Multiple sequence alignment - TraesCS1D01G096100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G096100 chr1D 100.000 3053 0 0 1 3053 81296796 81293744 0.000000e+00 5638.0
1 TraesCS1D01G096100 chr1D 92.828 488 26 6 2225 2712 81180125 81179647 0.000000e+00 699.0
2 TraesCS1D01G096100 chr1D 91.129 496 26 11 2225 2712 81183890 81183405 0.000000e+00 656.0
3 TraesCS1D01G096100 chr1D 89.964 279 17 8 2712 2990 81179560 81179293 1.740000e-92 350.0
4 TraesCS1D01G096100 chr1D 97.423 194 4 1 1 193 81328025 81327832 2.270000e-86 329.0
5 TraesCS1D01G096100 chr1D 82.353 289 28 13 2709 2990 81183321 81183049 2.370000e-56 230.0
6 TraesCS1D01G096100 chr1D 96.552 58 1 1 2996 3053 303327883 303327939 9.010000e-16 95.3
7 TraesCS1D01G096100 chr1B 96.725 1313 35 4 1700 3004 134577705 134576393 0.000000e+00 2180.0
8 TraesCS1D01G096100 chr1B 98.565 906 10 3 2100 3005 134647492 134646590 0.000000e+00 1598.0
9 TraesCS1D01G096100 chr1B 91.392 790 41 3 1829 2618 134456601 134455839 0.000000e+00 1057.0
10 TraesCS1D01G096100 chr1B 92.235 631 29 10 194 821 134675061 134674448 0.000000e+00 876.0
11 TraesCS1D01G096100 chr1B 96.097 538 15 3 820 1356 134674286 134673754 0.000000e+00 872.0
12 TraesCS1D01G096100 chr1B 96.674 481 15 1 1354 1833 134667258 134666778 0.000000e+00 798.0
13 TraesCS1D01G096100 chr1B 92.008 488 29 7 2225 2712 134439233 134438756 0.000000e+00 676.0
14 TraesCS1D01G096100 chr1B 92.008 488 29 7 2225 2712 134451607 134451130 0.000000e+00 676.0
15 TraesCS1D01G096100 chr1B 97.535 284 7 0 1824 2107 134649229 134648946 1.270000e-133 486.0
16 TraesCS1D01G096100 chr1B 90.391 281 15 9 2712 2992 134438669 134438401 2.890000e-95 359.0
17 TraesCS1D01G096100 chr1B 90.036 281 16 9 2712 2992 134451043 134450775 1.350000e-93 353.0
18 TraesCS1D01G096100 chr1B 85.714 217 20 4 2709 2924 134453187 134452981 5.130000e-53 219.0
19 TraesCS1D01G096100 chr1A 94.504 1019 44 5 1700 2712 99908338 99907326 0.000000e+00 1561.0
20 TraesCS1D01G096100 chr1A 92.832 279 17 3 2712 2990 99907239 99906964 4.740000e-108 401.0
21 TraesCS1D01G096100 chr1A 91.954 87 5 2 194 278 98574358 98574444 1.490000e-23 121.0
22 TraesCS1D01G096100 chr1A 90.698 86 5 3 195 278 516060604 516060520 8.950000e-21 111.0
23 TraesCS1D01G096100 chr6D 96.954 197 5 1 1 196 244829510 244829314 2.270000e-86 329.0
24 TraesCS1D01G096100 chr6D 97.423 194 4 1 1 193 252965455 252965262 2.270000e-86 329.0
25 TraesCS1D01G096100 chr6D 98.214 56 1 0 2998 3053 32870154 32870099 6.970000e-17 99.0
26 TraesCS1D01G096100 chr5D 97.423 194 4 1 1 193 234571620 234571427 2.270000e-86 329.0
27 TraesCS1D01G096100 chr5D 98.214 56 0 1 2998 3053 168505473 168505419 2.510000e-16 97.1
28 TraesCS1D01G096100 chr5D 96.552 58 0 1 2998 3053 198468985 198469042 9.010000e-16 95.3
29 TraesCS1D01G096100 chr4D 97.423 194 4 1 1 193 314260593 314260786 2.270000e-86 329.0
30 TraesCS1D01G096100 chr4D 94.737 209 9 2 1 207 506516484 506516276 1.060000e-84 324.0
31 TraesCS1D01G096100 chr4D 93.119 218 11 3 1 217 351435111 351434897 1.770000e-82 316.0
32 TraesCS1D01G096100 chr4D 98.214 56 0 1 2998 3053 329868065 329868119 2.510000e-16 97.1
33 TraesCS1D01G096100 chr2D 96.954 197 5 1 1 196 196281129 196281325 2.270000e-86 329.0
34 TraesCS1D01G096100 chr2D 96.040 202 5 3 1 200 257636375 257636175 2.940000e-85 326.0
35 TraesCS1D01G096100 chr2D 91.954 87 5 2 194 278 88316458 88316544 1.490000e-23 121.0
36 TraesCS1D01G096100 chr2D 100.000 53 0 0 3001 3053 204397467 204397415 6.970000e-17 99.0
37 TraesCS1D01G096100 chr2D 98.214 56 0 1 2998 3053 381301780 381301834 2.510000e-16 97.1
38 TraesCS1D01G096100 chr2A 93.182 88 4 2 194 279 132225192 132225105 8.880000e-26 128.0
39 TraesCS1D01G096100 chr4B 91.011 89 5 3 194 280 448306505 448306418 1.920000e-22 117.0
40 TraesCS1D01G096100 chr5A 90.805 87 6 2 194 279 554860841 554860756 6.920000e-22 115.0
41 TraesCS1D01G096100 chr3D 90.805 87 6 2 194 279 121240419 121240504 6.920000e-22 115.0
42 TraesCS1D01G096100 chr5B 90.698 86 7 1 194 278 682695463 682695378 2.490000e-21 113.0
43 TraesCS1D01G096100 chrUn 95.238 63 1 2 2992 3053 87953787 87953848 6.970000e-17 99.0
44 TraesCS1D01G096100 chr6B 95.082 61 1 2 2994 3053 204467558 204467499 9.010000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G096100 chr1D 81293744 81296796 3052 True 5638.00 5638 100.0000 1 3053 1 chr1D.!!$R1 3052
1 TraesCS1D01G096100 chr1D 81179293 81183890 4597 True 483.75 699 89.0685 2225 2990 4 chr1D.!!$R3 765
2 TraesCS1D01G096100 chr1B 134576393 134577705 1312 True 2180.00 2180 96.7250 1700 3004 1 chr1B.!!$R1 1304
3 TraesCS1D01G096100 chr1B 134646590 134649229 2639 True 1042.00 1598 98.0500 1824 3005 2 chr1B.!!$R5 1181
4 TraesCS1D01G096100 chr1B 134673754 134675061 1307 True 874.00 876 94.1660 194 1356 2 chr1B.!!$R6 1162
5 TraesCS1D01G096100 chr1B 134450775 134456601 5826 True 576.25 1057 89.7875 1829 2992 4 chr1B.!!$R4 1163
6 TraesCS1D01G096100 chr1B 134438401 134439233 832 True 517.50 676 91.1995 2225 2992 2 chr1B.!!$R3 767
7 TraesCS1D01G096100 chr1A 99906964 99908338 1374 True 981.00 1561 93.6680 1700 2990 2 chr1A.!!$R2 1290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1065 0.392595 AACCCTAGCAAAGCGGTAGC 60.393 55.0 4.01 4.01 43.17 3.58 F
1490 1660 0.107831 GCCCCAAAGTTTGTTTCCCC 59.892 55.0 14.36 0.00 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2078 0.962356 ATGCCTTCTTCAGCCCAACG 60.962 55.000 0.00 0.0 0.00 4.10 R
3019 11353 1.922447 TGGCCTCATGGGAATACAAGT 59.078 47.619 3.32 0.0 37.23 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.878317 TCAAAGTCTTCAGAAAGTCTTCAGA 58.122 36.000 0.00 0.00 39.11 3.27
25 26 7.331026 TCAAAGTCTTCAGAAAGTCTTCAGAA 58.669 34.615 0.00 0.00 39.11 3.02
26 27 7.824289 TCAAAGTCTTCAGAAAGTCTTCAGAAA 59.176 33.333 0.00 0.00 39.11 2.52
27 28 8.619546 CAAAGTCTTCAGAAAGTCTTCAGAAAT 58.380 33.333 0.00 0.00 39.11 2.17
28 29 8.744568 AAGTCTTCAGAAAGTCTTCAGAAATT 57.255 30.769 0.00 0.00 36.53 1.82
29 30 8.376889 AGTCTTCAGAAAGTCTTCAGAAATTC 57.623 34.615 0.00 0.00 36.84 2.17
30 31 7.989741 AGTCTTCAGAAAGTCTTCAGAAATTCA 59.010 33.333 0.00 0.00 36.84 2.57
31 32 8.616076 GTCTTCAGAAAGTCTTCAGAAATTCAA 58.384 33.333 0.00 0.00 36.84 2.69
32 33 9.177608 TCTTCAGAAAGTCTTCAGAAATTCAAA 57.822 29.630 0.00 0.00 36.84 2.69
33 34 9.448294 CTTCAGAAAGTCTTCAGAAATTCAAAG 57.552 33.333 0.00 0.00 36.84 2.77
34 35 8.511604 TCAGAAAGTCTTCAGAAATTCAAAGT 57.488 30.769 0.00 0.00 33.64 2.66
35 36 8.616076 TCAGAAAGTCTTCAGAAATTCAAAGTC 58.384 33.333 0.00 0.00 33.64 3.01
36 37 8.619546 CAGAAAGTCTTCAGAAATTCAAAGTCT 58.380 33.333 0.00 0.00 33.64 3.24
37 38 9.183368 AGAAAGTCTTCAGAAATTCAAAGTCTT 57.817 29.630 11.59 11.59 33.64 3.01
38 39 9.444534 GAAAGTCTTCAGAAATTCAAAGTCTTC 57.555 33.333 15.09 9.86 30.45 2.87
39 40 8.511604 AAGTCTTCAGAAATTCAAAGTCTTCA 57.488 30.769 11.59 0.00 0.00 3.02
40 41 8.152309 AGTCTTCAGAAATTCAAAGTCTTCAG 57.848 34.615 0.00 0.00 0.00 3.02
41 42 7.772757 AGTCTTCAGAAATTCAAAGTCTTCAGT 59.227 33.333 0.00 0.00 0.00 3.41
42 43 8.067189 GTCTTCAGAAATTCAAAGTCTTCAGTC 58.933 37.037 0.00 0.00 0.00 3.51
43 44 6.530913 TCAGAAATTCAAAGTCTTCAGTCG 57.469 37.500 0.00 0.00 0.00 4.18
44 45 6.280643 TCAGAAATTCAAAGTCTTCAGTCGA 58.719 36.000 0.00 0.00 0.00 4.20
45 46 6.761242 TCAGAAATTCAAAGTCTTCAGTCGAA 59.239 34.615 0.00 0.00 0.00 3.71
61 62 7.421530 TCAGTCGAAGAACTTCATTTTTAGG 57.578 36.000 13.72 0.00 39.69 2.69
62 63 6.426937 TCAGTCGAAGAACTTCATTTTTAGGG 59.573 38.462 13.72 0.00 39.69 3.53
63 64 5.705905 AGTCGAAGAACTTCATTTTTAGGGG 59.294 40.000 13.72 0.00 39.69 4.79
64 65 5.472478 GTCGAAGAACTTCATTTTTAGGGGT 59.528 40.000 13.72 0.00 39.69 4.95
65 66 5.704053 TCGAAGAACTTCATTTTTAGGGGTC 59.296 40.000 13.72 0.00 39.46 4.46
66 67 5.390567 CGAAGAACTTCATTTTTAGGGGTCG 60.391 44.000 13.72 0.00 39.46 4.79
67 68 5.237236 AGAACTTCATTTTTAGGGGTCGA 57.763 39.130 0.00 0.00 0.00 4.20
68 69 5.001874 AGAACTTCATTTTTAGGGGTCGAC 58.998 41.667 7.13 7.13 0.00 4.20
69 70 4.635699 ACTTCATTTTTAGGGGTCGACT 57.364 40.909 16.46 0.00 0.00 4.18
70 71 4.981812 ACTTCATTTTTAGGGGTCGACTT 58.018 39.130 16.46 4.32 0.00 3.01
71 72 5.001874 ACTTCATTTTTAGGGGTCGACTTC 58.998 41.667 16.46 8.15 0.00 3.01
72 73 4.903045 TCATTTTTAGGGGTCGACTTCT 57.097 40.909 16.46 14.82 0.00 2.85
73 74 4.828829 TCATTTTTAGGGGTCGACTTCTC 58.171 43.478 16.46 0.00 0.00 2.87
