Multiple sequence alignment - TraesCS1D01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G093800 chr1D 100.000 8913 0 0 1 8913 79360220 79351308 0.000000e+00 16460
1 TraesCS1D01G093800 chr1D 91.057 123 11 0 10 132 277023632 277023510 5.540000e-37 167
2 TraesCS1D01G093800 chr1B 96.198 5760 115 27 2510 8208 130539710 130533994 0.000000e+00 9328
3 TraesCS1D01G093800 chr1B 95.290 1847 57 13 700 2526 130541579 130539743 0.000000e+00 2902
4 TraesCS1D01G093800 chr1B 94.737 114 5 1 8280 8392 130533720 130533607 9.200000e-40 176
5 TraesCS1D01G093800 chr1B 80.275 218 22 15 498 713 130541827 130541629 2.590000e-30 145
6 TraesCS1D01G093800 chr1A 94.439 3219 118 29 541 3747 98237837 98234668 0.000000e+00 4896
7 TraesCS1D01G093800 chr1A 95.908 2297 72 14 3740 6019 98232963 98230672 0.000000e+00 3701
8 TraesCS1D01G093800 chr1A 93.270 2422 99 22 5989 8397 98230518 98228148 0.000000e+00 3511
9 TraesCS1D01G093800 chr1A 89.876 484 48 1 10 492 98238549 98238066 9.830000e-174 621
10 TraesCS1D01G093800 chr1A 91.200 125 11 0 7 131 434611125 434611249 4.280000e-38 171
11 TraesCS1D01G093800 chr6A 90.976 543 23 5 8393 8913 123452886 123452348 0.000000e+00 708
12 TraesCS1D01G093800 chr2A 90.000 540 28 4 8398 8913 384883520 384884057 0.000000e+00 675
13 TraesCS1D01G093800 chr2A 88.930 542 26 11 8398 8913 83579217 83578684 9.760000e-179 638
14 TraesCS1D01G093800 chr2A 90.551 127 12 0 7 133 257816599 257816725 1.540000e-37 169
15 TraesCS1D01G093800 chr6D 89.777 538 32 7 8398 8913 193243911 193244447 0.000000e+00 667
16 TraesCS1D01G093800 chr5D 89.687 543 28 10 8398 8913 219763646 219764187 0.000000e+00 667
17 TraesCS1D01G093800 chr5D 89.405 538 33 3 8398 8913 514484575 514484040 0.000000e+00 656
18 TraesCS1D01G093800 chr5D 88.950 543 32 10 8397 8913 539985989 539986529 0.000000e+00 645
19 TraesCS1D01G093800 chr4D 90.267 524 28 6 8412 8913 85172175 85171653 0.000000e+00 664
20 TraesCS1D01G093800 chr4D 88.683 539 35 10 8398 8913 56735322 56735857 1.260000e-177 634
21 TraesCS1D01G093800 chr3D 89.405 538 33 9 8398 8913 433536590 433536055 0.000000e+00 656
22 TraesCS1D01G093800 chr3D 89.162 489 30 8 8447 8913 24899946 24899459 9.970000e-164 588
23 TraesCS1D01G093800 chr3D 91.200 125 11 0 7 131 96647952 96648076 4.280000e-38 171
24 TraesCS1D01G093800 chrUn 89.033 538 35 8 8398 8913 96284915 96284380 0.000000e+00 645
25 TraesCS1D01G093800 chrUn 89.103 156 17 0 1943 2098 339377874 339378029 2.540000e-45 195
26 TraesCS1D01G093800 chr7A 88.355 541 36 12 8397 8913 307123846 307123309 7.600000e-175 625
27 TraesCS1D01G093800 chr7A 87.918 538 39 6 8398 8913 731752617 731753150 2.130000e-170 610
28 TraesCS1D01G093800 chr7A 85.762 302 18 3 8392 8669 736127785 736128085 6.770000e-76 296
29 TraesCS1D01G093800 chr7A 90.260 154 12 2 1946 2097 679957170 679957018 1.960000e-46 198
