Multiple sequence alignment - TraesCS1D01G095000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G095000 chr1D 100.000 2949 0 0 1 2949 80548943 80551891 0.000000e+00 5446.0
1 TraesCS1D01G095000 chr1D 85.816 705 71 12 1251 1952 80633658 80634336 0.000000e+00 721.0
2 TraesCS1D01G095000 chr1D 90.058 171 17 0 986 1156 80633448 80633618 3.830000e-54 222.0
3 TraesCS1D01G095000 chr1D 79.032 124 16 8 195 317 455518802 455518688 3.150000e-10 76.8
4 TraesCS1D01G095000 chr1B 89.075 1849 114 29 237 2037 133105339 133107147 0.000000e+00 2215.0
5 TraesCS1D01G095000 chr1B 84.348 920 119 18 2051 2949 16855194 16854279 0.000000e+00 878.0
6 TraesCS1D01G095000 chr1B 85.795 704 72 11 1251 1952 133429963 133430640 0.000000e+00 721.0
7 TraesCS1D01G095000 chr1B 88.889 171 19 0 986 1156 133429757 133429927 8.280000e-51 211.0
8 TraesCS1D01G095000 chr1A 90.482 1618 94 22 380 1949 99138352 99139957 0.000000e+00 2080.0
9 TraesCS1D01G095000 chr1A 84.538 692 83 14 1251 1940 99148947 99149616 0.000000e+00 664.0
10 TraesCS1D01G095000 chr1A 96.522 230 8 0 160 389 99137709 99137938 5.960000e-102 381.0
11 TraesCS1D01G095000 chr1A 97.110 173 5 0 1 173 513332077 513331905 2.870000e-75 292.0
12 TraesCS1D01G095000 chr1A 90.286 175 17 0 982 1156 99148732 99148906 2.290000e-56 230.0
13 TraesCS1D01G095000 chr7B 89.262 922 78 5 2048 2949 90800291 90801211 0.000000e+00 1134.0
14 TraesCS1D01G095000 chr7B 84.515 917 112 15 2053 2949 612892595 612891689 0.000000e+00 880.0
15 TraesCS1D01G095000 chr7B 82.653 98 16 1 560 656 627031737 627031834 5.240000e-13 86.1
16 TraesCS1D01G095000 chr7D 88.197 915 91 13 2048 2949 69533794 69534704 0.000000e+00 1075.0
17 TraesCS1D01G095000 chr7D 86.522 920 103 13 2048 2949 626046248 626045332 0.000000e+00 992.0
18 TraesCS1D01G095000 chr7D 84.416 924 109 11 2048 2949 161463146 161464056 0.000000e+00 876.0
19 TraesCS1D01G095000 chr7D 98.810 168 1 1 1 167 458702571 458702404 6.180000e-77 298.0
20 TraesCS1D01G095000 chr7D 96.111 180 3 4 1 177 552359178 552359000 1.030000e-74 291.0
21 TraesCS1D01G095000 chr6B 88.229 909 88 9 2048 2949 662248955 662249851 0.000000e+00 1068.0
22 TraesCS1D01G095000 chr2A 84.657 919 113 13 2037 2942 10488798 10489701 0.000000e+00 891.0
23 TraesCS1D01G095000 chr2A 97.688 173 1 3 1 171 79885615 79885786 7.990000e-76 294.0
24 TraesCS1D01G095000 chr2A 95.135 185 4 4 1 182 506534599 506534417 1.340000e-73 287.0
25 TraesCS1D01G095000 chr3B 84.649 925 104 15 2048 2949 322729885 322728976 0.000000e+00 887.0
26 TraesCS1D01G095000 chr3B 86.847 555 52 13 2404 2946 42076727 42076182 4.210000e-168 601.0
27 TraesCS1D01G095000 chr3B 86.847 555 52 13 2404 2946 42102600 42102055 4.210000e-168 601.0
28 TraesCS1D01G095000 chr3B 86.207 87 9 1 1530 1613 144057713 144057627 1.130000e-14 91.6
29 TraesCS1D01G095000 chr3B 85.556 90 10 1 1527 1613 144070259 144070348 1.130000e-14 91.6
30 TraesCS1D01G095000 chr7A 84.768 906 109 13 2053 2949 463290019 463290904 0.000000e+00 881.0
31 TraesCS1D01G095000 chr7A 83.664 655 82 3 2312 2949 166724533 166723887 7.040000e-166 593.0
32 TraesCS1D01G095000 chr5D 84.720 661 74 9 2307 2949 499236522 499237173 1.150000e-178 636.0
33 TraesCS1D01G095000 chr5D 98.235 170 2 1 1 169 283863198 283863367 2.220000e-76 296.0
34 TraesCS1D01G095000 chr6D 88.957 489 52 1 2048 2534 116864119 116864607 1.170000e-168 603.0
35 TraesCS1D01G095000 chr6D 88.432 389 42 3 2563 2949 116915045 116915432 1.600000e-127 466.0
36 TraesCS1D01G095000 chrUn 83.283 664 81 10 2307 2949 34091756 34091102 4.240000e-163 584.0
37 TraesCS1D01G095000 chrUn 83.283 664 81 10 2307 2949 291020313 291020967 4.240000e-163 584.0
