Multiple sequence alignment - TraesCS1D01G094200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G094200 chr1D 100.000 8490 0 0 941 9430 79937568 79946057 0.000000e+00 15679.0
1 TraesCS1D01G094200 chr1D 86.927 3251 306 53 3133 6311 79809760 79812963 0.000000e+00 3539.0
2 TraesCS1D01G094200 chr1D 85.663 1123 95 28 1631 2713 79803195 79804291 0.000000e+00 1122.0
3 TraesCS1D01G094200 chr1D 91.156 735 53 6 7040 7765 79813701 79814432 0.000000e+00 987.0
4 TraesCS1D01G094200 chr1D 89.466 693 41 13 6311 6990 79813026 79813699 0.000000e+00 846.0
5 TraesCS1D01G094200 chr1D 89.466 693 33 19 7780 8460 79814543 79815207 0.000000e+00 839.0
6 TraesCS1D01G094200 chr1D 89.443 682 48 7 8769 9430 80000304 80000981 0.000000e+00 839.0
7 TraesCS1D01G094200 chr1D 100.000 428 0 0 1 428 79936628 79937055 0.000000e+00 791.0
8 TraesCS1D01G094200 chr1D 92.337 522 28 7 984 1495 79802079 79802598 0.000000e+00 732.0
9 TraesCS1D01G094200 chr1D 93.689 206 6 3 1 203 79757842 79758043 1.540000e-77 302.0
10 TraesCS1D01G094200 chr1D 80.637 408 47 18 1741 2132 328821808 328822199 4.310000e-73 287.0
11 TraesCS1D01G094200 chr1D 97.260 146 4 0 1486 1631 79803011 79803156 2.030000e-61 248.0
12 TraesCS1D01G094200 chr1D 88.966 145 12 3 8769 8913 80002315 80002455 9.730000e-40 176.0
13 TraesCS1D01G094200 chr1D 84.615 169 10 12 229 396 79781236 79781389 4.560000e-33 154.0
14 TraesCS1D01G094200 chr1D 100.000 36 0 0 392 427 79798850 79798885 6.110000e-07 67.6
15 TraesCS1D01G094200 chr1B 90.170 2238 142 44 6311 8520 131783015 131785202 0.000000e+00 2843.0
16 TraesCS1D01G094200 chr1B 84.998 2173 188 60 1631 3700 131457681 131459818 0.000000e+00 2080.0
17 TraesCS1D01G094200 chr1B 86.131 1990 203 28 3739 5701 131460040 131461983 0.000000e+00 2078.0
18 TraesCS1D01G094200 chr1B 83.080 1974 184 61 2304 4187 131777003 131778916 0.000000e+00 1657.0
19 TraesCS1D01G094200 chr1B 87.971 1222 79 30 7040 8245 131463141 131464310 0.000000e+00 1380.0
20 TraesCS1D01G094200 chr1B 93.478 920 41 10 8520 9430 131785415 131786324 0.000000e+00 1349.0
21 TraesCS1D01G094200 chr1B 86.270 925 107 11 4319 5240 131781298 131782205 0.000000e+00 987.0
22 TraesCS1D01G094200 chr1B 92.136 674 30 10 941 1610 131775694 131776348 0.000000e+00 929.0
23 TraesCS1D01G094200 chr1B 91.981 636 37 8 8520 9147 131496484 131497113 0.000000e+00 880.0
24 TraesCS1D01G094200 chr1B 93.581 592 21 11 941 1531 131457011 131457586 0.000000e+00 867.0
25 TraesCS1D01G094200 chr1B 89.339 666 43 12 6311 6969 131462474 131463118 0.000000e+00 811.0
26 TraesCS1D01G094200 chr1B 88.804 652 33 12 5687 6309 131782305 131782945 0.000000e+00 763.0
27 TraesCS1D01G094200 chr1B 87.408 683 60 8 8769 9430 131378566 131379243 0.000000e+00 761.0
28 TraesCS1D01G094200 chr1B 86.819 698 62 12 8759 9430 131128139 131128832 0.000000e+00 752.0
29 TraesCS1D01G094200 chr1B 90.280 535 37 3 8910 9430 130858180 130858713 0.000000e+00 686.0
30 TraesCS1D01G094200 chr1B 89.533 535 41 3 8910 9430 130792640 130793173 0.000000e+00 664.0
31 TraesCS1D01G094200 chr1B 92.237 438 18 6 5890 6313 131461993 131462428 2.910000e-169 606.0
32 TraesCS1D01G094200 chr1B 89.414 444 32 3 9001 9430 131582104 131582546 6.440000e-151 545.0
33 TraesCS1D01G094200 chr1B 94.643 224 4 5 1 224 131775084 131775299 3.260000e-89 340.0
34 TraesCS1D01G094200 chr1B 96.135 207 3 5 1 206 131456242 131456444 5.460000e-87 333.0
35 TraesCS1D01G094200 chr1B 94.258 209 9 3 8246 8454 131480173 131480378 5.500000e-82 316.0
36 TraesCS1D01G094200 chr1B 94.937 158 6 2 259 416 131775276 131775431 7.310000e-61 246.0
37 TraesCS1D01G094200 chr1B 94.118 153 5 3 275 427 131456436 131456584 7.370000e-56 230.0
38 TraesCS1D01G094200 chr1B 88.591 149 13 3 8770 8917 130794422 130794567 2.710000e-40 178.0
39 TraesCS1D01G094200 chr1B 87.179 156 12 7 8760 8913 131583783 131583932 4.530000e-38 171.0
40 TraesCS1D01G094200 chr1B 87.333 150 15 3 8769 8917 130859961 130860107 1.630000e-37 169.0
41 TraesCS1D01G094200 chr1B 94.681 94 4 1 5608 5701 131782198 131782290 2.740000e-30 145.0
42 TraesCS1D01G094200 chr1A 89.430 1561 139 10 4159 5701 98587608 98589160 0.000000e+00 1945.0
43 TraesCS1D01G094200 chr1A 89.362 1504 92 31 7040 8523 98590277 98591732 0.000000e+00 1829.0
44 TraesCS1D01G094200 chr1A 88.523 1429 117 21 2725 4120 98586193 98587607 0.000000e+00 1687.0
45 TraesCS1D01G094200 chr1A 92.079 1111 73 7 5890 6990 98589170 98590275 0.000000e+00 1550.0
46 TraesCS1D01G094200 chr1A 88.853 933 59 14 8520 9430 98600855 98601764 0.000000e+00 1105.0
47 TraesCS1D01G094200 chr1A 87.170 795 49 26 7617 8379 98515364 98516137 0.000000e+00 854.0
48 TraesCS1D01G094200 chr1A 94.605 519 14 5 1122 1631 98585017 98585530 0.000000e+00 791.0
49 TraesCS1D01G094200 chr1A 81.550 645 75 30 1631 2249 98585569 98586195 8.510000e-135 492.0
50 TraesCS1D01G094200 chr1A 87.764 237 9 3 1 231 98584273 98584495 9.390000e-65 259.0
51 TraesCS1D01G094200 chr1A 92.697 178 5 6 251 427 98584463 98584633 5.650000e-62 250.0
52 TraesCS1D01G094200 chr1A 87.681 138 9 5 941 1070 98584870 98585007 4.560000e-33 154.0
53 TraesCS1D01G094200 chr3A 88.823 671 60 5 8769 9430 154738998 154739662 0.000000e+00 809.0
54 TraesCS1D01G094200 chr3D 87.964 673 55 10 8769 9430 136772557 136773214 0.000000e+00 771.0
55 TraesCS1D01G094200 chr3D 94.872 39 1 1 3538 3575 68250482 68250444 1.020000e-04 60.2
56 TraesCS1D01G094200 chr3B 87.779 671 59 8 8769 9430 199925122 199925778 0.000000e+00 763.0
57 TraesCS1D01G094200 chr3B 87.462 662 63 10 8769 9430 199700267 199700908 0.000000e+00 745.0
58 TraesCS1D01G094200 chr3B 82.787 366 41 11 1786 2134 202513120 202512760 3.310000e-79 307.0
59 TraesCS1D01G094200 chr3B 77.737 274 50 11 1830 2096 704257761 704258030 3.530000e-34 158.0
60 TraesCS1D01G094200 chr4D 82.031 384 44 14 1741 2111 503567646 503568017 4.280000e-78 303.0
61 TraesCS1D01G094200 chr4D 80.867 392 47 12 1734 2110 4102227 4102605 5.570000e-72 283.0
62 TraesCS1D01G094200 chr7B 80.282 355 47 13 1774 2113 266573886 266573540 7.310000e-61 246.0
63 TraesCS1D01G094200 chr5B 83.500 200 29 4 1750 1949 593555012 593555207 5.820000e-42 183.0
64 TraesCS1D01G094200 chr6D 81.696 224 31 8 1749 1967 123124742 123124524 2.710000e-40 178.0
65 TraesCS1D01G094200 chr5A 77.532 316 51 16 1809 2110 103746867 103747176 1.260000e-38 172.0
66 TraesCS1D01G094200 chr7A 80.296 203 24 9 1750 1949 641229778 641229589 1.280000e-28 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G094200 chr1D 79936628 79946057 9429 False 8235.000000 15679 100.00000 1 9430 2 chr1D.!!$F6 9429
1 TraesCS1D01G094200 chr1D 79809760 79815207 5447 False 1552.750000 3539 89.25375 3133 8460 4 chr1D.!!$F5 5327
2 TraesCS1D01G094200 chr1D 79798850 79804291 5441 False 542.400000 1122 93.81500 392 2713 4 chr1D.!!$F4 2321
3 TraesCS1D01G094200 chr1D 80000304 80002455 2151 False 507.500000 839 89.20450 8769 9430 2 chr1D.!!$F7 661
4 TraesCS1D01G094200 chr1B 131456242 131464310 8068 False 1048.125000 2080 90.56375 1 8245 8 chr1B.!!$F7 8244