30 TraesCS1D01G093800 chr7D 87.890 545 33 12 8398 8913 179991440 179990900 2.130000e-170 610
31 TraesCS1D01G093800 chr7D 90.260 154 12 2 1946 2097 588081929 588081777 1.960000e-46 198
32 TraesCS1D01G093800 chr7D 88.024 167 14 5 1936 2099 611253740 611253577 9.130000e-45 193
33 TraesCS1D01G093800 chr6B 94.721 341 17 1 8573 8913 204460772 204460433 6.130000e-146 529
34 TraesCS1D01G093800 chr6B 90.385 156 12 2 1946 2099 233039377 233039223 1.520000e-47 202
35 TraesCS1D01G093800 chr7B 88.344 326 15 6 8394 8696 644233792 644234117 3.930000e-98 370
36 TraesCS1D01G093800 chr7B 90.566 159 10 4 1944 2099 700413932 700413776 1.170000e-48 206
37 TraesCS1D01G093800 chr2D 89.677 155 14 1 1945 2097 512769190 512769344 7.060000e-46 196
38 TraesCS1D01G093800 chr2B 92.562 121 9 0 11 131 664450458 664450338 3.310000e-39 174
39 TraesCS1D01G093800 chr5B 91.200 125 11 0 7 131 227716002 227716126 4.280000e-38 171
40 TraesCS1D01G093800 chr5A 91.200 125 11 0 7 131 155323421 155323545 4.280000e-38 171
41 TraesCS1D01G093800 chr3A 91.870 123 8 2 10 131 324335413 324335292 4.280000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G093800 chr1D 79351308 79360220 8912 True 16460.00 16460 100.00000 1 8913 1 chr1D.!!$R1 8912
1 TraesCS1D01G093800 chr1B 130533607 130541827 8220 True 3137.75 9328 91.62500 498 8392 4 chr1B.!!$R1 7894
2 TraesCS1D01G093800 chr1A 98228148 98238549 10401 True 3182.25 4896 93.37325 10 8397 4 chr1A.!!$R1 8387
3 TraesCS1D01G093800 chr6A 123452348 123452886 538 True 708.00 708 90.97600 8393 8913 1 chr6A.!!$R1 520
4 TraesCS1D01G093800 chr2A 384883520 384884057 537 False 675.00 675 90.00000 8398 8913 1 chr2A.!!$F2 515
5 TraesCS1D01G093800 chr2A 83578684 83579217 533 True 638.00 638 88.93000 8398 8913 1 chr2A.!!$R1 515
6 TraesCS1D01G093800 chr6D 193243911 193244447 536 False 667.00 667 89.77700 8398 8913 1 chr6D.!!$F1 515
7 TraesCS1D01G093800 chr5D 219763646 219764187 541 False 667.00 667 89.68700 8398 8913 1 chr5D.!!$F1 515
8 TraesCS1D01G093800 chr5D 514484040 514484575 535 True 656.00 656 89.40500 8398 8913 1 chr5D.!!$R1 515
9 TraesCS1D01G093800 chr5D 539985989 539986529 540 False 645.00 645 88.95000 8397 8913 1 chr5D.!!$F2 516
10 TraesCS1D01G093800 chr4D 85171653 85172175 522 True 664.00 664 90.26700 8412 8913 1 chr4D.!!$R1 501
11 TraesCS1D01G093800 chr4D 56735322 56735857 535 False 634.00 634 88.68300 8398 8913 1 chr4D.!!$F1 515
12 TraesCS1D01G093800 chr3D 433536055 433536590 535 True 656.00 656 89.40500 8398 8913 1 chr3D.!!$R2 515
13 TraesCS1D01G093800 chrUn 96284380 96284915 535 True 645.00 645 89.03300 8398 8913 1 chrUn.!!$R1 515
14 TraesCS1D01G093800 chr7A 307123309 307123846 537 True 625.00 625 88.35500 8397 8913 1 chr7A.!!$R1 516
15 TraesCS1D01G093800 chr7A 731752617 731753150 533 False 610.00 610 87.91800 8398 8913 1 chr7A.!!$F1 515