74 75 4.530946 TCATTTTTAGGGGTCGACTTCTCT 59.469 41.667 16.46 7.50 0.00 3.10
75 76 3.955650 TTTTAGGGGTCGACTTCTCTG 57.044 47.619 16.46 0.00 0.00 3.35
76 77 2.599408 TTAGGGGTCGACTTCTCTGT 57.401 50.000 16.46 0.00 0.00 3.41
77 78 3.726557 TTAGGGGTCGACTTCTCTGTA 57.273 47.619 16.46 0.00 0.00 2.74
78 79 2.599408 AGGGGTCGACTTCTCTGTAA 57.401 50.000 16.46 0.00 0.00 2.41
79 80 2.885616 AGGGGTCGACTTCTCTGTAAA 58.114 47.619 16.46 0.00 0.00 2.01
80 81 3.442076 AGGGGTCGACTTCTCTGTAAAT 58.558 45.455 16.46 0.00 0.00 1.40
81 82 4.607239 AGGGGTCGACTTCTCTGTAAATA 58.393 43.478 16.46 0.00 0.00 1.40
82 83 5.209659 AGGGGTCGACTTCTCTGTAAATAT 58.790 41.667 16.46 0.00 0.00 1.28
83 84 5.302313 AGGGGTCGACTTCTCTGTAAATATC 59.698 44.000 16.46 0.00 0.00 1.63
84 85 5.068723 GGGGTCGACTTCTCTGTAAATATCA 59.931 44.000 16.46 0.00 0.00 2.15
85 86 6.406624 GGGGTCGACTTCTCTGTAAATATCAA 60.407 42.308 16.46 0.00 0.00 2.57
86 87 7.039882 GGGTCGACTTCTCTGTAAATATCAAA 58.960 38.462 16.46 0.00 0.00 2.69
87 88 7.010275 GGGTCGACTTCTCTGTAAATATCAAAC 59.990 40.741 16.46 0.00 0.00 2.93
88 89 7.760340 GGTCGACTTCTCTGTAAATATCAAACT 59.240 37.037 16.46 0.00 0.00 2.66
89 90 8.800031 GTCGACTTCTCTGTAAATATCAAACTC 58.200 37.037 8.70 0.00 0.00 3.01
90 91 7.974501 TCGACTTCTCTGTAAATATCAAACTCC 59.025 37.037 0.00 0.00 0.00 3.85
91 92 7.976734 CGACTTCTCTGTAAATATCAAACTCCT 59.023 37.037 0.00 0.00 0.00 3.69
92 93 9.308318 GACTTCTCTGTAAATATCAAACTCCTC 57.692 37.037 0.00 0.00 0.00 3.71
93 94 8.816894 ACTTCTCTGTAAATATCAAACTCCTCA 58.183 33.333 0.00 0.00 0.00 3.86
94 95 9.829507 CTTCTCTGTAAATATCAAACTCCTCAT 57.170 33.333 0.00 0.00 0.00 2.90
107 108 8.466617 TCAAACTCCTCATAGACTTATAGTCC 57.533 38.462 3.33 0.00 46.18 3.85
108 109 8.282982 TCAAACTCCTCATAGACTTATAGTCCT 58.717 37.037 3.33 0.00 46.18 3.85
109 110 8.356657 CAAACTCCTCATAGACTTATAGTCCTG 58.643 40.741 3.33 2.75 46.18 3.86
110 111 7.156694 ACTCCTCATAGACTTATAGTCCTGT 57.843 40.000 3.33 0.00 46.18 4.00
111 112 7.001674 ACTCCTCATAGACTTATAGTCCTGTG 58.998 42.308 3.33 3.62 46.18 3.66
112 113 6.912426 TCCTCATAGACTTATAGTCCTGTGT 58.088 40.000 3.33 0.00 46.18 3.72
113 114 8.042286 TCCTCATAGACTTATAGTCCTGTGTA 57.958 38.462 3.33 0.00 46.18 2.90
114 115 7.937942 TCCTCATAGACTTATAGTCCTGTGTAC 59.062 40.741 3.33 0.00 46.18 2.90
115 116 7.720074 CCTCATAGACTTATAGTCCTGTGTACA 59.280 40.741 3.33 0.00 46.18 2.90
116 117 8.447924 TCATAGACTTATAGTCCTGTGTACAC 57.552 38.462 19.36 19.36 46.18 2.90
117 118 8.272889 TCATAGACTTATAGTCCTGTGTACACT 58.727 37.037 25.60 8.63 46.18 3.55
118 119 8.561212 CATAGACTTATAGTCCTGTGTACACTC 58.439 40.741 25.60 10.81 46.18 3.51
119 120 6.482524 AGACTTATAGTCCTGTGTACACTCA 58.517 40.000 25.60 6.77 46.18 3.41
120 121 7.120051 AGACTTATAGTCCTGTGTACACTCAT 58.880 38.462 25.60 12.02 46.18 2.90
121 122 8.272889 AGACTTATAGTCCTGTGTACACTCATA 58.727 37.037 25.60 12.12 46.18 2.15
122 123 8.818622 ACTTATAGTCCTGTGTACACTCATAA 57.181 34.615 25.60 16.38 0.00 1.90
123 124 9.251440 ACTTATAGTCCTGTGTACACTCATAAA 57.749 33.333 25.60 8.96 0.00 1.40
126 127 5.178797 AGTCCTGTGTACACTCATAAATGC 58.821 41.667 25.60 7.40 0.00 3.56
127 128 4.935205 GTCCTGTGTACACTCATAAATGCA 59.065 41.667 25.60 1.63 0.00 3.96
128 129 5.586243 GTCCTGTGTACACTCATAAATGCAT 59.414 40.000 25.60 0.00 0.00 3.96
129 130 6.094048 GTCCTGTGTACACTCATAAATGCATT 59.906 38.462 25.60 5.99 0.00 3.56
130 131 7.279981 GTCCTGTGTACACTCATAAATGCATTA 59.720 37.037 25.60 1.72 0.00 1.90
131 132 7.495606 TCCTGTGTACACTCATAAATGCATTAG 59.504 37.037 25.60 8.87 0.00 1.73
132 133 7.495606 CCTGTGTACACTCATAAATGCATTAGA 59.504 37.037 25.60 10.28 0.00 2.10
133 134 8.962884 TGTGTACACTCATAAATGCATTAGAT 57.037 30.769 25.60 6.65 0.00 1.98
134 135 9.045223 TGTGTACACTCATAAATGCATTAGATC 57.955 33.333 25.60 1.64 0.00 2.75
135 136 8.499162 GTGTACACTCATAAATGCATTAGATCC 58.501 37.037 18.92 0.00 0.00 3.36
136 137 8.432013 TGTACACTCATAAATGCATTAGATCCT 58.568 33.333 13.39 0.00 0.00 3.24
137 138 9.277783 GTACACTCATAAATGCATTAGATCCTT 57.722 33.333 13.39 0.00 0.00 3.36
139 140 9.851686 ACACTCATAAATGCATTAGATCCTTAA 57.148 29.630 13.39 0.00 0.00 1.85
141 142 9.289782 ACTCATAAATGCATTAGATCCTTAACC 57.710 33.333 13.39 0.00 0.00 2.85
142 143 9.512588 CTCATAAATGCATTAGATCCTTAACCT 57.487 33.333 13.39 0.00 0.00 3.50
150 151 9.381038 TGCATTAGATCCTTAACCTATAAGTCT 57.619 33.333 0.00 0.00 0.00 3.24
160 161 9.543783 CCTTAACCTATAAGTCTTCAATACACC 57.456 37.037 0.00 0.00 0.00 4.16
164 165 9.802039 AACCTATAAGTCTTCAATACACCAAAA 57.198 29.630 0.00 0.00 0.00 2.44
165 166 9.975218 ACCTATAAGTCTTCAATACACCAAAAT 57.025 29.630 0.00 0.00 0.00 1.82
169 170 7.823745 AAGTCTTCAATACACCAAAATCACT 57.176 32.000 0.00 0.00 0.00 3.41
170 171 8.918202 AAGTCTTCAATACACCAAAATCACTA 57.082 30.769 0.00 0.00 0.00 2.74
171 172 8.918202 AGTCTTCAATACACCAAAATCACTAA 57.082 30.769 0.00 0.00 0.00 2.24
172 173 9.003658 AGTCTTCAATACACCAAAATCACTAAG 57.996 33.333 0.00 0.00 0.00 2.18
173 174 8.237267 GTCTTCAATACACCAAAATCACTAAGG 58.763 37.037 0.00 0.00 0.00 2.69
174 175 7.393234 TCTTCAATACACCAAAATCACTAAGGG 59.607 37.037 0.00 0.00 0.00 3.95
175 176 5.949354 TCAATACACCAAAATCACTAAGGGG 59.051 40.000 0.00 0.00 0.00 4.79
176 177 2.525368 ACACCAAAATCACTAAGGGGC 58.475 47.619 0.00 0.00 0.00 5.80
177 178 2.158385 ACACCAAAATCACTAAGGGGCA 60.158 45.455 0.00 0.00 0.00 5.36
178 179 2.231235 CACCAAAATCACTAAGGGGCAC 59.769 50.000 0.00 0.00 0.00 5.01
179 180 2.110011 ACCAAAATCACTAAGGGGCACT 59.890 45.455 0.00 0.00 0.00 4.40
180 181 3.332485 ACCAAAATCACTAAGGGGCACTA 59.668 43.478 0.00 0.00 0.00 2.74
181 182 3.947834 CCAAAATCACTAAGGGGCACTAG 59.052 47.826 0.00 0.00 0.00 2.57
182 183 4.324254 CCAAAATCACTAAGGGGCACTAGA 60.324 45.833 0.00 0.00 0.00 2.43
183 184 5.440610 CAAAATCACTAAGGGGCACTAGAT 58.559 41.667 0.00 0.00 0.00 1.98
184 185 4.696479 AATCACTAAGGGGCACTAGATG 57.304 45.455 0.00 0.00 0.00 2.90
342 344 0.601841 GGTTCAAAGACCCGCTTCGA 60.602 55.000 0.00 0.00 35.24 3.71
362 364 1.981256 TGGTGGAAACTCTTTGCCTC 58.019 50.000 0.00 0.00 0.00 4.70
386 388 3.089788 GGTTGGACCAACTGACGTT 57.910 52.632 31.29 0.00 43.14 3.99
394 396 1.440850 CAACTGACGTTGGCATGCG 60.441 57.895 12.44 9.83 45.28 4.73
414 416 3.802948 GGAGAGCGATTACTCCTTGAA 57.197 47.619 0.00 0.00 46.28 2.69
443 445 1.345415 CTTGGAGCATTGCACCCTTTT 59.655 47.619 20.44 0.00 38.50 2.27
462 464 6.015180 CCCTTTTTGTGGGGATATATCACATG 60.015 42.308 16.75 0.00 45.18 3.21
493 495 4.299978 GTGGGATTTAGAGATACTGTCGC 58.700 47.826 0.00 0.00 0.00 5.19
507 509 2.150837 GTCGCGAGGCTTGTCGTAC 61.151 63.158 10.24 10.03 42.17 3.67
533 535 6.703319 TGAATGACCTCCAATCGTTTAACTA 58.297 36.000 0.00 0.00 0.00 2.24
570 572 0.963962 TAGTTGAGGAGCGGTCGTTT 59.036 50.000 11.52 0.00 0.00 3.60
578 580 1.287425 GAGCGGTCGTTTGGGATTAG 58.713 55.000 0.00 0.00 0.00 1.73
623 625 9.149225 TGTTTGGCATCATCAATGTTTAATAAC 57.851 29.630 0.00 0.00 37.71 1.89
687 692 3.703001 AAAAAGAAGAGATGGAGCGGA 57.297 42.857 0.00 0.00 0.00 5.54
688 693 3.922171 AAAAGAAGAGATGGAGCGGAT 57.078 42.857 0.00 0.00 0.00 4.18
689 694 3.922171 AAAGAAGAGATGGAGCGGATT 57.078 42.857 0.00 0.00 0.00 3.01
690 695 3.922171 AAGAAGAGATGGAGCGGATTT 57.078 42.857 0.00 0.00 0.00 2.17
691 696 3.922171 AGAAGAGATGGAGCGGATTTT 57.078 42.857 0.00 0.00 0.00 1.82
692 697 4.227864 AGAAGAGATGGAGCGGATTTTT 57.772 40.909 0.00 0.00 0.00 1.94
714 719 2.091885 TCCCCAAGATCACCATAAAGGC 60.092 50.000 0.00 0.00 43.14 4.35
789 795 4.689345 CCCAAGAGTCCAGTAAAAGTTACG 59.311 45.833 0.00 0.00 0.00 3.18
809 815 2.302157 CGTGTTCTTCTTCCCTAAGGGT 59.698 50.000 0.00 0.00 44.74 4.34
810 816 3.676093 GTGTTCTTCTTCCCTAAGGGTG 58.324 50.000 0.00 0.00 44.74 4.61
865 1034 3.631250 TCCATGCCCTGTCCTAAAAATC 58.369 45.455 0.00 0.00 0.00 2.17
878 1047 1.243902 AAAAATCTCCGGCGCTTGAA 58.756 45.000 7.64 0.00 0.00 2.69
896 1065 0.392595 AACCCTAGCAAAGCGGTAGC 60.393 55.000 4.01 4.01 43.17 3.58
920 1090 3.677148 GCAGCAAATCCCTCCTAAAAAGC 60.677 47.826 0.00 0.00 0.00 3.51
950 1120 2.297597 CGGAGACAGAGGAGACAAAGTT 59.702 50.000 0.00 0.00 0.00 2.66
1116 1286 2.105993 ACCCCTTAAGTCACACCAGTTC 59.894 50.000 0.97 0.00 0.00 3.01
1192 1362 1.305297 TCAGCGGATCACCTGTCCT 60.305 57.895 10.50 0.00 33.46 3.85
1250 1420 4.389576 GGTGAAAGCGCGCCACAG 62.390 66.667 30.57 0.00 38.32 3.66
1328 1498 0.440371 GCAGCTGTGAAGAACTACGC 59.560 55.000 16.64 0.00 0.00 4.42
1356 1526 0.610232 CTGGCTGGGGGACTTCAAAG 60.610 60.000 0.00 0.00 0.00 2.77
