3.07
2002 3516 5.627182 AAGATCAGGTCAGCTGTATGATT 57.373 39.130 22.68 12.34 30.98 2.57
2484 4036 1.446792 CAGTTGCAGCGGATCTCGT 60.447 57.895 0.00 0.00 41.72 4.18
2690 4253 6.015180 ACAATGATCTTTGCACCATTTACAGT 60.015 34.615 18.52 0.00 0.00 3.55
2716 4279 8.459635 GCATCCTTCGATTCTACATATACTACA 58.540 37.037 0.00 0.00 0.00 2.74
2734 4307 4.708177 ACATACATAGTGTGGCATCCTTC 58.292 43.478 0.00 0.00 0.00 3.46
2751 4324 4.360563 CCGAAGTCACCACTCATACATAC 58.639 47.826 0.00 0.00 29.93 2.39
2752 4325 3.383505 CCCGAAGTCACCACTCATACATA 59.616 47.826 0.00 0.00 29.93 2.29
2753 4326 2.168521 CCCGAAGTCACCACTCATACAT 59.831 50.000 0.00 0.00 29.93 2.29
2754 4327 1.548719 CCCGAAGTCACCACTCATACA 59.451 52.381 0.00 0.00 29.93 2.29
2755 4328 1.549170 ACCCGAAGTCACCACTCATAC 59.451 52.381 0.00 0.00 29.93 2.39
2756 4329 1.548719 CACCCGAAGTCACCACTCATA 59.451 52.381 0.00 0.00 29.93 2.15
2757 4330 0.321671 CACCCGAAGTCACCACTCAT 59.678 55.000 0.00 0.00 29.93 2.90
2758 4331 1.745890 CACCCGAAGTCACCACTCA 59.254 57.895 0.00 0.00 29.93 3.41
2759 4332 1.004918 CCACCCGAAGTCACCACTC 60.005 63.158 0.00 0.00 29.93 3.51
2760 4333 3.148084 CCACCCGAAGTCACCACT 58.852 61.111 0.00 0.00 0.00 4.00
2761 4334 2.668550 GCCACCCGAAGTCACCAC 60.669 66.667 0.00 0.00 0.00 4.16
2762 4335 2.448582 AAGCCACCCGAAGTCACCA 61.449 57.895 0.00 0.00 0.00 4.17
2763 4336 1.966451 CAAGCCACCCGAAGTCACC 60.966 63.158 0.00 0.00 0.00 4.02
2764 4337 0.321653 ATCAAGCCACCCGAAGTCAC 60.322 55.000 0.00 0.00 0.00 3.67
2765 4338 0.321564 CATCAAGCCACCCGAAGTCA 60.322 55.000 0.00 0.00 0.00 3.41
2766 4339 0.321653 ACATCAAGCCACCCGAAGTC 60.322 55.000 0.00 0.00 0.00 3.01
2767 4340 0.981183 TACATCAAGCCACCCGAAGT 59.019 50.000 0.00 0.00 0.00 3.01
2768 4341 1.942657 CATACATCAAGCCACCCGAAG 59.057 52.381 0.00 0.00 0.00 3.79
2769 4342 1.280710 ACATACATCAAGCCACCCGAA 59.719 47.619 0.00 0.00 0.00 4.30
2770 4343 0.908910 ACATACATCAAGCCACCCGA 59.091 50.000 0.00 0.00 0.00 5.14
2771 4344 1.670811 GAACATACATCAAGCCACCCG 59.329 52.381 0.00 0.00 0.00 5.28
2772 4345 3.004752 AGAACATACATCAAGCCACCC 57.995 47.619 0.00 0.00 0.00 4.61
2773 4346 3.758554 ACAAGAACATACATCAAGCCACC 59.241 43.478 0.00 0.00 0.00 4.61
2774 4347 5.376854 AACAAGAACATACATCAAGCCAC 57.623 39.130 0.00 0.00 0.00 5.01
2775 4348 6.472016 TCTAACAAGAACATACATCAAGCCA 58.528 36.000 0.00 0.00 0.00 4.75
2776 4349 6.985188 TCTAACAAGAACATACATCAAGCC 57.015 37.500 0.00 0.00 0.00 4.35
2803 4376 8.020819 CGGCCATCGTTATTTATTATTCAACAT 58.979 33.333 2.24 0.00 0.00 2.71
2804 4377 7.356540 CGGCCATCGTTATTTATTATTCAACA 58.643 34.615 2.24 0.00 0.00 3.33
2805 4378 7.775729 CGGCCATCGTTATTTATTATTCAAC 57.224 36.000 2.24 0.00 0.00 3.18
2821 4394 0.737367 ATCGATGCATACGGCCATCG 60.737 55.000 13.22 13.22 45.94 3.84