16 TraesCS1D01G093800 chr7D 179990900 179991440 540 True 610.00 610 87.89000 8398 8913 1 chr7D.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.165944 CCGAGCACGCTTAACTTTGG 59.834 55.000 0.00 0.00 38.29 3.28 F
375 377 0.672401 CGGTTCCGCTGGTACAACAT 60.672 55.000 0.00 0.00 38.70 2.71 F
1780 2045 0.602060 TGTACACCGCATGTTCCGTA 59.398 50.000 0.00 0.00 43.19 4.02 F
1782 2047 0.602060 TACACCGCATGTTCCGTACA 59.398 50.000 0.00 0.00 43.19 2.90 F
1959 2224 3.635373 TGTGTGAACTACTCTCTCCGTTT 59.365 43.478 0.00 0.00 0.00 3.60 F
3301 3631 3.938963 CGTTGAGCCACTACCAAATATGT 59.061 43.478 0.00 0.00 0.00 2.29 F
3876 5919 0.397957 TATGGGAGGTCCGCTTGCTA 60.398 55.000 0.00 0.00 38.76 3.49 F
3967 6010 0.539986 GGTCTATTGGAGGCAACCGA 59.460 55.000 0.00 0.00 37.17 4.69 F
5239 7296 3.129462 GGGCAAAAAGCTAGAGATGGAAC 59.871 47.826 0.00 0.00 44.79 3.62 F
5399 7456 3.830121 AGATGAAGGCCAGATTTCCATC 58.170 45.455 5.01 6.69 0.00 3.51 F
6879 9153 0.678048 CTTCCTAGCCAACTGTGCCC 60.678 60.000 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 2027 0.994263 GTACGGAACATGCGGTGTAC 59.006 55.000 0.00 0.0 41.14 2.90 R
1922 2187 4.182693 TCACACATAAACTGTACCCTCG 57.817 45.455 0.00 0.0 35.91 4.63 R
3405 3735 1.251251 ACCAGCAGCCTGAAATTCAC 58.749 50.000 0.00 0.0 41.77 3.18 R
3749 5792 3.193479 CCCCATTTGGTAGAAGCAAGTTC 59.807 47.826 0.00 0.0 36.89 3.01 R
3876 5919 1.221840 CAGTCTAACATGGCCCGCT 59.778 57.895 0.00 0.0 0.00 5.52 R
4777 6822 4.218852 CCTTATTTTTAACCAGCACCCGAA 59.781 41.667 0.00 0.0 0.00 4.30 R
5304 7361 5.420725 TGTATCAACAGCTTCATGGTAGT 57.579 39.130 0.00 0.0 0.00 2.73 R
6021 8266 3.738982 CCACACCAACACTATGAGACAA 58.261 45.455 0.00 0.0 0.00 3.18 R
6879 9153 2.266554 GTTCAGAAGGACAGATGAGCG 58.733 52.381 0.00 0.0 0.00 5.03 R
7241 9515 2.779755 TGACACATAGCGGGACAAAT 57.220 45.000 0.00 0.0 0.00 2.32 R
8297 10787 0.031994 ATTTCCCAACAGTTGCACGC 59.968 50.000 7.88 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.036852 GGTATACTGAAATTGCTCCAAGCC 59.963 45.833 2.25 0.00 41.51 4.35
43 44 0.452784 GCCGAGCACGCTTAACTTTG 60.453 55.000 0.00 0.00 38.29 2.77
44 45 0.165944 CCGAGCACGCTTAACTTTGG 59.834 55.000 0.00 0.00 38.29 3.28
46 47 1.126846 CGAGCACGCTTAACTTTGGAG 59.873 52.381 0.00 0.00 0.00 3.86
55 56 5.355910 ACGCTTAACTTTGGAGTTCTTTTCA 59.644 36.000 0.00 0.00 44.75 2.69
64 65 3.966665 TGGAGTTCTTTTCAAATGGGCTT 59.033 39.130 0.00 0.00 0.00 4.35
67 68 3.005791 AGTTCTTTTCAAATGGGCTTCCG 59.994 43.478 0.00 0.00 0.00 4.30
68 69 1.892474 TCTTTTCAAATGGGCTTCCGG 59.108 47.619 0.00 0.00 0.00 5.14
118 119 6.265649 TGAGTAGTCTGTCATCCCTATTAAGC 59.734 42.308 0.00 0.00 0.00 3.09
121 122 4.721776 AGTCTGTCATCCCTATTAAGCCAA 59.278 41.667 0.00 0.00 0.00 4.52
125 126 5.437060 TGTCATCCCTATTAAGCCAAACTC 58.563 41.667 0.00 0.00 0.00 3.01
146 147 1.591594 ACACTGTTGGAGCGTGTCG 60.592 57.895 0.00 0.00 37.30 4.35
149 150 4.228567 TGTTGGAGCGTGTCGGCA 62.229 61.111 0.00 0.00 34.64 5.69
