Multiple sequence alignment - TraesCS1D01G094100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G094100 chr1D 100.000 3064 0 0 1 3064 79827418 79830481 0.000000e+00 5659.0
1 TraesCS1D01G094100 chr1D 92.478 1582 69 16 308 1883 79754093 79755630 0.000000e+00 2217.0
2 TraesCS1D01G094100 chr1D 85.465 1548 134 46 675 2171 111819231 111820738 0.000000e+00 1528.0
3 TraesCS1D01G094100 chr1D 94.790 499 22 2 1882 2376 79755666 79756164 0.000000e+00 774.0
4 TraesCS1D01G094100 chr1D 89.879 247 17 3 2105 2349 79818777 79819017 8.250000e-81 311.0
5 TraesCS1D01G094100 chr1D 86.517 89 11 1 228 315 306625426 306625338 2.510000e-16 97.1
6 TraesCS1D01G094100 chr1A 88.925 1544 94 30 865 2376 98581313 98582811 0.000000e+00 1832.0
7 TraesCS1D01G094100 chr1A 88.059 1566 88 33 801 2349 98522743 98524226 0.000000e+00 1764.0
8 TraesCS1D01G094100 chr1A 84.252 1778 185 47 602 2348 118819205 118820918 0.000000e+00 1644.0
9 TraesCS1D01G094100 chr1A 88.771 472 37 3 1343 1814 98289034 98289489 5.740000e-157 564.0
10 TraesCS1D01G094100 chr1A 90.618 437 20 8 1916 2349 98293823 98294241 7.420000e-156 560.0
11 TraesCS1D01G094100 chr1A 93.085 376 17 6 308 678 98580891 98581262 2.690000e-150 542.0
12 TraesCS1D01G094100 chr1A 88.558 437 17 10 308 737 98514907 98515317 1.640000e-137 499.0
13 TraesCS1D01G094100 chr1A 96.316 190 7 0 308 497 98288332 98288521 2.290000e-81 313.0
14 TraesCS1D01G094100 chr1A 95.714 70 3 0 2995 3064 53078140 53078209 2.500000e-21 113.0
15 TraesCS1D01G094100 chr1A 100.000 29 0 0 692 720 98581262 98581290 2.000000e-03 54.7
16 TraesCS1D01G094100 chr1B 83.620 1746 159 58 640 2349 171119755 171121409 0.000000e+00 1522.0
17 TraesCS1D01G094100 chr1B 88.419 1252 75 26 1068 2295 131453252 131454457 0.000000e+00 1445.0
18 TraesCS1D01G094100 chr1B 91.259 1064 57 8 826 1883 130678683 130679716 0.000000e+00 1417.0
19 TraesCS1D01G094100 chr1B 91.235 1061 59 9 826 1883 131236426 131237455 0.000000e+00 1413.0
20 TraesCS1D01G094100 chr1B 92.233 824 56 2 826 1649 131009326 131010141 0.000000e+00 1160.0
21 TraesCS1D01G094100 chr1B 88.300 906 57 20 1068 1954 131772428 131773303 0.000000e+00 1040.0
22 TraesCS1D01G094100 chr1B 85.331 634 77 9 2380 3001 12921593 12922222 2.580000e-180 641.0
23 TraesCS1D01G094100 chr1B 92.640 394 14 5 1983 2376 131773304 131773682 1.240000e-153 553.0
24 TraesCS1D01G094100 chr1B 88.406 483 17 8 309 791 131235982 131236425 2.080000e-151 545.0
25 TraesCS1D01G094100 chr1B 89.383 405 16 11 1882 2281 130679749 130680131 4.590000e-133 484.0
26 TraesCS1D01G094100 chr1B 88.889 405 18 11 1882 2281 131237488 131237870 9.940000e-130 473.0
27 TraesCS1D01G094100 chr1B 91.573 356 8 6 308 663 131772099 131772432 3.580000e-129 472.0
28 TraesCS1D01G094100 chr1B 91.292 356 10 4 308 663 131452922 131453256 1.660000e-127 466.0
29 TraesCS1D01G094100 chr1B 88.308 402 16 6 308 709 131008959 131009329 1.300000e-123 453.0
30 TraesCS1D01G094100 chr1B 96.198 263 10 0 308 570 130678290 130678552 6.070000e-117 431.0
31 TraesCS1D01G094100 chr1B 91.608 286 15 3 1882 2162 131010351 131010632 1.330000e-103 387.0
32 TraesCS1D01G094100 chr1B 92.233 103 4 2 2195 2297 131012285 131012383 3.180000e-30 143.0
33 TraesCS1D01G094100 chr1B 82.645 121 5 1 671 791 130678578 130678682 3.250000e-15 93.5
34 TraesCS1D01G094100 chr7D 87.403 643 65 7 2374 3001 603160273 603159632 0.000000e+00 725.0
35 TraesCS1D01G094100 chr7D 95.385 65 3 0 3000 3064 504279702 504279766 1.500000e-18 104.0
36 TraesCS1D01G094100 chr3D 85.962 634 76 8 2377 3002 188354164 188353536 0.000000e+00 665.0
37 TraesCS1D01G094100 chr3D 85.400 637 81 9 2372 3001 450546522 450547153 0.000000e+00 651.0
38 TraesCS1D01G094100 chr4D 86.028 637 66 12 2374 3001 34130967 34131589 0.000000e+00 662.0
39 TraesCS1D01G094100 chr4D 84.579 642 71 17 2376 3001 472497578 472496949 2.020000e-171 612.0
40 TraesCS1D01G094100 chr4D 85.913 575 67 9 2433 3001 386368455 386367889 4.370000e-168 601.0
41 TraesCS1D01G094100 chr4D 80.576 139 23 3 178 312 439145812 439145950 1.500000e-18 104.0
42 TraesCS1D01G094100 chr5B 84.615 637 75 15 2378 3001 682403012 682403638 2.020000e-171 612.0
43 TraesCS1D01G094100 chr3B 83.673 637 87 9 2374 3001 306584017 306584645 4.400000e-163 584.0
44 TraesCS1D01G094100 chr3B 86.242 298 28 4 17 313 136335705 136335420 8.250000e-81 311.0
45 TraesCS1D01G094100 chr3B 85.235 298 31 8 2376 2665 667158850 667158558 8.310000e-76 294.0
46 TraesCS1D01G094100 chr3B 85.366 82 6 6 247 324 704333509 704333588 2.530000e-11 80.5
47 TraesCS1D01G094100 chr5A 82.576 660 74 20 2376 3001 307706220 307706872 7.470000e-151 544.0
48 TraesCS1D01G094100 chr2D 100.000 291 0 0 1 291 378761037 378760747 3.480000e-149 538.0
49 TraesCS1D01G094100 chr4B 86.093 302 23 6 17 313 546660252 546659965 1.070000e-79 307.0
50 TraesCS1D01G094100 chr6B 87.500 96 12 0 2369 2464 139466533 139466628 8.980000e-21 111.0
51 TraesCS1D01G094100 chr6B 90.909 77 7 0 2376 2452 89204311 89204387 1.500000e-18 104.0
52 TraesCS1D01G094100 chr6B 86.517 89 12 0 2376 2464 599727090 599727002 6.990000e-17 99.0
53 TraesCS1D01G094100 chr6B 85.294 68 7 2 3000 3064 523125030 523124963 1.970000e-07 67.6
54 TraesCS1D01G094100 chr7B 77.143 210 34 12 2374 2574 605109073 605109277 3.230000e-20 110.0
55 TraesCS1D01G094100 chr7B 85.714 70 5 1 3000 3064 31113815 31113746 5.480000e-08 69.4
56 TraesCS1D01G094100 chr3A 80.576 139 23 3 178 312 327830051 327830189 1.500000e-18 104.0
57 TraesCS1D01G094100 chr3A 83.529 85 13 1 228 312 483243045 483243128 9.110000e-11 78.7
58 TraesCS1D01G094100 chr3A 86.364 66 8 1 3000 3064 300595320 300595255 1.520000e-08 71.3
59 TraesCS1D01G094100 chr7A 95.385 65 2 1 2998 3061 261445488 261445552 5.400000e-18 102.0