5 TraesCS1D01G094200 chr1B 131775084 131786324 11240 False 1028.777778 2843 90.91100 1 9430 9 chr1B.!!$F9 9429
6 TraesCS1D01G094200 chr1B 131496484 131497113 629 False 880.000000 880 91.98100 8520 9147 1 chr1B.!!$F4 627
7 TraesCS1D01G094200 chr1B 131378566 131379243 677 False 761.000000 761 87.40800 8769 9430 1 chr1B.!!$F2 661
8 TraesCS1D01G094200 chr1B 131128139 131128832 693 False 752.000000 752 86.81900 8759 9430 1 chr1B.!!$F1 671
9 TraesCS1D01G094200 chr1B 130858180 130860107 1927 False 427.500000 686 88.80650 8769 9430 2 chr1B.!!$F6 661
10 TraesCS1D01G094200 chr1B 130792640 130794567 1927 False 421.000000 664 89.06200 8770 9430 2 chr1B.!!$F5 660
11 TraesCS1D01G094200 chr1B 131582104 131583932 1828 False 358.000000 545 88.29650 8760 9430 2 chr1B.!!$F8 670
12 TraesCS1D01G094200 chr1A 98600855 98601764 909 False 1105.000000 1105 88.85300 8520 9430 1 chr1A.!!$F2 910
13 TraesCS1D01G094200 chr1A 98584273 98591732 7459 False 995.222222 1945 89.29900 1 8523 9 chr1A.!!$F3 8522
14 TraesCS1D01G094200 chr1A 98515364 98516137 773 False 854.000000 854 87.17000 7617 8379 1 chr1A.!!$F1 762
15 TraesCS1D01G094200 chr3A 154738998 154739662 664 False 809.000000 809 88.82300 8769 9430 1 chr3A.!!$F1 661
16 TraesCS1D01G094200 chr3D 136772557 136773214 657 False 771.000000 771 87.96400 8769 9430 1 chr3D.!!$F1 661
17 TraesCS1D01G094200 chr3B 199925122 199925778 656 False 763.000000 763 87.77900 8769 9430 1 chr3B.!!$F2 661
18 TraesCS1D01G094200 chr3B 199700267 199700908 641 False 745.000000 745 87.46200 8769 9430 1 chr3B.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 345 1.001181 TCGGTTAGTGCTTGGTGGTAC 59.999 52.381 0.00 0.0 0.00 3.34 F
999 3919 0.388649 AGCGCAAGACTACCAACTCG 60.389 55.000 11.47 0.0 43.02 4.18 F
2637 6145 0.038166 TGGAGTGGGAATCAAGGCAC 59.962 55.000 0.00 0.0 0.00 5.01 F
3859 7664 0.388907 CGTCCAACCGGTTCGTACAT 60.389 55.000 19.24 0.0 0.00 2.29 F
5774 11896 0.030101 ACAAAATCACGTGTTGGCGG 59.970 50.000 16.51 5.0 35.98 6.13 F
5775 11897 1.007849 AAAATCACGTGTTGGCGGC 60.008 52.632 16.51 0.0 35.98 6.53 F
7425 13704 0.532862 CAACAACGCCCTGAGACAGT 60.533 55.000 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 5172 0.178990 GAGCTCCAAACACCCCACTT 60.179 55.000 0.87 0.0 0.00 3.16 R
2881 6422 0.032515 TCCACTCCGAGGAATGGCTA 60.033 55.000 14.30 0.0 40.90 3.93 R
4519 10589 0.105039 CCCACGGAGCAGGTAATCTC 59.895 60.000 0.00 0.0 0.00 2.75 R
5788 11910 0.319641 GGAGGGTGACGCGGATTATC 60.320 60.000 12.47 0.0 0.00 1.75 R
6954 13218 0.109919 CCGTGTCGATCTCGTTGTCA 60.110 55.000 0.00 0.0 40.80 3.58 R
7433 13712 1.079336 GTAGGACCTGGTGTTCGGC 60.079 63.158 2.82 0.0 0.00 5.54 R
8719 15375 0.331616 ATCTGTAGCCACAAACCCCC 59.668 55.000 0.00 0.0 33.22 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 3.716353 TCTGCAGCCCTAGATTTGGAATA 59.284 43.478 9.47 0.00 0.00 1.75
180 187 1.141881 CCTAGCTAGCCCACACACG 59.858 63.158 15.74 0.00 0.00 4.49
206 213 3.191791 GCCTTACGTCTGAGTCTCTTCTT 59.808 47.826 0.00 0.00 0.00 2.52
210 217 2.224917 ACGTCTGAGTCTCTTCTTCCCT 60.225 50.000 0.65 0.00 0.00 4.20
213 220 3.694566 GTCTGAGTCTCTTCTTCCCTCTC 59.305 52.174 0.65 0.00 0.00 3.20
222 229 4.111577 TCTTCTTCCCTCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
225 232 3.711704 TCTTCCCTCTCTCTCTCTCTCTC 59.288 52.174 0.00 0.00 0.00 3.20
226 233 3.421394 TCCCTCTCTCTCTCTCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
227 234 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
228 235 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
229 236 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
230 237 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
231 238 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
232 239 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
233 240 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
234 241 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
235 242 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
236 243 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
237 244 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
238 245 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
239 246 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
240 247 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
241 248 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
242 249 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
243 250 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
244 251 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
245 252 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
246 253 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
247 254 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
248 255 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
249 256 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
250 257 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
251 258 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
252 259 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
253 260 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
254 261 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
255 262 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
256 263 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
257 264 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
258 265 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
259 266 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
260 267 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
261 268 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
262 269 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
282 289 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
286 293 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
293 300 1.064621 CTCTCTCTCTGCGCTGCTC 59.935 63.158 9.73 0.00 0.00 4.26
338 345 1.001181 TCGGTTAGTGCTTGGTGGTAC 59.999 52.381 0.00 0.00 0.00 3.34
427 442 3.911964 CGTCCTTTGCAACGAAAATAAGG 59.088 43.478 4.19 3.84 41.29 2.69
999 3919 0.388649 AGCGCAAGACTACCAACTCG 60.389 55.000 11.47 0.00 43.02 4.18
1011 3931 0.539051 CCAACTCGAGCTCCATCCTT 59.461 55.000 13.61 0.00 0.00 3.36
1058 3999 8.948145 GCATAATTGCTTCATCTATCTTGATCT 58.052 33.333 0.00 0.00 45.77 2.75
1061 4002 8.749026 AATTGCTTCATCTATCTTGATCTGTT 57.251 30.769 0.00 0.00 0.00 3.16
1062 4003 7.783090 TTGCTTCATCTATCTTGATCTGTTC 57.217 36.000 0.00 0.00 0.00 3.18
1063 4004 6.881570 TGCTTCATCTATCTTGATCTGTTCA 58.118 36.000 0.00 0.00 0.00 3.18
1064 4005 7.506971 TGCTTCATCTATCTTGATCTGTTCAT 58.493 34.615 0.00 0.00 33.34 2.57
1065 4006 7.441458 TGCTTCATCTATCTTGATCTGTTCATG 59.559 37.037 0.00 0.00 33.34 3.07
1069 4010 6.475596 TCTATCTTGATCTGTTCATGCTCA 57.524 37.500 0.00 0.00 33.34 4.26
1070 4011 6.279123 TCTATCTTGATCTGTTCATGCTCAC 58.721 40.000 0.00 0.00 33.34 3.51
1071 4012 4.276058 TCTTGATCTGTTCATGCTCACA 57.724 40.909 0.00 0.00 33.34 3.58