157 158 2.430921 CGTGTCGGCAGTGAGGTC 60.431 66.667 0.00 0.00 0.00 3.85
170 172 1.920835 GAGGTCAGGGCCAACTCCT 60.921 63.158 6.18 7.84 34.39 3.69
194 196 2.499289 CCAAGTGTCATCTCCTAGTGCT 59.501 50.000 0.00 0.00 0.00 4.40
198 200 2.113807 TGTCATCTCCTAGTGCTGCAT 58.886 47.619 5.27 0.00 0.00 3.96
202 204 5.163269 TGTCATCTCCTAGTGCTGCATAAAT 60.163 40.000 5.27 0.00 0.00 1.40
204 206 5.070847 TCATCTCCTAGTGCTGCATAAATCA 59.929 40.000 5.27 0.00 0.00 2.57
252 254 1.202463 CCTTCTCATAGACCAGCGGTG 60.202 57.143 7.86 7.86 35.25 4.94
275 277 2.529632 AGCTCTTCAATTTGGAACCCC 58.470 47.619 0.00 0.00 0.00 4.95
285 287 4.097361 GGAACCCCTCGAGCCACC 62.097 72.222 6.99 1.90 0.00 4.61
294 296 3.917760 CGAGCCACCGATCCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
296 298 2.765807 AGCCACCGATCCTCCCAG 60.766 66.667 0.00 0.00 0.00 4.45
316 318 2.590575 CAAGGTGTCGTGGCCGTT 60.591 61.111 0.00 0.00 35.01 4.44
356 358 1.608283 GCTACCCGGAATAGTGCCATC 60.608 57.143 0.73 0.00 0.00 3.51
358 360 1.301716 CCCGGAATAGTGCCATCGG 60.302 63.158 0.73 0.00 37.50 4.18
362 364 1.594331 GGAATAGTGCCATCGGTTCC 58.406 55.000 0.00 0.00 0.00 3.62
365 367 1.686325 ATAGTGCCATCGGTTCCGCT 61.686 55.000 6.35 0.00 0.00 5.52
375 377 0.672401 CGGTTCCGCTGGTACAACAT 60.672 55.000 0.00 0.00 38.70 2.71
379 381 2.812011 GTTCCGCTGGTACAACATTCTT 59.188 45.455 0.00 0.00 38.70 2.52
386 388 5.618561 GCTGGTACAACATTCTTAAACTCG 58.381 41.667 0.00 0.00 38.70 4.18
413 415 1.134670 GGCCTAGAATTGTCAGCTCGT 60.135 52.381 0.00 0.00 0.00 4.18
414 416 2.622436 GCCTAGAATTGTCAGCTCGTT 58.378 47.619 0.00 0.00 0.00 3.85
429 431 2.040544 CGTTGTAGCCAAGGCCAGG 61.041 63.158 5.01 7.88 43.17 4.45
438 440 4.284550 AAGGCCAGGGCGCTTTGA 62.285 61.111 7.64 0.00 43.06 2.69
465 467 1.811679 GGTGAGCTAGCGCAGGTTC 60.812 63.158 22.18 9.72 40.68 3.62
466 468 2.161486 GTGAGCTAGCGCAGGTTCG 61.161 63.158 22.18 0.00 40.68 3.95
481 483 1.406477 GGTTCGGTATCCCAAGTCCAC 60.406 57.143 0.00 0.00 0.00 4.02
492 494 1.151450 AAGTCCACCTGCCCACTTG 59.849 57.895 0.00 0.00 0.00 3.16
494 496 2.449518 TCCACCTGCCCACTTGGA 60.450 61.111 0.00 0.00 37.39 3.53
495 497 1.852157 TCCACCTGCCCACTTGGAT 60.852 57.895 0.00 0.00 37.39 3.41
497 499 1.746615 CACCTGCCCACTTGGATCG 60.747 63.158 0.00 0.00 37.39 3.69
498 500 2.825836 CCTGCCCACTTGGATCGC 60.826 66.667 0.00 0.00 37.39 4.58
499 501 2.046023 CTGCCCACTTGGATCGCA 60.046 61.111 0.00 0.00 37.39 5.10
500 502 2.359850 TGCCCACTTGGATCGCAC 60.360 61.111 0.00 0.00 37.39 5.34
502 504 2.401766 GCCCACTTGGATCGCACAG 61.402 63.158 0.00 0.00 37.39 3.66
503 505 1.296392 CCCACTTGGATCGCACAGA 59.704 57.895 0.00 0.00 37.39 3.41
504 506 0.742281 CCCACTTGGATCGCACAGAG 60.742 60.000 0.00 0.00 37.39 3.35
517 519 1.901591 CACAGAGCACCAACAGGATT 58.098 50.000 0.00 0.00 0.00 3.01
518 520 1.538512 CACAGAGCACCAACAGGATTG 59.461 52.381 0.00 0.00 0.00 2.67
526 528 3.581755 CACCAACAGGATTGCAATCAAG 58.418 45.455 34.08 27.48 37.15 3.02