60 TraesCS1D01G094100 chr5D 87.209 86 10 1 228 312 327609790 327609705 2.510000e-16 97.1
61 TraesCS1D01G094100 chr4A 86.842 76 4 4 2995 3064 605634802 605634877 2.530000e-11 80.5
62 TraesCS1D01G094100 chr6A 86.957 69 5 1 3000 3064 504408638 504408706 1.180000e-09 75.0
63 TraesCS1D01G094100 chr6D 85.714 70 5 3 3000 3064 161292629 161292698 5.480000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G094100 chr1D 79827418 79830481 3063 False 5659.000000 5659 100.000000 1 3064 1 chr1D.!!$F2 3063
1 TraesCS1D01G094100 chr1D 111819231 111820738 1507 False 1528.000000 1528 85.465000 675 2171 1 chr1D.!!$F3 1496
2 TraesCS1D01G094100 chr1D 79754093 79756164 2071 False 1495.500000 2217 93.634000 308 2376 2 chr1D.!!$F4 2068
3 TraesCS1D01G094100 chr1A 98522743 98524226 1483 False 1764.000000 1764 88.059000 801 2349 1 chr1A.!!$F4 1548
4 TraesCS1D01G094100 chr1A 118819205 118820918 1713 False 1644.000000 1644 84.252000 602 2348 1 chr1A.!!$F5 1746
5 TraesCS1D01G094100 chr1A 98580891 98582811 1920 False 809.566667 1832 94.003333 308 2376 3 chr1A.!!$F7 2068
6 TraesCS1D01G094100 chr1A 98288332 98289489 1157 False 438.500000 564 92.543500 308 1814 2 chr1A.!!$F6 1506
7 TraesCS1D01G094100 chr1B 171119755 171121409 1654 False 1522.000000 1522 83.620000 640 2349 1 chr1B.!!$F2 1709
8 TraesCS1D01G094100 chr1B 131452922 131454457 1535 False 955.500000 1445 89.855500 308 2295 2 chr1B.!!$F6 1987
9 TraesCS1D01G094100 chr1B 131235982 131237870 1888 False 810.333333 1413 89.510000 309 2281 3 chr1B.!!$F5 1972
10 TraesCS1D01G094100 chr1B 131772099 131773682 1583 False 688.333333 1040 90.837667 308 2376 3 chr1B.!!$F7 2068
11 TraesCS1D01G094100 chr1B 12921593 12922222 629 False 641.000000 641 85.331000 2380 3001 1 chr1B.!!$F1 621
12 TraesCS1D01G094100 chr1B 130678290 130680131 1841 False 606.375000 1417 89.871250 308 2281 4 chr1B.!!$F3 1973
13 TraesCS1D01G094100 chr1B 131008959 131012383 3424 False 535.750000 1160 91.095500 308 2297 4 chr1B.!!$F4 1989
14 TraesCS1D01G094100 chr7D 603159632 603160273 641 True 725.000000 725 87.403000 2374 3001 1 chr7D.!!$R1 627
15 TraesCS1D01G094100 chr3D 188353536 188354164 628 True 665.000000 665 85.962000 2377 3002 1 chr3D.!!$R1 625
16 TraesCS1D01G094100 chr3D 450546522 450547153 631 False 651.000000 651 85.400000 2372 3001 1 chr3D.!!$F1 629
17 TraesCS1D01G094100 chr4D 34130967 34131589 622 False 662.000000 662 86.028000 2374 3001 1 chr4D.!!$F1 627
18 TraesCS1D01G094100 chr4D 472496949 472497578 629 True 612.000000 612 84.579000 2376 3001 1 chr4D.!!$R2 625
19 TraesCS1D01G094100 chr4D 386367889 386368455 566 True 601.000000 601 85.913000 2433 3001 1 chr4D.!!$R1 568
20 TraesCS1D01G094100 chr5B 682403012 682403638 626 False 612.000000 612 84.615000 2378 3001 1 chr5B.!!$F1 623
21 TraesCS1D01G094100 chr3B 306584017 306584645 628 False 584.000000 584 83.673000 2374 3001 1 chr3B.!!$F1 627
22 TraesCS1D01G094100 chr5A 307706220 307706872 652 False 544.000000 544 82.576000 2376 3001 1 chr5A.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 755 0.321122 GACTGCCTCTTGGTGACCAG 60.321 60.000 3.77 0.0 33.81 4.00 F
1314 1528 1.069358 CCTCCAAGAAGATCGCCTACC 59.931 57.143 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2191 0.034896 AGATTTGACGACCGCCTTGT 59.965 50.0 0.0 0.0 0.00 3.16 R
3037 5267 0.107557 AAACAACGTCAGTCCGGGTT 60.108 50.0 0.0 0.0 33.07 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.631452 TCTTAGATAGATCGTGCTATGAAATTG 57.369 33.333 4.89 0.00 31.45 2.32
55 56 9.416794 CTTAGATAGATCGTGCTATGAAATTGT 57.583 33.333 4.89 0.00 31.45 2.71
56 57 9.764363 TTAGATAGATCGTGCTATGAAATTGTT 57.236 29.630 4.89 0.00 31.45 2.83
57 58 8.668510 AGATAGATCGTGCTATGAAATTGTTT 57.331 30.769 4.89 0.00 31.45 2.83
58 59 8.768955 AGATAGATCGTGCTATGAAATTGTTTC 58.231 33.333 4.89 0.00 40.08 2.78
59 60 6.992063 AGATCGTGCTATGAAATTGTTTCT 57.008 33.333 4.32 0.00 40.32 2.52
60 61 6.779117 AGATCGTGCTATGAAATTGTTTCTG 58.221 36.000 4.32 0.00 40.32 3.02
61 62 5.940192 TCGTGCTATGAAATTGTTTCTGT 57.060 34.783 4.32 0.00 40.32 3.41
62 63 5.688823 TCGTGCTATGAAATTGTTTCTGTG 58.311 37.500 4.32 0.00 40.32 3.66
63 64 5.468409 TCGTGCTATGAAATTGTTTCTGTGA 59.532 36.000 4.32 0.00 40.32 3.58
64 65 6.149308 TCGTGCTATGAAATTGTTTCTGTGAT 59.851 34.615 4.32 0.00 40.32 3.06
65 66 7.333174 TCGTGCTATGAAATTGTTTCTGTGATA 59.667 33.333 4.32 0.00 40.32 2.15
66 67 7.426456 CGTGCTATGAAATTGTTTCTGTGATAC 59.574 37.037 4.32 0.00 40.32 2.24
67 68 8.236586 GTGCTATGAAATTGTTTCTGTGATACA 58.763 33.333 4.32 0.00 40.32 2.29
69 70 8.454106 GCTATGAAATTGTTTCTGTGATACAGT 58.546 33.333 8.64 0.00 46.03 3.55
73 74 9.500785 TGAAATTGTTTCTGTGATACAGTATGA 57.499 29.630 8.64 0.00 46.03 2.15
76 77 8.846943 ATTGTTTCTGTGATACAGTATGAACA 57.153 30.769 8.64 11.53 46.03 3.18
77 78 7.889589 TGTTTCTGTGATACAGTATGAACAG 57.110 36.000 19.00 19.00 46.03 3.16
78 79 7.441836 TGTTTCTGTGATACAGTATGAACAGT 58.558 34.615 21.80 0.00 46.03 3.55
79 80 7.384932 TGTTTCTGTGATACAGTATGAACAGTG 59.615 37.037 21.80 8.35 46.03 3.66
80 81 6.834168 TCTGTGATACAGTATGAACAGTGA 57.166 37.500 21.80 9.86 46.03 3.41
81 82 7.410120 TCTGTGATACAGTATGAACAGTGAT 57.590 36.000 21.80 0.00 46.03 3.06
82 83 7.260603 TCTGTGATACAGTATGAACAGTGATG 58.739 38.462 21.80 7.39 46.03 3.07
83 84 6.935167 TGTGATACAGTATGAACAGTGATGT 58.065 36.000 0.00 0.00 39.69 3.06
84 85 6.813152 TGTGATACAGTATGAACAGTGATGTG 59.187 38.462 0.00 0.00 39.69 3.21
85 86 6.813649 GTGATACAGTATGAACAGTGATGTGT 59.186 38.462 0.00 0.00 39.69 3.72
86 87 6.813152 TGATACAGTATGAACAGTGATGTGTG 59.187 38.462 0.00 0.00 39.69 3.82
87 88 4.318332 ACAGTATGAACAGTGATGTGTGG 58.682 43.478 0.00 0.00 39.69 4.17
88 89 3.125829 CAGTATGAACAGTGATGTGTGGC 59.874 47.826 0.00 0.00 39.69 5.01
89 90 2.275134 ATGAACAGTGATGTGTGGCA 57.725 45.000 0.00 0.00 0.00 4.92