2822 4395 1.129251 CAATCGATGCATACGGCCATC 59.871 52.381 2.24 0.00 43.89 3.51
2823 4396 1.159285 CAATCGATGCATACGGCCAT 58.841 50.000 2.24 0.00 43.89 4.40
2824 4397 0.105778 TCAATCGATGCATACGGCCA 59.894 50.000 2.24 0.00 43.89 5.36
2825 4398 1.129251 CATCAATCGATGCATACGGCC 59.871 52.381 15.33 0.00 42.54 6.13
2826 4399 2.515641 CATCAATCGATGCATACGGC 57.484 50.000 15.33 0.00 42.54 5.68
2835 4408 0.602106 CGGCCTCTGCATCAATCGAT 60.602 55.000 0.00 0.00 40.13 3.59
2836 4409 1.227350 CGGCCTCTGCATCAATCGA 60.227 57.895 0.00 0.00 40.13 3.59
2837 4410 2.249535 CCGGCCTCTGCATCAATCG 61.250 63.158 0.00 0.00 40.13 3.34
2838 4411 1.895707 CCCGGCCTCTGCATCAATC 60.896 63.158 0.00 0.00 40.13 2.67
2839 4412 2.194056 CCCGGCCTCTGCATCAAT 59.806 61.111 0.00 0.00 40.13 2.57
2840 4413 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
2846 4419 1.993391 TTAAGACCCCCGGCCTCTG 60.993 63.158 0.00 0.00 0.00 3.35
2847 4420 1.993948 GTTAAGACCCCCGGCCTCT 60.994 63.158 0.00 0.00 0.00 3.69
2848 4421 2.588439 GTTAAGACCCCCGGCCTC 59.412 66.667 0.00 0.00 0.00 4.70
2849 4422 3.013327 GGTTAAGACCCCCGGCCT 61.013 66.667 0.00 0.00 40.25 5.19
2857 4430 5.382616 TCTTTGGAAAAGGAGGTTAAGACC 58.617 41.667 0.20 0.00 46.92 3.85
2858 4431 6.296803 TCTCTTTGGAAAAGGAGGTTAAGAC 58.703 40.000 0.20 0.00 0.00 3.01
2859 4432 6.509523 TCTCTTTGGAAAAGGAGGTTAAGA 57.490 37.500 0.20 0.00 0.00 2.10
2860 4433 7.255625 CCTTTCTCTTTGGAAAAGGAGGTTAAG 60.256 40.741 7.21 0.00 35.22 1.85
2861 4434 6.549736 CCTTTCTCTTTGGAAAAGGAGGTTAA 59.450 38.462 7.21 0.00 35.22 2.01
2862 4435 6.068670 CCTTTCTCTTTGGAAAAGGAGGTTA 58.931 40.000 7.21 0.00 35.22 2.85
2863 4436 4.895889 CCTTTCTCTTTGGAAAAGGAGGTT 59.104 41.667 7.21 0.00 35.22 3.50
2864 4437 4.168088 TCCTTTCTCTTTGGAAAAGGAGGT 59.832 41.667 10.86 0.00 35.22 3.85
2865 4438 4.729868 TCCTTTCTCTTTGGAAAAGGAGG 58.270 43.478 10.86 0.00 35.22 4.30
2866 4439 5.336293 GCATCCTTTCTCTTTGGAAAAGGAG 60.336 44.000 17.77 12.17 36.71 3.69
2867 4440 4.524328 GCATCCTTTCTCTTTGGAAAAGGA 59.476 41.667 15.84 15.84 37.16 3.36
2868 4441 4.322273 GGCATCCTTTCTCTTTGGAAAAGG 60.322 45.833 6.75 6.75 35.22 3.11
2869 4442 4.281688 TGGCATCCTTTCTCTTTGGAAAAG 59.718 41.667 0.00 0.00 35.22 2.27
2870 4443 4.039124 GTGGCATCCTTTCTCTTTGGAAAA 59.961 41.667 0.00 0.00 35.22 2.29
2871 4444 3.573967 GTGGCATCCTTTCTCTTTGGAAA 59.426 43.478 0.00 0.00 33.20 3.13
2872 4445 3.157087 GTGGCATCCTTTCTCTTTGGAA 58.843 45.455 0.00 0.00 33.20 3.53
2873 4446 2.108075 TGTGGCATCCTTTCTCTTTGGA 59.892 45.455 0.00 0.00 0.00 3.53
2874 4447 2.229784 GTGTGGCATCCTTTCTCTTTGG 59.770 50.000 0.00 0.00 0.00 3.28
2875 4448 3.152341 AGTGTGGCATCCTTTCTCTTTG 58.848 45.455 0.00 0.00 0.00 2.77
2876 4449 3.515602 AGTGTGGCATCCTTTCTCTTT 57.484 42.857 0.00 0.00 0.00 2.52