1357 1527 1.360393 TGGCTGGGGGACTTCAAAGT 61.360 55.000 0.00 0.00 43.16 2.66
1358 1528 0.178961 GGCTGGGGGACTTCAAAGTT 60.179 55.000 0.00 0.00 39.88 2.66
1359 1529 1.248486 GCTGGGGGACTTCAAAGTTC 58.752 55.000 0.00 0.00 39.88 3.01
1360 1530 1.478654 GCTGGGGGACTTCAAAGTTCA 60.479 52.381 3.68 0.00 39.88 3.18
1361 1531 2.819348 GCTGGGGGACTTCAAAGTTCAT 60.819 50.000 3.68 0.00 39.88 2.57
1362 1532 3.084786 CTGGGGGACTTCAAAGTTCATC 58.915 50.000 3.68 0.00 39.88 2.92
1363 1533 2.445145 TGGGGGACTTCAAAGTTCATCA 59.555 45.455 3.68 0.00 39.88 3.07
1364 1534 3.117322 TGGGGGACTTCAAAGTTCATCAA 60.117 43.478 3.68 0.00 39.88 2.57
1365 1535 3.895041 GGGGGACTTCAAAGTTCATCAAA 59.105 43.478 3.68 0.00 39.88 2.69
1366 1536 4.343814 GGGGGACTTCAAAGTTCATCAAAA 59.656 41.667 3.68 0.00 39.88 2.44
1367 1537 5.509670 GGGGGACTTCAAAGTTCATCAAAAG 60.510 44.000 3.68 0.00 39.88 2.27
1368 1538 5.509670 GGGGACTTCAAAGTTCATCAAAAGG 60.510 44.000 3.68 0.00 39.88 3.11
1369 1539 5.509670 GGGACTTCAAAGTTCATCAAAAGGG 60.510 44.000 3.68 0.00 39.88 3.95
1370 1540 5.301805 GGACTTCAAAGTTCATCAAAAGGGA 59.698 40.000 0.00 0.00 39.88 4.20
1371 1541 6.183360 GGACTTCAAAGTTCATCAAAAGGGAA 60.183 38.462 0.00 0.00 39.88 3.97
1372 1542 6.809869 ACTTCAAAGTTCATCAAAAGGGAAG 58.190 36.000 0.00 0.00 35.21 3.46
1373 1543 5.200368 TCAAAGTTCATCAAAAGGGAAGC 57.800 39.130 0.00 0.00 0.00 3.86
1374 1544 4.039124 TCAAAGTTCATCAAAAGGGAAGCC 59.961 41.667 0.00 0.00 0.00 4.35
1375 1545 3.532641 AGTTCATCAAAAGGGAAGCCT 57.467 42.857 0.00 0.00 0.00 4.58
1376 1546 3.849527 AGTTCATCAAAAGGGAAGCCTT 58.150 40.909 0.00 0.00 0.00 4.35
1377 1547 4.226384 AGTTCATCAAAAGGGAAGCCTTT 58.774 39.130 0.00 0.00 41.16 3.11
1378 1548 4.039609 AGTTCATCAAAAGGGAAGCCTTTG 59.960 41.667 0.00 0.00 39.58 2.77
1379 1549 3.843422 TCATCAAAAGGGAAGCCTTTGA 58.157 40.909 0.00 0.00 39.58 2.69
1380 1550 3.828451 TCATCAAAAGGGAAGCCTTTGAG 59.172 43.478 0.00 0.00 39.58 3.02
1381 1551 3.593442 TCAAAAGGGAAGCCTTTGAGA 57.407 42.857 0.00 0.00 39.58 3.27
1382 1552 3.909732 TCAAAAGGGAAGCCTTTGAGAA 58.090 40.909 0.00 0.00 39.58 2.87
1383 1553 4.285863 TCAAAAGGGAAGCCTTTGAGAAA 58.714 39.130 0.00 0.00 39.58 2.52
1384 1554 4.901250 TCAAAAGGGAAGCCTTTGAGAAAT 59.099 37.500 0.00 0.00 39.58 2.17
1385 1555 5.011023 TCAAAAGGGAAGCCTTTGAGAAATC 59.989 40.000 0.00 0.00 39.58 2.17
1386 1556 3.093057 AGGGAAGCCTTTGAGAAATCC 57.907 47.619 0.00 0.00 0.00 3.01
1387 1557 2.379907 AGGGAAGCCTTTGAGAAATCCA 59.620 45.455 0.00 0.00 0.00 3.41
1388 1558 3.165071 GGGAAGCCTTTGAGAAATCCAA 58.835 45.455 0.00 0.00 0.00 3.53
1389 1559 3.194329 GGGAAGCCTTTGAGAAATCCAAG 59.806 47.826 0.00 0.00 0.00 3.61
1390 1560 3.367806 GGAAGCCTTTGAGAAATCCAAGC 60.368 47.826 0.00 0.00 0.00 4.01
1391 1561 2.880443 AGCCTTTGAGAAATCCAAGCA 58.120 42.857 0.00 0.00 0.00 3.91
1392 1562 3.438183 AGCCTTTGAGAAATCCAAGCAT 58.562 40.909 0.00 0.00 0.00 3.79
1393 1563 3.446516 AGCCTTTGAGAAATCCAAGCATC 59.553 43.478 0.00 0.00 0.00 3.91
1394 1564 3.446516 GCCTTTGAGAAATCCAAGCATCT 59.553 43.478 0.00 0.00 0.00 2.90
1395 1565 4.439837 GCCTTTGAGAAATCCAAGCATCTC 60.440 45.833 0.00 0.00 38.98 2.75
1396 1566 4.703575 CCTTTGAGAAATCCAAGCATCTCA 59.296 41.667 0.46 0.46 44.74 3.27
1399 1569 4.267536 TGAGAAATCCAAGCATCTCAAGG 58.732 43.478 2.07 0.00 43.79 3.61
1400 1570 4.019051 TGAGAAATCCAAGCATCTCAAGGA 60.019 41.667 2.07 0.00 43.79 3.36
1401 1571 5.126699 AGAAATCCAAGCATCTCAAGGAT 57.873 39.130 0.00 0.00 40.66 3.24
1420 1590 4.530875 GGATGATTCCTTCACAATCAGGT 58.469 43.478 1.93 0.00 42.23 4.00
1421 1591 4.337555 GGATGATTCCTTCACAATCAGGTG 59.662 45.833 1.93 0.00 42.23 4.00
1422 1592 4.371624 TGATTCCTTCACAATCAGGTGT 57.628 40.909 0.00 0.00 39.76 4.16
1423 1593 8.065036 GGATGATTCCTTCACAATCAGGTGTG 62.065 46.154 0.00 0.00 42.23 3.82
1432 1602 4.572985 ACAATCAGGTGTGACATTGTTG 57.427 40.909 0.00 2.09 33.83 3.33
1433 1603 3.953612 ACAATCAGGTGTGACATTGTTGT 59.046 39.130 0.00 2.65 33.83 3.32
1449 1619 1.804748 GTTGTCATCAACGGGTTCTCC 59.195 52.381 0.00 0.00 43.23 3.71
1450 1620 1.052617 TGTCATCAACGGGTTCTCCA 58.947 50.000 0.00 0.00 34.36 3.86
1451 1621 1.270625 TGTCATCAACGGGTTCTCCAC 60.271 52.381 0.00 0.00 34.36 4.02
1452 1622 0.323629 TCATCAACGGGTTCTCCACC 59.676 55.000 0.00 0.00 46.46 4.61
1460 1630 2.873797 GGTTCTCCACCAAGATGGC 58.126 57.895 0.00 0.00 46.42 4.40
1461 1631 0.681243 GGTTCTCCACCAAGATGGCC 60.681 60.000 0.00 0.00 46.42 5.36
1462 1632 1.026718 GTTCTCCACCAAGATGGCCG 61.027 60.000 0.00 0.00 42.67 6.13
1463 1633 1.198094 TTCTCCACCAAGATGGCCGA 61.198 55.000 0.00 0.00 42.67 5.54
1464 1634 1.153289 CTCCACCAAGATGGCCGAG 60.153 63.158 0.00 0.00 42.67 4.63
1465 1635 2.124570 CCACCAAGATGGCCGAGG 60.125 66.667 0.00 0.00 42.67 4.63
1466 1636 2.825836 CACCAAGATGGCCGAGGC 60.826 66.667 5.37 5.37 42.67 4.70
1467 1637 3.011517 ACCAAGATGGCCGAGGCT 61.012 61.111 14.33 0.00 42.67 4.58
1468 1638 2.515523 CCAAGATGGCCGAGGCTG 60.516 66.667 14.33 3.78 41.60 4.85
1469 1639 3.207669 CAAGATGGCCGAGGCTGC 61.208 66.667 14.33 3.92 41.60 5.25
1470 1640 3.406200 AAGATGGCCGAGGCTGCT 61.406 61.111 14.33 6.14 41.60 4.24
1471 1641 3.694058 AAGATGGCCGAGGCTGCTG 62.694 63.158 14.33 0.00 41.60 4.41
1482 1652 3.141449 GCTGCTGCCCCAAAGTTT 58.859 55.556 3.85 0.00 0.00 2.66
1483 1653 1.301165 GCTGCTGCCCCAAAGTTTG 60.301 57.895 8.73 8.73 0.00 2.93
1484 1654 2.031674 GCTGCTGCCCCAAAGTTTGT 62.032 55.000 14.36 0.00 0.00 2.83
1485 1655 0.465287 CTGCTGCCCCAAAGTTTGTT 59.535 50.000 14.36 0.00 0.00 2.83
1486 1656 0.908198 TGCTGCCCCAAAGTTTGTTT 59.092 45.000 14.36 0.00 0.00 2.83
1487 1657 1.134551 TGCTGCCCCAAAGTTTGTTTC 60.135 47.619 14.36 3.57 0.00 2.78
1488 1658 1.810031 GCTGCCCCAAAGTTTGTTTCC 60.810 52.381 14.36 1.22 0.00 3.13
1489 1659 0.833949 TGCCCCAAAGTTTGTTTCCC 59.166 50.000 14.36 0.00 0.00 3.97
1490 1660 0.107831 GCCCCAAAGTTTGTTTCCCC 59.892 55.000 14.36 0.00 0.00 4.81
1491 1661 0.391228 CCCCAAAGTTTGTTTCCCCG 59.609 55.000 14.36 0.00 0.00 5.73
1492 1662 0.249699 CCCAAAGTTTGTTTCCCCGC 60.250 55.000 14.36 0.00 0.00 6.13
1493 1663 0.249699 CCAAAGTTTGTTTCCCCGCC 60.250 55.000 14.36 0.00 0.00 6.13
1494 1664 0.249699 CAAAGTTTGTTTCCCCGCCC 60.250 55.000 7.48 0.00 0.00 6.13
1495 1665 1.404479 AAAGTTTGTTTCCCCGCCCC 61.404 55.000 0.00 0.00 0.00 5.80
1496 1666 3.307906 GTTTGTTTCCCCGCCCCC 61.308 66.667 0.00 0.00 0.00 5.40
1497 1667 4.978705 TTTGTTTCCCCGCCCCCG 62.979 66.667 0.00 0.00 0.00 5.73
1509 1679 4.078516 CCCCCGTCCGACCTGAAC 62.079 72.222 0.00 0.00 0.00 3.18
1510 1680 3.307906 CCCCGTCCGACCTGAACA 61.308 66.667 0.00 0.00 0.00 3.18
1511 1681 2.738480 CCCGTCCGACCTGAACAA 59.262 61.111 0.00 0.00 0.00 2.83
1512 1682 1.374252 CCCGTCCGACCTGAACAAG 60.374 63.158 0.00 0.00 0.00 3.16
1513 1683 2.027625 CCGTCCGACCTGAACAAGC 61.028 63.158 0.00 0.00 0.00 4.01
1514 1684 1.300620 CGTCCGACCTGAACAAGCA 60.301 57.895 0.00 0.00 0.00 3.91
1515 1685 1.557443 CGTCCGACCTGAACAAGCAC 61.557 60.000 0.00 0.00 0.00 4.40
1516 1686 1.070786 TCCGACCTGAACAAGCACC 59.929 57.895 0.00 0.00 0.00 5.01
1517 1687 1.071471 CCGACCTGAACAAGCACCT 59.929 57.895 0.00 0.00 0.00 4.00
1518 1688 0.951040 CCGACCTGAACAAGCACCTC 60.951 60.000 0.00 0.00 0.00 3.85
1519 1689 1.284982 CGACCTGAACAAGCACCTCG 61.285 60.000 0.00 0.00 0.00 4.63
1520 1690 0.951040 GACCTGAACAAGCACCTCGG 60.951 60.000 0.00 0.00 0.00 4.63
1521 1691 2.328099 CCTGAACAAGCACCTCGGC 61.328 63.158 0.00 0.00 0.00 5.54
1522 1692 2.664851 TGAACAAGCACCTCGGCG 60.665 61.111 0.00 0.00 39.27 6.46
1523 1693 2.665185 GAACAAGCACCTCGGCGT 60.665 61.111 6.85 0.00 39.27 5.68
1524 1694 2.203153 AACAAGCACCTCGGCGTT 60.203 55.556 6.85 0.00 39.27 4.84
1525 1695 2.171489 GAACAAGCACCTCGGCGTTC 62.171 60.000 6.85 0.00 39.27 3.95
1526 1696 2.357517 CAAGCACCTCGGCGTTCT 60.358 61.111 6.85 0.00 39.27 3.01
1527 1697 2.048127 AAGCACCTCGGCGTTCTC 60.048 61.111 6.85 0.00 39.27 2.87
1528 1698 3.591254 AAGCACCTCGGCGTTCTCC 62.591 63.158 6.85 0.00 39.27 3.71
1529 1699 4.070552 GCACCTCGGCGTTCTCCT 62.071 66.667 6.85 0.00 0.00 3.69
1530 1700 2.657237 CACCTCGGCGTTCTCCTT 59.343 61.111 6.85 0.00 0.00 3.36
1531 1701 1.888018 CACCTCGGCGTTCTCCTTA 59.112 57.895 6.85 0.00 0.00 2.69
1532 1702 0.245539 CACCTCGGCGTTCTCCTTAA 59.754 55.000 6.85 0.00 0.00 1.85
1533 1703 0.531200 ACCTCGGCGTTCTCCTTAAG 59.469 55.000 6.85 0.00 0.00 1.85
1534 1704 0.815734 CCTCGGCGTTCTCCTTAAGA 59.184 55.000 6.85 0.00 0.00 2.10
1535 1705 1.469423 CCTCGGCGTTCTCCTTAAGAC 60.469 57.143 6.85 0.00 32.27 3.01