1072 4013 4.644498 TCTTGATCTGTTCATGCTCACAA 58.356 39.130 0.00 0.00 33.34 3.33
1073 4014 4.694037 TCTTGATCTGTTCATGCTCACAAG 59.306 41.667 0.00 0.00 33.34 3.16
1074 4015 4.011966 TGATCTGTTCATGCTCACAAGT 57.988 40.909 0.00 0.00 0.00 3.16
1075 4016 3.749609 TGATCTGTTCATGCTCACAAGTG 59.250 43.478 0.00 0.00 0.00 3.16
1078 4019 3.561310 TCTGTTCATGCTCACAAGTGTTC 59.439 43.478 0.00 0.00 0.00 3.18
1473 4426 1.594397 GTTTGCAGCTTTTCTTGCACC 59.406 47.619 0.00 0.00 36.98 5.01
1647 5068 0.878961 AGCCGTCGTGAAAGGTGTTC 60.879 55.000 0.00 0.00 0.00 3.18
1690 5111 9.529823 TTTGTATCTTTTCTAGTACTCTCTCCA 57.470 33.333 0.00 0.00 0.00 3.86
1905 5354 8.397906 TCAGGATGAAATACTTTAAAATGCGAG 58.602 33.333 0.00 0.00 45.97 5.03
1907 5356 6.417930 GGATGAAATACTTTAAAATGCGAGCC 59.582 38.462 0.00 0.00 0.00 4.70
1908 5357 6.260870 TGAAATACTTTAAAATGCGAGCCA 57.739 33.333 0.00 0.00 0.00 4.75
1955 5405 7.500559 GGACTTTGAGGATAAATAGTGCATCTT 59.499 37.037 0.00 0.00 0.00 2.40
2041 5519 9.923143 TGTGCATTATGTACCTAAGTATATGTC 57.077 33.333 10.69 0.00 32.98 3.06
2120 5600 4.124943 CATGGAGGCCAGGCTGCT 62.125 66.667 12.43 0.00 36.75 4.24
2140 5620 4.600032 GCTTTGGGCATTTTTGTCAAAAG 58.400 39.130 10.50 3.60 41.35 2.27
2143 5623 6.624642 GCTTTGGGCATTTTTGTCAAAAGAAA 60.625 34.615 10.77 0.00 41.35 2.52
2144 5624 6.824305 TTGGGCATTTTTGTCAAAAGAAAA 57.176 29.167 10.50 0.00 35.30 2.29
2145 5625 6.188400 TGGGCATTTTTGTCAAAAGAAAAC 57.812 33.333 10.50 4.56 35.30 2.43
2146 5626 5.163814 TGGGCATTTTTGTCAAAAGAAAACG 60.164 36.000 10.50 0.16 35.30 3.60
2149 5629 7.413109 GGGCATTTTTGTCAAAAGAAAACGTTA 60.413 33.333 10.50 0.00 35.30 3.18
2220 5700 8.321716 CGTAAGAGTAGCACACTTCAATATTTC 58.678 37.037 3.18 0.00 37.72 2.17
2261 5744 9.806203 ACACATGTATCAAACCAATATTCAATG 57.194 29.630 0.00 0.00 0.00 2.82
2332 5815 9.056005 CATTCTCCGAATTCCATAGAACATAAA 57.944 33.333 11.77 0.00 33.97 1.40
2345 5828 7.537306 CCATAGAACATAAACCAAGAACAAACG 59.463 37.037 0.00 0.00 0.00 3.60
2427 5910 6.262496 TCATCCTATCGATAAAGAGAACACGT 59.738 38.462 6.58 0.00 0.00 4.49
2485 5968 6.525578 TCACTATAAGGTAAGTGACACCTG 57.474 41.667 0.84 0.00 45.90 4.00
2495 5978 1.135373 AGTGACACCTGATCGCTTACG 60.135 52.381 0.84 0.00 33.04 3.18
2530 6013 3.724732 ATTTTAAGAAGGGTACGGGCA 57.275 42.857 0.00 0.00 0.00 5.36
2553 6036 5.357314 CACTCCAAGTATCTCTCGGTTTCTA 59.643 44.000 0.00 0.00 0.00 2.10
2607 6115 1.595093 GAACCGTGGGGCCAAATGAG 61.595 60.000 4.39 0.00 36.48 2.90
2633 6141 3.441572 GTCACAATGGAGTGGGAATCAAG 59.558 47.826 0.00 0.00 39.93 3.02
2637 6145 0.038166 TGGAGTGGGAATCAAGGCAC 59.962 55.000 0.00 0.00 0.00 5.01
2642 6150 2.025887 AGTGGGAATCAAGGCACTAAGG 60.026 50.000 0.00 0.00 38.49 2.69
2651 6159 0.617820 AGGCACTAAGGGTCCGTCAT 60.618 55.000 0.00 0.00 36.02 3.06
2695 6203 3.423154 GCGTCGGCAAAGTCCCAG 61.423 66.667 0.00 0.00 39.62 4.45
2713 6248 5.476945 GTCCCAGTTGTTATCATGGAGTTTT 59.523 40.000 0.00 0.00 34.60 2.43
2724 6259 3.055891 TCATGGAGTTTTGAGATGCGAGA 60.056 43.478 0.00 0.00 0.00 4.04
2738 6273 1.342174 TGCGAGAAAACGGTCCTAAGT 59.658 47.619 0.00 0.00 0.00 2.24
2741 6276 3.366781 GCGAGAAAACGGTCCTAAGTAGT 60.367 47.826 0.00 0.00 0.00 2.73
2784 6320 2.733298 TATAAGGGGCCCATGCTCTA 57.267 50.000 27.72 5.98 38.37 2.43
2793 6329 1.463674 CCCATGCTCTAACCACCAAC 58.536 55.000 0.00 0.00 0.00 3.77
2881 6422 7.934120 CCTAATCTTAACGAAGGATTTCCAGAT 59.066 37.037 0.00 0.00 38.89 2.90
2986 6544 3.127030 GCTAGGTTGAGAAATTTCCCACG 59.873 47.826 14.61 5.31 0.00 4.94
2988 6546 3.827722 AGGTTGAGAAATTTCCCACGAA 58.172 40.909 14.61 0.00 0.00 3.85
3033 6595 2.885135 TGATGGAAGTGTTGATGGCT 57.115 45.000 0.00 0.00 0.00 4.75
3034 6596 3.159213 TGATGGAAGTGTTGATGGCTT 57.841 42.857 0.00 0.00 0.00 4.35
3117 6685 2.007608 GGTGCTTATCGAAACCCTCAC 58.992 52.381 0.00 0.00 0.00 3.51
3213 6793 5.074115 TCCCAAACGAACTGAATTTACCAT 58.926 37.500 0.00 0.00 0.00 3.55
3214 6794 5.048364 TCCCAAACGAACTGAATTTACCATG 60.048 40.000 0.00 0.00 0.00 3.66
3222 6802 4.929479 ACTGAATTTACCATGCCAAGGTA 58.071 39.130 0.00 0.00 40.54 3.08
3238 6818 3.508845 AGGTACCACTCTGCATGTTTT 57.491 42.857 15.94 0.00 0.00 2.43
3239 6819 3.832527 AGGTACCACTCTGCATGTTTTT 58.167 40.909 15.94 0.00 0.00 1.94
3249 6829 5.348451 ACTCTGCATGTTTTTCACACAAAAC 59.652 36.000 0.00 2.70 43.96 2.43
3412 7019 8.829373 ATAAAGAAGAAGGTTTATGCCTCAAT 57.171 30.769 0.00 0.00 38.03 2.57
3438 7046 4.787551 TGGAAAACAAAAGCCTACTCTCA 58.212 39.130 0.00 0.00 0.00 3.27
3441 7049 4.773323 AAACAAAAGCCTACTCTCATGC 57.227 40.909 0.00 0.00 0.00 4.06
3523 7131 5.718724 TGTGTGCAATGATTATGTTTGGA 57.281 34.783 0.00 0.00 0.00 3.53
3533 7141 8.849168 CAATGATTATGTTTGGAATAGTAGGCA 58.151 33.333 0.00 0.00 0.00 4.75
3569 7177 3.760151 CCTTGCATTTCTCTCATTCCACA 59.240 43.478 0.00 0.00 0.00 4.17
3605 7214 0.833287 ACTATGAGCAAGGCCATCGT 59.167 50.000 5.01 1.10 0.00 3.73
3608 7217 1.913951 ATGAGCAAGGCCATCGTCCA 61.914 55.000 5.01 0.00 0.00 4.02
3645 7254 1.303888 CAACACTGCAGCCTCCCAT 60.304 57.895 15.27 0.00 0.00 4.00
3652 7261 3.207669 CAGCCTCCCATCAAGCGC 61.208 66.667 0.00 0.00 0.00 5.92
3744 7549 8.663911 GTGTTCCAAATTCTTTCTGATAGAGAG 58.336 37.037 0.00 0.00 30.18 3.20
3757 7562 3.582647 TGATAGAGAGCCCACACTTGAAA 59.417 43.478 0.00 0.00 0.00 2.69
3769 7574 3.919804 CACACTTGAAAAACATATGGGCG 59.080 43.478 7.80 0.00 0.00 6.13
3777 7582 2.111043 CATATGGGCGGCCGACTT 59.889 61.111 33.64 21.53 0.00 3.01
3810 7615 1.070577 GCATAGCTGACATAAACCGCG 60.071 52.381 0.00 0.00 0.00 6.46
3839 7644 1.021920 GCCTCTTCTCTCCAAACGGC 61.022 60.000 0.00 0.00 0.00 5.68
3846 7651 2.281208 CTCCAAACGGCCGTCCAA 60.281 61.111 34.29 16.41 0.00 3.53
3847 7652 2.592287 TCCAAACGGCCGTCCAAC 60.592 61.111 34.29 0.00 0.00 3.77
3856 7661 2.650196 CCGTCCAACCGGTTCGTA 59.350 61.111 19.24 2.35 43.07 3.43
3857 7662 1.734117 CCGTCCAACCGGTTCGTAC 60.734 63.158 19.24 14.41 43.07 3.67
3859 7664 0.388907 CGTCCAACCGGTTCGTACAT 60.389 55.000 19.24 0.00 0.00 2.29
3860 7665 1.799544 GTCCAACCGGTTCGTACATT 58.200 50.000 19.24 0.00 0.00 2.71
3862 7667 2.925563 GTCCAACCGGTTCGTACATTAG 59.074 50.000 19.24 2.35 0.00 1.73
3863 7668 2.824936 TCCAACCGGTTCGTACATTAGA 59.175 45.455 19.24 0.38 0.00 2.10
3864 7669 3.119388 TCCAACCGGTTCGTACATTAGAG 60.119 47.826 19.24 0.95 0.00 2.43
3866 7671 2.450476 ACCGGTTCGTACATTAGAGGT 58.550 47.619 0.00 0.00 0.00 3.85
3867 7672 2.165030 ACCGGTTCGTACATTAGAGGTG 59.835 50.000 0.00 0.00 0.00 4.00
3868 7673 2.190981 CGGTTCGTACATTAGAGGTGC 58.809 52.381 0.00 0.00 0.00 5.01
3869 7674 2.547826 GGTTCGTACATTAGAGGTGCC 58.452 52.381 0.00 0.00 0.00 5.01
3870 7675 2.093869 GGTTCGTACATTAGAGGTGCCA 60.094 50.000 0.00 0.00 0.00 4.92
3871 7676 3.592059 GTTCGTACATTAGAGGTGCCAA 58.408 45.455 0.00 0.00 0.00 4.52
3872 7677 4.189231 GTTCGTACATTAGAGGTGCCAAT 58.811 43.478 0.00 0.00 0.00 3.16
3911 7718 1.146263 GCCTAGATGACCCAACCCG 59.854 63.158 0.00 0.00 0.00 5.28
3956 7763 3.957288 CCGTGGAAATGGGAGACTT 57.043 52.632 0.00 0.00 0.00 3.01
3971 7778 5.014123 TGGGAGACTTCATGGAATACTTGTT 59.986 40.000 0.00 0.00 0.00 2.83
3987 7794 1.686355 TGTTGTTGGCGGTCATCTTT 58.314 45.000 0.00 0.00 0.00 2.52