528 530 2.028839 CCAACAGGATTGCAATCAAGCA 60.029 45.455 34.08 0.00 40.17 3.91
530 532 4.250464 CAACAGGATTGCAATCAAGCATT 58.750 39.130 34.08 19.94 45.19 3.56
1444 1709 0.829990 TGCTAATGTGCGATCCTCCA 59.170 50.000 0.00 0.00 35.36 3.86
1710 1975 0.672401 GCGGAACAGGTTCGGAATCA 60.672 55.000 19.81 0.00 40.86 2.57
1762 2027 3.002791 AGGTCAGTATTGTCACGCATTG 58.997 45.455 0.00 0.00 0.00 2.82
1769 2034 0.862490 TTGTCACGCATTGTACACCG 59.138 50.000 0.00 1.34 0.00 4.94
1780 2045 0.602060 TGTACACCGCATGTTCCGTA 59.398 50.000 0.00 0.00 43.19 4.02
1781 2046 0.994263 GTACACCGCATGTTCCGTAC 59.006 55.000 0.00 0.00 43.19 3.67
1782 2047 0.602060 TACACCGCATGTTCCGTACA 59.398 50.000 0.00 0.00 43.19 2.90
1792 2057 6.133392 CGCATGTTCCGTACAATTTATAAGG 58.867 40.000 0.00 0.00 40.89 2.69
1959 2224 3.635373 TGTGTGAACTACTCTCTCCGTTT 59.365 43.478 0.00 0.00 0.00 3.60
1961 2226 4.023021 GTGTGAACTACTCTCTCCGTTTCT 60.023 45.833 0.00 0.00 0.00 2.52
1994 2259 7.510630 AGATGTTCTAACGTTTTTCTGAATCG 58.489 34.615 5.91 0.20 0.00 3.34
2346 2613 9.912634 ACTTTTGTGTGAAATAATAATGACTGG 57.087 29.630 0.00 0.00 0.00 4.00
2552 2868 4.672587 TCCTTCACCTTAGGATCGATTG 57.327 45.455 4.77 0.00 36.88 2.67
2907 3223 5.700832 GCTGGTGCTACAACTGCATAATATA 59.299 40.000 9.29 0.00 43.73 0.86
2911 3227 8.783093 TGGTGCTACAACTGCATAATATATTTC 58.217 33.333 2.68 0.00 42.69 2.17
3044 3360 9.383519 CTTTATCTTTTACATAGCAACTCAGGA 57.616 33.333 0.00 0.00 0.00 3.86
3045 3361 9.733556 TTTATCTTTTACATAGCAACTCAGGAA 57.266 29.630 0.00 0.00 0.00 3.36
3301 3631 3.938963 CGTTGAGCCACTACCAAATATGT 59.061 43.478 0.00 0.00 0.00 2.29
3305 3635 7.201696 CGTTGAGCCACTACCAAATATGTAAAT 60.202 37.037 0.00 0.00 0.00 1.40
3366 3696 7.067251 TGCATGAATATGTCTGCATTCACTTTA 59.933 33.333 0.00 0.00 42.33 1.85
3405 3735 7.468922 TTTGTGCTAATCGATCTTCACTATG 57.531 36.000 18.34 0.00 0.00 2.23
3713 4044 5.215252 TGAGTTCTTCTTTTCGATGGTCT 57.785 39.130 0.00 0.00 0.00 3.85
3778 5821 6.201591 TGCTTCTACCAAATGGGGAAATATT 58.798 36.000 4.17 0.00 42.91 1.28
3876 5919 0.397957 TATGGGAGGTCCGCTTGCTA 60.398 55.000 0.00 0.00 38.76 3.49
3967 6010 0.539986 GGTCTATTGGAGGCAACCGA 59.460 55.000 0.00 0.00 37.17 4.69
4777 6822 6.909550 TGTTAGCATTGACAAATTAAGGGT 57.090 33.333 0.00 0.00 0.00 4.34
4810 6855 5.953548 TGGTTAAAAATAAGGGCTAAGGGAC 59.046 40.000 0.00 0.00 0.00 4.46
4820 6865 3.587506 AGGGCTAAGGGACGCATTATTAT 59.412 43.478 0.00 0.00 0.00 1.28
5081 7131 5.916883 CCACAACTGAGCAGTCAATTTTTAG 59.083 40.000 3.27 0.00 41.58 1.85
5239 7296 3.129462 GGGCAAAAAGCTAGAGATGGAAC 59.871 47.826 0.00 0.00 44.79 3.62
5336 7393 3.937706 AGCTGTTGATACAAGCATCTCAC 59.062 43.478 0.00 0.00 33.57 3.51
5399 7456 3.830121 AGATGAAGGCCAGATTTCCATC 58.170 45.455 5.01 6.69 0.00 3.51
5894 7955 4.537135 AGGACTTCGTGAATTAGCTTCA 57.463 40.909 0.00 0.00 41.61 3.02
6198 8443 6.363577 TGATGAAAATAGAAAGTGGATCGC 57.636 37.500 0.00 0.00 0.00 4.58