38 TraesCS1D01G095000 chr6A 83.107 663 83 8 2307 2949 20279608 20280261 7.090000e-161 577.0
39 TraesCS1D01G095000 chr4A 98.810 168 1 1 1 167 45916721 45916554 6.180000e-77 298.0
40 TraesCS1D01G095000 chr3D 98.802 167 2 0 1 167 588359189 588359355 6.180000e-77 298.0
41 TraesCS1D01G095000 chr5A 96.591 176 4 2 1 175 258180870 258180696 1.030000e-74 291.0
42 TraesCS1D01G095000 chr5A 87.218 133 13 1 2406 2534 655498868 655499000 6.590000e-32 148.0
43 TraesCS1D01G095000 chr4B 86.207 87 9 1 1530 1613 50399898 50399812 1.130000e-14 91.6
44 TraesCS1D01G095000 chr4B 85.556 90 10 1 1527 1613 50443738 50443827 1.130000e-14 91.6
45 TraesCS1D01G095000 chr2D 78.873 142 22 6 503 640 89871630 89871767 4.050000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G095000 chr1D 80548943 80551891 2948 False 5446.0 5446 100.000 1 2949 1 chr1D.!!$F1 2948
1 TraesCS1D01G095000 chr1D 80633448 80634336 888 False 471.5 721 87.937 986 1952 2 chr1D.!!$F2 966
2 TraesCS1D01G095000 chr1B 133105339 133107147 1808 False 2215.0 2215 89.075 237 2037 1 chr1B.!!$F1 1800
3 TraesCS1D01G095000 chr1B 16854279 16855194 915 True 878.0 878 84.348 2051 2949 1 chr1B.!!$R1 898
4 TraesCS1D01G095000 chr1B 133429757 133430640 883 False 466.0 721 87.342 986 1952 2 chr1B.!!$F2 966
5 TraesCS1D01G095000 chr1A 99137709 99139957 2248 False 1230.5 2080 93.502 160 1949 2 chr1A.!!$F1 1789
6 TraesCS1D01G095000 chr1A 99148732 99149616 884 False 447.0 664 87.412 982 1940 2 chr1A.!!$F2 958
7 TraesCS1D01G095000 chr7B 90800291 90801211 920 False 1134.0 1134 89.262 2048 2949 1 chr7B.!!$F1 901
8 TraesCS1D01G095000 chr7B 612891689 612892595 906 True 880.0 880 84.515 2053 2949 1 chr7B.!!$R1 896
9 TraesCS1D01G095000 chr7D 69533794 69534704 910 False 1075.0 1075 88.197 2048 2949 1 chr7D.!!$F1 901
10 TraesCS1D01G095000 chr7D 626045332 626046248 916 True 992.0 992 86.522 2048 2949 1 chr7D.!!$R3 901
11 TraesCS1D01G095000 chr7D 161463146 161464056 910 False 876.0 876 84.416 2048 2949 1 chr7D.!!$F2 901
12 TraesCS1D01G095000 chr6B 662248955 662249851 896 False 1068.0 1068 88.229 2048 2949 1 chr6B.!!$F1 901
13 TraesCS1D01G095000 chr2A 10488798 10489701 903 False 891.0 891 84.657 2037 2942 1 chr2A.!!$F1 905
14 TraesCS1D01G095000 chr3B 322728976 322729885 909 True 887.0 887 84.649 2048 2949 1 chr3B.!!$R4 901
15 TraesCS1D01G095000 chr3B 42076182 42076727 545 True 601.0 601 86.847 2404 2946 1 chr3B.!!$R1 542
16 TraesCS1D01G095000 chr3B 42102055 42102600 545 True 601.0 601 86.847 2404 2946 1 chr3B.!!$R2 542
17 TraesCS1D01G095000 chr7A 463290019 463290904 885 False 881.0 881 84.768 2053 2949 1 chr7A.!!$F1 896
18 TraesCS1D01G095000 chr7A 166723887 166724533 646 True 593.0 593 83.664 2312 2949 1 chr7A.!!$R1 637
19 TraesCS1D01G095000 chr5D 499236522 499237173 651 False 636.0 636 84.720 2307 2949 1 chr5D.!!$F2 642
20 TraesCS1D01G095000 chrUn 34091102 34091756 654 True 584.0 584 83.283 2307 2949 1 chrUn.!!$R1 642
21 TraesCS1D01G095000 chrUn 291020313 291020967 654 False 584.0 584 83.283 2307 2949 1 chrUn.!!$F1 642
22 TraesCS1D01G095000 chr6A 20279608 20280261 653 False 577.0 577 83.107 2307 2949 1 chr6A.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 1283 0.326427 AGCTCTCCTCCCTCTGCATT 60.326 55.0 0.00 0.00 0.00 3.56 F
1159 1621 0.242017 CCTCTCCCGAAACGTACGTT 59.758 55.0 27.15 27.15 40.45 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 2287 0.396139 CGGCCACCAGGTAGTAGGTA 60.396 60.0 2.24 0.0 36.07 3.08 R
2161 2655 0.817634 GGCAAAACACAAAAGGCCCC 60.818 55.0 0.00 0.0 35.42 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.836821 CAAGTAGAGGCATACTAGTGACA 57.163 43.478 5.39 0.00 34.90 3.58