4043 7856 2.814336 GCACTTGTTCCAGACTAAAGGG 59.186 50.000 0.00 0.00 0.00 3.95
4049 7862 2.552743 GTTCCAGACTAAAGGGCACAAC 59.447 50.000 0.00 0.00 0.00 3.32
4078 7891 2.754946 TGTAGCTTACCAAGAACCCG 57.245 50.000 0.00 0.00 0.00 5.28
4128 8055 1.954146 GGTCGTGCAAAGCGTCTCA 60.954 57.895 0.00 0.00 0.00 3.27
4144 8071 4.379243 CACACGGCGAGGCTCCTT 62.379 66.667 16.62 0.00 0.00 3.36
4160 8087 0.474184 CCTTCCGGCCAAGGTATCAT 59.526 55.000 12.79 0.00 38.58 2.45
4167 8094 2.303022 CGGCCAAGGTATCATAGACCAT 59.697 50.000 2.24 0.00 39.65 3.55
4261 8188 1.082117 CCATGACGGTAGTTGCGACC 61.082 60.000 0.00 0.00 0.00 4.79
4360 10423 0.968405 ATGGCCAACGCAATCAAAGT 59.032 45.000 10.96 0.00 36.38 2.66
4401 10464 1.742308 TACAAAGTCCCCAAGCCTCT 58.258 50.000 0.00 0.00 0.00 3.69
4510 10580 1.281925 CCATGTTAGGACCAGGGGCT 61.282 60.000 0.00 0.00 30.26 5.19
4519 10589 2.043652 CCAGGGGCTTGATGTGGG 60.044 66.667 0.00 0.00 0.00 4.61
4525 10595 1.494721 GGGGCTTGATGTGGGAGATTA 59.505 52.381 0.00 0.00 0.00 1.75
4584 10654 2.350458 AACCGCCATGATGTTGCCC 61.350 57.895 0.00 0.00 0.00 5.36
4630 10701 2.005451 CACCTTTTCGATGAGAGGCTG 58.995 52.381 0.00 0.00 32.42 4.85
4669 10740 1.749634 ACGGTGCATAGACAGAGGTAC 59.250 52.381 0.00 0.00 0.00 3.34
4695 10766 5.187772 CCGAGATATATCATGGGGAAAGTGA 59.812 44.000 15.08 0.00 0.00 3.41
4717 10788 3.138468 ACCTACTTGGCAGGAAAACTCTT 59.862 43.478 2.65 0.00 40.22 2.85
4743 10814 3.804036 ACCTTGTCAAGTTCGATGTCAA 58.196 40.909 11.61 0.00 0.00 3.18
4757 10829 1.395635 TGTCAATGCATCAGATGGGC 58.604 50.000 12.54 0.00 0.00 5.36
4791 10863 1.760613 TCTCCAAGTTCGTCACAAGGT 59.239 47.619 0.00 0.00 0.00 3.50
4820 10893 1.076841 TCCCAAACCCATGCAGAATGA 59.923 47.619 0.00 0.00 39.69 2.57
4827 10900 2.511218 ACCCATGCAGAATGATGGTAGT 59.489 45.455 0.00 0.00 40.13 2.73
4831 10904 1.066215 TGCAGAATGATGGTAGTGCGT 60.066 47.619 0.00 0.00 39.69 5.24
4843 10916 3.196901 TGGTAGTGCGTTGAATATCCACT 59.803 43.478 0.00 0.00 39.76 4.00
4892 10965 3.647590 TCATCTGCATATAAGGAGGTGCA 59.352 43.478 4.98 1.04 44.50 4.57
4934 11007 1.766059 CCGGATGGAGATGGTCCCA 60.766 63.158 0.00 0.00 46.31 4.37
4935 11008 1.130054 CCGGATGGAGATGGTCCCAT 61.130 60.000 0.00 0.00 46.31 4.00
4953 11026 0.904649 ATTGAGTGGCGATGTCCAGA 59.095 50.000 0.00 0.00 36.67 3.86
5001 11074 1.362224 CAAAGGGAAGTGGGGAGAGA 58.638 55.000 0.00 0.00 0.00 3.10
5035 11108 4.066139 GGCCCCTCCCATGCTTGT 62.066 66.667 0.00 0.00 0.00 3.16
5037 11110 1.610379 GCCCCTCCCATGCTTGTTT 60.610 57.895 0.00 0.00 0.00 2.83
5113 11187 3.446442 AGCATGTCCCAGAATTTCACT 57.554 42.857 0.00 0.00 0.00 3.41
5127 11201 5.546499 AGAATTTCACTAGGAACACCCTACA 59.454 40.000 0.00 0.00 45.48 2.74
5149 11223 3.326006 AGTGGAGAAGATTGAGCAAGTGA 59.674 43.478 0.00 0.00 0.00 3.41
5167 11241 3.074390 AGTGATCCCACCAAACAGAATCA 59.926 43.478 0.00 0.00 44.22 2.57
5243 11317 1.135402 GCTTACGCCCCAAATTGTGAG 60.135 52.381 0.00 0.00 0.00 3.51
5300 11374 1.073125 TGAAAGCACTTTGGATCCGGA 59.927 47.619 6.61 6.61 32.11 5.14
5301 11375 2.290896 TGAAAGCACTTTGGATCCGGAT 60.291 45.455 19.21 19.21 32.11 4.18
5321 11396 1.737735 CGAGCACGTGCATGAAGGA 60.738 57.895 39.21 0.00 45.16 3.36
5322 11397 1.291184 CGAGCACGTGCATGAAGGAA 61.291 55.000 39.21 0.00 45.16 3.36
5331 11406 2.490903 GTGCATGAAGGAAGCAAGATGT 59.509 45.455 0.00 0.00 40.35 3.06
5486 11564 0.107993 TGCTCTACATGCAGGTCAGC 60.108 55.000 22.19 22.19 35.31 4.26
5494 11572 2.719376 TGCAGGTCAGCAAAGAACC 58.281 52.632 0.00 0.00 42.46 3.62
5506 11584 5.045213 TCAGCAAAGAACCCACCATATAAGA 60.045 40.000 0.00 0.00 0.00 2.10
5634 11727 7.337689 CCAATTGAAATCATGTGTCCTTCTCTA 59.662 37.037 7.12 0.00 0.00 2.43
5737 11859 2.230750 CGAAGTTCTTCCTTCTACGGGT 59.769 50.000 0.56 0.00 38.95 5.28
5745 11867 4.960469 TCTTCCTTCTACGGGTATTCACAT 59.040 41.667 0.00 0.00 0.00 3.21
5754 11876 2.936498 CGGGTATTCACATGAAGGTGAC 59.064 50.000 0.00 0.00 46.76 3.67
5771 11893 3.105203 GTGACACAAAATCACGTGTTGG 58.895 45.455 16.51 3.45 46.06 3.77
5772 11894 2.116366 GACACAAAATCACGTGTTGGC 58.884 47.619 16.51 3.02 46.06 4.52
5773 11895 1.119635 CACAAAATCACGTGTTGGCG 58.880 50.000 16.51 5.52 37.94 5.69
5774 11896 0.030101 ACAAAATCACGTGTTGGCGG 59.970 50.000 16.51 5.00 35.98 6.13
5775 11897 1.007849 AAAATCACGTGTTGGCGGC 60.008 52.632 16.51 0.00 35.98 6.53
5776 11898 1.729470 AAAATCACGTGTTGGCGGCA 61.729 50.000 16.51 7.97 35.98 5.69
5777 11899 2.400896 AAATCACGTGTTGGCGGCAC 62.401 55.000 12.92 7.95 35.98 5.01
5782 11904 4.947147 GTGTTGGCGGCACCCTCA 62.947 66.667 12.92 6.19 37.83 3.86
5783 11905 4.641645 TGTTGGCGGCACCCTCAG 62.642 66.667 12.92 0.00 37.83 3.35
5842 11985 3.800863 GCGAGCTCGAGGACGACA 61.801 66.667 38.74 0.00 43.81 4.35
5878 12035 1.689575 CCTCAAATCTCCCTCCTCCGA 60.690 57.143 0.00 0.00 0.00 4.55
5920 12085 2.028876 TCTGTCGAGTTCAACACCTGA 58.971 47.619 0.00 0.00 0.00 3.86
6064 12243 2.674958 CTGGAAGGGCCTTTGCAAT 58.325 52.632 21.95 0.00 40.13 3.56
6171 12350 5.565455 TTCTTGATTTTCCCAAGCCATTT 57.435 34.783 0.00 0.00 40.45 2.32
6213 12396 3.269310 CAGCGCGTGTAAAATCGTAATC 58.731 45.455 8.43 0.00 0.00 1.75
6216 12399 3.712572 GCGCGTGTAAAATCGTAATCAAG 59.287 43.478 8.43 0.00 0.00 3.02
6361 12617 7.703328 ACACGAATCTGTACAATTCAGTTTTT 58.297 30.769 20.69 10.12 33.60 1.94
6390 12646 7.201857 CCCTTCTTTGTCTGATGATATTTTCCC 60.202 40.741 0.00 0.00 0.00 3.97
6456 12712 4.922206 AGTGCAGGAATCAAGGTATTTCA 58.078 39.130 0.00 0.00 0.00 2.69
6518 12774 7.844009 ACCTACAAACTTCGTCTAATATCCAA 58.156 34.615 0.00 0.00 0.00 3.53
6520 12776 9.326413 CCTACAAACTTCGTCTAATATCCAATT 57.674 33.333 0.00 0.00 0.00 2.32
6762 13026 4.469945 CAGGTGGAGGAAGACATAGGTTTA 59.530 45.833 0.00 0.00 0.00 2.01
6812 13076 4.321230 GGATCAACAAGAAACCCACATGAC 60.321 45.833 0.00 0.00 0.00 3.06
6825 13089 1.487976 CACATGACCCCTAGCATCTGT 59.512 52.381 0.00 0.00 0.00 3.41
6870 13134 6.040729 ACATTGATCAACAGTCATTCCAAACA 59.959 34.615 11.07 0.00 0.00 2.83
6874 13138 3.631686 TCAACAGTCATTCCAAACACAGG 59.368 43.478 0.00 0.00 0.00 4.00
6903 13167 1.529010 CACTGGTCAGCCAAAGCCA 60.529 57.895 0.00 0.00 45.51 4.75
6920 13184 1.269257 GCCAGAGCCAAACAAGTTCAC 60.269 52.381 0.00 0.00 0.00 3.18
6921 13185 2.023673 CCAGAGCCAAACAAGTTCACA 58.976 47.619 0.00 0.00 0.00 3.58
6954 13218 4.649088 TGACGATGAAATGGAGTACGAT 57.351 40.909 0.00 0.00 0.00 3.73
6958 13222 4.142249 ACGATGAAATGGAGTACGATGACA 60.142 41.667 0.00 0.00 0.00 3.58
6970 13237 1.467342 ACGATGACAACGAGATCGACA 59.533 47.619 12.41 4.31 41.18 4.35
6975 13242 0.594602 ACAACGAGATCGACACGGAA 59.405 50.000 9.58 0.00 43.02 4.30
6984 13251 3.109547 GACACGGAATGCGCGTCA 61.110 61.111 10.27 6.86 0.00 4.35
6993 13260 3.583276 ATGCGCGTCAGGTTCGGAA 62.583 57.895 8.43 0.00 0.00 4.30
7062 13329 1.063027 AGCAATGATGATCACGCAACG 59.937 47.619 17.68 0.00 32.35 4.10
7070 13337 2.006169 TGATCACGCAACGCATAATGT 58.994 42.857 0.00 0.00 0.00 2.71
7072 13339 3.245048 TGATCACGCAACGCATAATGTAG 59.755 43.478 0.00 0.00 0.00 2.74
7073 13340 1.930503 TCACGCAACGCATAATGTAGG 59.069 47.619 0.00 0.00 0.00 3.18