90 91 1.596603 TGAACAGTGATGTGTGGCAG 58.403 50.000 0.00 0.00 0.00 4.85
91 92 1.140652 TGAACAGTGATGTGTGGCAGA 59.859 47.619 0.00 0.00 0.00 4.26
92 93 1.532868 GAACAGTGATGTGTGGCAGAC 59.467 52.381 8.00 8.00 0.00 3.51
93 94 0.469494 ACAGTGATGTGTGGCAGACA 59.531 50.000 20.38 20.38 0.00 3.41
94 95 1.134128 ACAGTGATGTGTGGCAGACAA 60.134 47.619 21.92 3.04 35.91 3.18
95 96 1.948834 CAGTGATGTGTGGCAGACAAA 59.051 47.619 21.92 10.32 35.91 2.83
96 97 1.949525 AGTGATGTGTGGCAGACAAAC 59.050 47.619 21.92 20.66 37.85 2.93
100 101 2.346766 TGTGTGGCAGACAAACATCT 57.653 45.000 15.81 0.00 42.37 2.90
101 102 3.483808 TGTGTGGCAGACAAACATCTA 57.516 42.857 15.81 0.00 42.37 1.98
102 103 4.019792 TGTGTGGCAGACAAACATCTAT 57.980 40.909 15.81 0.00 42.37 1.98
103 104 3.752747 TGTGTGGCAGACAAACATCTATG 59.247 43.478 15.81 0.00 42.37 2.23
104 105 3.127548 GTGTGGCAGACAAACATCTATGG 59.872 47.826 10.26 0.00 37.27 2.74
105 106 3.244875 TGTGGCAGACAAACATCTATGGT 60.245 43.478 0.00 0.00 0.00 3.55
106 107 4.019771 TGTGGCAGACAAACATCTATGGTA 60.020 41.667 0.00 0.00 0.00 3.25
107 108 4.332819 GTGGCAGACAAACATCTATGGTAC 59.667 45.833 0.00 0.00 0.00 3.34
119 120 2.428187 TGGTACAGTGGTTGCCGG 59.572 61.111 0.00 0.00 0.00 6.13
120 121 3.053896 GGTACAGTGGTTGCCGGC 61.054 66.667 22.73 22.73 0.00 6.13
121 122 3.419759 GTACAGTGGTTGCCGGCG 61.420 66.667 23.90 7.94 0.00 6.46
125 126 4.760047 AGTGGTTGCCGGCGCTAG 62.760 66.667 23.90 1.17 35.36 3.42
128 129 4.524318 GGTTGCCGGCGCTAGCTA 62.524 66.667 23.90 11.92 44.37 3.32
129 130 2.510691 GTTGCCGGCGCTAGCTAA 60.511 61.111 23.90 5.32 44.37 3.09
130 131 2.202878 TTGCCGGCGCTAGCTAAG 60.203 61.111 23.90 3.21 44.37 2.18
131 132 3.733344 TTGCCGGCGCTAGCTAAGG 62.733 63.158 23.90 13.33 44.37 2.69
132 133 4.971125 GCCGGCGCTAGCTAAGGG 62.971 72.222 12.58 9.63 44.37 3.95
133 134 4.301027 CCGGCGCTAGCTAAGGGG 62.301 72.222 13.93 3.07 44.37 4.79
134 135 3.537874 CGGCGCTAGCTAAGGGGT 61.538 66.667 13.93 0.00 44.37 4.95
135 136 2.109181 GGCGCTAGCTAAGGGGTG 59.891 66.667 13.93 0.00 44.37 4.61
136 137 2.732619 GGCGCTAGCTAAGGGGTGT 61.733 63.158 13.93 0.00 44.37 4.16
137 138 1.521681 GCGCTAGCTAAGGGGTGTG 60.522 63.158 13.93 0.00 41.01 3.82
138 139 1.144057 CGCTAGCTAAGGGGTGTGG 59.856 63.158 13.93 0.00 34.56 4.17
139 140 1.153147 GCTAGCTAAGGGGTGTGGC 60.153 63.158 7.70 0.00 0.00 5.01
140 141 1.527370 CTAGCTAAGGGGTGTGGCC 59.473 63.158 0.00 0.00 0.00 5.36
141 142 1.229690 TAGCTAAGGGGTGTGGCCA 60.230 57.895 0.00 0.00 39.65 5.36
142 143 0.623324 TAGCTAAGGGGTGTGGCCAT 60.623 55.000 9.72 0.00 39.65 4.40
143 144 1.754234 GCTAAGGGGTGTGGCCATG 60.754 63.158 9.72 0.00 39.65 3.66
144 145 1.076777 CTAAGGGGTGTGGCCATGG 60.077 63.158 9.72 7.63 39.65 3.66
145 146 1.854979 TAAGGGGTGTGGCCATGGT 60.855 57.895 9.72 0.00 39.65 3.55
146 147 2.148723 TAAGGGGTGTGGCCATGGTG 62.149 60.000 9.72 0.00 39.65 4.17
148 149 4.992740 GGGTGTGGCCATGGTGCA 62.993 66.667 9.72 7.26 39.65 4.57
149 150 2.681064 GGTGTGGCCATGGTGCAT 60.681 61.111 9.72 0.00 37.17 3.96
150 151 2.713967 GGTGTGGCCATGGTGCATC 61.714 63.158 9.72 6.72 37.17 3.91
151 152 1.978080 GTGTGGCCATGGTGCATCA 60.978 57.895 9.72 0.00 0.00 3.07
152 153 1.228800 TGTGGCCATGGTGCATCAA 60.229 52.632 9.72 0.00 0.00 2.57
153 154 0.615261 TGTGGCCATGGTGCATCAAT 60.615 50.000 9.72 0.00 0.00 2.57
154 155 0.538118 GTGGCCATGGTGCATCAATT 59.462 50.000 9.72 0.00 0.00 2.32
155 156 1.065998 GTGGCCATGGTGCATCAATTT 60.066 47.619 9.72 0.00 0.00 1.82
156 157 1.207570 TGGCCATGGTGCATCAATTTC 59.792 47.619 14.67 0.00 0.00 2.17
157 158 1.483415 GGCCATGGTGCATCAATTTCT 59.517 47.619 14.67 0.00 0.00 2.52
158 159 2.694628 GGCCATGGTGCATCAATTTCTA 59.305 45.455 14.67 0.00 0.00 2.10
159 160 3.322828 GGCCATGGTGCATCAATTTCTAT 59.677 43.478 14.67 0.00 0.00 1.98
160 161 4.523943 GGCCATGGTGCATCAATTTCTATA 59.476 41.667 14.67 0.00 0.00 1.31
161 162 5.010922 GGCCATGGTGCATCAATTTCTATAA 59.989 40.000 14.67 0.00 0.00 0.98
162 163 6.462768 GGCCATGGTGCATCAATTTCTATAAA 60.463 38.462 14.67 0.00 0.00 1.40
163 164 6.985645 GCCATGGTGCATCAATTTCTATAAAA 59.014 34.615 14.67 0.00 0.00 1.52
164 165 7.170320 GCCATGGTGCATCAATTTCTATAAAAG 59.830 37.037 14.67 0.00 0.00 2.27
165 166 7.654520 CCATGGTGCATCAATTTCTATAAAAGG 59.345 37.037 2.42 0.00 0.00 3.11
166 167 7.716799 TGGTGCATCAATTTCTATAAAAGGT 57.283 32.000 0.00 0.00 0.00 3.50
167 168 7.771183 TGGTGCATCAATTTCTATAAAAGGTC 58.229 34.615 0.00 0.00 0.00 3.85
168 169 7.615365 TGGTGCATCAATTTCTATAAAAGGTCT 59.385 33.333 0.00 0.00 0.00 3.85
169 170 9.120538 GGTGCATCAATTTCTATAAAAGGTCTA 57.879 33.333 0.00 0.00 0.00 2.59
197 198 9.624373 ATGATGATAGAATTAGGAACCATATGC 57.376 33.333 0.00 0.00 0.00 3.14
198 199 8.829746 TGATGATAGAATTAGGAACCATATGCT 58.170 33.333 0.00 0.00 0.00 3.79
199 200 9.323985 GATGATAGAATTAGGAACCATATGCTC 57.676 37.037 0.00 0.00 0.00 4.26
200 201 8.441311 TGATAGAATTAGGAACCATATGCTCT 57.559 34.615 0.00 0.00 0.00 4.09
201 202 8.884323 TGATAGAATTAGGAACCATATGCTCTT 58.116 33.333 0.00 0.00 0.00 2.85
202 203 9.377312 GATAGAATTAGGAACCATATGCTCTTC 57.623 37.037 0.00 0.00 0.00 2.87
203 204 6.226787 AGAATTAGGAACCATATGCTCTTCG 58.773 40.000 0.00 0.00 0.00 3.79
204 205 5.552870 ATTAGGAACCATATGCTCTTCGT 57.447 39.130 0.00 2.50 0.00 3.85
205 206 6.665992 ATTAGGAACCATATGCTCTTCGTA 57.334 37.500 0.00 1.63 0.00 3.43
206 207 6.665992 TTAGGAACCATATGCTCTTCGTAT 57.334 37.500 0.00 0.00 0.00 3.06
207 208 4.887748 AGGAACCATATGCTCTTCGTATG 58.112 43.478 0.00 0.00 41.95 2.39
208 209 4.588951 AGGAACCATATGCTCTTCGTATGA 59.411 41.667 0.00 0.00 43.96 2.15
209 210 4.926238 GGAACCATATGCTCTTCGTATGAG 59.074 45.833 0.00 0.00 43.96 2.90
210 211 5.509840 GGAACCATATGCTCTTCGTATGAGT 60.510 44.000 0.00 1.14 43.96 3.41
211 212 5.537300 ACCATATGCTCTTCGTATGAGTT 57.463 39.130 0.00 0.00 43.96 3.01