23 24 5.583495 CAAGTAGAGGCATACTAGTGACAC 58.417 45.833 5.39 0.00 34.90 3.67
24 25 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
25 26 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
26 27 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
27 28 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
28 29 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
29 30 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
30 31 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
31 32 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
32 33 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
33 34 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
34 35 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
35 36 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
36 37 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
37 38 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
38 39 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
39 40 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
40 41 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
41 42 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
42 43 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
43 44 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
44 45 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
45 46 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
46 47 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
47 48 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
48 49 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
49 50 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
50 51 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
51 52 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
52 53 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
54 55 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
56 57 9.480053 TGTCTATGTATTCACACATGTATCATG 57.520 33.333 0.00 7.99 39.46 3.07
57 58 9.481340 GTCTATGTATTCACACATGTATCATGT 57.519 33.333 9.21 9.21 39.46 3.21
61 62 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13
62 63 5.544136 TTCACACATGTATCATGTTTCCG 57.456 39.130 11.89 4.94 0.00 4.30
63 64 3.938334 TCACACATGTATCATGTTTCCGG 59.062 43.478 11.89 0.00 0.00 5.14
64 65 3.689161 CACACATGTATCATGTTTCCGGT 59.311 43.478 11.89 5.17 0.00 5.28
65 66 4.155826 CACACATGTATCATGTTTCCGGTT 59.844 41.667 11.89 0.00 0.00 4.44
66 67 5.352846 CACACATGTATCATGTTTCCGGTTA 59.647 40.000 11.89 0.00 0.00 2.85
67 68 5.941058 ACACATGTATCATGTTTCCGGTTAA 59.059 36.000 11.89 0.00 0.00 2.01
68 69 6.601613 ACACATGTATCATGTTTCCGGTTAAT 59.398 34.615 11.89 0.00 0.00 1.40
69 70 7.771361 ACACATGTATCATGTTTCCGGTTAATA 59.229 33.333 11.89 0.00 0.00 0.98
70 71 8.067784 CACATGTATCATGTTTCCGGTTAATAC 58.932 37.037 11.89 2.60 0.00 1.89
71 72 7.771361 ACATGTATCATGTTTCCGGTTAATACA 59.229 33.333 0.00 7.97 34.10 2.29
72 73 8.616942 CATGTATCATGTTTCCGGTTAATACAA 58.383 33.333 0.00 0.00 33.52 2.41
73 74 8.740123 TGTATCATGTTTCCGGTTAATACAAT 57.260 30.769 0.00 0.00 0.00 2.71
74 75 9.179909 TGTATCATGTTTCCGGTTAATACAATT 57.820 29.630 0.00 0.00 0.00 2.32
75 76 9.659830 GTATCATGTTTCCGGTTAATACAATTC 57.340 33.333 0.00 0.00 0.00 2.17
76 77 7.931578 TCATGTTTCCGGTTAATACAATTCT 57.068 32.000 0.00 0.00 0.00 2.40
77 78 9.621629 ATCATGTTTCCGGTTAATACAATTCTA 57.378 29.630 0.00 0.00 0.00 2.10
78 79 9.104965 TCATGTTTCCGGTTAATACAATTCTAG 57.895 33.333 0.00 0.00 0.00 2.43
79 80 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