1536 1706 0.529378 TCGGCGTTCTCCTTAAGACC 59.471 55.000 6.85 0.00 32.27 3.85
1537 1707 0.801067 CGGCGTTCTCCTTAAGACCG 60.801 60.000 3.36 1.92 42.34 4.79
1538 1708 0.529378 GGCGTTCTCCTTAAGACCGA 59.471 55.000 3.36 0.00 42.04 4.69
1539 1709 1.469423 GGCGTTCTCCTTAAGACCGAG 60.469 57.143 3.36 2.46 42.04 4.63
1540 1710 1.471684 GCGTTCTCCTTAAGACCGAGA 59.528 52.381 3.36 4.97 42.04 4.04
1541 1711 2.094854 GCGTTCTCCTTAAGACCGAGAA 60.095 50.000 14.89 14.89 42.04 2.87
1542 1712 3.760537 CGTTCTCCTTAAGACCGAGAAG 58.239 50.000 17.76 11.13 42.04 2.85
1543 1713 3.427773 CGTTCTCCTTAAGACCGAGAAGG 60.428 52.174 17.76 18.54 42.04 3.46
1544 1714 2.736347 TCTCCTTAAGACCGAGAAGGG 58.264 52.381 3.36 0.00 46.96 3.95
1553 1723 4.514577 CGAGAAGGGCGCCGATGT 62.515 66.667 22.54 10.26 0.00 3.06
1554 1724 2.892425 GAGAAGGGCGCCGATGTG 60.892 66.667 22.54 0.00 0.00 3.21
1555 1725 4.473520 AGAAGGGCGCCGATGTGG 62.474 66.667 22.54 0.00 42.50 4.17
1556 1726 4.778143 GAAGGGCGCCGATGTGGT 62.778 66.667 22.54 0.00 41.21 4.16
1562 1732 2.474266 CGCCGATGTGGTGTTTCG 59.526 61.111 0.00 0.00 43.63 3.46
1564 1734 3.573558 CCGATGTGGTGTTTCGGG 58.426 61.111 2.74 0.00 46.67 5.14
1565 1735 1.302192 CCGATGTGGTGTTTCGGGT 60.302 57.895 2.74 0.00 46.67 5.28
1566 1736 0.887387 CCGATGTGGTGTTTCGGGTT 60.887 55.000 2.74 0.00 46.67 4.11
1567 1737 0.237235 CGATGTGGTGTTTCGGGTTG 59.763 55.000 0.00 0.00 0.00 3.77
1568 1738 0.596082 GATGTGGTGTTTCGGGTTGG 59.404 55.000 0.00 0.00 0.00 3.77
1569 1739 1.460273 ATGTGGTGTTTCGGGTTGGC 61.460 55.000 0.00 0.00 0.00 4.52
1570 1740 2.122167 GTGGTGTTTCGGGTTGGCA 61.122 57.895 0.00 0.00 0.00 4.92
1571 1741 1.826054 TGGTGTTTCGGGTTGGCAG 60.826 57.895 0.00 0.00 0.00 4.85
1572 1742 1.826487 GGTGTTTCGGGTTGGCAGT 60.826 57.895 0.00 0.00 0.00 4.40
1573 1743 1.358759 GTGTTTCGGGTTGGCAGTG 59.641 57.895 0.00 0.00 0.00 3.66
1574 1744 1.098712 GTGTTTCGGGTTGGCAGTGA 61.099 55.000 0.00 0.00 0.00 3.41
1575 1745 0.817634 TGTTTCGGGTTGGCAGTGAG 60.818 55.000 0.00 0.00 0.00 3.51
1576 1746 0.534203 GTTTCGGGTTGGCAGTGAGA 60.534 55.000 0.00 0.00 0.00 3.27
1577 1747 0.534203 TTTCGGGTTGGCAGTGAGAC 60.534 55.000 0.00 0.00 0.00 3.36
1578 1748 2.709125 TTCGGGTTGGCAGTGAGACG 62.709 60.000 0.00 0.00 0.00 4.18
1579 1749 2.426023 GGGTTGGCAGTGAGACGT 59.574 61.111 0.00 0.00 0.00 4.34
1580 1750 1.227853 GGGTTGGCAGTGAGACGTT 60.228 57.895 0.00 0.00 0.00 3.99
1581 1751 1.228657 GGGTTGGCAGTGAGACGTTC 61.229 60.000 0.00 0.00 0.00 3.95
1582 1752 1.557443 GGTTGGCAGTGAGACGTTCG 61.557 60.000 0.00 0.00 0.00 3.95
1583 1753 1.954146 TTGGCAGTGAGACGTTCGC 60.954 57.895 0.00 0.00 36.54 4.70
1584 1754 3.112709 GGCAGTGAGACGTTCGCC 61.113 66.667 0.00 0.00 36.99 5.54
1585 1755 3.470567 GCAGTGAGACGTTCGCCG 61.471 66.667 0.00 0.00 44.03 6.46
1586 1756 3.470567 CAGTGAGACGTTCGCCGC 61.471 66.667 0.00 0.00 41.42 6.53
1587 1757 3.973516 AGTGAGACGTTCGCCGCA 61.974 61.111 0.00 0.00 41.42 5.69
1588 1758 3.764049 GTGAGACGTTCGCCGCAC 61.764 66.667 0.00 0.16 41.42 5.34
1589 1759 4.273257 TGAGACGTTCGCCGCACA 62.273 61.111 0.00 0.00 41.42 4.57
1590 1760 3.764049 GAGACGTTCGCCGCACAC 61.764 66.667 0.00 0.00 41.42 3.82
1595 1765 4.147322 GTTCGCCGCACACCGATG 62.147 66.667 0.00 0.00 40.02 3.84
1603 1773 3.842126 CACACCGATGCGTGCTCG 61.842 66.667 3.31 3.31 37.25 5.03
1613 1783 4.933064 CGTGCTCGCCTCCCGATC 62.933 72.222 0.00 0.00 46.31 3.69
1614 1784 4.933064 GTGCTCGCCTCCCGATCG 62.933 72.222 8.51 8.51 46.31 3.69
1627 1797 2.506544 CGATCGCCGGTATTCAGTG 58.493 57.895 0.26 0.00 33.91 3.66
1628 1798 1.548973 CGATCGCCGGTATTCAGTGC 61.549 60.000 0.26 0.00 33.91 4.40
1629 1799 1.548973 GATCGCCGGTATTCAGTGCG 61.549 60.000 1.90 0.00 46.09 5.34
1630 1800 2.971428 ATCGCCGGTATTCAGTGCGG 62.971 60.000 1.90 2.14 44.91 5.69
1631 1801 2.185867 GCCGGTATTCAGTGCGGA 59.814 61.111 1.90 0.00 0.00 5.54
1632 1802 1.883084 GCCGGTATTCAGTGCGGAG 60.883 63.158 1.90 0.00 0.00 4.63
1646 1816 2.512515 GGAGCTCTTCGGCGCAAT 60.513 61.111 14.64 0.00 37.29 3.56
1647 1817 2.705826 GAGCTCTTCGGCGCAATG 59.294 61.111 10.83 0.00 37.29 2.82
1648 1818 1.811266 GAGCTCTTCGGCGCAATGA 60.811 57.895 10.83 0.00 37.29 2.57
1649 1819 1.361668 GAGCTCTTCGGCGCAATGAA 61.362 55.000 10.83 9.31 37.29 2.57
1650 1820 1.061570 GCTCTTCGGCGCAATGAAG 59.938 57.895 22.71 22.71 42.30 3.02
1651 1821 1.717937 CTCTTCGGCGCAATGAAGG 59.282 57.895 25.93 17.16 41.48 3.46
1652 1822 0.740868 CTCTTCGGCGCAATGAAGGA 60.741 55.000 25.93 16.28 41.48 3.36
1653 1823 0.740868 TCTTCGGCGCAATGAAGGAG 60.741 55.000 25.93 10.43 41.48 3.69
1654 1824 1.709147 CTTCGGCGCAATGAAGGAGG 61.709 60.000 21.61 4.36 38.31 4.30
1655 1825 3.204827 CGGCGCAATGAAGGAGGG 61.205 66.667 10.83 0.00 0.00 4.30
1656 1826 2.044946 GGCGCAATGAAGGAGGGT 60.045 61.111 10.83 0.00 0.00 4.34
1657 1827 2.409870 GGCGCAATGAAGGAGGGTG 61.410 63.158 10.83 0.00 0.00 4.61
1658 1828 2.409870 GCGCAATGAAGGAGGGTGG 61.410 63.158 0.30 0.00 0.00 4.61
1659 1829 2.409870 CGCAATGAAGGAGGGTGGC 61.410 63.158 0.00 0.00 0.00 5.01
1660 1830 1.304381 GCAATGAAGGAGGGTGGCA 60.304 57.895 0.00 0.00 0.00 4.92
1661 1831 1.598701 GCAATGAAGGAGGGTGGCAC 61.599 60.000 9.70 9.70 0.00 5.01
1662 1832 0.251297 CAATGAAGGAGGGTGGCACA 60.251 55.000 20.82 0.00 0.00 4.57
1663 1833 0.706433 AATGAAGGAGGGTGGCACAT 59.294 50.000 20.82 7.18 44.52 3.21
1664 1834 0.257039 ATGAAGGAGGGTGGCACATC 59.743 55.000 20.82 15.97 44.52 3.06
1671 1841 2.125106 GGTGGCACATCCGGAGTC 60.125 66.667 20.82 0.00 44.52 3.36
1672 1842 2.662596 GTGGCACATCCGGAGTCA 59.337 61.111 13.86 0.17 44.52 3.41
1673 1843 1.221840 GTGGCACATCCGGAGTCAT 59.778 57.895 13.86 0.00 44.52 3.06
1674 1844 0.464036 GTGGCACATCCGGAGTCATA 59.536 55.000 13.86 0.00 44.52 2.15
1675 1845 0.464036 TGGCACATCCGGAGTCATAC 59.536 55.000 11.34 0.00 37.80 2.39
1676 1846 0.464036 GGCACATCCGGAGTCATACA 59.536 55.000 11.34 0.00 0.00 2.29
1677 1847 1.571919 GCACATCCGGAGTCATACAC 58.428 55.000 11.34 0.00 0.00 2.90
1678 1848 1.134818 GCACATCCGGAGTCATACACA 60.135 52.381 11.34 0.00 0.00 3.72
1679 1849 2.483714 GCACATCCGGAGTCATACACAT 60.484 50.000 11.34 0.00 0.00 3.21
1680 1850 3.243737 GCACATCCGGAGTCATACACATA 60.244 47.826 11.34 0.00 0.00 2.29
1681 1851 4.550422 CACATCCGGAGTCATACACATAG 58.450 47.826 11.34 0.00 0.00 2.23
1682 1852 4.278419 CACATCCGGAGTCATACACATAGA 59.722 45.833 11.34 0.00 0.00 1.98
1683 1853 5.047731 CACATCCGGAGTCATACACATAGAT 60.048 44.000 11.34 0.00 0.00 1.98
1684 1854 5.047731 ACATCCGGAGTCATACACATAGATG 60.048 44.000 11.34 0.00 0.00 2.90
1685 1855 4.725490 TCCGGAGTCATACACATAGATGA 58.275 43.478 0.00 0.00 0.00 2.92
1694 1864 7.163001 TCATACACATAGATGACATAGAGGC 57.837 40.000 0.00 0.00 0.00 4.70
1695 1865 6.950619 TCATACACATAGATGACATAGAGGCT 59.049 38.462 0.00 0.00 0.00 4.58
1696 1866 5.720371 ACACATAGATGACATAGAGGCTC 57.280 43.478 6.34 6.34 0.00 4.70
1697 1867 5.143369 ACACATAGATGACATAGAGGCTCA 58.857 41.667 18.26 3.05 0.00 4.26
1698 1868 5.243507 ACACATAGATGACATAGAGGCTCAG 59.756 44.000 18.26 8.63 0.00 3.35
1699 1869 4.771577 ACATAGATGACATAGAGGCTCAGG 59.228 45.833 18.26 7.88 0.00 3.86
1700 1870 3.326946 AGATGACATAGAGGCTCAGGT 57.673 47.619 18.26 11.23 0.00 4.00
1701 1871 2.964464 AGATGACATAGAGGCTCAGGTG 59.036 50.000 18.26 13.88 0.00 4.00
1702 1872 2.238084 TGACATAGAGGCTCAGGTGT 57.762 50.000 18.26 16.93 0.00 4.16
1703 1873 2.540383 TGACATAGAGGCTCAGGTGTT 58.460 47.619 18.26 0.00 0.00 3.32
1704 1874 2.497675 TGACATAGAGGCTCAGGTGTTC 59.502 50.000 18.26 11.58 0.00 3.18
1707 1877 3.055530 ACATAGAGGCTCAGGTGTTCAAG 60.056 47.826 18.26 0.00 0.00 3.02
1738 1908 0.675083 TTTCGCCTACACCGACAAGA 59.325 50.000 0.00 0.00 34.01 3.02
1792 1962 4.256110 CATGTTCCAGCATCTACTTGTCA 58.744 43.478 0.00 0.00 0.00 3.58
1949 2119 2.881403 GCTTTGATTTCCTCAGCTCCCA 60.881 50.000 0.00 0.00 34.68 4.37
2033 2203 4.644498 TCTGTTGTGATGAAGCTGATTGA 58.356 39.130 0.00 0.00 0.00 2.57
2040 2210 1.089112 TGAAGCTGATTGACATGCCG 58.911 50.000 0.00 0.00 0.00 5.69
2252 3890 9.823647 TCACTTTGTTTATTTATTTTGCCTTGA 57.176 25.926 0.00 0.00 0.00 3.02
2626 10873 1.967319 TTTTCTCTGTCAGTGGCCAC 58.033 50.000 29.22 29.22 0.00 5.01
2882 11216 6.258507 ACTGCACAATTTTGGAAAAAGATGAC 59.741 34.615 0.00 2.48 0.00 3.06
2987 11321 5.245531 TCAAATAGGAGAATGGTCACACAC 58.754 41.667 0.00 0.00 0.00 3.82
3004 11338 4.761739 CACACACAGAGGGTCATGTTATTT 59.238 41.667 0.00 0.00 0.00 1.40
3005 11339 4.761739 ACACACAGAGGGTCATGTTATTTG 59.238 41.667 0.00 0.00 0.00 2.32