212 213 6.650427 ACCATATGCTCTTCGTATGAGTTA 57.350 37.500 0.00 0.00 43.96 2.24
213 214 7.233389 ACCATATGCTCTTCGTATGAGTTAT 57.767 36.000 0.00 0.00 43.96 1.89
214 215 7.316640 ACCATATGCTCTTCGTATGAGTTATC 58.683 38.462 0.00 0.00 43.96 1.75
215 216 7.039714 ACCATATGCTCTTCGTATGAGTTATCA 60.040 37.037 0.00 0.00 43.96 2.15
216 217 7.814587 CCATATGCTCTTCGTATGAGTTATCAA 59.185 37.037 0.00 0.00 43.96 2.57
217 218 9.196552 CATATGCTCTTCGTATGAGTTATCAAA 57.803 33.333 0.00 0.00 43.96 2.69
218 219 9.935241 ATATGCTCTTCGTATGAGTTATCAAAT 57.065 29.630 0.00 0.00 39.39 2.32
219 220 8.668510 ATGCTCTTCGTATGAGTTATCAAATT 57.331 30.769 0.00 0.00 39.39 1.82
220 221 8.492673 TGCTCTTCGTATGAGTTATCAAATTT 57.507 30.769 0.00 0.00 39.39 1.82
221 222 8.946085 TGCTCTTCGTATGAGTTATCAAATTTT 58.054 29.630 0.00 0.00 39.39 1.82
222 223 9.774742 GCTCTTCGTATGAGTTATCAAATTTTT 57.225 29.630 0.00 0.00 39.39 1.94
289 290 6.904954 AATGTATTTTAGTTGAAACGTGCG 57.095 33.333 0.00 0.00 0.00 5.34
290 291 5.406767 TGTATTTTAGTTGAAACGTGCGT 57.593 34.783 0.00 0.00 0.00 5.24
291 292 5.808403 TGTATTTTAGTTGAAACGTGCGTT 58.192 33.333 3.97 3.97 40.45 4.84
292 293 5.677612 TGTATTTTAGTTGAAACGTGCGTTG 59.322 36.000 10.81 0.00 38.47 4.10
293 294 2.093972 TTAGTTGAAACGTGCGTTGC 57.906 45.000 10.81 9.55 38.47 4.17
294 295 1.007580 TAGTTGAAACGTGCGTTGCA 58.992 45.000 13.48 13.48 41.51 4.08
458 460 3.420943 GTGCCACACCTGTGTCAC 58.579 61.111 4.01 4.01 45.57 3.67
577 739 3.771160 CCTGGCGGCGTAAGGACT 61.771 66.667 20.87 0.00 32.43 3.85
578 740 2.509336 CTGGCGGCGTAAGGACTG 60.509 66.667 9.37 0.00 38.28 3.51
579 741 4.752879 TGGCGGCGTAAGGACTGC 62.753 66.667 9.37 0.00 38.28 4.40
582 744 2.202756 CGGCGTAAGGACTGCCTC 60.203 66.667 0.00 0.00 46.28 4.70
583 745 2.711922 CGGCGTAAGGACTGCCTCT 61.712 63.158 0.00 0.00 46.28 3.69
584 746 1.597461 GGCGTAAGGACTGCCTCTT 59.403 57.895 0.00 0.00 46.28 2.85
585 747 0.741221 GGCGTAAGGACTGCCTCTTG 60.741 60.000 0.00 0.00 46.28 3.02
586 748 0.741221 GCGTAAGGACTGCCTCTTGG 60.741 60.000 0.00 0.00 46.28 3.61
587 749 0.608640 CGTAAGGACTGCCTCTTGGT 59.391 55.000 0.00 0.00 46.28 3.67
588 750 1.673033 CGTAAGGACTGCCTCTTGGTG 60.673 57.143 0.00 0.00 46.28 4.17
589 751 1.623811 GTAAGGACTGCCTCTTGGTGA 59.376 52.381 0.00 0.00 46.28 4.02
590 752 0.398318 AAGGACTGCCTCTTGGTGAC 59.602 55.000 0.00 0.00 46.28 3.67
591 753 1.003233 GGACTGCCTCTTGGTGACC 60.003 63.158 0.00 0.00 35.27 4.02
592 754 1.754745 GACTGCCTCTTGGTGACCA 59.245 57.895 0.00 0.00 35.27 4.02
593 755 0.321122 GACTGCCTCTTGGTGACCAG 60.321 60.000 3.77 0.00 33.81 4.00
863 1062 2.032681 GCTTGGTTCCCACGCTCT 59.967 61.111 4.64 0.00 44.01 4.09
975 1175 3.917760 GTCCATCGCCTCCTCCCG 61.918 72.222 0.00 0.00 0.00 5.14
984 1184 3.083997 CTCCTCCCGTTCCCCCAG 61.084 72.222 0.00 0.00 0.00 4.45
986 1186 3.400054 CCTCCCGTTCCCCCAGAC 61.400 72.222 0.00 0.00 0.00 3.51
988 1188 3.925914 CTCCCGTTCCCCCAGACCT 62.926 68.421 0.00 0.00 0.00 3.85
992 1192 2.955881 CGTTCCCCCAGACCTCCAC 61.956 68.421 0.00 0.00 0.00 4.02
993 1193 1.539124 GTTCCCCCAGACCTCCACT 60.539 63.158 0.00 0.00 0.00 4.00
997 1197 3.721706 CCCAGACCTCCACTGCCC 61.722 72.222 0.00 0.00 34.47 5.36
998 1198 3.721706 CCAGACCTCCACTGCCCC 61.722 72.222 0.00 0.00 34.47 5.80
999 1199 2.930019 CAGACCTCCACTGCCCCA 60.930 66.667 0.00 0.00 0.00 4.96
1003 1203 4.864334 CCTCCACTGCCCCATCGC 62.864 72.222 0.00 0.00 0.00 4.58
1056 1256 4.147449 CCGGCCTGCGTGAGATCA 62.147 66.667 0.00 0.00 0.00 2.92
1119 1321 1.707427 AGGGGAGAGTTGCAATGAAGT 59.293 47.619 0.59 0.00 0.00 3.01
1169 1380 1.826024 GATGGTGCTGATCCCGTCT 59.174 57.895 0.00 0.00 34.52 4.18
1314 1528 1.069358 CCTCCAAGAAGATCGCCTACC 59.931 57.143 0.00 0.00 0.00 3.18
1591 1956 2.432628 CTGTTCGTCCACCTCGGC 60.433 66.667 0.00 0.00 33.14 5.54
1663 2028 1.599576 GGGAGCGCCTCTTCTTCTT 59.400 57.895 2.29 0.00 0.00 2.52
1697 2062 2.486042 GTCTCCGACGCAGAGGAC 59.514 66.667 0.00 0.00 34.74 3.85
1807 2186 2.930562 GCCCACCCAGTGAGGACT 60.931 66.667 4.82 0.00 41.22 3.85
1824 2210 2.915659 TGAGGACAAGGCGGTCGT 60.916 61.111 7.16 7.16 38.70 4.34
1828 2214 1.595929 GGACAAGGCGGTCGTCAAA 60.596 57.895 0.00 0.00 38.70 2.69
1916 2348 3.885901 GGAATTAGGGACCTGAAAGATGC 59.114 47.826 0.00 0.00 34.07 3.91
1919 2351 0.915364 AGGGACCTGAAAGATGCCTC 59.085 55.000 0.00 0.00 34.07 4.70
1943 2375 2.102252 TGCAAGTTTTTGGGTCATGGAC 59.898 45.455 0.00 0.00 34.79 4.02
1992 2434 2.507110 TAGCCAGCCAGTCAAGACGC 62.507 60.000 0.00 0.00 36.20 5.19
2108 2611 0.251916 TGTTTGGATAGGCCCGTGAG 59.748 55.000 0.00 0.00 34.97 3.51
2312 4479 2.038952 TCTGTTGCAGCTACCTGATGTT 59.961 45.455 4.43 0.00 41.77 2.71
2352 4523 1.156736 CGTGCCTTCTTGTAACAGGG 58.843 55.000 0.00 0.00 0.00 4.45
2355 4526 1.073284 TGCCTTCTTGTAACAGGGACC 59.927 52.381 0.00 0.00 0.00 4.46
2479 4651 2.975799 GCTTCCGCGTTTGGGTCA 60.976 61.111 4.92 0.00 0.00 4.02
2587 4766 0.329931 TTAAAGCCCGCCATGAAGGA 59.670 50.000 7.83 0.00 41.22 3.36
2590 4769 4.467084 GCCCGCCATGAAGGACGA 62.467 66.667 7.83 0.00 41.22 4.20
2687 4876 3.975591 TGGTCGTCCTCGGGGTCT 61.976 66.667 0.00 0.00 37.69 3.85
2694 4883 3.775654 CCTCGGGGTCTGTGAGGC 61.776 72.222 0.00 0.00 42.53 4.70
2695 4884 2.997315 CTCGGGGTCTGTGAGGCA 60.997 66.667 0.00 0.00 0.00 4.75
2755 4945 0.620556 ATCCAGAGGGCGTTCATGTT 59.379 50.000 0.00 0.00 0.00 2.71
2759 4949 1.002624 GAGGGCGTTCATGTTGGGA 60.003 57.895 0.00 0.00 0.00 4.37
3002 5232 0.247736 CTGTCCAGGAGTAGCGCTTT 59.752 55.000 18.68 4.02 0.00 3.51
3003 5233 0.685097 TGTCCAGGAGTAGCGCTTTT 59.315 50.000 18.68 3.55 0.00 2.27
3004 5234 1.337823 TGTCCAGGAGTAGCGCTTTTC 60.338 52.381 18.68 13.97 0.00 2.29
3005 5235 0.249398 TCCAGGAGTAGCGCTTTTCC 59.751 55.000 24.62 24.62 0.00 3.13
3006 5236 0.250513 CCAGGAGTAGCGCTTTTCCT 59.749 55.000 27.46 27.46 40.63 3.36
3007 5237 1.646189 CAGGAGTAGCGCTTTTCCTC 58.354 55.000 29.26 21.74 37.97 3.71