80 81 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
81 82 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
82 83 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
83 84 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
84 85 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
85 86 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
86 87 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
144 145 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
156 157 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
157 158 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
158 159 4.505742 CCTCTAGGGCATATTTCCTTCACC 60.506 50.000 0.00 0.00 34.75 4.02
174 175 3.467226 CCCATACCCCGCGTGACT 61.467 66.667 4.92 0.00 0.00 3.41
191 192 6.471198 CGCGTGACTACACTATATTTCTTTGA 59.529 38.462 0.00 0.00 43.99 2.69
192 193 7.513196 CGCGTGACTACACTATATTTCTTTGAC 60.513 40.741 0.00 0.00 43.99 3.18
193 194 7.254017 GCGTGACTACACTATATTTCTTTGACC 60.254 40.741 0.00 0.00 43.99 4.02
348 349 8.845413 TTACAGCATGCATTATATACATGTGA 57.155 30.769 21.98 5.14 42.53 3.58
411 835 2.301346 CCTATTTGCACTAGGCCCTTG 58.699 52.381 0.00 0.00 43.89 3.61
428 852 2.292267 CTTGAAGATGCTATTGCCGGT 58.708 47.619 1.90 0.00 38.71 5.28
437 861 2.438021 TGCTATTGCCGGTCTTTATCCT 59.562 45.455 1.90 0.00 38.71 3.24
450 874 6.623549 CGGTCTTTATCCTCGTAAGTGTGTTA 60.624 42.308 0.00 0.00 39.48 2.41
486 910 3.634568 TGTTGTAGGTTCAAATTGCCG 57.365 42.857 0.00 0.00 0.00 5.69
550 974 4.248842 TGGCCGCCGGACATATGG 62.249 66.667 8.13 0.00 34.69 2.74
553 978 2.280797 CCGCCGGACATATGGGTG 60.281 66.667 5.05 5.43 0.00 4.61
562 987 3.431626 CGGACATATGGGTGTAGCTTTGA 60.432 47.826 7.80 0.00 31.16 2.69
588 1013 0.885196 GGCTTCCGCATTGGTGTTTA 59.115 50.000 0.00 0.00 39.52 2.01
642 1067 2.594303 CTGGTTTGCGGGTCAGCA 60.594 61.111 0.00 0.00 46.54 4.41
656 1081 1.484240 GTCAGCACTAGAGATGCCCTT 59.516 52.381 0.05 0.00 44.53 3.95
657 1082 1.759445 TCAGCACTAGAGATGCCCTTC 59.241 52.381 0.05 0.00 44.53 3.46
721 1147 0.755686 CAGCAGGGGAGACATAGTCC 59.244 60.000 0.00 0.00 32.18 3.85
784 1210 1.375523 GGTGGGTGGTCGTTGCTAG 60.376 63.158 0.00 0.00 0.00 3.42
811 1237 2.591715 GTGCGCTGTGGACTGGTT 60.592 61.111 9.73 0.00 35.76 3.67
853 1283 0.326427 AGCTCTCCTCCCTCTGCATT 60.326 55.000 0.00 0.00 0.00 3.56
911 1356 1.279558 TCGTCTCTCAGCTCCTGTACT 59.720 52.381 0.00 0.00 32.61 2.73
931 1376 6.492429 TGTACTGTCCGATACTTATAGGCATT 59.508 38.462 0.00 0.00 0.00 3.56
949 1401 4.321527 GGCATTAGAAACAGAGCTGCTTTT 60.322 41.667 2.53 0.00 0.00 2.27
976 1428 4.301072 AACAGAGCCTGCTAAATTACCA 57.699 40.909 0.00 0.00 34.37 3.25
1136 1598 1.311651 CGAGAGCAGAGGACTGAGCA 61.312 60.000 0.00 0.00 46.03 4.26
1159 1621 0.242017 CCTCTCCCGAAACGTACGTT 59.758 55.000 27.15 27.15 40.45 3.99
1166 1628 1.453148 CCGAAACGTACGTTGGTTCTC 59.547 52.381 32.31 23.33 38.47 2.87
1193 1655 0.314935 CAACCATCAACCACAGCACC 59.685 55.000 0.00 0.00 0.00 5.01
1222 1684 4.523083 TCTTAATCCCATTTTCCCGTGAG 58.477 43.478 0.00 0.00 0.00 3.51
1240 1703 4.563184 CGTGAGAAGTGTTATTAGTCAGGC 59.437 45.833 0.00 0.00 0.00 4.85
1345 1810 1.679305 GGAGGACGGAGAGCTGACA 60.679 63.158 0.00 0.00 0.00 3.58
1359 1825 3.027412 AGCTGACACTCTTCGGTATGAT 58.973 45.455 0.00 0.00 0.00 2.45
1373 1840 3.670523 CGGTATGATATTCACACGCTCAG 59.329 47.826 0.00 0.00 0.00 3.35
1395 1865 3.628942 GCACAAATCAGACCATAGCATCA 59.371 43.478 0.00 0.00 0.00 3.07
1396 1866 4.096833 GCACAAATCAGACCATAGCATCAA 59.903 41.667 0.00 0.00 0.00 2.57
1397 1867 5.732528 GCACAAATCAGACCATAGCATCAAG 60.733 44.000 0.00 0.00 0.00 3.02
1398 1868 5.356190 CACAAATCAGACCATAGCATCAAGT 59.644 40.000 0.00 0.00 0.00 3.16