2877 4450 4.327680 GTTAGTGTGGCATCCTTTCTCTT 58.672 43.478 0.00 0.00 0.00 2.85
2878 4451 3.617531 CGTTAGTGTGGCATCCTTTCTCT 60.618 47.826 0.00 0.00 0.00 3.10
2879 4452 2.673368 CGTTAGTGTGGCATCCTTTCTC 59.327 50.000 0.00 0.00 0.00 2.87
2880 4453 2.615493 CCGTTAGTGTGGCATCCTTTCT 60.615 50.000 0.00 0.00 0.00 2.52
2881 4454 1.737793 CCGTTAGTGTGGCATCCTTTC 59.262 52.381 0.00 0.00 0.00 2.62
2882 4455 1.349688 TCCGTTAGTGTGGCATCCTTT 59.650 47.619 0.00 0.00 0.00 3.11
2883 4456 0.981183 TCCGTTAGTGTGGCATCCTT 59.019 50.000 0.00 0.00 0.00 3.36
2884 4457 0.981183 TTCCGTTAGTGTGGCATCCT 59.019 50.000 0.00 0.00 0.00 3.24
2885 4458 1.816074 TTTCCGTTAGTGTGGCATCC 58.184 50.000 0.00 0.00 0.00 3.51
2886 4459 2.747446 ACATTTCCGTTAGTGTGGCATC 59.253 45.455 0.00 0.00 0.00 3.91
2887 4460 2.790433 ACATTTCCGTTAGTGTGGCAT 58.210 42.857 0.00 0.00 0.00 4.40
2888 4461 2.264005 ACATTTCCGTTAGTGTGGCA 57.736 45.000 0.00 0.00 0.00 4.92
2889 4462 3.243267 ACAAACATTTCCGTTAGTGTGGC 60.243 43.478 0.00 0.00 0.00 5.01
2890 4463 4.561735 ACAAACATTTCCGTTAGTGTGG 57.438 40.909 0.00 0.00 0.00 4.17
2891 4464 6.295039 AGTACAAACATTTCCGTTAGTGTG 57.705 37.500 0.00 0.00 0.00 3.82
2892 4465 6.930667 AAGTACAAACATTTCCGTTAGTGT 57.069 33.333 0.00 0.00 0.00 3.55
2893 4466 8.623310 AAAAAGTACAAACATTTCCGTTAGTG 57.377 30.769 0.00 0.00 0.00 2.74
2894 4467 7.916977 GGAAAAAGTACAAACATTTCCGTTAGT 59.083 33.333 0.00 0.00 40.73 2.24
2895 4468 8.277270 GGAAAAAGTACAAACATTTCCGTTAG 57.723 34.615 0.00 0.00 40.73 2.34
2959 4542 9.506018 TTCTATGATTTTGTTGAGTGATGAAGA 57.494 29.630 0.00 0.00 0.00 2.87
3024 4609 4.903054 TGCAAATGCCCAAATATTTGTCA 58.097 34.783 23.24 19.98 43.03 3.58
3031 4616 3.773667 TCAGGAATGCAAATGCCCAAATA 59.226 39.130 2.46 0.00 41.18 1.40
3147 4733 7.767261 AGATTGTTGTGTGCTACTTTTTGTTA 58.233 30.769 0.00 0.00 0.00 2.41
3160 4746 8.935844 TCTTTTAGTATGCTAGATTGTTGTGTG 58.064 33.333 0.00 0.00 0.00 3.82
3161 4747 9.502091 TTCTTTTAGTATGCTAGATTGTTGTGT 57.498 29.630 0.00 0.00 0.00 3.72
3162 4748 9.760660 GTTCTTTTAGTATGCTAGATTGTTGTG 57.239 33.333 0.00 0.00 0.00 3.33
3163 4749 9.726438 AGTTCTTTTAGTATGCTAGATTGTTGT 57.274 29.630 0.00 0.00 0.00 3.32
3173 4759 7.701501 GCGTTCTACTAGTTCTTTTAGTATGCT 59.298 37.037 0.00 0.00 34.19 3.79
3174 4760 7.043524 GGCGTTCTACTAGTTCTTTTAGTATGC 60.044 40.741 0.00 2.16 34.19 3.14
3175 4761 7.434602 GGGCGTTCTACTAGTTCTTTTAGTATG 59.565 40.741 0.00 0.00 34.19 2.39
3176 4762 7.123247 TGGGCGTTCTACTAGTTCTTTTAGTAT 59.877 37.037 0.00 0.00 34.19 2.12
3177 4763 6.434028 TGGGCGTTCTACTAGTTCTTTTAGTA 59.566 38.462 0.00 0.00 33.60 1.82
3178 4764 5.244626 TGGGCGTTCTACTAGTTCTTTTAGT 59.755 40.000 0.00 0.00 35.62 2.24
3179 4765 5.717119 TGGGCGTTCTACTAGTTCTTTTAG 58.283 41.667 0.00 0.00 0.00 1.85
3180 4766 5.726980 TGGGCGTTCTACTAGTTCTTTTA 57.273 39.130 0.00 0.00 0.00 1.52