3008 5238 1.205893 CAGGAGTAGCGCTTTTCCTCT 59.794 52.381 29.26 14.68 37.97 3.69
3009 5239 1.903183 AGGAGTAGCGCTTTTCCTCTT 59.097 47.619 27.46 16.72 35.11 2.85
3010 5240 2.003301 GGAGTAGCGCTTTTCCTCTTG 58.997 52.381 24.69 0.00 0.00 3.02
3011 5241 2.613223 GGAGTAGCGCTTTTCCTCTTGT 60.613 50.000 24.69 0.00 0.00 3.16
3012 5242 3.067833 GAGTAGCGCTTTTCCTCTTGTT 58.932 45.455 18.68 0.00 0.00 2.83
3013 5243 3.477530 AGTAGCGCTTTTCCTCTTGTTT 58.522 40.909 18.68 0.00 0.00 2.83
3014 5244 2.781945 AGCGCTTTTCCTCTTGTTTG 57.218 45.000 2.64 0.00 0.00 2.93
3015 5245 1.338020 AGCGCTTTTCCTCTTGTTTGG 59.662 47.619 2.64 0.00 0.00 3.28
3016 5246 1.602920 GCGCTTTTCCTCTTGTTTGGG 60.603 52.381 0.00 0.00 0.00 4.12
3017 5247 1.953686 CGCTTTTCCTCTTGTTTGGGA 59.046 47.619 0.00 0.00 0.00 4.37
3018 5248 2.287608 CGCTTTTCCTCTTGTTTGGGAC 60.288 50.000 0.00 0.00 0.00 4.46
3019 5249 2.959030 GCTTTTCCTCTTGTTTGGGACT 59.041 45.455 0.00 0.00 0.00 3.85
3020 5250 3.004839 GCTTTTCCTCTTGTTTGGGACTC 59.995 47.826 0.00 0.00 0.00 3.36
3021 5251 4.464947 CTTTTCCTCTTGTTTGGGACTCT 58.535 43.478 0.00 0.00 0.00 3.24
3022 5252 5.621193 CTTTTCCTCTTGTTTGGGACTCTA 58.379 41.667 0.00 0.00 0.00 2.43
3023 5253 5.640158 TTTCCTCTTGTTTGGGACTCTAA 57.360 39.130 0.00 0.00 0.00 2.10
3024 5254 5.843019 TTCCTCTTGTTTGGGACTCTAAT 57.157 39.130 0.00 0.00 0.00 1.73
3025 5255 5.843019 TCCTCTTGTTTGGGACTCTAATT 57.157 39.130 0.00 0.00 0.00 1.40
3026 5256 5.560724 TCCTCTTGTTTGGGACTCTAATTG 58.439 41.667 0.00 0.00 0.00 2.32
3027 5257 4.702131 CCTCTTGTTTGGGACTCTAATTGG 59.298 45.833 0.00 0.00 0.00 3.16
3028 5258 4.079253 TCTTGTTTGGGACTCTAATTGGC 58.921 43.478 0.00 0.00 0.00 4.52
3029 5259 3.517296 TGTTTGGGACTCTAATTGGCA 57.483 42.857 0.00 0.00 0.00 4.92
3030 5260 4.046286 TGTTTGGGACTCTAATTGGCAT 57.954 40.909 0.00 0.00 0.00 4.40
3031 5261 3.763360 TGTTTGGGACTCTAATTGGCATG 59.237 43.478 0.00 0.00 0.00 4.06
3032 5262 4.016444 GTTTGGGACTCTAATTGGCATGA 58.984 43.478 0.00 0.00 0.00 3.07
3033 5263 4.314522 TTGGGACTCTAATTGGCATGAA 57.685 40.909 0.00 0.00 0.00 2.57
3034 5264 4.314522 TGGGACTCTAATTGGCATGAAA 57.685 40.909 0.00 0.00 0.00 2.69
3035 5265 4.016444 TGGGACTCTAATTGGCATGAAAC 58.984 43.478 0.00 0.00 0.00 2.78
3036 5266 4.263905 TGGGACTCTAATTGGCATGAAACT 60.264 41.667 0.00 0.00 0.00 2.66
3037 5267 5.045213 TGGGACTCTAATTGGCATGAAACTA 60.045 40.000 0.00 0.00 0.00 2.24
3038 5268 5.885912 GGGACTCTAATTGGCATGAAACTAA 59.114 40.000 0.00 0.00 0.00 2.24
3039 5269 6.183360 GGGACTCTAATTGGCATGAAACTAAC 60.183 42.308 0.00 0.00 0.00 2.34
3040 5270 6.183360 GGACTCTAATTGGCATGAAACTAACC 60.183 42.308 0.00 0.00 0.00 2.85
3041 5271 5.652452 ACTCTAATTGGCATGAAACTAACCC 59.348 40.000 0.00 0.00 0.00 4.11
3042 5272 3.866883 AATTGGCATGAAACTAACCCG 57.133 42.857 0.00 0.00 0.00 5.28
3043 5273 1.540267 TTGGCATGAAACTAACCCGG 58.460 50.000 0.00 0.00 0.00 5.73
3044 5274 0.693622 TGGCATGAAACTAACCCGGA 59.306 50.000 0.73 0.00 0.00 5.14
3045 5275 1.092348 GGCATGAAACTAACCCGGAC 58.908 55.000 0.73 0.00 0.00 4.79
3046 5276 1.339727 GGCATGAAACTAACCCGGACT 60.340 52.381 0.73 0.00 0.00 3.85
3047 5277 1.737793 GCATGAAACTAACCCGGACTG 59.262 52.381 0.73 0.00 0.00 3.51
3048 5278 2.614481 GCATGAAACTAACCCGGACTGA 60.614 50.000 0.73 0.00 0.00 3.41
3049 5279 2.825861 TGAAACTAACCCGGACTGAC 57.174 50.000 0.73 0.00 0.00 3.51
3050 5280 1.000060 TGAAACTAACCCGGACTGACG 60.000 52.381 0.73 0.00 0.00 4.35
3051 5281 1.000171 GAAACTAACCCGGACTGACGT 60.000 52.381 0.73 0.00 0.00 4.34
3052 5282 1.043022 AACTAACCCGGACTGACGTT 58.957 50.000 0.73 0.00 0.00 3.99
3053 5283 0.316204 ACTAACCCGGACTGACGTTG 59.684 55.000 0.73 0.00 0.00 4.10
3054 5284 0.316204 CTAACCCGGACTGACGTTGT 59.684 55.000 0.73 0.00 0.00 3.32
3055 5285 0.752054 TAACCCGGACTGACGTTGTT 59.248 50.000 0.73 0.00 33.51 2.83
3056 5286 0.107557 AACCCGGACTGACGTTGTTT 60.108 50.000 0.73 0.00 0.00 2.83
3057 5287 0.107557 ACCCGGACTGACGTTGTTTT 60.108 50.000 0.73 0.00 0.00 2.43
3058 5288 0.584876 CCCGGACTGACGTTGTTTTC 59.415 55.000 0.73 0.00 0.00 2.29
3059 5289 1.292061 CCGGACTGACGTTGTTTTCA 58.708 50.000 0.00 0.00 0.00 2.69
3060 5290 1.260561 CCGGACTGACGTTGTTTTCAG 59.739 52.381 0.00 0.00 44.19 3.02
3061 5291 1.332904 CGGACTGACGTTGTTTTCAGC 60.333 52.381 0.00 0.00 42.67 4.26
3062 5292 1.668751 GGACTGACGTTGTTTTCAGCA 59.331 47.619 0.00 0.00 42.67 4.41
3063 5293 2.286418 GGACTGACGTTGTTTTCAGCAG 60.286 50.000 0.00 0.00 42.67 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.631452 CAATTTCATAGCACGATCTATCTAAGA 57.369 33.333 0.00 0.00 39.02 2.10
29 30 9.416794 ACAATTTCATAGCACGATCTATCTAAG 57.583 33.333 0.00 0.00 0.00 2.18
30 31 9.764363 AACAATTTCATAGCACGATCTATCTAA 57.236 29.630 0.00 0.00 0.00 2.10
31 32 9.764363 AAACAATTTCATAGCACGATCTATCTA 57.236 29.630 0.00 0.00 0.00 1.98
32 33 8.668510 AAACAATTTCATAGCACGATCTATCT 57.331 30.769 0.00 0.00 0.00 1.98
33 34 8.768955 AGAAACAATTTCATAGCACGATCTATC 58.231 33.333 4.25 0.00 42.10 2.08
34 35 8.554528 CAGAAACAATTTCATAGCACGATCTAT 58.445 33.333 4.25 0.00 42.10 1.98
35 36 7.549134 ACAGAAACAATTTCATAGCACGATCTA 59.451 33.333 4.25 0.00 42.10 1.98
36 37 6.372659 ACAGAAACAATTTCATAGCACGATCT 59.627 34.615 4.25 0.00 42.10 2.75
37 38 6.467047 CACAGAAACAATTTCATAGCACGATC 59.533 38.462 4.25 0.00 42.10 3.69
38 39 6.149308 TCACAGAAACAATTTCATAGCACGAT 59.851 34.615 4.25 0.00 42.10 3.73
39 40 5.468409 TCACAGAAACAATTTCATAGCACGA 59.532 36.000 4.25 0.00 42.10 4.35
40 41 5.688823 TCACAGAAACAATTTCATAGCACG 58.311 37.500 4.25 0.00 42.10 5.34
41 42 8.236586 TGTATCACAGAAACAATTTCATAGCAC 58.763 33.333 4.25 0.00 42.10 4.40
42 43 8.334263 TGTATCACAGAAACAATTTCATAGCA 57.666 30.769 4.25 0.00 42.10 3.49
57 58 7.093771 ACATCACTGTTCATACTGTATCACAGA 60.094 37.037 27.77 15.97 39.57 3.41
58 59 7.009907 CACATCACTGTTCATACTGTATCACAG 59.990 40.741 23.20 23.20 42.08 3.66