7074 13341 1.003972 CACGCAACGCATAATGTAGGG 60.004 52.381 0.00 0.00 0.00 3.53
7161 13431 2.104622 TGGCGATGAGATCCAAATGCTA 59.895 45.455 0.00 0.00 0.00 3.49
7180 13450 3.431055 TGGTTTGCCAGAACAGCG 58.569 55.556 0.00 0.00 40.46 5.18
7197 13470 4.269183 ACAGCGGTGATCATTCCAATTTA 58.731 39.130 23.44 0.00 0.00 1.40
7270 13543 1.825474 ACCCTCAGTCGTCAGGTATTG 59.175 52.381 0.00 0.00 0.00 1.90
7284 13560 5.357878 GTCAGGTATTGCCATTTCTCATTCA 59.642 40.000 0.00 0.00 40.61 2.57
7425 13704 0.532862 CAACAACGCCCTGAGACAGT 60.533 55.000 0.00 0.00 0.00 3.55
7427 13706 1.367471 CAACGCCCTGAGACAGTCA 59.633 57.895 2.66 0.00 0.00 3.41
7435 13714 2.276116 TGAGACAGTCAGACGGGCC 61.276 63.158 2.41 0.00 0.00 5.80
7509 13788 3.274586 CTGGCATCCATGGACGCG 61.275 66.667 25.29 14.14 33.77 6.01
7598 13877 1.450312 CAAGCCACCGGGTGATCTC 60.450 63.158 28.36 13.46 35.23 2.75
7706 13991 2.126071 CGGTTCATCGTCCTGCGT 60.126 61.111 0.00 0.00 42.13 5.24
7768 14053 8.181904 TCTTCAGCCAAAAAGATTCAGTAATT 57.818 30.769 0.00 0.00 0.00 1.40
7886 14267 0.036010 AACGCATCCAGGACCTTGAG 60.036 55.000 1.26 0.00 0.00 3.02
7897 14278 0.036858 GACCTTGAGTCCTCTGTGGC 60.037 60.000 0.00 0.00 39.84 5.01
7902 14283 3.322318 GAGTCCTCTGTGGCCAGGC 62.322 68.421 5.11 1.26 39.31 4.85
7903 14284 3.640407 GTCCTCTGTGGCCAGGCA 61.640 66.667 15.19 0.00 39.31 4.75
7904 14285 3.324930 TCCTCTGTGGCCAGGCAG 61.325 66.667 15.19 15.62 39.31 4.85
7906 14287 4.340246 CTCTGTGGCCAGGCAGCA 62.340 66.667 15.19 10.37 39.31 4.41
7907 14288 4.340246 TCTGTGGCCAGGCAGCAG 62.340 66.667 22.02 22.02 39.31 4.24
7910 14291 4.982701 GTGGCCAGGCAGCAGGTT 62.983 66.667 15.19 0.00 0.00 3.50
7911 14292 4.666253 TGGCCAGGCAGCAGGTTC 62.666 66.667 15.19 0.00 0.00 3.62
7912 14293 4.666253 GGCCAGGCAGCAGGTTCA 62.666 66.667 15.19 0.00 0.00 3.18
7913 14294 3.368571 GCCAGGCAGCAGGTTCAC 61.369 66.667 6.55 0.00 0.00 3.18
7914 14295 3.052082 CCAGGCAGCAGGTTCACG 61.052 66.667 0.00 0.00 0.00 4.35
7915 14296 3.052082 CAGGCAGCAGGTTCACGG 61.052 66.667 0.00 0.00 0.00 4.94
7916 14297 3.560251 AGGCAGCAGGTTCACGGT 61.560 61.111 0.00 0.00 0.00 4.83
7917 14298 3.357079 GGCAGCAGGTTCACGGTG 61.357 66.667 0.56 0.56 0.00 4.94
7918 14299 2.280797 GCAGCAGGTTCACGGTGA 60.281 61.111 6.76 6.76 32.37 4.02
7919 14300 2.607892 GCAGCAGGTTCACGGTGAC 61.608 63.158 10.97 6.28 32.37 3.67
7920 14301 1.961277 CAGCAGGTTCACGGTGACC 60.961 63.158 10.97 14.72 32.37 4.02
7921 14302 2.140792 AGCAGGTTCACGGTGACCT 61.141 57.895 19.83 19.83 31.26 3.85
7922 14303 1.961277 GCAGGTTCACGGTGACCTG 60.961 63.158 32.61 32.61 42.87 4.00
7923 14304 1.961277 CAGGTTCACGGTGACCTGC 60.961 63.158 29.48 15.25 38.15 4.85
7924 14305 2.140792 AGGTTCACGGTGACCTGCT 61.141 57.895 22.84 5.38 30.44 4.24
7925 14306 1.961277 GGTTCACGGTGACCTGCTG 60.961 63.158 10.97 0.00 0.00 4.41
7926 14307 1.961277 GTTCACGGTGACCTGCTGG 60.961 63.158 10.97 8.29 39.83 4.85
7935 14316 4.290622 ACCTGCTGGTGCCCAAGG 62.291 66.667 15.36 9.31 46.51 3.61
7942 14323 4.717313 GGTGCCCAAGGGGTCGTC 62.717 72.222 7.36 0.00 46.51 4.20
7948 14329 1.608717 CCCAAGGGGTCGTCAGAGAG 61.609 65.000 0.00 0.00 38.25 3.20
7960 14344 3.456365 AGAGAGGCGTGCGCTGAT 61.456 61.111 16.21 3.09 41.60 2.90
8150 14546 4.083862 GTCACCTCCGTCCAGGCC 62.084 72.222 0.00 0.00 40.77 5.19
8248 14676 3.435671 ACGTTACTGTTAATGCTGGCTTC 59.564 43.478 0.00 0.00 0.00 3.86
8456 14890 9.225201 GAAAAATTTCATCAGGCTTTGTTTTTC 57.775 29.630 12.99 12.99 36.51 2.29
8462 14896 7.306205 TCATCAGGCTTTGTTTTTCTTTTTG 57.694 32.000 0.00 0.00 0.00 2.44
8464 14898 8.037758 TCATCAGGCTTTGTTTTTCTTTTTGTA 58.962 29.630 0.00 0.00 0.00 2.41
8465 14899 8.663911 CATCAGGCTTTGTTTTTCTTTTTGTAA 58.336 29.630 0.00 0.00 0.00 2.41
8673 15329 5.240623 GTGATTAACACCAAGGTCATGAACA 59.759 40.000 14.46 0.00 43.05 3.18
8675 15331 2.276732 ACACCAAGGTCATGAACAGG 57.723 50.000 14.46 16.43 0.00 4.00
8718 15374 0.107459 GAAGCTCCTACAGGGCCAAG 60.107 60.000 6.18 0.00 33.61 3.61
8719 15375 1.566298 AAGCTCCTACAGGGCCAAGG 61.566 60.000 6.18 9.92 33.61 3.61
8804 15460 9.822185 GCACAAAATCAGAGGGAAAATAATAAT 57.178 29.630 0.00 0.00 0.00 1.28
8854 15514 8.207545 TGCAAGTACAAAAATACCCTTCAAAAT 58.792 29.630 0.00 0.00 0.00 1.82
8921 15591 6.396829 AAGATAAGCAAACAAGCAAGAACT 57.603 33.333 0.00 0.00 36.85 3.01
9189 15879 3.131046 GCCATCCAAACCTGAACCAATAG 59.869 47.826 0.00 0.00 0.00 1.73
9343 16038 5.760253 AGAAGAAAACATCGCAGAGAAAGAA 59.240 36.000 0.00 0.00 43.63 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.179119 GAGTAAAAGGCCGAGCGCTA 60.179 55.000 11.50 0.00 37.74 4.26
113 114 1.448013 GAGTAAAAGGCCGAGCGCT 60.448 57.895 11.27 11.27 37.74 5.92
114 115 2.461945 GGAGTAAAAGGCCGAGCGC 61.462 63.158 0.00 0.00 0.00 5.92
115 116 0.391263 AAGGAGTAAAAGGCCGAGCG 60.391 55.000 0.00 0.00 0.00 5.03
116 117 1.738350 GAAAGGAGTAAAAGGCCGAGC 59.262 52.381 0.00 0.00 0.00 5.03
157 158 2.128507 GTGGGCTAGCTAGGTCGCT 61.129 63.158 22.10 0.00 43.83 4.93
206 213 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
210 217 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
213 220 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
222 229 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
225 232 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
226 233 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
227 234 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
228 235 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
229 236 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
230 237 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
231 238 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
232 239 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
233 240 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
234 241 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
235 242 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
236 243 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
237 244 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
238 245 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
239 246 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
240 247 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
241 248 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
242 249 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
243 250 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
244 251 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
245 252 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
246 253 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
247 254 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
248 255 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
249 256 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
250 257 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
251 258 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
252 259 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
253 260 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
254 261 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