3181 4767 4.612264 TGGGCGTTCTACTAGTTCTTTT 57.388 40.909 0.00 0.00 0.00 2.27
3182 4768 4.504858 CATGGGCGTTCTACTAGTTCTTT 58.495 43.478 0.00 0.00 0.00 2.52
3183 4769 3.679083 GCATGGGCGTTCTACTAGTTCTT 60.679 47.826 0.00 0.00 0.00 2.52
3184 4770 2.159085 GCATGGGCGTTCTACTAGTTCT 60.159 50.000 0.00 0.00 0.00 3.01
3185 4771 2.202566 GCATGGGCGTTCTACTAGTTC 58.797 52.381 0.00 0.00 0.00 3.01
3186 4772 2.311124 GCATGGGCGTTCTACTAGTT 57.689 50.000 0.00 0.00 0.00 2.24
3206 4792 8.373740 TGTTATATACAAAGAGCCCGTAGCAAC 61.374 40.741 0.00 0.00 37.69 4.17
3207 4793 6.407187 TGTTATATACAAAGAGCCCGTAGCAA 60.407 38.462 0.00 0.00 37.69 3.91
3208 4794 5.069383 TGTTATATACAAAGAGCCCGTAGCA 59.931 40.000 0.00 0.00 37.69 3.49
3209 4795 5.535333 TGTTATATACAAAGAGCCCGTAGC 58.465 41.667 0.00 0.00 36.12 3.58
3285 4871 4.644103 AGTTGGACAATGATGCATAAGC 57.356 40.909 0.00 0.00 42.57 3.09
3286 4872 7.894376 AAAAAGTTGGACAATGATGCATAAG 57.106 32.000 0.00 0.00 0.00 1.73
3308 4894 9.063615 GTGAGAAAGAGGGTCTTTACATAAAAA 57.936 33.333 1.92 0.00 45.85 1.94
3309 4895 8.437575 AGTGAGAAAGAGGGTCTTTACATAAAA 58.562 33.333 1.92 0.00 45.85 1.52
3310 4896 7.974504 AGTGAGAAAGAGGGTCTTTACATAAA 58.025 34.615 1.92 0.00 45.85 1.40
3311 4897 7.455008 AGAGTGAGAAAGAGGGTCTTTACATAA 59.545 37.037 1.92 0.00 45.85 1.90
3312 4898 6.954684 AGAGTGAGAAAGAGGGTCTTTACATA 59.045 38.462 1.92 0.00 45.85 2.29
3313 4899 5.782845 AGAGTGAGAAAGAGGGTCTTTACAT 59.217 40.000 1.92 0.00 45.85 2.29
3314 4900 5.011125 CAGAGTGAGAAAGAGGGTCTTTACA 59.989 44.000 1.92 3.95 45.85 2.41
3315 4901 5.011227 ACAGAGTGAGAAAGAGGGTCTTTAC 59.989 44.000 1.92 0.00 45.85 2.01
3316 4902 5.148502 ACAGAGTGAGAAAGAGGGTCTTTA 58.851 41.667 1.92 0.00 45.85 1.85
3318 4904 3.576550 GACAGAGTGAGAAAGAGGGTCTT 59.423 47.826 0.00 0.00 38.59 3.01
3319 4905 3.161866 GACAGAGTGAGAAAGAGGGTCT 58.838 50.000 0.00 0.00 0.00 3.85
3320 4906 3.161866 AGACAGAGTGAGAAAGAGGGTC 58.838 50.000 0.00 0.00 0.00 4.46
3321 4907 3.161866 GAGACAGAGTGAGAAAGAGGGT 58.838 50.000 0.00 0.00 0.00 4.34
3322 4908 3.430453 AGAGACAGAGTGAGAAAGAGGG 58.570 50.000 0.00 0.00 0.00 4.30
3323 4909 4.078537 TGAGAGACAGAGTGAGAAAGAGG 58.921 47.826 0.00 0.00 0.00 3.69
3324 4910 5.649395 AGATGAGAGACAGAGTGAGAAAGAG 59.351 44.000 0.00 0.00 0.00 2.85
3325 4911 5.569355 AGATGAGAGACAGAGTGAGAAAGA 58.431 41.667 0.00 0.00 0.00 2.52
3326 4912 5.163622 GGAGATGAGAGACAGAGTGAGAAAG 60.164 48.000 0.00 0.00 0.00 2.62
3327 4913 4.704540 GGAGATGAGAGACAGAGTGAGAAA 59.295 45.833 0.00 0.00 0.00 2.52
3328 4914 4.263683 TGGAGATGAGAGACAGAGTGAGAA 60.264 45.833 0.00 0.00 0.00 2.87
3329 4915 3.265479 TGGAGATGAGAGACAGAGTGAGA 59.735 47.826 0.00 0.00 0.00 3.27
3330 4916 3.619419 TGGAGATGAGAGACAGAGTGAG 58.381 50.000 0.00 0.00 0.00 3.51