3006 11340 4.761739 CACACAGAGGGTCATGTTATTTGT 59.238 41.667 0.00 0.00 0.00 2.83
3007 11341 5.241506 CACACAGAGGGTCATGTTATTTGTT 59.758 40.000 0.00 0.00 0.00 2.83
3008 11342 6.429692 CACACAGAGGGTCATGTTATTTGTTA 59.570 38.462 0.00 0.00 0.00 2.41
3009 11343 6.655003 ACACAGAGGGTCATGTTATTTGTTAG 59.345 38.462 0.00 0.00 0.00 2.34
3010 11344 6.094048 CACAGAGGGTCATGTTATTTGTTAGG 59.906 42.308 0.00 0.00 0.00 2.69
3011 11345 6.012858 ACAGAGGGTCATGTTATTTGTTAGGA 60.013 38.462 0.00 0.00 0.00 2.94
3012 11346 6.884295 CAGAGGGTCATGTTATTTGTTAGGAA 59.116 38.462 0.00 0.00 0.00 3.36
3013 11347 7.557719 CAGAGGGTCATGTTATTTGTTAGGAAT 59.442 37.037 0.00 0.00 0.00 3.01
3014 11348 8.778059 AGAGGGTCATGTTATTTGTTAGGAATA 58.222 33.333 0.00 0.00 0.00 1.75
3015 11349 9.403583 GAGGGTCATGTTATTTGTTAGGAATAA 57.596 33.333 0.00 0.00 0.00 1.40
3016 11350 9.408648 AGGGTCATGTTATTTGTTAGGAATAAG 57.591 33.333 0.00 0.00 31.60 1.73
3017 11351 8.135529 GGGTCATGTTATTTGTTAGGAATAAGC 58.864 37.037 0.00 0.00 31.60 3.09
3018 11352 8.682710 GGTCATGTTATTTGTTAGGAATAAGCA 58.317 33.333 0.00 0.00 31.60 3.91
3023 11357 9.906660 TGTTATTTGTTAGGAATAAGCAACTTG 57.093 29.630 0.00 0.00 31.60 3.16
3024 11358 9.908152 GTTATTTGTTAGGAATAAGCAACTTGT 57.092 29.630 0.00 0.00 31.60 3.16
3032 11366 6.715347 GGAATAAGCAACTTGTATTCCCAT 57.285 37.500 14.79 0.00 43.89 4.00
3033 11367 6.507023 GGAATAAGCAACTTGTATTCCCATG 58.493 40.000 14.79 0.00 43.89 3.66
3034 11368 6.321181 GGAATAAGCAACTTGTATTCCCATGA 59.679 38.462 14.79 0.00 43.89 3.07
3035 11369 6.949352 ATAAGCAACTTGTATTCCCATGAG 57.051 37.500 0.00 0.00 0.00 2.90
3036 11370 3.624777 AGCAACTTGTATTCCCATGAGG 58.375 45.455 0.00 0.00 0.00 3.86
3037 11371 2.099756 GCAACTTGTATTCCCATGAGGC 59.900 50.000 0.00 0.00 34.51 4.70
3038 11372 2.689983 CAACTTGTATTCCCATGAGGCC 59.310 50.000 0.00 0.00 34.51 5.19
3039 11373 1.922447 ACTTGTATTCCCATGAGGCCA 59.078 47.619 5.01 0.00 34.51 5.36
3040 11374 2.515429 ACTTGTATTCCCATGAGGCCAT 59.485 45.455 5.01 0.00 34.51 4.40
3041 11375 3.721575 ACTTGTATTCCCATGAGGCCATA 59.278 43.478 5.01 0.00 34.51 2.74
3042 11376 4.202503 ACTTGTATTCCCATGAGGCCATAG 60.203 45.833 5.01 0.00 34.51 2.23
3043 11377 2.644299 TGTATTCCCATGAGGCCATAGG 59.356 50.000 5.01 0.21 33.55 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.878317 TCTGAAGACTTTCTGAAGACTTTGA 58.122 36.000 5.61 5.29 44.18 2.69
1 2 7.545362 TTCTGAAGACTTTCTGAAGACTTTG 57.455 36.000 5.61 3.59 44.18 2.77
2 3 8.744568 ATTTCTGAAGACTTTCTGAAGACTTT 57.255 30.769 5.61 0.00 45.73 2.66
3 4 8.744568 AATTTCTGAAGACTTTCTGAAGACTT 57.255 30.769 4.11 4.11 45.73 3.01
5 6 8.147642 TGAATTTCTGAAGACTTTCTGAAGAC 57.852 34.615 8.78 6.49 45.73 3.01
6 7 8.737168 TTGAATTTCTGAAGACTTTCTGAAGA 57.263 30.769 8.78 3.62 45.73 2.87
7 8 9.448294 CTTTGAATTTCTGAAGACTTTCTGAAG 57.552 33.333 8.78 0.00 45.73 3.02
8 9 8.960591 ACTTTGAATTTCTGAAGACTTTCTGAA 58.039 29.630 15.36 5.77 44.47 3.02
9 10 8.511604 ACTTTGAATTTCTGAAGACTTTCTGA 57.488 30.769 15.36 0.00 38.86 3.27
10 11 8.619546 AGACTTTGAATTTCTGAAGACTTTCTG 58.380 33.333 15.36 0.00 34.31 3.02
11 12 8.744568 AGACTTTGAATTTCTGAAGACTTTCT 57.255 30.769 15.36 8.15 34.31 2.52
12 13 9.444534 GAAGACTTTGAATTTCTGAAGACTTTC 57.555 33.333 19.85 14.53 35.42 2.62
13 14 8.960591 TGAAGACTTTGAATTTCTGAAGACTTT 58.039 29.630 19.85 11.89 35.42 2.66
14 15 8.511604 TGAAGACTTTGAATTTCTGAAGACTT 57.488 30.769 19.41 19.41 37.02 3.01
15 16 7.772757 ACTGAAGACTTTGAATTTCTGAAGACT 59.227 33.333 15.36 12.59 0.00 3.24
16 17 7.924940 ACTGAAGACTTTGAATTTCTGAAGAC 58.075 34.615 15.36 11.14 0.00 3.01
17 18 7.042456 CGACTGAAGACTTTGAATTTCTGAAGA 60.042 37.037 15.36 0.00 0.00 2.87
18 19 7.042456 TCGACTGAAGACTTTGAATTTCTGAAG 60.042 37.037 9.89 9.89 0.00 3.02
19 20 6.761242 TCGACTGAAGACTTTGAATTTCTGAA 59.239 34.615 0.00 0.00 0.00 3.02
20 21 6.280643 TCGACTGAAGACTTTGAATTTCTGA 58.719 36.000 0.00 0.00 0.00 3.27
21 22 6.530913 TCGACTGAAGACTTTGAATTTCTG 57.469 37.500 0.00 0.00 0.00 3.02
36 37 7.041372 CCCTAAAAATGAAGTTCTTCGACTGAA 60.041 37.037 4.17 0.00 0.00 3.02
37 38 6.426937 CCCTAAAAATGAAGTTCTTCGACTGA 59.573 38.462 4.17 0.00 0.00 3.41
38 39 6.348540 CCCCTAAAAATGAAGTTCTTCGACTG 60.349 42.308 4.17 0.00 0.00 3.51
39 40 5.705905 CCCCTAAAAATGAAGTTCTTCGACT 59.294 40.000 4.17 0.00 0.00 4.18
40 41 5.472478 ACCCCTAAAAATGAAGTTCTTCGAC 59.528 40.000 4.17 0.00 0.00 4.20
41 42 5.627135 ACCCCTAAAAATGAAGTTCTTCGA 58.373 37.500 4.17 0.00 0.00 3.71
42 43 5.390567 CGACCCCTAAAAATGAAGTTCTTCG 60.391 44.000 4.17 0.00 0.00 3.79
43 44 5.704053 TCGACCCCTAAAAATGAAGTTCTTC 59.296 40.000 4.17 5.70 0.00 2.87
44 45 5.472478 GTCGACCCCTAAAAATGAAGTTCTT 59.528 40.000 3.51 0.00 0.00 2.52
45 46 5.001874 GTCGACCCCTAAAAATGAAGTTCT 58.998 41.667 3.51 0.00 0.00 3.01
46 47 5.001874 AGTCGACCCCTAAAAATGAAGTTC 58.998 41.667 13.01 0.00 0.00 3.01
47 48 4.981812 AGTCGACCCCTAAAAATGAAGTT 58.018 39.130 13.01 0.00 0.00 2.66
48 49 4.635699 AGTCGACCCCTAAAAATGAAGT 57.364 40.909 13.01 0.00 0.00 3.01
49 50 5.246307 AGAAGTCGACCCCTAAAAATGAAG 58.754 41.667 13.01 0.00 0.00 3.02
50 51 5.012768 AGAGAAGTCGACCCCTAAAAATGAA 59.987 40.000 13.01 0.00 0.00 2.57
51 52 4.530946 AGAGAAGTCGACCCCTAAAAATGA 59.469 41.667 13.01 0.00 0.00 2.57
52 53 4.631813 CAGAGAAGTCGACCCCTAAAAATG 59.368 45.833 13.01 0.00 0.00 2.32
53 54 4.286291 ACAGAGAAGTCGACCCCTAAAAAT 59.714 41.667 13.01 0.00 0.00 1.82
54 55 3.644738 ACAGAGAAGTCGACCCCTAAAAA 59.355 43.478 13.01 0.00 0.00 1.94
55 56 3.236896 ACAGAGAAGTCGACCCCTAAAA 58.763 45.455 13.01 0.00 0.00 1.52
56 57 2.885616 ACAGAGAAGTCGACCCCTAAA 58.114 47.619 13.01 0.00 0.00 1.85
57 58 2.599408 ACAGAGAAGTCGACCCCTAA 57.401 50.000 13.01 0.00 0.00 2.69
58 59 3.726557 TTACAGAGAAGTCGACCCCTA 57.273 47.619 13.01 0.00 0.00 3.53
59 60 2.599408 TTACAGAGAAGTCGACCCCT 57.401 50.000 13.01 9.58 0.00 4.79
60 61 3.889520 ATTTACAGAGAAGTCGACCCC 57.110 47.619 13.01 4.16 0.00 4.95
61 62 6.145338 TGATATTTACAGAGAAGTCGACCC 57.855 41.667 13.01 4.56 0.00 4.46
62 63 7.760340 AGTTTGATATTTACAGAGAAGTCGACC 59.240 37.037 13.01 0.00 0.00 4.79
63 64 8.690680 AGTTTGATATTTACAGAGAAGTCGAC 57.309 34.615 7.70 7.70 0.00 4.20
64 65 7.974501 GGAGTTTGATATTTACAGAGAAGTCGA 59.025 37.037 0.00 0.00 0.00 4.20
65 66 7.976734 AGGAGTTTGATATTTACAGAGAAGTCG 59.023 37.037 0.00 0.00 0.00 4.18
66 67 9.308318 GAGGAGTTTGATATTTACAGAGAAGTC 57.692 37.037 0.00 0.00 0.00 3.01
67 68 8.816894 TGAGGAGTTTGATATTTACAGAGAAGT 58.183 33.333 0.00 0.00 0.00 3.01
68 69 9.829507 ATGAGGAGTTTGATATTTACAGAGAAG 57.170 33.333 0.00 0.00 0.00 2.85
81 82 9.084533 GGACTATAAGTCTATGAGGAGTTTGAT 57.915 37.037 6.99 0.00 44.46 2.57
82 83 8.282982 AGGACTATAAGTCTATGAGGAGTTTGA 58.717 37.037 6.99 0.00 44.46 2.69
83 84 8.356657 CAGGACTATAAGTCTATGAGGAGTTTG 58.643 40.741 6.99 0.00 44.46 2.93
84 85 8.062536 ACAGGACTATAAGTCTATGAGGAGTTT 58.937 37.037 15.12 0.00 44.46 2.66
85 86 7.504238 CACAGGACTATAAGTCTATGAGGAGTT 59.496 40.741 15.12 0.00 44.46 3.01
86 87 7.001674 CACAGGACTATAAGTCTATGAGGAGT 58.998 42.308 15.12 0.00 44.46 3.85
87 88 7.001674 ACACAGGACTATAAGTCTATGAGGAG 58.998 42.308 15.12 7.87 44.46 3.69
88 89 6.912426 ACACAGGACTATAAGTCTATGAGGA 58.088 40.000 15.12 0.00 44.46 3.71
89 90 7.720074 TGTACACAGGACTATAAGTCTATGAGG 59.280 40.741 15.12 10.76 44.46 3.86
90 91 8.561212 GTGTACACAGGACTATAAGTCTATGAG 58.439 40.741 21.14 11.40 44.46 2.90
91 92 8.272889 AGTGTACACAGGACTATAAGTCTATGA 58.727 37.037 27.06 0.00 44.46 2.15
92 93 8.453238 AGTGTACACAGGACTATAAGTCTATG 57.547 38.462 27.06 8.56 44.46 2.23
93 94 8.272889 TGAGTGTACACAGGACTATAAGTCTAT 58.727 37.037 27.06 0.40 44.46 1.98
94 95 7.627311 TGAGTGTACACAGGACTATAAGTCTA 58.373 38.462 27.06 1.34 44.46 2.59
95 96 6.482524 TGAGTGTACACAGGACTATAAGTCT 58.517 40.000 27.06 1.48 44.46 3.24
96 97 6.754702 TGAGTGTACACAGGACTATAAGTC 57.245 41.667 27.06 11.81 44.32 3.01
97 98 8.818622 TTATGAGTGTACACAGGACTATAAGT 57.181 34.615 27.06 2.15 0.00 2.24
100 101 8.141909 GCATTTATGAGTGTACACAGGACTATA 58.858 37.037 27.06 12.51 0.00 1.31
101 102 6.986817 GCATTTATGAGTGTACACAGGACTAT 59.013 38.462 27.06 13.37 0.00 2.12
102 103 6.071051 TGCATTTATGAGTGTACACAGGACTA 60.071 38.462 27.06 9.20 0.00 2.59
103 104 5.178797 GCATTTATGAGTGTACACAGGACT 58.821 41.667 27.06 6.59 0.00 3.85
104 105 4.935205 TGCATTTATGAGTGTACACAGGAC 59.065 41.667 27.06 15.12 0.00 3.85
105 106 5.159273 TGCATTTATGAGTGTACACAGGA 57.841 39.130 27.06 11.02 0.00 3.86