6263 8508 6.551736 ACAAGTTTGTGTCATTGTGAAGTAC 58.448 36.000 0.00 0.00 40.49 2.73
6264 8509 6.374333 ACAAGTTTGTGTCATTGTGAAGTACT 59.626 34.615 0.00 0.00 40.49 2.73
6265 8510 7.551262 ACAAGTTTGTGTCATTGTGAAGTACTA 59.449 33.333 0.00 0.00 40.49 1.82
6307 8552 5.400485 GTGTCACTGAATTTGCTTTCACATC 59.600 40.000 0.00 0.00 32.39 3.06
6586 8831 8.286097 GTCATAAGAGTTCCAAAAAGACTTGAG 58.714 37.037 0.00 0.00 0.00 3.02
6879 9153 0.678048 CTTCCTAGCCAACTGTGCCC 60.678 60.000 0.00 0.00 0.00 5.36
6973 9247 7.340487 CCCTTTTTATGATGAGTAAGCTTCCTT 59.660 37.037 0.00 0.00 35.05 3.36
7003 9277 4.762251 GTCCAGTTTTTCCTGCTGATAGTT 59.238 41.667 0.00 0.00 32.39 2.24
7138 9412 6.598064 GGCTTGCTATTTGTCCTAGAGTTAAA 59.402 38.462 0.00 0.00 0.00 1.52
7232 9506 7.063426 CGAGACAATTCTCTGCAAATTAGTACA 59.937 37.037 0.00 0.00 45.61 2.90
7233 9507 8.261492 AGACAATTCTCTGCAAATTAGTACAG 57.739 34.615 0.00 0.00 0.00 2.74
7235 9509 9.151471 GACAATTCTCTGCAAATTAGTACAGTA 57.849 33.333 0.00 0.00 0.00 2.74
7236 9510 9.672673 ACAATTCTCTGCAAATTAGTACAGTAT 57.327 29.630 0.00 0.00 0.00 2.12
7356 9643 6.563422 TCTTTCTTGTGAGTGTTCCATTTTG 58.437 36.000 0.00 0.00 0.00 2.44
7474 9761 2.202623 GCTGACGACCGGCTACAG 60.203 66.667 0.00 7.78 43.80 2.74
7547 9834 4.632292 AGGTAGCCTCCCTTACATTACTT 58.368 43.478 0.00 0.00 0.00 2.24
7569 9856 7.267128 ACTTTTGAGATCATCTTTTGCACAAA 58.733 30.769 0.00 0.00 0.00 2.83
7667 9954 9.914834 ACTGAGAAACTATAGTGAGAAGTATCT 57.085 33.333 6.06 1.11 39.10 1.98
7686 9973 4.749245 TCTTGACCTCGCAATCTTTTTC 57.251 40.909 0.00 0.00 0.00 2.29
7723 10011 6.041637 TCCATCACCTCGCTAAACACTAATAT 59.958 38.462 0.00 0.00 0.00 1.28
7867 10155 0.457851 CCACGAGGAGAGCTTTCGAT 59.542 55.000 14.83 0.00 37.73 3.59
8040 10328 8.517878 CATGTAAATTTTCTGATCAGAACTGGT 58.482 33.333 32.80 21.56 46.13 4.00
8076 10364 4.354087 TCCTAGGCCTTTTTCTTTCTTCCT 59.646 41.667 12.58 0.00 0.00 3.36
8098 10386 4.222124 AGCAACCTCGATTAAATCCTGT 57.778 40.909 0.00 0.00 0.00 4.00
8173 10461 5.056480 GCTGCAACAGGATACATACATACA 58.944 41.667 0.00 0.00 41.41 2.29
8174 10462 5.702670 GCTGCAACAGGATACATACATACAT 59.297 40.000 0.00 0.00 41.41 2.29
8175 10463 6.873605 GCTGCAACAGGATACATACATACATA 59.126 38.462 0.00 0.00 41.41 2.29
8176 10464 7.148573 GCTGCAACAGGATACATACATACATAC 60.149 40.741 0.00 0.00 41.41 2.39
8244 10532 0.605319 CAGCCGGCCAACTCTTTGTA 60.605 55.000 26.15 0.00 0.00 2.41
8260 10548 1.840198 GTATACCCTGGGTCCCCGG 60.840 68.421 24.45 11.51 42.03 5.73
8268 10556 4.892291 GGGTCCCCGGGCTCCATA 62.892 72.222 26.21 2.77 0.00 2.74
8269 10557 2.770904 GGTCCCCGGGCTCCATAA 60.771 66.667 17.73 0.00 0.00 1.90
8270 10558 2.154074 GGTCCCCGGGCTCCATAAT 61.154 63.158 17.73 0.00 0.00 1.28
8271 10559 1.375326 GTCCCCGGGCTCCATAATC 59.625 63.158 17.73 0.00 0.00 1.75
8272 10560 1.846124 TCCCCGGGCTCCATAATCC 60.846 63.158 17.73 0.00 0.00 3.01