3331 4917 3.728385 TGGAGATGAGAGACAGAGTGA 57.272 47.619 0.00 0.00 0.00 3.41
3332 4918 3.509184 TGTTGGAGATGAGAGACAGAGTG 59.491 47.826 0.00 0.00 0.00 3.51
3333 4919 3.509575 GTGTTGGAGATGAGAGACAGAGT 59.490 47.826 0.00 0.00 0.00 3.24
3334 4920 3.763360 AGTGTTGGAGATGAGAGACAGAG 59.237 47.826 0.00 0.00 0.00 3.35
3335 4921 3.761218 GAGTGTTGGAGATGAGAGACAGA 59.239 47.826 0.00 0.00 0.00 3.41
3336 4922 3.763360 AGAGTGTTGGAGATGAGAGACAG 59.237 47.826 0.00 0.00 0.00 3.51
3337 4923 3.772387 AGAGTGTTGGAGATGAGAGACA 58.228 45.455 0.00 0.00 0.00 3.41
3338 4924 4.462483 AGAAGAGTGTTGGAGATGAGAGAC 59.538 45.833 0.00 0.00 0.00 3.36
3339 4925 4.671831 AGAAGAGTGTTGGAGATGAGAGA 58.328 43.478 0.00 0.00 0.00 3.10
3340 4926 5.404466 AAGAAGAGTGTTGGAGATGAGAG 57.596 43.478 0.00 0.00 0.00 3.20
3341 4927 5.541868 AGAAAGAAGAGTGTTGGAGATGAGA 59.458 40.000 0.00 0.00 0.00 3.27
3342 4928 5.792741 AGAAAGAAGAGTGTTGGAGATGAG 58.207 41.667 0.00 0.00 0.00 2.90
3343 4929 5.541868 AGAGAAAGAAGAGTGTTGGAGATGA 59.458 40.000 0.00 0.00 0.00 2.92
3344 4930 5.792741 AGAGAAAGAAGAGTGTTGGAGATG 58.207 41.667 0.00 0.00 0.00 2.90
3345 4931 5.779771 AGAGAGAAAGAAGAGTGTTGGAGAT 59.220 40.000 0.00 0.00 0.00 2.75
3346 4932 5.144100 AGAGAGAAAGAAGAGTGTTGGAGA 58.856 41.667 0.00 0.00 0.00 3.71
3347 4933 5.243730 AGAGAGAGAAAGAAGAGTGTTGGAG 59.756 44.000 0.00 0.00 0.00 3.86
3348 4934 5.144100 AGAGAGAGAAAGAAGAGTGTTGGA 58.856 41.667 0.00 0.00 0.00 3.53
3349 4935 5.243730 AGAGAGAGAGAAAGAAGAGTGTTGG 59.756 44.000 0.00 0.00 0.00 3.77
3350 4936 6.207417 AGAGAGAGAGAGAAAGAAGAGTGTTG 59.793 42.308 0.00 0.00 0.00 3.33
3351 4937 6.306987 AGAGAGAGAGAGAAAGAAGAGTGTT 58.693 40.000 0.00 0.00 0.00 3.32
3352 4938 5.880901 AGAGAGAGAGAGAAAGAAGAGTGT 58.119 41.667 0.00 0.00 0.00 3.55
3353 4939 5.355350 GGAGAGAGAGAGAGAAAGAAGAGTG 59.645 48.000 0.00 0.00 0.00 3.51
3354 4940 5.014123 TGGAGAGAGAGAGAGAAAGAAGAGT 59.986 44.000 0.00 0.00 0.00 3.24
3355 4941 5.500234 TGGAGAGAGAGAGAGAAAGAAGAG 58.500 45.833 0.00 0.00 0.00 2.85
3356 4942 5.512942 TGGAGAGAGAGAGAGAAAGAAGA 57.487 43.478 0.00 0.00 0.00 2.87
3357 4943 5.105756 GGTTGGAGAGAGAGAGAGAAAGAAG 60.106 48.000 0.00 0.00 0.00 2.85
3358 4944 4.770010 GGTTGGAGAGAGAGAGAGAAAGAA 59.230 45.833 0.00 0.00 0.00 2.52
3359 4945 4.202620 TGGTTGGAGAGAGAGAGAGAAAGA 60.203 45.833 0.00 0.00 0.00 2.52
3360 4946 4.085733 TGGTTGGAGAGAGAGAGAGAAAG 58.914 47.826 0.00 0.00 0.00 2.62
3361 4947 4.119556 TGGTTGGAGAGAGAGAGAGAAA 57.880 45.455 0.00 0.00 0.00 2.52
3362 4948 3.816398 TGGTTGGAGAGAGAGAGAGAA 57.184 47.619 0.00 0.00 0.00 2.87
3363 4949 4.329638 AATGGTTGGAGAGAGAGAGAGA 57.670 45.455 0.00 0.00 0.00 3.10
3364 4950 5.187576 AGAAAATGGTTGGAGAGAGAGAGAG 59.812 44.000 0.00 0.00 0.00 3.20
3365 4951 5.090139 AGAAAATGGTTGGAGAGAGAGAGA 58.910 41.667 0.00 0.00 0.00 3.10