1411 1899 8.773645 CCATAGCATCAAGTAAACGATGATTAA 58.226 33.333 3.65 0.00 41.28 1.40
1425 1914 8.831715 AACGATGATTAAATTTTCTTTTGCCT 57.168 26.923 0.00 0.00 0.00 4.75
1504 1993 2.736995 GTGCTCCGCAAGTACGCA 60.737 61.111 0.00 0.00 41.47 5.24
1505 1994 2.100631 GTGCTCCGCAAGTACGCAT 61.101 57.895 0.00 0.00 41.47 4.73
1506 1995 1.809619 TGCTCCGCAAGTACGCATC 60.810 57.895 0.00 0.00 34.76 3.91
1507 1996 2.860628 GCTCCGCAAGTACGCATCG 61.861 63.158 0.00 0.00 0.00 3.84
1508 1997 2.860628 CTCCGCAAGTACGCATCGC 61.861 63.158 0.00 0.00 0.00 4.58
1509 1998 3.925238 CCGCAAGTACGCATCGCC 61.925 66.667 0.00 0.00 0.00 5.54
1513 2002 1.153647 CAAGTACGCATCGCCAGGA 60.154 57.895 0.00 0.00 0.00 3.86
1519 2008 2.753966 CGCATCGCCAGGAACCAAG 61.754 63.158 0.00 0.00 0.00 3.61
1753 2245 4.129737 ACGCACGCATACCTCGCT 62.130 61.111 0.00 0.00 0.00 4.93
1795 2287 1.475682 GACCTCGTCCACTTCGGTATT 59.524 52.381 0.00 0.00 35.57 1.89
2015 2507 2.825861 TGGTCTTCGTCTGGTAAACC 57.174 50.000 0.00 0.00 0.00 3.27
2037 2529 4.733887 CCGAACATCGTACATTCAGTCTAC 59.266 45.833 0.00 0.00 38.40 2.59
2038 2530 5.448768 CCGAACATCGTACATTCAGTCTACT 60.449 44.000 0.00 0.00 38.40 2.57
2039 2531 6.238293 CCGAACATCGTACATTCAGTCTACTA 60.238 42.308 0.00 0.00 38.40 1.82
2040 2532 6.846786 CGAACATCGTACATTCAGTCTACTAG 59.153 42.308 0.00 0.00 34.72 2.57
2041 2533 7.254353 CGAACATCGTACATTCAGTCTACTAGA 60.254 40.741 0.00 0.00 34.72 2.43
2042 2534 7.860918 ACATCGTACATTCAGTCTACTAGAA 57.139 36.000 0.00 0.00 0.00 2.10
2043 2535 8.453238 ACATCGTACATTCAGTCTACTAGAAT 57.547 34.615 0.00 0.00 32.53 2.40
2044 2536 8.904834 ACATCGTACATTCAGTCTACTAGAATT 58.095 33.333 0.00 0.00 30.04 2.17
2074 2566 1.815421 CCTTGCTGCGCGGTTCTAT 60.815 57.895 19.23 0.00 0.00 1.98
2100 2593 8.595781 TTTTCTATCGTTATTTGTTCGATTGC 57.404 30.769 4.74 0.00 42.78 3.56
2161 2655 3.636300 TCAGGGGTTGTTGTTCATTTCAG 59.364 43.478 0.00 0.00 0.00 3.02
2169 2663 2.368548 GTTGTTCATTTCAGGGGCCTTT 59.631 45.455 0.84 0.00 0.00 3.11
2179 2673 0.180171 AGGGGCCTTTTGTGTTTTGC 59.820 50.000 0.84 0.00 0.00 3.68
2206 2700 4.772100 CCATAATTTTGGGGTGAGAACACT 59.228 41.667 7.02 0.00 45.32 3.55
2377 2876 2.350895 CATGTCCCGGACCTGCAA 59.649 61.111 15.24 0.00 0.00 4.08
2398 2899 8.453238 TGCAAAGTTAAACCATAGTACTTGAA 57.547 30.769 0.00 0.00 0.00 2.69
2401 2902 9.063615 CAAAGTTAAACCATAGTACTTGAAGGT 57.936 33.333 0.00 1.40 0.00 3.50
2500 3006 9.302345 CATCTACAACAATCGTACAACTCTATT 57.698 33.333 0.00 0.00 0.00 1.73
2572 3101 9.855021 AATAATGGTCTGCAATAACAGTAAAAC 57.145 29.630 0.00 0.00 38.84 2.43
2573 3102 5.351233 TGGTCTGCAATAACAGTAAAACG 57.649 39.130 0.00 0.00 38.84 3.60
2574 3103 4.817464 TGGTCTGCAATAACAGTAAAACGT 59.183 37.500 0.00 0.00 38.84 3.99
2575 3104 5.990386 TGGTCTGCAATAACAGTAAAACGTA 59.010 36.000 0.00 0.00 38.84 3.57
2576 3105 6.073657 TGGTCTGCAATAACAGTAAAACGTAC 60.074 38.462 0.00 0.00 38.84 3.67
2577 3106 6.073657 GGTCTGCAATAACAGTAAAACGTACA 60.074 38.462 0.00 0.00 38.84 2.90
2578 3107 7.346695 GTCTGCAATAACAGTAAAACGTACAA 58.653 34.615 0.00 0.00 38.84 2.41
2591 3120 1.298859 CGTACAAGGGCAGTGGAAGC 61.299 60.000 0.00 0.00 0.00 3.86
2648 3181 9.774742 CAAAGTATATGGCTTCTAGTTTTCAAC 57.225 33.333 0.00 0.00 0.00 3.18
2762 3303 5.067283 GGGAATGAAGCATGTTTATAACGGT 59.933 40.000 0.00 0.00 0.00 4.83
2916 3462 9.740239 CCTGATGACAATTAACCAAATTATCTG 57.260 33.333 0.00 0.00 35.54 2.90
2928 3475 6.815089 ACCAAATTATCTGCACAGAAAAACA 58.185 32.000 4.14 0.00 41.36 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
2 3 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
3 4 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