59 60 6.813152 CACATCACTGTTCATACTGTATCACA 59.187 38.462 0.00 3.66 35.03 3.58
60 61 6.813649 ACACATCACTGTTCATACTGTATCAC 59.186 38.462 0.00 0.00 35.03 3.06
61 62 6.813152 CACACATCACTGTTCATACTGTATCA 59.187 38.462 0.00 0.00 35.03 2.15
62 63 6.256539 CCACACATCACTGTTCATACTGTATC 59.743 42.308 0.00 0.00 35.03 2.24
63 64 6.108687 CCACACATCACTGTTCATACTGTAT 58.891 40.000 0.00 0.00 35.03 2.29
64 65 5.478407 CCACACATCACTGTTCATACTGTA 58.522 41.667 0.00 0.00 35.03 2.74
65 66 4.318332 CCACACATCACTGTTCATACTGT 58.682 43.478 0.00 0.00 36.96 3.55
66 67 3.125829 GCCACACATCACTGTTCATACTG 59.874 47.826 0.00 0.00 31.62 2.74
67 68 3.244526 TGCCACACATCACTGTTCATACT 60.245 43.478 0.00 0.00 31.62 2.12
68 69 3.073678 TGCCACACATCACTGTTCATAC 58.926 45.455 0.00 0.00 31.62 2.39
69 70 3.007831 TCTGCCACACATCACTGTTCATA 59.992 43.478 0.00 0.00 31.62 2.15
70 71 2.156917 CTGCCACACATCACTGTTCAT 58.843 47.619 0.00 0.00 31.62 2.57
71 72 1.140652 TCTGCCACACATCACTGTTCA 59.859 47.619 0.00 0.00 31.62 3.18
72 73 1.532868 GTCTGCCACACATCACTGTTC 59.467 52.381 0.00 0.00 31.62 3.18
73 74 1.134128 TGTCTGCCACACATCACTGTT 60.134 47.619 0.00 0.00 31.62 3.16
74 75 0.469494 TGTCTGCCACACATCACTGT 59.531 50.000 0.00 0.00 35.44 3.55
75 76 1.596603 TTGTCTGCCACACATCACTG 58.403 50.000 0.00 0.00 33.41 3.66
76 77 1.949525 GTTTGTCTGCCACACATCACT 59.050 47.619 0.00 0.00 33.41 3.41
77 78 1.675483 TGTTTGTCTGCCACACATCAC 59.325 47.619 0.00 0.00 33.41 3.06
78 79 2.049888 TGTTTGTCTGCCACACATCA 57.950 45.000 0.00 0.00 33.41 3.07
80 81 2.867624 AGATGTTTGTCTGCCACACAT 58.132 42.857 0.00 0.00 44.98 3.21
81 82 2.346766 AGATGTTTGTCTGCCACACA 57.653 45.000 0.00 0.00 38.08 3.72
82 83 3.127548 CCATAGATGTTTGTCTGCCACAC 59.872 47.826 0.00 0.00 33.41 3.82
83 84 3.244875 ACCATAGATGTTTGTCTGCCACA 60.245 43.478 0.00 0.00 0.00 4.17
84 85 3.347216 ACCATAGATGTTTGTCTGCCAC 58.653 45.455 0.00 0.00 0.00 5.01
85 86 3.719268 ACCATAGATGTTTGTCTGCCA 57.281 42.857 0.00 0.00 0.00 4.92
86 87 4.513442 TGTACCATAGATGTTTGTCTGCC 58.487 43.478 0.00 0.00 0.00 4.85
87 88 5.063944 CACTGTACCATAGATGTTTGTCTGC 59.936 44.000 0.00 0.00 0.00 4.26
88 89 5.582269 CCACTGTACCATAGATGTTTGTCTG 59.418 44.000 0.00 0.00 0.00 3.51
89 90 5.248477 ACCACTGTACCATAGATGTTTGTCT 59.752 40.000 0.00 0.00 0.00 3.41
90 91 5.488341 ACCACTGTACCATAGATGTTTGTC 58.512 41.667 0.00 0.00 0.00 3.18
91 92 5.499004 ACCACTGTACCATAGATGTTTGT 57.501 39.130 0.00 0.00 0.00 2.83
92 93 5.391950 GCAACCACTGTACCATAGATGTTTG 60.392 44.000 0.00 0.00 0.00 2.93
93 94 4.700213 GCAACCACTGTACCATAGATGTTT 59.300 41.667 0.00 0.00 0.00 2.83
94 95 4.261801 GCAACCACTGTACCATAGATGTT 58.738 43.478 0.00 0.00 0.00 2.71
95 96 3.370527 GGCAACCACTGTACCATAGATGT 60.371 47.826 0.00 0.00 0.00 3.06
96 97 3.206150 GGCAACCACTGTACCATAGATG 58.794 50.000 0.00 0.00 0.00 2.90
97 98 2.158957 CGGCAACCACTGTACCATAGAT 60.159 50.000 0.00 0.00 0.00 1.98
98 99 1.206132 CGGCAACCACTGTACCATAGA 59.794 52.381 0.00 0.00 0.00 1.98
99 100 1.651987 CGGCAACCACTGTACCATAG 58.348 55.000 0.00 0.00 0.00 2.23
100 101 0.250793 CCGGCAACCACTGTACCATA 59.749 55.000 0.00 0.00 0.00 2.74
101 102 1.002624 CCGGCAACCACTGTACCAT 60.003 57.895 0.00 0.00 0.00 3.55
102 103 2.428187 CCGGCAACCACTGTACCA 59.572 61.111 0.00 0.00 0.00 3.25
103 104 3.053896 GCCGGCAACCACTGTACC 61.054 66.667 24.80 0.00 0.00 3.34
104 105 3.419759 CGCCGGCAACCACTGTAC 61.420 66.667 28.98 0.00 0.00 2.90
108 109 4.760047 CTAGCGCCGGCAACCACT 62.760 66.667 28.98 16.84 43.41 4.00
111 112 4.524318 TAGCTAGCGCCGGCAACC 62.524 66.667 28.98 14.13 43.41 3.77
112 113 2.510691 TTAGCTAGCGCCGGCAAC 60.511 61.111 28.98 18.38 43.41 4.17
113 114 2.202878 CTTAGCTAGCGCCGGCAA 60.203 61.111 28.98 10.28 43.41 4.52
114 115 4.221422 CCTTAGCTAGCGCCGGCA 62.221 66.667 28.98 5.90 43.41 5.69
115 116 4.971125 CCCTTAGCTAGCGCCGGC 62.971 72.222 19.07 19.07 36.60 6.13
116 117 4.301027 CCCCTTAGCTAGCGCCGG 62.301 72.222 9.55 10.41 36.60 6.13
117 118 3.537874 ACCCCTTAGCTAGCGCCG 61.538 66.667 9.55 0.00 36.60 6.46
118 119 2.109181 CACCCCTTAGCTAGCGCC 59.891 66.667 9.55 0.00 36.60 6.53
119 120 1.521681 CACACCCCTTAGCTAGCGC 60.522 63.158 9.55 0.00 0.00 5.92
120 121 1.144057 CCACACCCCTTAGCTAGCG 59.856 63.158 9.55 0.00 0.00 4.26
121 122 1.153147 GCCACACCCCTTAGCTAGC 60.153 63.158 6.62 6.62 0.00 3.42
122 123 1.271840 TGGCCACACCCCTTAGCTAG 61.272 60.000 0.00 0.00 37.83 3.42
123 124 0.623324 ATGGCCACACCCCTTAGCTA 60.623 55.000 8.16 0.00 37.83 3.32
124 125 1.930656 ATGGCCACACCCCTTAGCT 60.931 57.895 8.16 0.00 37.83 3.32
125 126 1.754234 CATGGCCACACCCCTTAGC 60.754 63.158 8.16 0.00 37.83 3.09
126 127 1.076777 CCATGGCCACACCCCTTAG 60.077 63.158 8.16 0.00 37.83 2.18
127 128 1.854979 ACCATGGCCACACCCCTTA 60.855 57.895 8.16 0.00 37.83 2.69
128 129 3.192630 ACCATGGCCACACCCCTT 61.193 61.111 8.16 0.00 37.83 3.95
129 130 3.983420 CACCATGGCCACACCCCT 61.983 66.667 8.16 0.00 37.83 4.79
131 132 4.992740 TGCACCATGGCCACACCC 62.993 66.667 8.16 0.00 37.83 4.61
132 133 2.681064 ATGCACCATGGCCACACC 60.681 61.111 8.16 0.00 39.84 4.16
133 134 1.534336 TTGATGCACCATGGCCACAC 61.534 55.000 8.16 8.13 0.00 3.82
134 135 0.615261 ATTGATGCACCATGGCCACA 60.615 50.000 8.16 8.13 0.00 4.17
135 136 0.538118 AATTGATGCACCATGGCCAC 59.462 50.000 8.16 1.42 0.00 5.01
136 137 1.207570 GAAATTGATGCACCATGGCCA 59.792 47.619 13.04 8.56 0.00 5.36
137 138 1.483415 AGAAATTGATGCACCATGGCC 59.517 47.619 13.04 3.53 0.00 5.36
138 139 2.973694 AGAAATTGATGCACCATGGC 57.026 45.000 13.04 0.00 0.00 4.40
139 140 7.654520 CCTTTTATAGAAATTGATGCACCATGG 59.345 37.037 11.19 11.19 0.00 3.66
140 141 8.199449 ACCTTTTATAGAAATTGATGCACCATG 58.801 33.333 0.00 0.00 0.00 3.66
141 142 8.310122 ACCTTTTATAGAAATTGATGCACCAT 57.690 30.769 0.00 0.00 0.00 3.55
142 143 7.615365 AGACCTTTTATAGAAATTGATGCACCA 59.385 33.333 0.00 0.00 0.00 4.17