255 262 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
256 263 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
257 264 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
258 265 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
259 266 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
260 267 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
261 268 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
262 269 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
282 289 3.640407 AAAGGGGAGCAGCGCAGA 61.640 61.111 11.47 0.00 0.00 4.26
286 293 2.819984 TAAGGCAAAGGGGAGCAGCG 62.820 60.000 0.00 0.00 0.00 5.18
293 300 3.019564 CTCACAGAATAAGGCAAAGGGG 58.980 50.000 0.00 0.00 0.00 4.79
338 345 4.556233 TCCACAAAATAGACACTCTCACG 58.444 43.478 0.00 0.00 0.00 4.35
999 3919 1.760192 ACATTGCAAGGATGGAGCTC 58.240 50.000 19.41 4.71 0.00 4.09
1011 3931 2.738314 CGAGTGAGACATGAACATTGCA 59.262 45.455 0.00 0.00 0.00 4.08
1052 3993 4.214758 CACTTGTGAGCATGAACAGATCAA 59.785 41.667 0.00 0.00 42.54 2.57
1053 3994 3.749609 CACTTGTGAGCATGAACAGATCA 59.250 43.478 0.00 0.00 43.67 2.92
1054 3995 3.750130 ACACTTGTGAGCATGAACAGATC 59.250 43.478 7.83 0.00 0.00 2.75
1055 3996 3.748083 ACACTTGTGAGCATGAACAGAT 58.252 40.909 7.83 0.00 0.00 2.90
1056 3997 3.198409 ACACTTGTGAGCATGAACAGA 57.802 42.857 7.83 0.00 0.00 3.41
1057 3998 3.562973 AGAACACTTGTGAGCATGAACAG 59.437 43.478 7.83 0.00 0.00 3.16
1058 3999 3.544684 AGAACACTTGTGAGCATGAACA 58.455 40.909 7.83 0.00 0.00 3.18
1059 4000 4.558538 AAGAACACTTGTGAGCATGAAC 57.441 40.909 7.83 0.00 0.00 3.18
1060 4001 6.691754 TTAAAGAACACTTGTGAGCATGAA 57.308 33.333 7.83 0.00 0.00 2.57
1061 4002 6.691754 TTTAAAGAACACTTGTGAGCATGA 57.308 33.333 7.83 0.00 0.00 3.07
1062 4003 7.935338 AATTTAAAGAACACTTGTGAGCATG 57.065 32.000 7.83 0.00 0.00 4.06
1063 4004 8.416329 AGAAATTTAAAGAACACTTGTGAGCAT 58.584 29.630 7.83 0.00 0.00 3.79
1064 4005 7.771183 AGAAATTTAAAGAACACTTGTGAGCA 58.229 30.769 7.83 0.00 0.00 4.26
1065 4006 8.634475 AAGAAATTTAAAGAACACTTGTGAGC 57.366 30.769 7.83 0.00 0.00 4.26
1069 4010 9.435688 AGCAAAAGAAATTTAAAGAACACTTGT 57.564 25.926 0.00 0.00 0.00 3.16
1070 4011 9.906111 GAGCAAAAGAAATTTAAAGAACACTTG 57.094 29.630 0.00 0.00 0.00 3.16
1071 4012 8.807581 CGAGCAAAAGAAATTTAAAGAACACTT 58.192 29.630 0.00 0.00 0.00 3.16
1072 4013 7.973944 ACGAGCAAAAGAAATTTAAAGAACACT 59.026 29.630 0.00 0.00 0.00 3.55
1073 4014 8.115491 ACGAGCAAAAGAAATTTAAAGAACAC 57.885 30.769 0.00 0.00 0.00 3.32
1074 4015 7.971168 TGACGAGCAAAAGAAATTTAAAGAACA 59.029 29.630 0.00 0.00 0.00 3.18
1075 4016 8.259872 GTGACGAGCAAAAGAAATTTAAAGAAC 58.740 33.333 0.00 0.00 0.00 3.01
1078 4019 6.129457 CCGTGACGAGCAAAAGAAATTTAAAG 60.129 38.462 6.54 0.00 0.00 1.85
1308 4257 2.266055 GACGTCCCTGAAGCCTGG 59.734 66.667 3.51 0.00 0.00 4.45
1482 4444 6.842163 AGTAAGAAAATGCGGTAACAAGATG 58.158 36.000 0.00 0.00 0.00 2.90
1496 4875 5.722021 ATGTTTTGCCGGAGTAAGAAAAT 57.278 34.783 5.05 0.00 0.00 1.82
1647 5068 8.073355 AGATACAAACAACTTTCTAACACGAG 57.927 34.615 0.00 0.00 0.00 4.18
1706 5138 9.391006 TGACACTATGATAATGTAAAAAGACCC 57.609 33.333 0.00 0.00 0.00 4.46
1739 5172 0.178990 GAGCTCCAAACACCCCACTT 60.179 55.000 0.87 0.00 0.00 3.16
1747 5180 1.376466 GGAGGCTGAGCTCCAAACA 59.624 57.895 12.15 0.00 39.45 2.83
1896 5345 2.166821 TTTTGCATGGCTCGCATTTT 57.833 40.000 2.31 0.00 39.58 1.82
2061 5541 9.834628 ATGATCAAAATTCAAATTTGCATGTTC 57.165 25.926 13.54 11.10 38.53 3.18
2120 5600 6.824305 TTTCTTTTGACAAAAATGCCCAAA 57.176 29.167 14.04 4.77 34.81 3.28
2149 5629 9.982651 ACAACGCTACTTCTGTATCATAATATT 57.017 29.630 0.00 0.00 0.00 1.28
2165 5645 7.754027 CAGTAGAACTACATAAACAACGCTACT 59.246 37.037 13.34 0.00 38.48 2.57
2170 5650 6.033196 CGACCAGTAGAACTACATAAACAACG 59.967 42.308 13.34 5.42 38.48 4.10
2261 5744 3.197116 TCGGGATTCCAAAGGAGAGTAAC 59.803 47.826 4.80 0.00 31.21 2.50
2291 5774 3.069443 GGAGAATGTTGGCCAACTTTTCA 59.931 43.478 37.81 27.16 41.67 2.69
2292 5775 3.653344 GGAGAATGTTGGCCAACTTTTC 58.347 45.455 40.40 36.79 41.67 2.29
2332 5815 1.404035 GGAGTTGCGTTTGTTCTTGGT 59.596 47.619 0.00 0.00 0.00 3.67
2345 5828 5.323371 TGGCTAAATTGTTATGGAGTTGC 57.677 39.130 0.00 0.00 0.00 4.17
2372 5855 3.887716 GAGCACATCCCATTTAGATGCTT 59.112 43.478 0.00 0.00 44.08 3.91
2373 5856 3.117776 TGAGCACATCCCATTTAGATGCT 60.118 43.478 0.00 0.00 44.08 3.79
2374 5857 3.216800 TGAGCACATCCCATTTAGATGC 58.783 45.455 0.79 0.00 44.08 3.91
2375 5858 4.641541 TGTTGAGCACATCCCATTTAGATG 59.358 41.667 0.00 0.00 45.43 2.90
2383 5866 2.040145 TGAGAATGTTGAGCACATCCCA 59.960 45.455 0.00 0.00 46.23 4.37
2384 5867 2.715046 TGAGAATGTTGAGCACATCCC 58.285 47.619 0.00 0.00 46.23 3.85
2427 5910 0.821301 TCACGGTCAGGCAAATGCAA 60.821 50.000 7.80 0.00 44.36 4.08
2607 6115 1.202879 TCCCACTCCATTGTGACCAAC 60.203 52.381 0.00 0.00 40.12 3.77
2633 6141 0.179081 GATGACGGACCCTTAGTGCC 60.179 60.000 0.00 0.00 32.03 5.01
2637 6145 2.027561 TGGTTTGATGACGGACCCTTAG 60.028 50.000 0.00 0.00 0.00 2.18
2642 6150 3.081804 AGAAATGGTTTGATGACGGACC 58.918 45.455 0.00 0.00 0.00 4.46
2651 6159 5.555017 CTCTCTCTGGAAGAAATGGTTTGA 58.445 41.667 0.00 0.00 46.34 2.69
2695 6203 6.749118 GCATCTCAAAACTCCATGATAACAAC 59.251 38.462 0.00 0.00 0.00 3.32
2713 6248 1.671850 GGACCGTTTTCTCGCATCTCA 60.672 52.381 0.00 0.00 0.00 3.27
2766 6301 1.425448 GTTAGAGCATGGGCCCCTTAT 59.575 52.381 22.27 2.46 42.56 1.73
2767 6302 0.843984 GTTAGAGCATGGGCCCCTTA 59.156 55.000 22.27 0.00 42.56 2.69
2769 6304 2.386935 GGTTAGAGCATGGGCCCCT 61.387 63.158 22.27 9.51 42.56 4.79
2770 6305 2.195956 GGTTAGAGCATGGGCCCC 59.804 66.667 22.27 3.22 42.56 5.80
2784 6320 1.279558 GTTTTGGTTGGGTTGGTGGTT 59.720 47.619 0.00 0.00 0.00 3.67
2793 6329 1.490574 TCCACTTGGTTTTGGTTGGG 58.509 50.000 0.00 0.00 34.19 4.12
2881 6422 0.032515 TCCACTCCGAGGAATGGCTA 60.033 55.000 14.30 0.00 40.90 3.93
2986 6544 9.334693 GAACAAGTGTCTTATGATGAAATGTTC 57.665 33.333 0.00 0.00 0.00 3.18
2988 6546 8.627208 AGAACAAGTGTCTTATGATGAAATGT 57.373 30.769 0.00 0.00 0.00 2.71
3117 6685 0.790814 GCTTTGTCGGAAGGAACTCG 59.209 55.000 0.00 0.00 38.49 4.18
3195 6775 3.823873 TGGCATGGTAAATTCAGTTCGTT 59.176 39.130 0.00 0.00 0.00 3.85
3201 6781 4.097892 GGTACCTTGGCATGGTAAATTCAG 59.902 45.833 27.93 1.41 41.16 3.02
3213 6793 1.374947 GCAGAGTGGTACCTTGGCA 59.625 57.895 14.36 0.00 0.00 4.92
3214 6794 0.035056 ATGCAGAGTGGTACCTTGGC 60.035 55.000 14.36 10.15 0.00 4.52
3222 6802 3.023119 TGTGAAAAACATGCAGAGTGGT 58.977 40.909 0.00 0.00 32.36 4.16
3238 6818 2.160205 TGGACCGTTGTTTTGTGTGAA 58.840 42.857 0.00 0.00 0.00 3.18
3239 6819 1.822506 TGGACCGTTGTTTTGTGTGA 58.177 45.000 0.00 0.00 0.00 3.58
3249 6829 8.925161 ATAATATTTGACAAATTGGACCGTTG 57.075 30.769 18.15 1.82 32.38 4.10
3250 6830 9.936759 AAATAATATTTGACAAATTGGACCGTT 57.063 25.926 18.15 3.25 32.38 4.44
3251 6831 9.364989 CAAATAATATTTGACAAATTGGACCGT 57.635 29.630 18.15 0.00 32.38 4.83
3252 6832 9.579768 TCAAATAATATTTGACAAATTGGACCG 57.420 29.630 20.77 3.75 33.90 4.79