4 5 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
10 11 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
11 12 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
12 13 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
13 14 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
14 15 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
15 16 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
16 17 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
17 18 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
18 19 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
19 20 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
20 21 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
21 22 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
22 23 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
23 24 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
24 25 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
25 26 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
26 27 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
28 29 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
30 31 9.480053 CATGATACATGTGTGAATACATAGACA 57.520 33.333 9.11 0.00 39.17 3.41
31 32 9.481340 ACATGATACATGTGTGAATACATAGAC 57.519 33.333 15.11 0.00 39.17 2.59
35 36 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
36 37 7.201600 CGGAAACATGATACATGTGTGAATACA 60.202 37.037 16.29 0.00 34.63 2.29
37 38 7.125755 CGGAAACATGATACATGTGTGAATAC 58.874 38.462 16.29 1.40 31.80 1.89
38 39 6.259829 CCGGAAACATGATACATGTGTGAATA 59.740 38.462 16.29 0.00 31.80 1.75
39 40 5.066375 CCGGAAACATGATACATGTGTGAAT 59.934 40.000 16.29 0.00 31.80 2.57
40 41 4.394610 CCGGAAACATGATACATGTGTGAA 59.605 41.667 16.29 0.00 31.80 3.18
41 42 3.938334 CCGGAAACATGATACATGTGTGA 59.062 43.478 16.29 0.00 31.80 3.58
42 43 3.689161 ACCGGAAACATGATACATGTGTG 59.311 43.478 9.46 4.81 31.80 3.82
43 44 3.950397 ACCGGAAACATGATACATGTGT 58.050 40.909 9.46 11.88 31.80 3.72
44 45 4.963276 AACCGGAAACATGATACATGTG 57.037 40.909 9.46 7.59 31.80 3.21
45 46 7.771361 TGTATTAACCGGAAACATGATACATGT 59.229 33.333 9.46 10.94 0.00 3.21
46 47 8.148807 TGTATTAACCGGAAACATGATACATG 57.851 34.615 9.46 9.72 0.00 3.21
47 48 8.740123 TTGTATTAACCGGAAACATGATACAT 57.260 30.769 9.46 0.00 31.27 2.29
48 49 8.740123 ATTGTATTAACCGGAAACATGATACA 57.260 30.769 9.46 9.57 0.00 2.29
49 50 9.659830 GAATTGTATTAACCGGAAACATGATAC 57.340 33.333 9.46 7.13 0.00 2.24
50 51 9.621629 AGAATTGTATTAACCGGAAACATGATA 57.378 29.630 9.46 0.00 0.00 2.15
51 52 8.519799 AGAATTGTATTAACCGGAAACATGAT 57.480 30.769 9.46 0.00 0.00 2.45
52 53 7.931578 AGAATTGTATTAACCGGAAACATGA 57.068 32.000 9.46 0.00 0.00 3.07
53 54 7.855904 GCTAGAATTGTATTAACCGGAAACATG 59.144 37.037 9.46 0.00 0.00 3.21
54 55 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
55 56 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
56 57 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
57 58 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
58 59 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
59 60 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
60 61 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
135 136 4.505742 GGTGAAGGAAATATGCCCTAGAGG 60.506 50.000 0.00 0.00 39.47 3.69
136 137 4.505742 GGGTGAAGGAAATATGCCCTAGAG 60.506 50.000 0.00 0.00 31.36 2.43
137 138 3.394606 GGGTGAAGGAAATATGCCCTAGA 59.605 47.826 0.00 0.00 31.36 2.43
138 139 3.138283 TGGGTGAAGGAAATATGCCCTAG 59.862 47.826 0.00 0.00 35.79 3.02
139 140 3.127250 TGGGTGAAGGAAATATGCCCTA 58.873 45.455 0.00 0.00 35.79 3.53