8273 10561 2.757077 CCCGGGCTCCATAATCCC 59.243 66.667 8.08 0.00 36.68 3.85
8274 10562 2.757077 CCGGGCTCCATAATCCCC 59.243 66.667 0.00 0.00 36.69 4.81
8275 10563 2.757077 CGGGCTCCATAATCCCCC 59.243 66.667 0.00 0.00 36.69 5.40
8297 10787 2.037136 CCTGCGCCTCTGGACTTTG 61.037 63.158 4.18 0.00 35.98 2.77
8312 10805 0.871163 CTTTGCGTGCAACTGTTGGG 60.871 55.000 21.01 0.00 35.46 4.12
8392 10886 6.151985 CAGATAAGAGCTACGATGGTAGGATT 59.848 42.308 15.67 0.00 45.15 3.01
8562 11063 3.942748 GTGGGTCAACAACACTGAGTTTA 59.057 43.478 0.00 0.00 38.74 2.01
8670 11193 1.580942 CACACAAAGTGGGCATCCG 59.419 57.895 1.93 0.00 44.69 4.18
8739 11262 3.211865 CTGATAGCACCGGTACTGTCTA 58.788 50.000 26.30 14.96 0.00 2.59
8755 11278 5.131784 ACTGTCTAATAGTAAGGGAGTCGG 58.868 45.833 0.00 0.00 0.00 4.79
8782 11305 2.233271 AGCAGACACACCAAAATCCTG 58.767 47.619 0.00 0.00 0.00 3.86
8796 11319 4.895668 AAATCCTGAAGTAACCACCGTA 57.104 40.909 0.00 0.00 0.00 4.02
8871 11396 0.387367 TCGAGCGAGAAACTGCAGTC 60.387 55.000 21.95 8.82 0.00 3.51
8872 11397 0.387878 CGAGCGAGAAACTGCAGTCT 60.388 55.000 21.95 14.23 0.00 3.24
8873 11398 1.345410 GAGCGAGAAACTGCAGTCTC 58.655 55.000 21.95 21.03 37.51 3.36
8877 11402 2.096516 GCGAGAAACTGCAGTCTCTTTG 60.097 50.000 23.19 18.73 38.52 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.746535 TGGAGCAATTTCAGTATACCGA 57.253 40.909 0.00 0.00 0.00 4.69
2 3 4.260784 GCTTGGAGCAATTTCAGTATACCG 60.261 45.833 0.00 0.00 41.89 4.02
3 4 4.036852 GGCTTGGAGCAATTTCAGTATACC 59.963 45.833 0.00 0.00 44.75 2.73
4 5 4.260784 CGGCTTGGAGCAATTTCAGTATAC 60.261 45.833 2.04 0.00 44.75 1.47
5 6 3.876914 CGGCTTGGAGCAATTTCAGTATA 59.123 43.478 2.04 0.00 44.75 1.47
7 8 2.083774 CGGCTTGGAGCAATTTCAGTA 58.916 47.619 2.04 0.00 44.75 2.74
8 9 0.883833 CGGCTTGGAGCAATTTCAGT 59.116 50.000 2.04 0.00 44.75 3.41
20 21 2.032634 TTAAGCGTGCTCGGCTTGG 61.033 57.895 20.30 0.00 35.96 3.61
26 27 1.126846 CTCCAAAGTTAAGCGTGCTCG 59.873 52.381 3.31 3.31 40.37 5.03
33 34 8.542953 CATTTGAAAAGAACTCCAAAGTTAAGC 58.457 33.333 0.00 0.00 45.80 3.09
43 44 4.560128 GAAGCCCATTTGAAAAGAACTCC 58.440 43.478 0.00 0.00 0.00 3.85
44 45 4.560128 GGAAGCCCATTTGAAAAGAACTC 58.440 43.478 0.00 0.00 0.00 3.01
46 47 3.317150 CGGAAGCCCATTTGAAAAGAAC 58.683 45.455 0.00 0.00 0.00 3.01
55 56 2.302587 TCTTTTCCGGAAGCCCATTT 57.697 45.000 17.97 0.00 0.00 2.32
103 104 5.685728 AGAGTTTGGCTTAATAGGGATGAC 58.314 41.667 0.00 0.00 0.00 3.06
105 106 5.529060 GTGAGAGTTTGGCTTAATAGGGATG 59.471 44.000 0.00 0.00 0.00 3.51
118 119 2.874701 CTCCAACAGTGTGAGAGTTTGG 59.125 50.000 12.58 7.83 0.00 3.28
121 122 1.539065 CGCTCCAACAGTGTGAGAGTT 60.539 52.381 18.94 0.00 0.00 3.01
125 126 4.758692 ACGCTCCAACAGTGTGAG 57.241 55.556 0.00 0.88 44.65 3.51
146 147 4.416738 GGCCCTGACCTCACTGCC 62.417 72.222 0.00 0.00 32.49 4.85
149 150 1.462238 AGTTGGCCCTGACCTCACT 60.462 57.895 0.00 0.00 0.00 3.41