106 107 6.441093 AATGCATTTATGAGTGTACACAGG 57.559 37.500 27.06 8.75 0.00 4.00
107 108 8.424274 TCTAATGCATTTATGAGTGTACACAG 57.576 34.615 27.06 10.72 0.00 3.66
108 109 8.962884 ATCTAATGCATTTATGAGTGTACACA 57.037 30.769 27.06 8.72 0.00 3.72
109 110 8.499162 GGATCTAATGCATTTATGAGTGTACAC 58.501 37.037 18.75 18.56 0.00 2.90
110 111 8.432013 AGGATCTAATGCATTTATGAGTGTACA 58.568 33.333 18.75 0.00 0.00 2.90
111 112 8.839310 AGGATCTAATGCATTTATGAGTGTAC 57.161 34.615 18.75 3.68 0.00 2.90
113 114 9.851686 TTAAGGATCTAATGCATTTATGAGTGT 57.148 29.630 18.75 2.68 0.00 3.55
115 116 9.289782 GGTTAAGGATCTAATGCATTTATGAGT 57.710 33.333 18.75 1.10 0.00 3.41
116 117 9.512588 AGGTTAAGGATCTAATGCATTTATGAG 57.487 33.333 18.75 8.95 0.00 2.90
124 125 9.381038 AGACTTATAGGTTAAGGATCTAATGCA 57.619 33.333 0.00 0.00 0.00 3.96
134 135 9.543783 GGTGTATTGAAGACTTATAGGTTAAGG 57.456 37.037 0.00 0.00 0.00 2.69
138 139 9.802039 TTTTGGTGTATTGAAGACTTATAGGTT 57.198 29.630 0.00 0.00 0.00 3.50
139 140 9.975218 ATTTTGGTGTATTGAAGACTTATAGGT 57.025 29.630 0.00 0.00 0.00 3.08
143 144 9.520515 AGTGATTTTGGTGTATTGAAGACTTAT 57.479 29.630 0.00 0.00 0.00 1.73
144 145 8.918202 AGTGATTTTGGTGTATTGAAGACTTA 57.082 30.769 0.00 0.00 0.00 2.24
145 146 7.823745 AGTGATTTTGGTGTATTGAAGACTT 57.176 32.000 0.00 0.00 0.00 3.01
146 147 8.918202 TTAGTGATTTTGGTGTATTGAAGACT 57.082 30.769 0.00 0.00 0.00 3.24
147 148 8.237267 CCTTAGTGATTTTGGTGTATTGAAGAC 58.763 37.037 0.00 0.00 0.00 3.01
148 149 7.393234 CCCTTAGTGATTTTGGTGTATTGAAGA 59.607 37.037 0.00 0.00 0.00 2.87
149 150 7.362920 CCCCTTAGTGATTTTGGTGTATTGAAG 60.363 40.741 0.00 0.00 0.00 3.02
150 151 6.435904 CCCCTTAGTGATTTTGGTGTATTGAA 59.564 38.462 0.00 0.00 0.00 2.69
151 152 5.949354 CCCCTTAGTGATTTTGGTGTATTGA 59.051 40.000 0.00 0.00 0.00 2.57
152 153 5.394115 GCCCCTTAGTGATTTTGGTGTATTG 60.394 44.000 0.00 0.00 0.00 1.90
153 154 4.709886 GCCCCTTAGTGATTTTGGTGTATT 59.290 41.667 0.00 0.00 0.00 1.89
154 155 4.264172 TGCCCCTTAGTGATTTTGGTGTAT 60.264 41.667 0.00 0.00 0.00 2.29
155 156 3.074687 TGCCCCTTAGTGATTTTGGTGTA 59.925 43.478 0.00 0.00 0.00 2.90
156 157 2.158385 TGCCCCTTAGTGATTTTGGTGT 60.158 45.455 0.00 0.00 0.00 4.16
157 158 2.231235 GTGCCCCTTAGTGATTTTGGTG 59.769 50.000 0.00 0.00 0.00 4.17
158 159 2.110011 AGTGCCCCTTAGTGATTTTGGT 59.890 45.455 0.00 0.00 0.00 3.67
159 160 2.807676 AGTGCCCCTTAGTGATTTTGG 58.192 47.619 0.00 0.00 0.00 3.28
160 161 4.843728 TCTAGTGCCCCTTAGTGATTTTG 58.156 43.478 0.00 0.00 0.00 2.44
161 162 5.440610 CATCTAGTGCCCCTTAGTGATTTT 58.559 41.667 0.00 0.00 0.00 1.82
162 163 5.041191 CATCTAGTGCCCCTTAGTGATTT 57.959 43.478 0.00 0.00 0.00 2.17
163 164 4.696479 CATCTAGTGCCCCTTAGTGATT 57.304 45.455 0.00 0.00 0.00 2.57
187 188 3.632145 AGCAAAAGGTCCAACACTGTAAG 59.368 43.478 0.00 0.00 42.29 2.34
188 189 3.626930 AGCAAAAGGTCCAACACTGTAA 58.373 40.909 0.00 0.00 0.00 2.41
189 190 3.290948 AGCAAAAGGTCCAACACTGTA 57.709 42.857 0.00 0.00 0.00 2.74
190 191 2.143876 AGCAAAAGGTCCAACACTGT 57.856 45.000 0.00 0.00 0.00 3.55
191 192 4.853924 ATAAGCAAAAGGTCCAACACTG 57.146 40.909 0.00 0.00 0.00 3.66
192 193 6.969993 TTAATAAGCAAAAGGTCCAACACT 57.030 33.333 0.00 0.00 0.00 3.55
220 221 3.205338 TCGGAACAATGCATAGACCATG 58.795 45.455 0.00 0.00 37.73 3.66
225 226 2.916640 TGCATCGGAACAATGCATAGA 58.083 42.857 0.00 0.00 45.14 1.98
234 236 1.078918 CAGCCTCTGCATCGGAACA 60.079 57.895 5.65 0.00 41.13 3.18
291 293 1.739466 CAGGGAAATGACACATGGACG 59.261 52.381 0.00 0.00 0.00 4.79
319 321 0.106918 AGCGGGTCTTTGAACCAACA 60.107 50.000 2.41 0.00 39.88 3.33
333 335 1.376683 TTTCCACCATCGAAGCGGG 60.377 57.895 0.00 0.00 0.00 6.13
342 344 2.519013 GAGGCAAAGAGTTTCCACCAT 58.481 47.619 0.00 0.00 0.00 3.55
386 388 2.026945 TAATCGCTCTCCGCATGCCA 62.027 55.000 13.15 0.00 39.08 4.92
390 392 0.315568 GGAGTAATCGCTCTCCGCAT 59.684 55.000 0.00 0.00 40.36 4.73
414 416 4.082026 GTGCAATGCTCCAAGAAAATACCT 60.082 41.667 6.82 0.00 0.00 3.08
443 445 3.986817 ACCCATGTGATATATCCCCACAA 59.013 43.478 10.25 0.00 43.02 3.33
462 464 5.446260 TCTCTAAATCCCACCTTTTACCC 57.554 43.478 0.00 0.00 0.00 3.69
493 495 1.990799 TTCATGTACGACAAGCCTCG 58.009 50.000 0.00 0.00 39.68 4.63
507 509 4.970662 AAACGATTGGAGGTCATTCATG 57.029 40.909 0.00 0.00 0.00 3.07
556 558 2.240162 ATCCCAAACGACCGCTCCTC 62.240 60.000 0.00 0.00 0.00 3.71
578 580 9.597999 GCCAAACAAAATAAATCTTGAAATCAC 57.402 29.630 0.00 0.00 0.00 3.06
623 625 4.095782 CCGACCAACACCCAGTATTAAATG 59.904 45.833 0.00 0.00 0.00 2.32
689 694 5.483583 CCTTTATGGTGATCTTGGGGAAAAA 59.516 40.000 0.00 0.00 0.00 1.94
690 695 5.022787 CCTTTATGGTGATCTTGGGGAAAA 58.977 41.667 0.00 0.00 0.00 2.29
691 696 4.609301 CCTTTATGGTGATCTTGGGGAAA 58.391 43.478 0.00 0.00 0.00 3.13
692 697 3.627237 GCCTTTATGGTGATCTTGGGGAA 60.627 47.826 0.00 0.00 38.35 3.97
693 698 2.091885 GCCTTTATGGTGATCTTGGGGA 60.092 50.000 0.00 0.00 38.35 4.81
694 699 2.310538 GCCTTTATGGTGATCTTGGGG 58.689 52.381 0.00 0.00 38.35 4.96
695 700 2.310538 GGCCTTTATGGTGATCTTGGG 58.689 52.381 0.00 0.00 38.35 4.12
696 701 1.949525 CGGCCTTTATGGTGATCTTGG 59.050 52.381 0.00 0.00 38.35 3.61
697 702 1.949525 CCGGCCTTTATGGTGATCTTG 59.050 52.381 0.00 0.00 38.35 3.02
698 703 1.133792 CCCGGCCTTTATGGTGATCTT 60.134 52.381 0.00 0.00 38.35 2.40
699 704 0.474184 CCCGGCCTTTATGGTGATCT 59.526 55.000 0.00 0.00 38.35 2.75
700 705 0.472471 TCCCGGCCTTTATGGTGATC 59.528 55.000 0.00 0.00 38.35 2.92
701 706 0.474184 CTCCCGGCCTTTATGGTGAT 59.526 55.000 0.00 0.00 38.35 3.06
702 707 0.619255 TCTCCCGGCCTTTATGGTGA 60.619 55.000 0.00 0.00 38.35 4.02
703 708 0.463833 GTCTCCCGGCCTTTATGGTG 60.464 60.000 0.00 0.00 38.35 4.17
704 709 0.620700 AGTCTCCCGGCCTTTATGGT 60.621 55.000 0.00 0.00 38.35 3.55
714 719 2.363297 GGGCCTAATAGTCTCCCGG 58.637 63.158 0.84 0.00 0.00 5.73
833 1002 0.406750 GGGCATGGATGGATGGATGA 59.593 55.000 0.00 0.00 0.00 2.92
834 1003 0.408309 AGGGCATGGATGGATGGATG 59.592 55.000 0.00 0.00 0.00 3.51
835 1004 0.408309 CAGGGCATGGATGGATGGAT 59.592 55.000 0.00 0.00 0.00 3.41
836 1005 0.995132 ACAGGGCATGGATGGATGGA 60.995 55.000 3.46 0.00 0.00 3.41
865 1034 2.907897 CTAGGGTTCAAGCGCCGGAG 62.908 65.000 5.05 1.55 0.00 4.63
878 1047 1.221021 GCTACCGCTTTGCTAGGGT 59.779 57.895 0.00 0.00 35.13 4.34
896 1065 2.425143 TTAGGAGGGATTTGCTGCTG 57.575 50.000 0.00 0.00 0.00 4.41
936 1106 1.544314 GCTGGCAACTTTGTCTCCTCT 60.544 52.381 0.00 0.00 33.01 3.69
950 1120 3.650950 GAGGGTGGGAAGCTGGCA 61.651 66.667 0.00 0.00 0.00 4.92
1024 1194 4.509737 GTACCCGCTCGCCCTGTC 62.510 72.222 0.00 0.00 0.00 3.51
1209 1379 1.654137 GCTGCCAACAACGTTGTCG 60.654 57.895 32.36 22.85 41.31 4.35
1216 1386 2.639286 CTCCGTGCTGCCAACAAC 59.361 61.111 0.00 0.00 0.00 3.32
1250 1420 1.485943 GCGTCGACGAACCAGAAAC 59.514 57.895 39.74 15.89 43.02 2.78
1366 1536 2.379907 TGGATTTCTCAAAGGCTTCCCT 59.620 45.455 0.00 0.00 45.77 4.20
1367 1537 2.807676 TGGATTTCTCAAAGGCTTCCC 58.192 47.619 0.00 0.00 0.00 3.97
1368 1538 3.367806 GCTTGGATTTCTCAAAGGCTTCC 60.368 47.826 0.00 0.00 33.59 3.46
1369 1539 3.256631 TGCTTGGATTTCTCAAAGGCTTC 59.743 43.478 0.00 0.00 33.59 3.86
1370 1540 3.233507 TGCTTGGATTTCTCAAAGGCTT 58.766 40.909 0.00 0.00 33.59 4.35
1371 1541 2.880443 TGCTTGGATTTCTCAAAGGCT 58.120 42.857 0.00 0.00 33.59 4.58
1372 1542 3.446516 AGATGCTTGGATTTCTCAAAGGC 59.553 43.478 0.00 0.00 33.59 4.35
1373 1543 4.703575 TGAGATGCTTGGATTTCTCAAAGG 59.296 41.667 0.00 0.00 41.08 3.11
1374 1544 5.892160 TGAGATGCTTGGATTTCTCAAAG 57.108 39.130 0.00 0.00 41.08 2.77
1377 1547 4.019051 TCCTTGAGATGCTTGGATTTCTCA 60.019 41.667 0.00 0.00 42.01 3.27
1378 1548 4.521146 TCCTTGAGATGCTTGGATTTCTC 58.479 43.478 0.00 0.00 36.09 2.87
1379 1549 4.581309 TCCTTGAGATGCTTGGATTTCT 57.419 40.909 0.00 0.00 0.00 2.52
1380 1550 5.184340 CATCCTTGAGATGCTTGGATTTC 57.816 43.478 0.00 0.00 45.76 2.17
1398 1568 4.337555 CACCTGATTGTGAAGGAATCATCC 59.662 45.833 0.00 0.00 40.97 3.51
1399 1569 4.946157 ACACCTGATTGTGAAGGAATCATC 59.054 41.667 0.00 0.00 40.97 2.92
1400 1570 4.927049 ACACCTGATTGTGAAGGAATCAT 58.073 39.130 0.00 0.00 40.97 2.45
1401 1571 4.371624 ACACCTGATTGTGAAGGAATCA 57.628 40.909 0.00 0.00 39.57 2.57
1411 1581 3.953612 ACAACAATGTCACACCTGATTGT 59.046 39.130 0.00 0.00 33.41 2.71
1412 1582 4.572985 ACAACAATGTCACACCTGATTG 57.427 40.909 0.00 0.00 33.41 2.67
1430 1600 1.418264 TGGAGAACCCGTTGATGACAA 59.582 47.619 0.00 0.00 37.93 3.18
1431 1601 1.052617 TGGAGAACCCGTTGATGACA 58.947 50.000 0.00 0.00 37.93 3.58