140 141 1.929494 TGGGTGAAGGAAATATGCCCT 59.071 47.619 0.00 0.00 35.79 5.19
141 142 2.452600 TGGGTGAAGGAAATATGCCC 57.547 50.000 0.00 0.00 35.37 5.36
142 143 3.826729 GGTATGGGTGAAGGAAATATGCC 59.173 47.826 0.00 0.00 0.00 4.40
143 144 3.826729 GGGTATGGGTGAAGGAAATATGC 59.173 47.826 0.00 0.00 0.00 3.14
144 145 4.407365 GGGGTATGGGTGAAGGAAATATG 58.593 47.826 0.00 0.00 0.00 1.78
145 146 3.073946 CGGGGTATGGGTGAAGGAAATAT 59.926 47.826 0.00 0.00 0.00 1.28
146 147 2.440253 CGGGGTATGGGTGAAGGAAATA 59.560 50.000 0.00 0.00 0.00 1.40
147 148 1.214424 CGGGGTATGGGTGAAGGAAAT 59.786 52.381 0.00 0.00 0.00 2.17
148 149 0.621609 CGGGGTATGGGTGAAGGAAA 59.378 55.000 0.00 0.00 0.00 3.13
149 150 1.917336 GCGGGGTATGGGTGAAGGAA 61.917 60.000 0.00 0.00 0.00 3.36
150 151 2.372074 GCGGGGTATGGGTGAAGGA 61.372 63.158 0.00 0.00 0.00 3.36
151 152 2.192175 GCGGGGTATGGGTGAAGG 59.808 66.667 0.00 0.00 0.00 3.46
152 153 2.203015 CGCGGGGTATGGGTGAAG 60.203 66.667 0.00 0.00 0.00 3.02
153 154 3.004354 ACGCGGGGTATGGGTGAA 61.004 61.111 12.47 0.00 0.00 3.18
156 157 2.859525 TAGTCACGCGGGGTATGGGT 62.860 60.000 9.32 0.00 0.00 4.51
157 158 2.129146 TAGTCACGCGGGGTATGGG 61.129 63.158 9.32 0.00 0.00 4.00
158 159 1.066918 GTAGTCACGCGGGGTATGG 59.933 63.158 9.32 0.00 0.00 2.74
411 835 2.246719 AGACCGGCAATAGCATCTTC 57.753 50.000 0.00 0.00 44.61 2.87
428 852 8.058667 TGATAACACACTTACGAGGATAAAGA 57.941 34.615 0.00 0.00 0.00 2.52
437 861 7.823665 AGACTTGTATGATAACACACTTACGA 58.176 34.615 0.00 0.00 0.00 3.43
450 874 8.135382 ACCTACAACAACTAGACTTGTATGAT 57.865 34.615 0.00 0.00 33.03 2.45
486 910 7.835634 TTAAATAAATCCGACAAATTTGGGC 57.164 32.000 21.74 12.24 0.00 5.36
550 974 0.451783 CGGCCATTCAAAGCTACACC 59.548 55.000 2.24 0.00 0.00 4.16
553 978 1.032114 AGCCGGCCATTCAAAGCTAC 61.032 55.000 26.15 0.00 0.00 3.58
614 1039 1.237285 GCAAACCAGACACCGCATCT 61.237 55.000 0.00 0.00 0.00 2.90
656 1081 1.000486 CTTCTCCCTCACCCTCCGA 60.000 63.158 0.00 0.00 0.00 4.55
657 1082 0.614979 TTCTTCTCCCTCACCCTCCG 60.615 60.000 0.00 0.00 0.00 4.63
721 1147 3.265791 GCACACCCTATTCAAGAGTCAG 58.734 50.000 0.00 0.00 0.00 3.51
767 1193 0.034337 TTCTAGCAACGACCACCCAC 59.966 55.000 0.00 0.00 0.00 4.61
811 1237 8.591940 AGCTAATCAGATTTCTCATACAGCATA 58.408 33.333 0.00 0.00 0.00 3.14
853 1283 1.914764 GAACGGTAGGTGGGTGGGA 60.915 63.158 0.00 0.00 0.00 4.37
911 1356 7.770366 TTCTAATGCCTATAAGTATCGGACA 57.230 36.000 0.00 0.00 0.00 4.02
976 1428 4.614475 TCTCTCTCTCTCTCTCTCTCTGT 58.386 47.826 0.00 0.00 0.00 3.41
1119 1581 1.257055 GGTGCTCAGTCCTCTGCTCT 61.257 60.000 0.00 0.00 41.10 4.09
1131 1593 2.997315 CGGGAGAGGTGGTGCTCA 60.997 66.667 0.00 0.00 32.83 4.26
1136 1598 0.540365 TACGTTTCGGGAGAGGTGGT 60.540 55.000 0.00 0.00 41.75 4.16
1159 1621 0.687354 GGTTGAGCTCAGGAGAACCA 59.313 55.000 23.71 3.25 34.66 3.67
1166 1628 1.271543 TGGTTGATGGTTGAGCTCAGG 60.272 52.381 17.43 0.00 0.00 3.86
1193 1655 5.833667 GGGAAAATGGGATTAAGAAGGTAGG 59.166 44.000 0.00 0.00 0.00 3.18
1222 1684 3.522553 AGCGCCTGACTAATAACACTTC 58.477 45.455 2.29 0.00 0.00 3.01
1240 1703 6.918626 TGGAATGAGATAGAAGATTAGAGCG 58.081 40.000 0.00 0.00 0.00 5.03
1345 1810 5.520632 CGTGTGAATATCATACCGAAGAGT 58.479 41.667 2.30 0.00 35.43 3.24
1359 1825 2.162319 TTGTGCTGAGCGTGTGAATA 57.838 45.000 0.00 0.00 0.00 1.75
1373 1840 3.628942 TGATGCTATGGTCTGATTTGTGC 59.371 43.478 0.00 0.00 0.00 4.57
1425 1914 3.054166 CGGTGTGCGGATTAATCGATAA 58.946 45.455 9.32 0.00 0.00 1.75
1430 1919 2.228138 TACCGGTGTGCGGATTAATC 57.772 50.000 19.93 6.93 0.00 1.75
1454 1943 1.280886 GCGCGCGATTCTGAGATCAT 61.281 55.000 37.18 0.00 0.00 2.45
1455 1944 1.946156 GCGCGCGATTCTGAGATCA 60.946 57.895 37.18 0.00 0.00 2.92