3366 4952 5.419239 AGAAAATGGTTGGAGAGAGAGAG 57.581 43.478 0.00 0.00 0.00 3.20
3367 4953 5.832539 AAGAAAATGGTTGGAGAGAGAGA 57.167 39.130 0.00 0.00 0.00 3.10
3368 4954 7.609532 ACAATAAGAAAATGGTTGGAGAGAGAG 59.390 37.037 0.00 0.00 0.00 3.20
3369 4955 7.391554 CACAATAAGAAAATGGTTGGAGAGAGA 59.608 37.037 0.00 0.00 0.00 3.10
3370 4956 7.533426 CACAATAAGAAAATGGTTGGAGAGAG 58.467 38.462 0.00 0.00 0.00 3.20
3371 4957 6.071952 GCACAATAAGAAAATGGTTGGAGAGA 60.072 38.462 0.00 0.00 0.00 3.10
3372 4958 6.095377 GCACAATAAGAAAATGGTTGGAGAG 58.905 40.000 0.00 0.00 0.00 3.20
3373 4959 5.047377 GGCACAATAAGAAAATGGTTGGAGA 60.047 40.000 0.00 0.00 0.00 3.71
3374 4960 5.170748 GGCACAATAAGAAAATGGTTGGAG 58.829 41.667 0.00 0.00 0.00 3.86
3375 4961 4.020662 GGGCACAATAAGAAAATGGTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
3376 4962 4.020307 AGGGCACAATAAGAAAATGGTTGG 60.020 41.667 0.00 0.00 0.00 3.77
3377 4963 5.151297 AGGGCACAATAAGAAAATGGTTG 57.849 39.130 0.00 0.00 0.00 3.77
3378 4964 4.837860 TGAGGGCACAATAAGAAAATGGTT 59.162 37.500 0.00 0.00 0.00 3.67
3379 4965 4.415596 TGAGGGCACAATAAGAAAATGGT 58.584 39.130 0.00 0.00 0.00 3.55
3380 4966 5.361857 AGATGAGGGCACAATAAGAAAATGG 59.638 40.000 0.00 0.00 0.00 3.16
3381 4967 6.461110 AGATGAGGGCACAATAAGAAAATG 57.539 37.500 0.00 0.00 0.00 2.32
3382 4968 6.894103 AGAAGATGAGGGCACAATAAGAAAAT 59.106 34.615 0.00 0.00 0.00 1.82
3383 4969 6.248433 AGAAGATGAGGGCACAATAAGAAAA 58.752 36.000 0.00 0.00 0.00 2.29
3384 4970 5.819991 AGAAGATGAGGGCACAATAAGAAA 58.180 37.500 0.00 0.00 0.00 2.52
3385 4971 5.431765 GAGAAGATGAGGGCACAATAAGAA 58.568 41.667 0.00 0.00 0.00 2.52
3386 4972 4.141620 GGAGAAGATGAGGGCACAATAAGA 60.142 45.833 0.00 0.00 0.00 2.10
3387 4973 4.133078 GGAGAAGATGAGGGCACAATAAG 58.867 47.826 0.00 0.00 0.00 1.73
3388 4974 3.523157 TGGAGAAGATGAGGGCACAATAA 59.477 43.478 0.00 0.00 0.00 1.40
3389 4975 3.114606 TGGAGAAGATGAGGGCACAATA 58.885 45.455 0.00 0.00 0.00 1.90
3390 4976 1.918262 TGGAGAAGATGAGGGCACAAT 59.082 47.619 0.00 0.00 0.00 2.71
3391 4977 1.361204 TGGAGAAGATGAGGGCACAA 58.639 50.000 0.00 0.00 0.00 3.33
3392 4978 1.487976 GATGGAGAAGATGAGGGCACA 59.512 52.381 0.00 0.00 0.00 4.57
3393 4979 1.767681 AGATGGAGAAGATGAGGGCAC 59.232 52.381 0.00 0.00 0.00 5.01
3394 4980 2.187239 AGATGGAGAAGATGAGGGCA 57.813 50.000 0.00 0.00 0.00 5.36
3395 4981 2.705127 AGAAGATGGAGAAGATGAGGGC 59.295 50.000 0.00 0.00 0.00 5.19
3396 4982 3.966006 TGAGAAGATGGAGAAGATGAGGG 59.034 47.826 0.00 0.00 0.00 4.30
3397 4983 5.611128 TTGAGAAGATGGAGAAGATGAGG 57.389 43.478 0.00 0.00 0.00 3.86
3398 4984 7.227116 GGAATTTGAGAAGATGGAGAAGATGAG 59.773 40.741 0.00 0.00 0.00 2.90
3399 4985 7.052873 GGAATTTGAGAAGATGGAGAAGATGA 58.947 38.462 0.00 0.00 0.00 2.92