1432 1602 1.439679 GTGGAGAACCCGTTGATGAC 58.560 55.000 0.00 0.00 37.93 3.06
1433 1603 0.323629 GGTGGAGAACCCGTTGATGA 59.676 55.000 0.00 0.00 44.02 2.92
1434 1604 2.854522 GGTGGAGAACCCGTTGATG 58.145 57.895 0.00 0.00 44.02 3.07
1443 1613 1.026718 CGGCCATCTTGGTGGAGAAC 61.027 60.000 2.24 0.00 42.02 3.01
1444 1614 1.198094 TCGGCCATCTTGGTGGAGAA 61.198 55.000 2.24 0.00 42.02 2.87
1445 1615 1.612146 TCGGCCATCTTGGTGGAGA 60.612 57.895 2.24 0.00 42.02 3.71
1446 1616 1.153289 CTCGGCCATCTTGGTGGAG 60.153 63.158 2.24 0.00 42.02 3.86
1447 1617 2.669133 CCTCGGCCATCTTGGTGGA 61.669 63.158 2.24 0.00 42.02 4.02
1448 1618 2.124570 CCTCGGCCATCTTGGTGG 60.125 66.667 2.24 0.00 40.46 4.61
1449 1619 2.825836 GCCTCGGCCATCTTGGTG 60.826 66.667 2.24 0.00 40.46 4.17
1450 1620 3.011517 AGCCTCGGCCATCTTGGT 61.012 61.111 2.24 0.00 40.46 3.67
1451 1621 2.515523 CAGCCTCGGCCATCTTGG 60.516 66.667 2.24 0.00 43.17 3.61
1452 1622 3.207669 GCAGCCTCGGCCATCTTG 61.208 66.667 2.24 0.00 43.17 3.02
1453 1623 3.406200 AGCAGCCTCGGCCATCTT 61.406 61.111 2.24 0.00 43.17 2.40
1454 1624 4.172512 CAGCAGCCTCGGCCATCT 62.173 66.667 2.24 0.00 43.17 2.90
1465 1635 1.301165 CAAACTTTGGGGCAGCAGC 60.301 57.895 0.00 0.00 41.10 5.25
1466 1636 0.465287 AACAAACTTTGGGGCAGCAG 59.535 50.000 6.47 0.00 34.12 4.24
1467 1637 0.908198 AAACAAACTTTGGGGCAGCA 59.092 45.000 6.47 0.00 34.12 4.41
1468 1638 1.581934 GAAACAAACTTTGGGGCAGC 58.418 50.000 6.47 0.00 34.12 5.25
1469 1639 1.202639 GGGAAACAAACTTTGGGGCAG 60.203 52.381 6.47 0.00 34.12 4.85
1470 1640 0.833949 GGGAAACAAACTTTGGGGCA 59.166 50.000 6.47 0.00 34.12 5.36
1471 1641 0.107831 GGGGAAACAAACTTTGGGGC 59.892 55.000 6.47 0.00 34.12 5.80
1472 1642 0.391228 CGGGGAAACAAACTTTGGGG 59.609 55.000 6.47 0.00 34.12 4.96
1473 1643 0.249699 GCGGGGAAACAAACTTTGGG 60.250 55.000 6.47 0.00 34.12 4.12
1474 1644 0.249699 GGCGGGGAAACAAACTTTGG 60.250 55.000 6.47 0.00 34.12 3.28
1475 1645 0.249699 GGGCGGGGAAACAAACTTTG 60.250 55.000 0.00 0.00 0.00 2.77
1476 1646 1.404479 GGGGCGGGGAAACAAACTTT 61.404 55.000 0.00 0.00 0.00 2.66
1477 1647 1.835267 GGGGCGGGGAAACAAACTT 60.835 57.895 0.00 0.00 0.00 2.66
1478 1648 2.203582 GGGGCGGGGAAACAAACT 60.204 61.111 0.00 0.00 0.00 2.66
1479 1649 3.307906 GGGGGCGGGGAAACAAAC 61.308 66.667 0.00 0.00 0.00 2.93
1480 1650 4.978705 CGGGGGCGGGGAAACAAA 62.979 66.667 0.00 0.00 0.00 2.83
1492 1662 4.078516 GTTCAGGTCGGACGGGGG 62.079 72.222 1.43 0.00 0.00 5.40
1493 1663 2.781595 CTTGTTCAGGTCGGACGGGG 62.782 65.000 1.43 0.00 0.00 5.73
1494 1664 1.374252 CTTGTTCAGGTCGGACGGG 60.374 63.158 1.43 0.00 0.00 5.28
1495 1665 2.027625 GCTTGTTCAGGTCGGACGG 61.028 63.158 1.43 0.00 0.00 4.79
1496 1666 1.300620 TGCTTGTTCAGGTCGGACG 60.301 57.895 1.43 0.00 0.00 4.79
1497 1667 1.228657 GGTGCTTGTTCAGGTCGGAC 61.229 60.000 0.00 0.00 0.00 4.79
1498 1668 1.070786 GGTGCTTGTTCAGGTCGGA 59.929 57.895 0.00 0.00 0.00 4.55
1499 1669 0.951040 GAGGTGCTTGTTCAGGTCGG 60.951 60.000 0.00 0.00 0.00 4.79
1500 1670 1.284982 CGAGGTGCTTGTTCAGGTCG 61.285 60.000 0.00 0.00 0.00 4.79
1501 1671 0.951040 CCGAGGTGCTTGTTCAGGTC 60.951 60.000 0.00 0.00 0.00 3.85
1502 1672 1.071471 CCGAGGTGCTTGTTCAGGT 59.929 57.895 0.00 0.00 0.00 4.00
1503 1673 2.328099 GCCGAGGTGCTTGTTCAGG 61.328 63.158 0.00 0.00 0.00 3.86
1504 1674 2.671177 CGCCGAGGTGCTTGTTCAG 61.671 63.158 0.00 0.00 0.00 3.02
1505 1675 2.664851 CGCCGAGGTGCTTGTTCA 60.665 61.111 0.00 0.00 0.00 3.18
1506 1676 2.171489 GAACGCCGAGGTGCTTGTTC 62.171 60.000 2.10 0.00 0.00 3.18
1507 1677 2.203153 AACGCCGAGGTGCTTGTT 60.203 55.556 2.10 0.00 0.00 2.83
1508 1678 2.665185 GAACGCCGAGGTGCTTGT 60.665 61.111 2.10 0.00 0.00 3.16
1509 1679 2.357517 AGAACGCCGAGGTGCTTG 60.358 61.111 2.10 0.00 0.00 4.01
1510 1680 2.048127 GAGAACGCCGAGGTGCTT 60.048 61.111 2.10 0.00 0.00 3.91
1511 1681 4.070552 GGAGAACGCCGAGGTGCT 62.071 66.667 2.10 0.00 0.00 4.40
1512 1682 2.221906 TAAGGAGAACGCCGAGGTGC 62.222 60.000 2.10 0.00 0.00 5.01
1513 1683 0.245539 TTAAGGAGAACGCCGAGGTG 59.754 55.000 0.46 0.46 0.00 4.00
1514 1684 0.531200 CTTAAGGAGAACGCCGAGGT 59.469 55.000 0.00 0.00 0.00 3.85
1515 1685 0.815734 TCTTAAGGAGAACGCCGAGG 59.184 55.000 1.85 0.00 0.00 4.63
1516 1686 1.469423 GGTCTTAAGGAGAACGCCGAG 60.469 57.143 1.85 0.00 35.79 4.63
1517 1687 0.529378 GGTCTTAAGGAGAACGCCGA 59.471 55.000 1.85 0.00 35.79 5.54
1518 1688 3.046280 GGTCTTAAGGAGAACGCCG 57.954 57.895 1.85 0.00 35.79 6.46
1522 1692 3.119065 CCCTTCTCGGTCTTAAGGAGAAC 60.119 52.174 14.89 1.99 42.01 3.01
1523 1693 3.097614 CCCTTCTCGGTCTTAAGGAGAA 58.902 50.000 16.83 16.83 42.01 2.87
1524 1694 2.736347 CCCTTCTCGGTCTTAAGGAGA 58.264 52.381 1.85 4.33 42.01 3.71
1525 1695 1.137282 GCCCTTCTCGGTCTTAAGGAG 59.863 57.143 1.85 1.87 42.01 3.69
1526 1696 1.192428 GCCCTTCTCGGTCTTAAGGA 58.808 55.000 1.85 0.00 42.01 3.36
1527 1697 0.179108 CGCCCTTCTCGGTCTTAAGG 60.179 60.000 1.85 0.00 39.63 2.69
1528 1698 0.806492 GCGCCCTTCTCGGTCTTAAG 60.806 60.000 0.00 0.00 0.00 1.85
1529 1699 1.217244 GCGCCCTTCTCGGTCTTAA 59.783 57.895 0.00 0.00 0.00 1.85
1530 1700 2.718073 GGCGCCCTTCTCGGTCTTA 61.718 63.158 18.11 0.00 0.00 2.10
1531 1701 4.083862 GGCGCCCTTCTCGGTCTT 62.084 66.667 18.11 0.00 0.00 3.01
1536 1706 4.514577 ACATCGGCGCCCTTCTCG 62.515 66.667 23.46 8.17 0.00 4.04
1537 1707 2.892425 CACATCGGCGCCCTTCTC 60.892 66.667 23.46 0.00 0.00 2.87
1538 1708 4.473520 CCACATCGGCGCCCTTCT 62.474 66.667 23.46 0.00 0.00 2.85
1539 1709 4.778143 ACCACATCGGCGCCCTTC 62.778 66.667 23.46 0.00 39.03 3.46
1543 1713 3.322706 GAAACACCACATCGGCGCC 62.323 63.158 19.07 19.07 39.03 6.53
1544 1714 2.175811 GAAACACCACATCGGCGC 59.824 61.111 0.00 0.00 39.03 6.53
1545 1715 2.474266 CGAAACACCACATCGGCG 59.526 61.111 0.00 0.00 39.03 6.46
1548 1718 0.237235 CAACCCGAAACACCACATCG 59.763 55.000 0.00 0.00 36.39 3.84
1549 1719 0.596082 CCAACCCGAAACACCACATC 59.404 55.000 0.00 0.00 0.00 3.06
1550 1720 1.460273 GCCAACCCGAAACACCACAT 61.460 55.000 0.00 0.00 0.00 3.21
1551 1721 2.122167 GCCAACCCGAAACACCACA 61.122 57.895 0.00 0.00 0.00 4.17
1552 1722 2.070654 CTGCCAACCCGAAACACCAC 62.071 60.000 0.00 0.00 0.00 4.16
1553 1723 1.826054 CTGCCAACCCGAAACACCA 60.826 57.895 0.00 0.00 0.00 4.17
1554 1724 1.826487 ACTGCCAACCCGAAACACC 60.826 57.895 0.00 0.00 0.00 4.16
1555 1725 1.098712 TCACTGCCAACCCGAAACAC 61.099 55.000 0.00 0.00 0.00 3.32
1556 1726 0.817634 CTCACTGCCAACCCGAAACA 60.818 55.000 0.00 0.00 0.00 2.83
1557 1727 0.534203 TCTCACTGCCAACCCGAAAC 60.534 55.000 0.00 0.00 0.00 2.78
1558 1728 0.534203 GTCTCACTGCCAACCCGAAA 60.534 55.000 0.00 0.00 0.00 3.46
1559 1729 1.070786 GTCTCACTGCCAACCCGAA 59.929 57.895 0.00 0.00 0.00 4.30
1560 1730 2.741092 GTCTCACTGCCAACCCGA 59.259 61.111 0.00 0.00 0.00 5.14
1561 1731 2.738521 CGTCTCACTGCCAACCCG 60.739 66.667 0.00 0.00 0.00 5.28
1562 1732 1.227853 AACGTCTCACTGCCAACCC 60.228 57.895 0.00 0.00 0.00 4.11
1563 1733 1.557443 CGAACGTCTCACTGCCAACC 61.557 60.000 0.00 0.00 0.00 3.77
1564 1734 1.853319 CGAACGTCTCACTGCCAAC 59.147 57.895 0.00 0.00 0.00 3.77
1565 1735 1.954146 GCGAACGTCTCACTGCCAA 60.954 57.895 0.00 0.00 0.00 4.52
1566 1736 2.355837 GCGAACGTCTCACTGCCA 60.356 61.111 0.00 0.00 0.00 4.92
1567 1737 3.112709 GGCGAACGTCTCACTGCC 61.113 66.667 0.00 0.00 35.04 4.85
1568 1738 3.470567 CGGCGAACGTCTCACTGC 61.471 66.667 0.00 0.00 37.93 4.40
1569 1739 3.470567 GCGGCGAACGTCTCACTG 61.471 66.667 12.98 0.00 46.52 3.66
1570 1740 3.973516 TGCGGCGAACGTCTCACT 61.974 61.111 12.98 0.00 46.52 3.41
1571 1741 3.764049 GTGCGGCGAACGTCTCAC 61.764 66.667 12.98 6.21 46.52 3.51
1572 1742 4.273257 TGTGCGGCGAACGTCTCA 62.273 61.111 12.98 0.00 46.52 3.27
1573 1743 3.764049 GTGTGCGGCGAACGTCTC 61.764 66.667 12.98 0.00 46.52 3.36
1578 1748 4.147322 CATCGGTGTGCGGCGAAC 62.147 66.667 12.09 12.09 0.00 3.95
1596 1766 4.933064 GATCGGGAGGCGAGCACG 62.933 72.222 0.00 0.00 42.93 5.34
1597 1767 4.933064 CGATCGGGAGGCGAGCAC 62.933 72.222 7.38 0.00 0.00 4.40
1609 1779 1.548973 GCACTGAATACCGGCGATCG 61.549 60.000 11.69 11.69 38.88 3.69
1610 1780 2.226269 GCACTGAATACCGGCGATC 58.774 57.895 9.30 1.41 0.00 3.69
1611 1781 4.438346 GCACTGAATACCGGCGAT 57.562 55.556 9.30 0.00 0.00 4.58
1613 1783 3.261951 CCGCACTGAATACCGGCG 61.262 66.667 0.00 0.00 46.61 6.46
1614 1784 1.883084 CTCCGCACTGAATACCGGC 60.883 63.158 0.00 0.00 40.49 6.13
1615 1785 1.883084 GCTCCGCACTGAATACCGG 60.883 63.158 0.00 0.00 41.97 5.28