1503 1992 2.409870 GCCTTGGTTCCTGGCGATG 61.410 63.158 9.61 0.00 37.11 3.84
1504 1993 2.044946 GCCTTGGTTCCTGGCGAT 60.045 61.111 9.61 0.00 37.11 4.58
1505 1994 4.344865 GGCCTTGGTTCCTGGCGA 62.345 66.667 15.55 0.00 46.97 5.54
1506 1995 4.659172 TGGCCTTGGTTCCTGGCG 62.659 66.667 3.32 0.00 46.97 5.69
1507 1996 2.991540 GTGGCCTTGGTTCCTGGC 60.992 66.667 3.32 14.39 45.42 4.85
1508 1997 2.283173 GGTGGCCTTGGTTCCTGG 60.283 66.667 3.32 0.00 0.00 4.45
1509 1998 2.484287 ATCGGTGGCCTTGGTTCCTG 62.484 60.000 3.32 0.00 0.00 3.86
1513 2002 1.299976 GAGATCGGTGGCCTTGGTT 59.700 57.895 3.32 0.00 0.00 3.67
1519 2008 1.152525 TCCTAGGAGATCGGTGGCC 60.153 63.158 7.62 0.00 0.00 5.36
1547 2039 0.179000 ACCATGGCTGATTCCTCGAC 59.821 55.000 13.04 0.00 0.00 4.20
1658 2150 3.429141 GACGACCTGGTCTCGCGA 61.429 66.667 23.49 9.26 34.34 5.87
1686 2178 3.296709 TTCTCCAGCTTCCCGACGC 62.297 63.158 0.00 0.00 0.00 5.19
1734 2226 2.954868 CGAGGTATGCGTGCGTCC 60.955 66.667 10.52 0.00 0.00 4.79
1744 2236 3.706594 TGAAGAAATCTCCAGCGAGGTAT 59.293 43.478 0.00 0.00 39.02 2.73
1753 2245 1.406069 GCGAGGCTGAAGAAATCTCCA 60.406 52.381 0.00 0.00 0.00 3.86
1795 2287 0.396139 CGGCCACCAGGTAGTAGGTA 60.396 60.000 2.24 0.00 36.07 3.08
2015 2507 5.570344 AGTAGACTGAATGTACGATGTTCG 58.430 41.667 0.00 0.00 46.93 3.95
2037 2529 5.557136 GCAAGGCGCGCATATATAATTCTAG 60.557 44.000 34.42 5.45 0.00 2.43
2038 2530 4.270084 GCAAGGCGCGCATATATAATTCTA 59.730 41.667 34.42 0.00 0.00 2.10
2039 2531 3.063997 GCAAGGCGCGCATATATAATTCT 59.936 43.478 34.42 13.58 0.00 2.40
2040 2532 3.354397 GCAAGGCGCGCATATATAATTC 58.646 45.455 34.42 11.21 0.00 2.17
2041 2533 3.405170 GCAAGGCGCGCATATATAATT 57.595 42.857 34.42 5.55 0.00 1.40
2074 2566 9.057365 GCAATCGAACAAATAACGATAGAAAAA 57.943 29.630 0.00 0.00 44.13 1.94
2094 2587 7.116948 AGGAATCTATTCGTGAATTAGCAATCG 59.883 37.037 0.00 0.00 37.67 3.34
2100 2593 7.571026 CAGCAAGGAATCTATTCGTGAATTAG 58.429 38.462 0.00 0.00 37.67 1.73
2161 2655 0.817634 GGCAAAACACAAAAGGCCCC 60.818 55.000 0.00 0.00 35.42 5.80
2169 2663 6.261826 CCAAAATTATGGAAGGCAAAACACAA 59.738 34.615 0.00 0.00 43.54 3.33
2179 2673 4.609301 TCTCACCCCAAAATTATGGAAGG 58.391 43.478 0.00 0.00 43.54 3.46
2229 2723 5.354767 TGATGATGTGTCTTAGCATCTGAC 58.645 41.667 0.00 0.00 41.33 3.51
2377 2876 8.434392 TGACCTTCAAGTACTATGGTTTAACTT 58.566 33.333 0.00 0.00 0.00 2.66
2445 2950 5.099042 ACAATCGGAAGCCTTAGTTATGT 57.901 39.130 0.00 0.00 0.00 2.29
2488 2994 8.556213 TGGTTGGTCAAATAATAGAGTTGTAC 57.444 34.615 0.00 0.00 34.68 2.90
2572 3101 1.298859 GCTTCCACTGCCCTTGTACG 61.299 60.000 0.00 0.00 0.00 3.67
2573 3102 1.298859 CGCTTCCACTGCCCTTGTAC 61.299 60.000 0.00 0.00 0.00 2.90
2574 3103 1.003839 CGCTTCCACTGCCCTTGTA 60.004 57.895 0.00 0.00 0.00 2.41
2575 3104 2.281761 CGCTTCCACTGCCCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
2576 3105 2.281761 ACGCTTCCACTGCCCTTG 60.282 61.111 0.00 0.00 0.00 3.61
2577 3106 2.281761 CACGCTTCCACTGCCCTT 60.282 61.111 0.00 0.00 0.00 3.95
2578 3107 2.337879 TTTCACGCTTCCACTGCCCT 62.338 55.000 0.00 0.00 0.00 5.19
2591 3120 2.811431 TGCAACTTCCAGGTATTTCACG 59.189 45.455 0.00 0.00 0.00 4.35
2648 3181 3.873361 ACTACGCATCTGAATGGTTGATG 59.127 43.478 0.00 0.00 40.16 3.07
2762 3303 6.398918 CATTTCCGTCTCTTCCTTTTAGAGA 58.601 40.000 0.00 0.00 44.35 3.10
2850 3392 8.686334 CAGCTGACCAAACCTTATTAATGTATT 58.314 33.333 8.42 0.00 0.00 1.89
2866 3408 3.334691 GCTTATGTACACAGCTGACCAA 58.665 45.455 23.35 4.56 0.00 3.67
2916 3462 9.661187 CAAGATGATATCTATGTTTTTCTGTGC 57.339 33.333 3.98 0.00 39.08 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.