3412 7019 7.504238 TGAGAGTAGGCTTTTGTTTTCCATTTA 59.496 33.333 0.00 0.00 0.00 1.40
3476 7084 8.332804 ATCAAGGATGAGGTCAAGGATTGGAG 62.333 46.154 0.00 0.00 42.47 3.86
3523 7131 8.282256 AGGGTTTTCAGAAATATGCCTACTATT 58.718 33.333 0.00 0.00 0.00 1.73
3533 7141 7.910584 AGAAATGCAAGGGTTTTCAGAAATAT 58.089 30.769 11.26 0.00 32.94 1.28
3569 7177 4.532126 TCATAGTGTTGGTCATCAGGAGTT 59.468 41.667 0.00 0.00 0.00 3.01
3605 7214 3.087781 CGAGGAGAGCATATGAGATGGA 58.912 50.000 6.97 0.00 0.00 3.41
3608 7217 2.523245 TGCGAGGAGAGCATATGAGAT 58.477 47.619 6.97 0.00 40.01 2.75
3645 7254 2.126463 CTCTCGGTTCGCGCTTGA 60.126 61.111 5.56 0.00 0.00 3.02
3652 7261 3.343788 AAGCGCTCCTCTCGGTTCG 62.344 63.158 12.06 0.00 42.95 3.95
3744 7549 4.244862 CCATATGTTTTTCAAGTGTGGGC 58.755 43.478 1.24 0.00 0.00 5.36
3757 7562 1.822186 GTCGGCCGCCCATATGTTT 60.822 57.895 23.51 0.00 0.00 2.83
3810 7615 0.962855 GAGAAGAGGCTGGCCAAACC 60.963 60.000 15.39 15.39 38.92 3.27
3846 7651 2.165030 CACCTCTAATGTACGAACCGGT 59.835 50.000 0.00 0.00 0.00 5.28
3847 7652 2.805845 CACCTCTAATGTACGAACCGG 58.194 52.381 0.00 0.00 0.00 5.28
3849 7654 2.093869 TGGCACCTCTAATGTACGAACC 60.094 50.000 0.00 0.00 0.00 3.62
3852 7657 5.601583 TTATTGGCACCTCTAATGTACGA 57.398 39.130 0.00 0.00 0.00 3.43
3853 7658 6.671614 TTTTATTGGCACCTCTAATGTACG 57.328 37.500 0.00 0.00 0.00 3.67
3935 7742 1.540367 TCTCCCATTTCCACGGGGT 60.540 57.895 2.12 0.00 43.29 4.95
3951 7758 6.207417 CCAACAACAAGTATTCCATGAAGTCT 59.793 38.462 0.00 0.00 0.00 3.24
3955 7762 4.320861 CGCCAACAACAAGTATTCCATGAA 60.321 41.667 0.00 0.00 0.00 2.57
3956 7763 3.190327 CGCCAACAACAAGTATTCCATGA 59.810 43.478 0.00 0.00 0.00 3.07
3971 7778 1.974265 TTGAAAGATGACCGCCAACA 58.026 45.000 0.00 0.00 0.00 3.33
3987 7794 5.356470 TGACATTGCCGATGATATTGTTTGA 59.644 36.000 0.00 0.00 39.15 2.69
4062 7875 1.375523 CGCGGGTTCTTGGTAAGCT 60.376 57.895 0.00 0.00 0.00 3.74
4064 7877 1.359459 GCTCGCGGGTTCTTGGTAAG 61.359 60.000 8.30 0.00 0.00 2.34
4078 7891 0.659957 GGAAGATTGACATGGCTCGC 59.340 55.000 0.00 0.00 0.00 5.03
4128 8055 4.070552 GAAGGAGCCTCGCCGTGT 62.071 66.667 0.00 0.00 0.00 4.49
4144 8071 1.968493 GTCTATGATACCTTGGCCGGA 59.032 52.381 5.05 0.00 0.00 5.14
4147 8074 3.679389 CATGGTCTATGATACCTTGGCC 58.321 50.000 0.00 0.00 39.21 5.36
4151 8078 3.073062 GTGCCCATGGTCTATGATACCTT 59.927 47.826 11.73 0.00 39.21 3.50
4160 8087 4.999469 ATGATATTGTGCCCATGGTCTA 57.001 40.909 11.73 0.00 0.00 2.59
4167 8094 2.749600 AGCCAAATGATATTGTGCCCA 58.250 42.857 0.00 0.00 31.17 5.36
4261 8188 1.473278 GTGGACGTGGACCTCTTCTAG 59.527 57.143 0.00 0.00 0.00 2.43
4325 10388 1.756538 GCCATGGTACAAATGGAAGGG 59.243 52.381 24.03 4.50 46.44 3.95
4383 10446 1.742308 TAGAGGCTTGGGGACTTTGT 58.258 50.000 0.00 0.00 30.21 2.83
4388 10451 2.618302 GGAAGTTTAGAGGCTTGGGGAC 60.618 54.545 0.00 0.00 0.00 4.46
4401 10464 6.569127 TGGTCTATATGCCAAGGAAGTTTA 57.431 37.500 0.00 0.00 0.00 2.01
4510 10580 2.846206 AGCAGGTAATCTCCCACATCAA 59.154 45.455 0.00 0.00 0.00 2.57
4519 10589 0.105039 CCCACGGAGCAGGTAATCTC 59.895 60.000 0.00 0.00 0.00 2.75
4590 10660 2.187163 GGGTAAGCTCGTCCCTGC 59.813 66.667 11.94 0.00 38.29 4.85
4630 10701 0.179084 TCGGTGGAGGATCGATTTGC 60.179 55.000 0.00 0.00 30.06 3.68
4691 10762 1.729586 TTCCTGCCAAGTAGGTCACT 58.270 50.000 0.00 0.00 40.61 3.41
4695 10766 2.711547 AGAGTTTTCCTGCCAAGTAGGT 59.288 45.455 0.00 0.00 40.61 3.08
4717 10788 2.036387 TCGAACTTGACAAGGTCCTCA 58.964 47.619 24.24 8.55 42.34 3.86
4743 10814 2.596631 GGCGCCCATCTGATGCAT 60.597 61.111 18.11 0.00 0.00 3.96
4757 10829 0.674581 TGGAGAAGATGCTTGTGGCG 60.675 55.000 0.00 0.00 45.43 5.69
4791 10863 0.631753 TGGGTTTGGGAGGTCACAAA 59.368 50.000 3.18 3.18 45.99 2.83
4820 10893 4.127171 GTGGATATTCAACGCACTACCAT 58.873 43.478 0.00 0.00 0.00 3.55
4827 10900 2.951457 TCGAGTGGATATTCAACGCA 57.049 45.000 6.89 0.00 0.00 5.24
4831 10904 4.816385 GCTCCAATTCGAGTGGATATTCAA 59.184 41.667 17.51 0.00 44.19 2.69
4843 10916 1.265635 CGTTTTGTGGCTCCAATTCGA 59.734 47.619 0.00 0.00 0.00 3.71
4852 10925 1.433837 GACACGACCGTTTTGTGGCT 61.434 55.000 6.60 0.00 43.86 4.75
4892 10965 1.682344 GGGAGGGCCGCTTTCATTT 60.682 57.895 7.35 0.00 33.83 2.32
4934 11007 0.904649 TCTGGACATCGCCACTCAAT 59.095 50.000 0.00 0.00 33.52 2.57
4935 11008 0.684535 TTCTGGACATCGCCACTCAA 59.315 50.000 0.00 0.00 33.52 3.02
4953 11026 1.048601 TCGACCTGCTTCAGAACCTT 58.951 50.000 0.00 0.00 32.44 3.50
5001 11074 1.604378 CCTTTCGCATGGAGACCCT 59.396 57.895 0.00 0.00 0.00 4.34
5035 11108 3.751518 GTTGAGTTCTTGGGGAGCTAAA 58.248 45.455 0.00 0.00 35.64 1.85
5037 11110 1.275291 CGTTGAGTTCTTGGGGAGCTA 59.725 52.381 0.00 0.00 35.64 3.32
5113 11187 2.380932 TCTCCACTGTAGGGTGTTCCTA 59.619 50.000 0.00 0.00 45.98 2.94
5127 11201 3.326006 TCACTTGCTCAATCTTCTCCACT 59.674 43.478 0.00 0.00 0.00 4.00
5149 11223 3.834231 CCTTTGATTCTGTTTGGTGGGAT 59.166 43.478 0.00 0.00 0.00 3.85
5167 11241 5.632034 AGTTAGACACCAAGAAGACCTTT 57.368 39.130 0.00 0.00 31.42 3.11
5243 11317 7.390027 AGTATCCATGACAACTTCCTATATGC 58.610 38.462 0.00 0.00 0.00 3.14
5278 11352 2.159338 CCGGATCCAAAGTGCTTTCATG 60.159 50.000 13.41 0.00 0.00 3.07
5321 11396 1.005097 TGATGGCCTCACATCTTGCTT 59.995 47.619 3.32 0.00 45.78 3.91
5322 11397 0.622136 TGATGGCCTCACATCTTGCT 59.378 50.000 3.32 0.00 45.78 3.91
5331 11406 0.332293 TGGCAAAGATGATGGCCTCA 59.668 50.000 3.32 5.76 46.53 3.86
5368 11444 7.292713 TCGGCCTATTAGTATAATTGACACA 57.707 36.000 0.00 0.00 0.00 3.72
5374 11450 9.841295 TGACTTTTTCGGCCTATTAGTATAATT 57.159 29.630 0.00 0.00 0.00 1.40
5397 11473 2.223502 TGGCGTCGAGTGAATCTATGAC 60.224 50.000 0.00 0.00 0.00 3.06
5436 11513 1.226660 CAAATCGGCCAACATCGCC 60.227 57.895 2.24 0.00 43.38 5.54
5451 11528 0.550914 AGCACTTCCAGTGGGTCAAA 59.449 50.000 9.92 0.00 46.01 2.69
5486 11564 4.580580 GGCTCTTATATGGTGGGTTCTTTG 59.419 45.833 0.00 0.00 0.00 2.77
5487 11565 4.478686 AGGCTCTTATATGGTGGGTTCTTT 59.521 41.667 0.00 0.00 0.00 2.52
5494 11572 3.392616 AGGACAAGGCTCTTATATGGTGG 59.607 47.826 0.00 0.00 0.00 4.61
5538 11631 3.808834 TCACAGAGAAGGAGGTCACTA 57.191 47.619 0.00 0.00 0.00 2.74
5634 11727 2.509931 ATCCATGCTGCACAAGGGCT 62.510 55.000 3.57 0.00 37.74 5.19
5737 11859 6.951062 TTTTGTGTCACCTTCATGTGAATA 57.049 33.333 0.00 0.00 46.17 1.75
5745 11867 3.064682 CACGTGATTTTGTGTCACCTTCA 59.935 43.478 10.90 0.00 42.25 3.02
5754 11876 1.119635 CGCCAACACGTGATTTTGTG 58.880 50.000 25.01 11.16 41.81 3.33
5771 11893 1.972660 ATCTAACCTGAGGGTGCCGC 61.973 60.000 0.00 0.00 46.67 6.53
5772 11894 1.410004 TATCTAACCTGAGGGTGCCG 58.590 55.000 0.00 0.00 46.67 5.69
5773 11895 3.244596 GGATTATCTAACCTGAGGGTGCC 60.245 52.174 0.00 0.00 46.67 5.01
5774 11896 3.555168 CGGATTATCTAACCTGAGGGTGC 60.555 52.174 0.00 0.00 46.67 5.01
5775 11897 3.555168 GCGGATTATCTAACCTGAGGGTG 60.555 52.174 0.00 0.00 46.67 4.61
5777 11899 2.352814 CGCGGATTATCTAACCTGAGGG 60.353 54.545 2.38 0.00 38.88 4.30
5778 11900 2.296471 ACGCGGATTATCTAACCTGAGG 59.704 50.000 12.47 0.00 0.00 3.86
5779 11901 3.004419 TGACGCGGATTATCTAACCTGAG 59.996 47.826 12.47 0.00 0.00 3.35