1616 1786 0.872021 GAGCTCCGCACTGAATACCG 60.872 60.000 0.87 0.00 0.00 4.02
1617 1787 0.461961 AGAGCTCCGCACTGAATACC 59.538 55.000 10.93 0.00 0.00 2.73
1618 1788 2.197577 GAAGAGCTCCGCACTGAATAC 58.802 52.381 10.93 0.00 28.62 1.89
1619 1789 1.202302 CGAAGAGCTCCGCACTGAATA 60.202 52.381 10.93 0.00 28.62 1.75
1620 1790 0.459237 CGAAGAGCTCCGCACTGAAT 60.459 55.000 10.93 0.00 28.62 2.57
1621 1791 1.080501 CGAAGAGCTCCGCACTGAA 60.081 57.895 10.93 0.00 28.62 3.02
1622 1792 2.568612 CGAAGAGCTCCGCACTGA 59.431 61.111 10.93 0.00 28.62 3.41
1623 1793 2.507992 CCGAAGAGCTCCGCACTG 60.508 66.667 10.93 0.00 28.62 3.66
1624 1794 4.443266 GCCGAAGAGCTCCGCACT 62.443 66.667 10.93 0.00 0.00 4.40
1629 1799 2.512515 ATTGCGCCGAAGAGCTCC 60.513 61.111 10.93 0.00 32.71 4.70
1630 1800 1.361668 TTCATTGCGCCGAAGAGCTC 61.362 55.000 5.27 5.27 32.71 4.09
1631 1801 1.364626 CTTCATTGCGCCGAAGAGCT 61.365 55.000 20.59 0.00 40.94 4.09
1632 1802 1.061570 CTTCATTGCGCCGAAGAGC 59.938 57.895 20.59 0.00 40.94 4.09
1633 1803 0.740868 TCCTTCATTGCGCCGAAGAG 60.741 55.000 24.65 17.13 40.94 2.85
1634 1804 0.740868 CTCCTTCATTGCGCCGAAGA 60.741 55.000 24.65 13.95 40.94 2.87
1635 1805 1.709147 CCTCCTTCATTGCGCCGAAG 61.709 60.000 19.07 19.07 38.68 3.79
1636 1806 1.745115 CCTCCTTCATTGCGCCGAA 60.745 57.895 4.18 4.24 0.00 4.30
1637 1807 2.125147 CCTCCTTCATTGCGCCGA 60.125 61.111 4.18 0.00 0.00 5.54
1638 1808 3.204827 CCCTCCTTCATTGCGCCG 61.205 66.667 4.18 0.00 0.00 6.46
1639 1809 2.044946 ACCCTCCTTCATTGCGCC 60.045 61.111 4.18 0.00 0.00 6.53
1640 1810 2.409870 CCACCCTCCTTCATTGCGC 61.410 63.158 0.00 0.00 0.00 6.09
1641 1811 2.409870 GCCACCCTCCTTCATTGCG 61.410 63.158 0.00 0.00 0.00 4.85
1642 1812 1.304381 TGCCACCCTCCTTCATTGC 60.304 57.895 0.00 0.00 0.00 3.56
1643 1813 0.251297 TGTGCCACCCTCCTTCATTG 60.251 55.000 0.00 0.00 0.00 2.82
1644 1814 0.706433 ATGTGCCACCCTCCTTCATT 59.294 50.000 0.00 0.00 0.00 2.57
1645 1815 0.257039 GATGTGCCACCCTCCTTCAT 59.743 55.000 0.00 0.00 0.00 2.57
1646 1816 1.685224 GATGTGCCACCCTCCTTCA 59.315 57.895 0.00 0.00 0.00 3.02
1647 1817 1.077429 GGATGTGCCACCCTCCTTC 60.077 63.158 6.35 0.00 36.34 3.46
1648 1818 2.971598 CGGATGTGCCACCCTCCTT 61.972 63.158 10.69 0.00 35.94 3.36
1649 1819 3.402681 CGGATGTGCCACCCTCCT 61.403 66.667 10.69 0.00 35.94 3.69
1650 1820 4.489771 CCGGATGTGCCACCCTCC 62.490 72.222 0.00 3.98 35.94 4.30
1651 1821 3.391665 CTCCGGATGTGCCACCCTC 62.392 68.421 3.57 0.00 35.94 4.30
1652 1822 3.402681 CTCCGGATGTGCCACCCT 61.403 66.667 3.57 0.00 35.94 4.34
1653 1823 3.682292 GACTCCGGATGTGCCACCC 62.682 68.421 3.57 0.00 35.94 4.61
1654 1824 2.125106 GACTCCGGATGTGCCACC 60.125 66.667 3.57 0.00 35.94 4.61
1655 1825 0.464036 TATGACTCCGGATGTGCCAC 59.536 55.000 3.57 0.00 35.94 5.01
1656 1826 0.464036 GTATGACTCCGGATGTGCCA 59.536 55.000 3.57 1.36 35.94 4.92
1657 1827 0.464036 TGTATGACTCCGGATGTGCC 59.536 55.000 3.57 0.00 0.00 5.01
1658 1828 1.134818 TGTGTATGACTCCGGATGTGC 60.135 52.381 3.57 0.00 0.00 4.57
1659 1829 2.959507 TGTGTATGACTCCGGATGTG 57.040 50.000 3.57 0.00 0.00 3.21
1660 1830 4.470602 TCTATGTGTATGACTCCGGATGT 58.529 43.478 3.57 5.28 0.00 3.06
1661 1831 5.183904 TCATCTATGTGTATGACTCCGGATG 59.816 44.000 3.57 1.36 0.00 3.51
1662 1832 5.184096 GTCATCTATGTGTATGACTCCGGAT 59.816 44.000 3.57 0.00 45.52 4.18
1663 1833 4.519350 GTCATCTATGTGTATGACTCCGGA 59.481 45.833 2.93 2.93 45.52 5.14
1664 1834 4.799678 GTCATCTATGTGTATGACTCCGG 58.200 47.826 0.00 0.00 45.52 5.14
1670 1840 6.950619 AGCCTCTATGTCATCTATGTGTATGA 59.049 38.462 0.00 0.00 0.00 2.15
1671 1841 7.094032 TGAGCCTCTATGTCATCTATGTGTATG 60.094 40.741 0.00 0.00 0.00 2.39
1672 1842 6.950619 TGAGCCTCTATGTCATCTATGTGTAT 59.049 38.462 0.00 0.00 0.00 2.29
1673 1843 6.306987 TGAGCCTCTATGTCATCTATGTGTA 58.693 40.000 0.00 0.00 0.00 2.90
1674 1844 5.143369 TGAGCCTCTATGTCATCTATGTGT 58.857 41.667 0.00 0.00 0.00 3.72
1675 1845 5.336610 CCTGAGCCTCTATGTCATCTATGTG 60.337 48.000 0.00 0.00 0.00 3.21
1676 1846 4.771577 CCTGAGCCTCTATGTCATCTATGT 59.228 45.833 0.00 0.00 0.00 2.29
1677 1847 4.771577 ACCTGAGCCTCTATGTCATCTATG 59.228 45.833 0.00 0.00 0.00 2.23
1678 1848 4.771577 CACCTGAGCCTCTATGTCATCTAT 59.228 45.833 0.00 0.00 0.00 1.98
1679 1849 4.148079 CACCTGAGCCTCTATGTCATCTA 58.852 47.826 0.00 0.00 0.00 1.98
1680 1850 2.964464 CACCTGAGCCTCTATGTCATCT 59.036 50.000 0.00 0.00 0.00 2.90
1681 1851 2.697751 ACACCTGAGCCTCTATGTCATC 59.302 50.000 0.00 0.00 0.00 2.92
1682 1852 2.756907 ACACCTGAGCCTCTATGTCAT 58.243 47.619 0.00 0.00 0.00 3.06
1683 1853 2.238084 ACACCTGAGCCTCTATGTCA 57.762 50.000 0.00 0.00 0.00 3.58
1684 1854 2.497675 TGAACACCTGAGCCTCTATGTC 59.502 50.000 0.00 0.00 0.00 3.06
1685 1855 2.540383 TGAACACCTGAGCCTCTATGT 58.460 47.619 0.00 0.00 0.00 2.29
1686 1856 3.529533 CTTGAACACCTGAGCCTCTATG 58.470 50.000 0.00 0.00 0.00 2.23
1687 1857 2.503356 CCTTGAACACCTGAGCCTCTAT 59.497 50.000 0.00 0.00 0.00 1.98
1688 1858 1.902508 CCTTGAACACCTGAGCCTCTA 59.097 52.381 0.00 0.00 0.00 2.43
1689 1859 0.689623 CCTTGAACACCTGAGCCTCT 59.310 55.000 0.00 0.00 0.00 3.69
1690 1860 0.957888 GCCTTGAACACCTGAGCCTC 60.958 60.000 0.00 0.00 0.00 4.70
1691 1861 1.073897 GCCTTGAACACCTGAGCCT 59.926 57.895 0.00 0.00 0.00 4.58
1692 1862 2.328099 CGCCTTGAACACCTGAGCC 61.328 63.158 0.00 0.00 0.00 4.70
1693 1863 1.166531 AACGCCTTGAACACCTGAGC 61.167 55.000 0.00 0.00 0.00 4.26
1694 1864 0.588252 CAACGCCTTGAACACCTGAG 59.412 55.000 0.00 0.00 0.00 3.35
1695 1865 1.444119 GCAACGCCTTGAACACCTGA 61.444 55.000 0.00 0.00 0.00 3.86
1696 1866 1.008538 GCAACGCCTTGAACACCTG 60.009 57.895 0.00 0.00 0.00 4.00
1697 1867 1.152963 AGCAACGCCTTGAACACCT 60.153 52.632 0.00 0.00 0.00 4.00
1698 1868 1.166531 AGAGCAACGCCTTGAACACC 61.167 55.000 0.00 0.00 0.00 4.16
1699 1869 1.508632 TAGAGCAACGCCTTGAACAC 58.491 50.000 0.00 0.00 0.00 3.32
1700 1870 2.472695 ATAGAGCAACGCCTTGAACA 57.527 45.000 0.00 0.00 0.00 3.18
1701 1871 3.725010 CGAAATAGAGCAACGCCTTGAAC 60.725 47.826 0.00 0.00 0.00 3.18
1702 1872 2.415168 CGAAATAGAGCAACGCCTTGAA 59.585 45.455 0.00 0.00 0.00 2.69
1703 1873 1.999735 CGAAATAGAGCAACGCCTTGA 59.000 47.619 0.00 0.00 0.00 3.02
1704 1874 1.529826 GCGAAATAGAGCAACGCCTTG 60.530 52.381 0.00 0.00 42.79 3.61
1707 1877 4.976619 GCGAAATAGAGCAACGCC 57.023 55.556 0.00 0.00 42.79 5.68
1792 1962 1.134699 CATGTCATACCTGTCTGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
1908 2078 0.962356 ATGCCTTCTTCAGCCCAACG 60.962 55.000 0.00 0.00 0.00 4.10
1949 2119 4.428845 CTGCCCTCCAGTTTGCAT 57.571 55.556 0.00 0.00 36.79 3.96
2252 3890 4.467769 CCTGGAGAAATGCAATGGACTAT 58.532 43.478 0.00 0.00 0.00 2.12
2626 10873 3.330701 AGCCTGAGAGACTATCTAGAGGG 59.669 52.174 0.00 0.00 38.84 4.30
2882 11216 9.950680 ACTGTGATGTTAGTTTACAGATTTTTG 57.049 29.630 9.39 0.00 40.80 2.44
2987 11321 6.414732 TCCTAACAAATAACATGACCCTCTG 58.585 40.000 0.00 0.00 0.00 3.35
3004 11338 7.338449 GGGAATACAAGTTGCTTATTCCTAACA 59.662 37.037 27.77 0.00 43.33 2.41
3005 11339 7.338449 TGGGAATACAAGTTGCTTATTCCTAAC 59.662 37.037 27.77 19.00 43.33 2.34
3006 11340 7.406916 TGGGAATACAAGTTGCTTATTCCTAA 58.593 34.615 27.77 19.95 43.33 2.69
3007 11341 6.964464 TGGGAATACAAGTTGCTTATTCCTA 58.036 36.000 27.77 23.73 43.33 2.94
3008 11342 5.826643 TGGGAATACAAGTTGCTTATTCCT 58.173 37.500 27.77 4.94 43.33 3.36
3009 11343 6.321181 TCATGGGAATACAAGTTGCTTATTCC 59.679 38.462 24.35 24.35 43.17 3.01
3010 11344 7.333528 TCATGGGAATACAAGTTGCTTATTC 57.666 36.000 13.88 13.88 0.00 1.75
3011 11345 6.322201 CCTCATGGGAATACAAGTTGCTTATT 59.678 38.462 1.81 0.58 37.23 1.40
3012 11346 5.829924 CCTCATGGGAATACAAGTTGCTTAT 59.170 40.000 1.81 0.00 37.23 1.73
3013 11347 5.192927 CCTCATGGGAATACAAGTTGCTTA 58.807 41.667 1.81 0.00 37.23 3.09
3014 11348 4.019174 CCTCATGGGAATACAAGTTGCTT 58.981 43.478 1.81 0.00 37.23 3.91
3015 11349 3.624777 CCTCATGGGAATACAAGTTGCT 58.375 45.455 1.81 0.00 37.23 3.91
3016 11350 2.099756 GCCTCATGGGAATACAAGTTGC 59.900 50.000 1.81 0.00 37.23 4.17
3017 11351 2.689983 GGCCTCATGGGAATACAAGTTG 59.310 50.000 0.00 0.00 37.23 3.16
3018 11352 2.311542 TGGCCTCATGGGAATACAAGTT 59.688 45.455 3.32 0.00 37.23 2.66
3019 11353 1.922447 TGGCCTCATGGGAATACAAGT 59.078 47.619 3.32 0.00 37.23 3.16
3020 11354 2.734755 TGGCCTCATGGGAATACAAG 57.265 50.000 3.32 0.00 37.23 3.16
3021 11355 4.371624 CTATGGCCTCATGGGAATACAA 57.628 45.455 3.32 0.00 37.23 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.