3400 4986 6.262720 GGGAATTTGAGAAGATGGAGAAGATG 59.737 42.308 0.00 0.00 0.00 2.90
3401 4987 6.160105 AGGGAATTTGAGAAGATGGAGAAGAT 59.840 38.462 0.00 0.00 0.00 2.40
3402 4988 5.490357 AGGGAATTTGAGAAGATGGAGAAGA 59.510 40.000 0.00 0.00 0.00 2.87
3403 4989 5.753716 AGGGAATTTGAGAAGATGGAGAAG 58.246 41.667 0.00 0.00 0.00 2.85
3404 4990 5.251468 TGAGGGAATTTGAGAAGATGGAGAA 59.749 40.000 0.00 0.00 0.00 2.87
3405 4991 4.784838 TGAGGGAATTTGAGAAGATGGAGA 59.215 41.667 0.00 0.00 0.00 3.71
3406 4992 5.108187 TGAGGGAATTTGAGAAGATGGAG 57.892 43.478 0.00 0.00 0.00 3.86
3407 4993 5.519183 TTGAGGGAATTTGAGAAGATGGA 57.481 39.130 0.00 0.00 0.00 3.41
3408 4994 5.889853 TGATTGAGGGAATTTGAGAAGATGG 59.110 40.000 0.00 0.00 0.00 3.51
3409 4995 6.602406 ACTGATTGAGGGAATTTGAGAAGATG 59.398 38.462 0.00 0.00 0.00 2.90
3410 4996 6.729428 ACTGATTGAGGGAATTTGAGAAGAT 58.271 36.000 0.00 0.00 0.00 2.40
3411 4997 6.131972 ACTGATTGAGGGAATTTGAGAAGA 57.868 37.500 0.00 0.00 0.00 2.87
3412 4998 6.830873 AACTGATTGAGGGAATTTGAGAAG 57.169 37.500 0.00 0.00 0.00 2.85
3413 4999 8.884124 AATAACTGATTGAGGGAATTTGAGAA 57.116 30.769 0.00 0.00 0.00 2.87
3414 5000 8.884124 AAATAACTGATTGAGGGAATTTGAGA 57.116 30.769 0.00 0.00 0.00 3.27
3419 5005 9.533831 ACACTTAAATAACTGATTGAGGGAATT 57.466 29.630 0.00 0.00 0.00 2.17
3420 5006 9.533831 AACACTTAAATAACTGATTGAGGGAAT 57.466 29.630 0.00 0.00 0.00 3.01
3421 5007 8.934023 AACACTTAAATAACTGATTGAGGGAA 57.066 30.769 0.00 0.00 0.00 3.97
3422 5008 7.333423 CGAACACTTAAATAACTGATTGAGGGA 59.667 37.037 0.00 0.00 0.00 4.20
3423 5009 7.333423 TCGAACACTTAAATAACTGATTGAGGG 59.667 37.037 0.00 0.00 0.00 4.30
3424 5010 8.169268 GTCGAACACTTAAATAACTGATTGAGG 58.831 37.037 0.00 0.00 0.00 3.86
3425 5011 8.926710 AGTCGAACACTTAAATAACTGATTGAG 58.073 33.333 0.00 0.00 26.56 3.02
3426 5012 8.827177 AGTCGAACACTTAAATAACTGATTGA 57.173 30.769 0.00 0.00 26.56 2.57
3472 5058 8.821894 GCTCTTAGTCCTGAAAATATTACACTG 58.178 37.037 0.00 0.00 0.00 3.66
3473 5059 8.540388 TGCTCTTAGTCCTGAAAATATTACACT 58.460 33.333 0.00 0.00 0.00 3.55
3474 5060 8.718102 TGCTCTTAGTCCTGAAAATATTACAC 57.282 34.615 0.00 0.00 0.00 2.90
3475 5061 9.547753 GATGCTCTTAGTCCTGAAAATATTACA 57.452 33.333 0.00 0.00 0.00 2.41
3476 5062 9.771534 AGATGCTCTTAGTCCTGAAAATATTAC 57.228 33.333 0.00 0.00 0.00 1.89
3478 5064 9.336171 GAAGATGCTCTTAGTCCTGAAAATATT 57.664 33.333 0.00 0.00 36.73 1.28
3479 5065 8.489489 TGAAGATGCTCTTAGTCCTGAAAATAT 58.511 33.333 0.00 0.00 36.73 1.28
3480 5066 7.851228 TGAAGATGCTCTTAGTCCTGAAAATA 58.149 34.615 0.00 0.00 36.73 1.40
3481 5067 6.715280 TGAAGATGCTCTTAGTCCTGAAAAT 58.285 36.000 0.00 0.00 36.73 1.82
3482 5068 6.114187 TGAAGATGCTCTTAGTCCTGAAAA 57.886 37.500 0.00 0.00 36.73 2.29
3483 5069 5.745312 TGAAGATGCTCTTAGTCCTGAAA 57.255 39.130 0.00 0.00 36.73 2.69