5780 11902 2.953648 TGACGCGGATTATCTAACCTGA 59.046 45.455 12.47 0.00 0.00 3.86
5781 11903 3.050619 GTGACGCGGATTATCTAACCTG 58.949 50.000 12.47 0.00 0.00 4.00
5782 11904 2.035576 GGTGACGCGGATTATCTAACCT 59.964 50.000 12.47 0.00 0.00 3.50
5783 11905 2.401351 GGTGACGCGGATTATCTAACC 58.599 52.381 12.47 0.00 0.00 2.85
5784 11906 2.035576 AGGGTGACGCGGATTATCTAAC 59.964 50.000 12.47 0.00 0.00 2.34
5785 11907 2.295349 GAGGGTGACGCGGATTATCTAA 59.705 50.000 12.47 0.00 0.00 2.10
5786 11908 1.884579 GAGGGTGACGCGGATTATCTA 59.115 52.381 12.47 0.00 0.00 1.98
5787 11909 0.674534 GAGGGTGACGCGGATTATCT 59.325 55.000 12.47 0.00 0.00 1.98
5788 11910 0.319641 GGAGGGTGACGCGGATTATC 60.320 60.000 12.47 0.00 0.00 1.75
5789 11911 0.759436 AGGAGGGTGACGCGGATTAT 60.759 55.000 12.47 0.00 0.00 1.28
5790 11912 0.974010 AAGGAGGGTGACGCGGATTA 60.974 55.000 12.47 0.00 0.00 1.75
5791 11913 2.291043 AAGGAGGGTGACGCGGATT 61.291 57.895 12.47 0.00 0.00 3.01
5792 11914 2.683933 AAGGAGGGTGACGCGGAT 60.684 61.111 12.47 0.00 0.00 4.18
5793 11915 3.691342 CAAGGAGGGTGACGCGGA 61.691 66.667 12.47 0.00 0.00 5.54
5794 11916 3.649277 CTCAAGGAGGGTGACGCGG 62.649 68.421 12.47 0.00 0.00 6.46
5795 11917 2.125912 CTCAAGGAGGGTGACGCG 60.126 66.667 3.53 3.53 0.00 6.01
5824 11946 3.800863 GTCGTCCTCGAGCTCGCA 61.801 66.667 30.97 18.15 46.96 5.10
5842 11985 3.121929 TGAGGAGGAGTCATTAGCCTT 57.878 47.619 0.00 0.00 30.70 4.35
5878 12035 9.956640 ACAGAAAAGATTTGAGAACTCTATCAT 57.043 29.630 14.58 5.50 0.00 2.45
6064 12243 3.792736 GCCATACGTGCCCTCCCA 61.793 66.667 0.00 0.00 0.00 4.37
6171 12350 2.418628 GCAGATTAAGCGCCAACTAACA 59.581 45.455 2.29 0.00 0.00 2.41
6213 12396 7.067116 CAGTTTTTGTCATGCTTAAATGCTTG 58.933 34.615 0.00 0.00 38.81 4.01
6216 12399 5.695816 TCCAGTTTTTGTCATGCTTAAATGC 59.304 36.000 0.00 0.00 0.00 3.56
6361 12617 2.631384 TCATCAGACAAAGAAGGGGGA 58.369 47.619 0.00 0.00 0.00 4.81
6390 12646 7.201376 CGAAATTTGTTATGCACCAAATGAGAG 60.201 37.037 16.90 8.87 39.65 3.20
6456 12712 4.039973 TGGTAAATAGCTGCGCTTATAGGT 59.960 41.667 9.73 5.58 40.44 3.08
6518 12774 8.630037 TCTGTGATATCGTTGATGTACAGTAAT 58.370 33.333 0.33 0.00 34.02 1.89
6520 12776 7.415229 GTCTGTGATATCGTTGATGTACAGTA 58.585 38.462 0.33 0.00 34.02 2.74
6534 12790 3.235195 GCATACGACCGTCTGTGATATC 58.765 50.000 0.00 0.00 0.00 1.63
6668 12930 5.967088 TCCTCACAGTTATAAGAAGCAGAC 58.033 41.667 0.00 0.00 0.00 3.51
6762 13026 0.625316 TGGCCATTGCATACTGGACT 59.375 50.000 15.19 0.00 41.49 3.85
6812 13076 1.770658 TGGAATGACAGATGCTAGGGG 59.229 52.381 0.00 0.00 0.00 4.79
6825 13089 1.337118 GGCTGGTTTGGTTGGAATGA 58.663 50.000 0.00 0.00 0.00 2.57
6870 13134 0.469917 CAGTGTGTGTCTTCCCCTGT 59.530 55.000 0.00 0.00 0.00 4.00
6874 13138 0.468226 TGACCAGTGTGTGTCTTCCC 59.532 55.000 0.65 0.00 32.67 3.97
6903 13167 2.024414 GGTGTGAACTTGTTTGGCTCT 58.976 47.619 0.00 0.00 0.00 4.09
6921 13185 1.951602 TCATCGTCATCGTATTCCGGT 59.048 47.619 0.00 0.00 38.33 5.28
6933 13197 4.097286 TCATCGTACTCCATTTCATCGTCA 59.903 41.667 0.00 0.00 0.00 4.35
6954 13218 0.109919 CCGTGTCGATCTCGTTGTCA 60.110 55.000 0.00 0.00 40.80 3.58
6958 13222 1.909376 CATTCCGTGTCGATCTCGTT 58.091 50.000 0.00 0.00 40.80 3.85
6970 13237 3.876589 AACCTGACGCGCATTCCGT 62.877 57.895 5.73 0.00 42.31 4.69
6975 13242 3.583276 TTCCGAACCTGACGCGCAT 62.583 57.895 5.73 0.00 0.00 4.73
6993 13260 2.347691 GACCCCTTCCGGTGTTGGTT 62.348 60.000 0.00 0.00 35.79 3.67
6999 13266 2.347490 CAGTGACCCCTTCCGGTG 59.653 66.667 0.00 0.00 35.79 4.94
7010 13277 3.127533 GACCATGCCGGCAGTGAC 61.128 66.667 35.36 22.80 39.03 3.67
7012 13279 4.720902 TGGACCATGCCGGCAGTG 62.721 66.667 35.36 28.45 39.03 3.66
7032 13299 5.350365 GTGATCATCATTGCTTGCAATGTTT 59.650 36.000 33.34 24.09 41.78 2.83
7056 13323 1.526887 CTCCCTACATTATGCGTTGCG 59.473 52.381 0.00 0.00 0.00 4.85
7062 13329 2.873649 GCTGCTCCTCCCTACATTATGC 60.874 54.545 0.00 0.00 0.00 3.14
7070 13337 2.835431 GCTCGCTGCTCCTCCCTA 60.835 66.667 0.00 0.00 38.95 3.53
7180 13450 5.739935 GCCCATGTAAATTGGAATGATCACC 60.740 44.000 0.00 0.00 36.26 4.02
7197 13470 4.672251 GGCTCATCTTGCCCATGT 57.328 55.556 0.00 0.00 44.32 3.21
7270 13543 6.091713 CCAGAAAAATGTGAATGAGAAATGGC 59.908 38.462 0.00 0.00 0.00 4.40
7284 13560 4.397417 GTCAGATGCTAGCCAGAAAAATGT 59.603 41.667 13.29 0.00 0.00 2.71
7425 13704 3.998672 GGTGTTCGGCCCGTCTGA 61.999 66.667 1.63 0.00 0.00 3.27
7427 13706 4.003788 CTGGTGTTCGGCCCGTCT 62.004 66.667 1.63 0.00 0.00 4.18
7433 13712 1.079336 GTAGGACCTGGTGTTCGGC 60.079 63.158 2.82 0.00 0.00 5.54
7622 13907 2.647158 GCCGAAGTCGACCTCCCTT 61.647 63.158 13.01 0.00 43.02 3.95
7768 14053 8.492673 AGACGTCTGAATTTGCAAAGATATAA 57.507 30.769 19.30 0.00 0.00 0.98
7774 14155 6.573617 AAAAAGACGTCTGAATTTGCAAAG 57.426 33.333 20.85 3.65 0.00 2.77
7893 14274 4.982701 AACCTGCTGCCTGGCCAC 62.983 66.667 17.53 8.73 33.65 5.01
7894 14275 4.666253 GAACCTGCTGCCTGGCCA 62.666 66.667 17.53 4.71 33.65 5.36
7897 14278 3.052082 CGTGAACCTGCTGCCTGG 61.052 66.667 0.00 1.89 36.24 4.45
7902 14283 1.961277 GGTCACCGTGAACCTGCTG 60.961 63.158 5.14 0.00 0.00 4.41
7903 14284 2.140792 AGGTCACCGTGAACCTGCT 61.141 57.895 13.12 0.00 33.71 4.24
7904 14285 1.961277 CAGGTCACCGTGAACCTGC 60.961 63.158 24.72 7.19 38.15 4.85
7905 14286 1.961277 GCAGGTCACCGTGAACCTG 60.961 63.158 28.28 28.28 42.87 4.00
7906 14287 2.140792 AGCAGGTCACCGTGAACCT 61.141 57.895 13.12 13.50 33.71 3.50
7907 14288 1.961277 CAGCAGGTCACCGTGAACC 60.961 63.158 13.12 11.58 33.71 3.62
7908 14289 1.961277 CCAGCAGGTCACCGTGAAC 60.961 63.158 8.64 8.64 33.32 3.18
7909 14290 2.425592 CCAGCAGGTCACCGTGAA 59.574 61.111 1.88 0.00 0.00 3.18
7931 14312 1.893786 CCTCTCTGACGACCCCTTG 59.106 63.158 0.00 0.00 0.00 3.61
7933 14314 2.363147 GCCTCTCTGACGACCCCT 60.363 66.667 0.00 0.00 0.00 4.79
7935 14316 3.063084 ACGCCTCTCTGACGACCC 61.063 66.667 0.00 0.00 0.00 4.46
7936 14317 2.179517 CACGCCTCTCTGACGACC 59.820 66.667 0.00 0.00 0.00 4.79
7941 14322 4.426112 CAGCGCACGCCTCTCTGA 62.426 66.667 11.47 0.00 43.17 3.27
7942 14323 3.713205 ATCAGCGCACGCCTCTCTG 62.713 63.158 11.47 3.06 43.17 3.35
8177 14573 0.733150 GTACCTTGGCTCGCATTTCC 59.267 55.000 0.00 0.00 0.00 3.13
8673 15329 3.535561 CTCATTTGACGATAAGGCACCT 58.464 45.455 0.00 0.00 37.81 4.00
8675 15331 2.285834 CGCTCATTTGACGATAAGGCAC 60.286 50.000 0.00 0.00 37.81 5.01
8719 15375 0.331616 ATCTGTAGCCACAAACCCCC 59.668 55.000 0.00 0.00 33.22 5.40
8763 15419 9.512435 CTGATTTTGTGCAGAATAAAATAGGAG 57.488 33.333 0.00 0.00 39.05 3.69
8776 15432 4.589216 TTTTCCCTCTGATTTTGTGCAG 57.411 40.909 0.00 0.00 0.00 4.41
8884 15545 9.000486 GTTTGCTTATCTTTTCTTACTACACCT 58.000 33.333 0.00 0.00 0.00 4.00
9189 15879 1.593750 CTCCATACCAGAGCGCTGC 60.594 63.158 18.48 6.71 40.91 5.25
9235 15925 7.676731 GCTTTTAGCAGATTTTCAGATTAGC 57.323 36.000 0.00 0.00 41.89 3.09
9269 15959 7.119262 GCTAAAAAGAGCAAAGTAGATGGTGTA 59.881 37.037 0.00 0.00 42.36 2.90
9343 16038 1.248101 GGTTGCTATGGGGCGTGTTT 61.248 55.000 0.00 0.00 34.52 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.