143 144 8.000780 AGACCTTTTATAGAAATTGATGCACC 57.999 34.615 0.00 0.00 0.00 5.01
171 172 9.624373 GCATATGGTTCCTAATTCTATCATCAT 57.376 33.333 4.56 0.00 0.00 2.45
172 173 8.829746 AGCATATGGTTCCTAATTCTATCATCA 58.170 33.333 0.40 0.00 0.00 3.07
173 174 9.323985 GAGCATATGGTTCCTAATTCTATCATC 57.676 37.037 9.14 0.00 0.00 2.92
174 175 9.055689 AGAGCATATGGTTCCTAATTCTATCAT 57.944 33.333 9.14 0.00 0.00 2.45
175 176 8.441311 AGAGCATATGGTTCCTAATTCTATCA 57.559 34.615 9.14 0.00 0.00 2.15
176 177 9.377312 GAAGAGCATATGGTTCCTAATTCTATC 57.623 37.037 9.14 0.00 0.00 2.08
177 178 8.037758 CGAAGAGCATATGGTTCCTAATTCTAT 58.962 37.037 9.14 0.00 0.00 1.98
178 179 7.015292 ACGAAGAGCATATGGTTCCTAATTCTA 59.985 37.037 9.14 0.00 0.00 2.10
179 180 6.183361 ACGAAGAGCATATGGTTCCTAATTCT 60.183 38.462 9.14 0.00 0.00 2.40
180 181 5.992217 ACGAAGAGCATATGGTTCCTAATTC 59.008 40.000 9.14 6.41 0.00 2.17
181 182 5.930135 ACGAAGAGCATATGGTTCCTAATT 58.070 37.500 9.14 0.00 0.00 1.40
182 183 5.552870 ACGAAGAGCATATGGTTCCTAAT 57.447 39.130 9.14 0.00 0.00 1.73
183 184 6.266786 TCATACGAAGAGCATATGGTTCCTAA 59.733 38.462 9.14 0.00 0.00 2.69
184 185 5.773176 TCATACGAAGAGCATATGGTTCCTA 59.227 40.000 9.14 0.00 0.00 2.94
185 186 4.588951 TCATACGAAGAGCATATGGTTCCT 59.411 41.667 9.14 0.00 0.00 3.36
186 187 4.883083 TCATACGAAGAGCATATGGTTCC 58.117 43.478 9.14 0.00 0.00 3.62
187 188 5.533482 ACTCATACGAAGAGCATATGGTTC 58.467 41.667 9.14 2.74 36.58 3.62
188 189 5.537300 ACTCATACGAAGAGCATATGGTT 57.463 39.130 9.14 0.00 36.58 3.67
189 190 5.537300 AACTCATACGAAGAGCATATGGT 57.463 39.130 7.23 7.23 36.58 3.55
190 191 7.315890 TGATAACTCATACGAAGAGCATATGG 58.684 38.462 4.56 0.00 36.58 2.74
191 192 8.748380 TTGATAACTCATACGAAGAGCATATG 57.252 34.615 0.00 0.00 36.58 1.78
192 193 9.935241 ATTTGATAACTCATACGAAGAGCATAT 57.065 29.630 0.00 0.00 36.58 1.78
193 194 9.764363 AATTTGATAACTCATACGAAGAGCATA 57.236 29.630 0.00 0.00 36.58 3.14
194 195 8.668510 AATTTGATAACTCATACGAAGAGCAT 57.331 30.769 0.00 0.00 36.58 3.79
195 196 8.492673 AAATTTGATAACTCATACGAAGAGCA 57.507 30.769 0.00 0.00 36.58 4.26
196 197 9.774742 AAAAATTTGATAACTCATACGAAGAGC 57.225 29.630 0.00 0.00 36.58 4.09
263 264 8.893884 CGCACGTTTCAACTAAAATACATTTTA 58.106 29.630 6.89 6.89 40.24 1.52
264 265 7.432838 ACGCACGTTTCAACTAAAATACATTTT 59.567 29.630 5.35 5.35 42.21 1.82
265 266 6.913673 ACGCACGTTTCAACTAAAATACATTT 59.086 30.769 0.00 0.00 34.92 2.32
266 267 6.432107 ACGCACGTTTCAACTAAAATACATT 58.568 32.000 0.00 0.00 0.00 2.71
267 268 5.992729 ACGCACGTTTCAACTAAAATACAT 58.007 33.333 0.00 0.00 0.00 2.29
268 269 5.406767 ACGCACGTTTCAACTAAAATACA 57.593 34.783 0.00 0.00 0.00 2.29
269 270 5.385615 GCAACGCACGTTTCAACTAAAATAC 60.386 40.000 5.55 0.00 36.00 1.89
270 271 4.671516 GCAACGCACGTTTCAACTAAAATA 59.328 37.500 5.55 0.00 36.00 1.40
271 272 3.484285 GCAACGCACGTTTCAACTAAAAT 59.516 39.130 5.55 0.00 36.00 1.82
272 273 2.847133 GCAACGCACGTTTCAACTAAAA 59.153 40.909 5.55 0.00 36.00 1.52
273 274 2.159558 TGCAACGCACGTTTCAACTAAA 60.160 40.909 5.55 0.00 36.00 1.85
274 275 1.397343 TGCAACGCACGTTTCAACTAA 59.603 42.857 5.55 0.00 36.00 2.24
275 276 1.007580 TGCAACGCACGTTTCAACTA 58.992 45.000 5.55 0.00 36.00 2.24
276 277 1.797441 TGCAACGCACGTTTCAACT 59.203 47.368 5.55 0.00 36.00 3.16
277 278 4.368756 TGCAACGCACGTTTCAAC 57.631 50.000 5.55 0.00 36.00 3.18
289 290 4.387862 AACTAGTAAGTATGCACGTGCAAC 59.612 41.667 43.14 35.87 44.89 4.17
290 291 4.562082 AACTAGTAAGTATGCACGTGCAA 58.438 39.130 43.14 29.15 44.89 4.08
291 292 4.082408 AGAACTAGTAAGTATGCACGTGCA 60.082 41.667 41.97 41.97 45.47 4.57
292 293 4.421948 AGAACTAGTAAGTATGCACGTGC 58.578 43.478 33.11 33.11 36.84 5.34
293 294 6.090783 TGAAGAACTAGTAAGTATGCACGTG 58.909 40.000 12.28 12.28 33.75 4.49
294 295 6.072064 ACTGAAGAACTAGTAAGTATGCACGT 60.072 38.462 0.00 0.00 33.75 4.49
295 296 6.323266 ACTGAAGAACTAGTAAGTATGCACG 58.677 40.000 0.00 0.00 33.75 5.34
296 297 9.635520 TTTACTGAAGAACTAGTAAGTATGCAC 57.364 33.333 0.00 0.00 39.67 4.57
458 460 1.242076 CCTGCCTTCCTGTTCAACAG 58.758 55.000 10.91 10.91 45.53 3.16
571 733 0.398318 GTCACCAAGAGGCAGTCCTT 59.602 55.000 0.00 0.00 44.46 3.36
573 735 1.003233 GGTCACCAAGAGGCAGTCC 60.003 63.158 0.00 0.00 39.06 3.85
574 736 0.321122 CTGGTCACCAAGAGGCAGTC 60.321 60.000 0.00 0.00 39.06 3.51
575 737 0.764369 TCTGGTCACCAAGAGGCAGT 60.764 55.000 0.00 0.00 39.06 4.40
576 738 0.397941 TTCTGGTCACCAAGAGGCAG 59.602 55.000 0.00 0.00 39.06 4.85
577 739 0.397941 CTTCTGGTCACCAAGAGGCA 59.602 55.000 0.00 0.00 39.06 4.75
578 740 0.957888 GCTTCTGGTCACCAAGAGGC 60.958 60.000 12.45 12.45 39.06 4.70
579 741 0.322008 GGCTTCTGGTCACCAAGAGG 60.322 60.000 0.00 0.00 42.21 3.69
580 742 0.322008 GGGCTTCTGGTCACCAAGAG 60.322 60.000 0.00 0.00 30.80 2.85
581 743 1.761174 GGGCTTCTGGTCACCAAGA 59.239 57.895 0.00 0.00 30.80 3.02
582 744 1.672356 CGGGCTTCTGGTCACCAAG 60.672 63.158 0.00 0.00 30.80 3.61
583 745 2.429930 CGGGCTTCTGGTCACCAA 59.570 61.111 0.00 0.00 30.80 3.67
584 746 3.636231 CCGGGCTTCTGGTCACCA 61.636 66.667 0.00 0.00 32.23 4.17
585 747 4.410400 CCCGGGCTTCTGGTCACC 62.410 72.222 8.08 0.00 35.10 4.02
591 753 3.854669 ATCTCGCCCGGGCTTCTG 61.855 66.667 41.01 26.57 39.32 3.02
592 754 3.854669 CATCTCGCCCGGGCTTCT 61.855 66.667 41.01 21.19 39.32 2.85
593 755 4.918201 CCATCTCGCCCGGGCTTC 62.918 72.222 41.01 15.58 39.32 3.86
814 1010 3.710722 CAGCTGGCCGGGAAGACT 61.711 66.667 15.02 0.00 0.00 3.24
975 1175 1.539124 AGTGGAGGTCTGGGGGAAC 60.539 63.158 0.00 0.00 0.00 3.62
980 1180 3.721706 GGGCAGTGGAGGTCTGGG 61.722 72.222 0.00 0.00 33.98 4.45
984 1184 2.592308 GATGGGGCAGTGGAGGTC 59.408 66.667 0.00 0.00 0.00 3.85
986 1186 4.864334 GCGATGGGGCAGTGGAGG 62.864 72.222 0.00 0.00 0.00 4.30
1003 1203 2.108976 ACATAGACGCCGGCATGG 59.891 61.111 28.98 13.29 42.50 3.66