3484 5070 5.745312 TTGAAGATGCTCTTAGTCCTGAA 57.255 39.130 0.00 0.00 36.73 3.02
3485 5071 5.946942 ATTGAAGATGCTCTTAGTCCTGA 57.053 39.130 0.00 0.00 36.73 3.86
3486 5072 6.922957 GTCTATTGAAGATGCTCTTAGTCCTG 59.077 42.308 0.00 0.00 36.73 3.86
3487 5073 6.238897 CGTCTATTGAAGATGCTCTTAGTCCT 60.239 42.308 0.00 0.00 36.73 3.85
3488 5074 5.918011 CGTCTATTGAAGATGCTCTTAGTCC 59.082 44.000 0.00 0.00 36.73 3.85
3489 5075 5.918011 CCGTCTATTGAAGATGCTCTTAGTC 59.082 44.000 0.00 0.00 39.56 2.59
3490 5076 5.361285 ACCGTCTATTGAAGATGCTCTTAGT 59.639 40.000 0.00 0.00 39.56 2.24
3491 5077 5.837437 ACCGTCTATTGAAGATGCTCTTAG 58.163 41.667 0.00 0.00 39.56 2.18
3492 5078 5.854010 ACCGTCTATTGAAGATGCTCTTA 57.146 39.130 0.00 0.00 39.56 2.10
3493 5079 4.744795 ACCGTCTATTGAAGATGCTCTT 57.255 40.909 0.00 0.00 39.56 2.85
3494 5080 4.160439 TGAACCGTCTATTGAAGATGCTCT 59.840 41.667 0.00 0.00 39.56 4.09
3495 5081 4.433615 TGAACCGTCTATTGAAGATGCTC 58.566 43.478 0.00 0.00 39.56 4.26
3496 5082 4.471904 TGAACCGTCTATTGAAGATGCT 57.528 40.909 0.00 0.00 39.56 3.79
3497 5083 6.425114 ACATATGAACCGTCTATTGAAGATGC 59.575 38.462 10.38 0.00 39.56 3.91
3498 5084 7.953158 ACATATGAACCGTCTATTGAAGATG 57.047 36.000 10.38 0.00 40.44 2.90
3500 5086 9.878667 TTTTACATATGAACCGTCTATTGAAGA 57.121 29.630 10.38 0.00 0.00 2.87
3507 5093 9.887629 TGGTTATTTTTACATATGAACCGTCTA 57.112 29.630 10.38 0.00 38.13 2.59
3508 5094 8.795842 TGGTTATTTTTACATATGAACCGTCT 57.204 30.769 10.38 0.00 38.13 4.18
3509 5095 9.281075 GTTGGTTATTTTTACATATGAACCGTC 57.719 33.333 10.38 4.65 38.13 4.79
3510 5096 9.016438 AGTTGGTTATTTTTACATATGAACCGT 57.984 29.630 10.38 0.00 38.13 4.83
3511 5097 9.849166 AAGTTGGTTATTTTTACATATGAACCG 57.151 29.630 10.38 0.00 38.13 4.44
3525 5111 9.971922 CTCAGAAGATTCAAAAGTTGGTTATTT 57.028 29.630 0.00 0.00 0.00 1.40
3526 5112 8.579863 CCTCAGAAGATTCAAAAGTTGGTTATT 58.420 33.333 0.00 0.00 0.00 1.40
3527 5113 7.309438 GCCTCAGAAGATTCAAAAGTTGGTTAT 60.309 37.037 0.00 0.00 0.00 1.89
3528 5114 6.016276 GCCTCAGAAGATTCAAAAGTTGGTTA 60.016 38.462 0.00 0.00 0.00 2.85
3529 5115 5.221322 GCCTCAGAAGATTCAAAAGTTGGTT 60.221 40.000 0.00 0.00 0.00 3.67
3530 5116 4.279420 GCCTCAGAAGATTCAAAAGTTGGT 59.721 41.667 0.00 0.00 0.00 3.67
3531 5117 4.279169 TGCCTCAGAAGATTCAAAAGTTGG 59.721 41.667 0.00 0.00 0.00 3.77
3532 5118 5.443185 TGCCTCAGAAGATTCAAAAGTTG 57.557 39.130 0.00 0.00 0.00 3.16
3533 5119 6.469782 TTTGCCTCAGAAGATTCAAAAGTT 57.530 33.333 0.00 0.00 0.00 2.66
3534 5120 6.469782 TTTTGCCTCAGAAGATTCAAAAGT 57.530 33.333 0.00 0.00 33.69 2.66
3568 5154 4.987408 TTTGCATATGGACCATCTGTTG 57.013 40.909 11.17 6.29 0.00 3.33
3569 5155 5.999205 TTTTTGCATATGGACCATCTGTT 57.001 34.783 11.17 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.