1056 1256 4.554363 CCGATCGAGCTCGCGGTT 62.554 66.667 33.49 19.45 39.17 4.44
1092 1292 2.283676 AACTCTCCCCTTCGCGGA 60.284 61.111 6.13 0.00 33.16 5.54
1274 1488 2.980233 GCCTTGGCTGTTGCGAGT 60.980 61.111 4.11 0.00 40.82 4.18
1314 1528 3.790437 AGCCGCTCCCATGTCCAG 61.790 66.667 0.00 0.00 0.00 3.86
1494 1859 3.139029 CCGAACTGGGTAGCTTCAC 57.861 57.895 0.00 0.00 0.00 3.18
1591 1956 3.121030 CTGGCGTGCCCTTCTTCG 61.121 66.667 8.69 0.00 34.56 3.79
1697 2062 1.442769 ACAGCACTTCAATGTAGCCG 58.557 50.000 0.00 0.00 0.00 5.52
1807 2186 2.915659 ACGACCGCCTTGTCCTCA 60.916 61.111 0.00 0.00 31.35 3.86
1808 2187 2.126031 GACGACCGCCTTGTCCTC 60.126 66.667 0.00 0.00 31.35 3.71
1809 2188 2.035237 TTTGACGACCGCCTTGTCCT 62.035 55.000 0.00 0.00 32.64 3.85
1810 2189 0.953960 ATTTGACGACCGCCTTGTCC 60.954 55.000 0.00 0.00 32.64 4.02
1811 2190 0.442699 GATTTGACGACCGCCTTGTC 59.557 55.000 0.00 0.00 34.12 3.18
1812 2191 0.034896 AGATTTGACGACCGCCTTGT 59.965 50.000 0.00 0.00 0.00 3.16
1813 2192 0.721718 GAGATTTGACGACCGCCTTG 59.278 55.000 0.00 0.00 0.00 3.61
1814 2193 0.391263 GGAGATTTGACGACCGCCTT 60.391 55.000 0.00 0.00 0.00 4.35
1815 2194 1.218316 GGAGATTTGACGACCGCCT 59.782 57.895 0.00 0.00 0.00 5.52
1824 2210 3.096852 TCTTCAGTAGCGGGAGATTTGA 58.903 45.455 0.00 0.00 0.00 2.69
1828 2214 1.410882 GCTTCTTCAGTAGCGGGAGAT 59.589 52.381 0.00 0.00 0.00 2.75
1916 2348 1.762370 ACCCAAAAACTTGCAAGGAGG 59.238 47.619 29.18 20.60 0.00 4.30
1919 2351 2.977772 TGACCCAAAAACTTGCAAGG 57.022 45.000 29.18 13.74 0.00 3.61
1943 2375 1.095228 ACACAAACCTGTCAGTGCCG 61.095 55.000 0.00 0.00 35.47 5.69
1992 2434 4.212847 CCCGAGATTTACATTCAGATGCTG 59.787 45.833 0.00 0.00 36.72 4.41
2108 2611 1.200020 ACATGCTTGCCGCTTAGTTTC 59.800 47.619 0.00 0.00 40.11 2.78
2312 4479 4.517453 ACGAAGGTAACAAAATAGCAGCAA 59.483 37.500 0.00 0.00 41.41 3.91
2576 4755 1.874019 CTCGTCGTCCTTCATGGCG 60.874 63.158 0.00 0.00 40.75 5.69
2587 4766 4.086178 CGCGTGGACTCTCGTCGT 62.086 66.667 0.00 0.00 41.16 4.34
2590 4769 3.735029 GGACGCGTGGACTCTCGT 61.735 66.667 20.70 0.00 37.92 4.18
2671 4859 3.450115 CAGACCCCGAGGACGACC 61.450 72.222 0.00 0.00 42.66 4.79
2687 4876 1.216444 GACGCTCATCTGCCTCACA 59.784 57.895 0.00 0.00 0.00 3.58
2731 4921 3.665675 AACGCCCTCTGGATCACGC 62.666 63.158 0.00 0.00 0.00 5.34
2736 4926 0.620556 AACATGAACGCCCTCTGGAT 59.379 50.000 0.00 0.00 0.00 3.41
2965 5195 2.881352 GAGTAGTGCGCGAGTGGC 60.881 66.667 12.10 0.00 38.69 5.01
3002 5232 5.843019 ATTAGAGTCCCAAACAAGAGGAA 57.157 39.130 0.00 0.00 0.00 3.36
3003 5233 5.514834 CCAATTAGAGTCCCAAACAAGAGGA 60.515 44.000 0.00 0.00 0.00 3.71
3004 5234 4.702131 CCAATTAGAGTCCCAAACAAGAGG 59.298 45.833 0.00 0.00 0.00 3.69
3005 5235 4.156739 GCCAATTAGAGTCCCAAACAAGAG 59.843 45.833 0.00 0.00 0.00 2.85
3006 5236 4.079253 GCCAATTAGAGTCCCAAACAAGA 58.921 43.478 0.00 0.00 0.00 3.02
3007 5237 3.826157 TGCCAATTAGAGTCCCAAACAAG 59.174 43.478 0.00 0.00 0.00 3.16
3008 5238 3.838565 TGCCAATTAGAGTCCCAAACAA 58.161 40.909 0.00 0.00 0.00 2.83
3009 5239 3.517296 TGCCAATTAGAGTCCCAAACA 57.483 42.857 0.00 0.00 0.00 2.83
3010 5240 4.016444 TCATGCCAATTAGAGTCCCAAAC 58.984 43.478 0.00 0.00 0.00 2.93
3011 5241 4.314522 TCATGCCAATTAGAGTCCCAAA 57.685 40.909 0.00 0.00 0.00 3.28
3012 5242 4.314522 TTCATGCCAATTAGAGTCCCAA 57.685 40.909 0.00 0.00 0.00 4.12
3013 5243 4.016444 GTTTCATGCCAATTAGAGTCCCA 58.984 43.478 0.00 0.00 0.00 4.37
3014 5244 4.273318 AGTTTCATGCCAATTAGAGTCCC 58.727 43.478 0.00 0.00 0.00 4.46
3015 5245 6.183360 GGTTAGTTTCATGCCAATTAGAGTCC 60.183 42.308 0.00 0.00 0.00 3.85
3016 5246 6.183360 GGGTTAGTTTCATGCCAATTAGAGTC 60.183 42.308 0.00 0.00 0.00 3.36
3017 5247 5.652452 GGGTTAGTTTCATGCCAATTAGAGT 59.348 40.000 0.00 0.00 0.00 3.24
3018 5248 5.220854 CGGGTTAGTTTCATGCCAATTAGAG 60.221 44.000 0.00 0.00 0.00 2.43
3019 5249 4.638421 CGGGTTAGTTTCATGCCAATTAGA 59.362 41.667 0.00 0.00 0.00 2.10
3020 5250 4.202010 CCGGGTTAGTTTCATGCCAATTAG 60.202 45.833 0.00 0.00 0.00 1.73
3021 5251 3.697045 CCGGGTTAGTTTCATGCCAATTA 59.303 43.478 0.00 0.00 0.00 1.40
3022 5252 2.495669 CCGGGTTAGTTTCATGCCAATT 59.504 45.455 0.00 0.00 0.00 2.32
3023 5253 2.099405 CCGGGTTAGTTTCATGCCAAT 58.901 47.619 0.00 0.00 0.00 3.16
3024 5254 1.074084 TCCGGGTTAGTTTCATGCCAA 59.926 47.619 0.00 0.00 0.00 4.52
3025 5255 0.693622 TCCGGGTTAGTTTCATGCCA 59.306 50.000 0.00 0.00 0.00 4.92
3026 5256 1.092348 GTCCGGGTTAGTTTCATGCC 58.908 55.000 0.00 0.00 0.00 4.40
3027 5257 1.737793 CAGTCCGGGTTAGTTTCATGC 59.262 52.381 0.00 0.00 0.00 4.06
3028 5258 3.000727 GTCAGTCCGGGTTAGTTTCATG 58.999 50.000 0.00 0.00 0.00 3.07
3029 5259 2.353406 CGTCAGTCCGGGTTAGTTTCAT 60.353 50.000 0.00 0.00 0.00 2.57
3030 5260 1.000060 CGTCAGTCCGGGTTAGTTTCA 60.000 52.381 0.00 0.00 0.00 2.69
3031 5261 1.000171 ACGTCAGTCCGGGTTAGTTTC 60.000 52.381 0.00 0.00 0.00 2.78
3032 5262 1.043022 ACGTCAGTCCGGGTTAGTTT 58.957 50.000 0.00 0.00 0.00 2.66
3033 5263 1.043022 AACGTCAGTCCGGGTTAGTT 58.957 50.000 0.00 0.00 0.00 2.24
3034 5264 0.316204 CAACGTCAGTCCGGGTTAGT 59.684 55.000 0.00 0.00 0.00 2.24
3035 5265 0.316204 ACAACGTCAGTCCGGGTTAG 59.684 55.000 0.00 0.00 0.00 2.34
3036 5266 0.752054 AACAACGTCAGTCCGGGTTA 59.248 50.000 0.00 0.00 30.98 2.85
3037 5267 0.107557 AAACAACGTCAGTCCGGGTT 60.108 50.000 0.00 0.00 33.07 4.11
3038 5268 0.107557 AAAACAACGTCAGTCCGGGT 60.108 50.000 0.00 0.00 0.00 5.28
3039 5269 0.584876 GAAAACAACGTCAGTCCGGG 59.415 55.000 0.00 0.00 0.00 5.73
3040 5270 1.260561 CTGAAAACAACGTCAGTCCGG 59.739 52.381 0.00 0.00 37.16 5.14
3041 5271 1.332904 GCTGAAAACAACGTCAGTCCG 60.333 52.381 0.00 0.00 42.72 4.79
3042 5272 1.668751 TGCTGAAAACAACGTCAGTCC 59.331 47.619 0.00 0.00 42.72 3.85
3043 5273 2.974165 CTGCTGAAAACAACGTCAGTC 58.026 47.619 0.00 0.00 42.72 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.