170 172 1.833630 CTAGGAGATGACACTTGGGCA 59.166 52.381 0.00 0.00 0.00 5.36
198 200 6.932960 AGAATCAGATCGACATGCATGATTTA 59.067 34.615 32.75 14.81 37.47 1.40
202 204 4.332428 AGAATCAGATCGACATGCATGA 57.668 40.909 32.75 11.53 0.00 3.07
204 206 6.204301 CCTAAAAGAATCAGATCGACATGCAT 59.796 38.462 0.00 0.00 0.00 3.96
209 211 6.070767 AGGTTCCTAAAAGAATCAGATCGACA 60.071 38.462 0.00 0.00 28.66 4.35
210 212 6.342111 AGGTTCCTAAAAGAATCAGATCGAC 58.658 40.000 0.00 0.00 28.66 4.20
218 220 9.320352 GTCTATGAGAAGGTTCCTAAAAGAATC 57.680 37.037 0.00 0.00 0.00 2.52
252 254 3.129462 GGGTTCCAAATTGAAGAGCTAGC 59.871 47.826 6.62 6.62 0.00 3.42
275 277 2.725008 GAGGATCGGTGGCTCGAG 59.275 66.667 8.45 8.45 42.69 4.04
285 287 0.905357 ACCTTGTTCTGGGAGGATCG 59.095 55.000 0.00 0.00 34.37 3.69
294 296 1.507141 GGCCACGACACCTTGTTCTG 61.507 60.000 0.00 0.00 0.00 3.02
296 298 2.604174 CGGCCACGACACCTTGTTC 61.604 63.158 2.24 0.00 44.60 3.18
316 318 1.145571 AACAAGGGCTACAGTGGGAA 58.854 50.000 0.00 0.00 0.00 3.97
356 358 0.672401 ATGTTGTACCAGCGGAACCG 60.672 55.000 9.00 9.00 43.09 4.44
358 360 2.423577 AGAATGTTGTACCAGCGGAAC 58.576 47.619 1.50 0.00 0.00 3.62
362 364 5.607119 AGTTTAAGAATGTTGTACCAGCG 57.393 39.130 0.00 0.00 0.00 5.18
365 367 5.057819 TGCGAGTTTAAGAATGTTGTACCA 58.942 37.500 0.00 0.00 0.00 3.25
375 377 2.747446 GGCCTTGATGCGAGTTTAAGAA 59.253 45.455 0.00 0.00 0.00 2.52
379 381 2.764010 TCTAGGCCTTGATGCGAGTTTA 59.236 45.455 12.58 0.00 0.00 2.01
386 388 3.282021 TGACAATTCTAGGCCTTGATGC 58.718 45.455 17.91 10.41 0.00 3.91
413 415 2.763215 CCCTGGCCTTGGCTACAA 59.237 61.111 11.71 0.00 34.87 2.41
414 416 4.047125 GCCCTGGCCTTGGCTACA 62.047 66.667 23.90 1.21 44.46 2.74
429 431 1.208614 CACTGCTCTTCAAAGCGCC 59.791 57.895 2.29 0.00 45.54 6.53
438 440 0.248843 GCTAGCTCACCACTGCTCTT 59.751 55.000 7.70 0.00 40.35 2.85
481 483 2.825836 GCGATCCAAGTGGGCAGG 60.826 66.667 0.00 0.00 36.21 4.85
492 494 1.375908 TTGGTGCTCTGTGCGATCC 60.376 57.895 0.00 1.26 46.63 3.36
494 496 0.952497 CTGTTGGTGCTCTGTGCGAT 60.952 55.000 0.00 0.00 46.63 4.58
495 497 1.595109 CTGTTGGTGCTCTGTGCGA 60.595 57.895 0.00 0.00 46.63 5.10
497 499 0.607489 ATCCTGTTGGTGCTCTGTGC 60.607 55.000 0.00 0.00 43.25 4.57
498 500 1.538512 CAATCCTGTTGGTGCTCTGTG 59.461 52.381 0.00 0.00 34.23 3.66
499 501 1.901591 CAATCCTGTTGGTGCTCTGT 58.098 50.000 0.00 0.00 34.23 3.41
500 502 0.524862 GCAATCCTGTTGGTGCTCTG 59.475 55.000 0.00 0.00 33.89 3.35
502 504 0.961019 TTGCAATCCTGTTGGTGCTC 59.039 50.000 0.00 0.00 36.60 4.26
503 505 1.547372 GATTGCAATCCTGTTGGTGCT 59.453 47.619 26.03 0.00 36.60 4.40
504 506 1.273048 TGATTGCAATCCTGTTGGTGC 59.727 47.619 31.35 8.48 36.30 5.01
517 519 5.992829 ATCAAAAAGTGAATGCTTGATTGCA 59.007 32.000 0.00 0.00 41.98 4.08
518 520 5.910637 TCAAAAAGTGAATGCTTGATTGC 57.089 34.783 0.00 0.00 31.51 3.56
526 528 9.956720 ATGCTTACTATATCAAAAAGTGAATGC 57.043 29.630 0.00 0.00 40.50 3.56
530 532 9.665719 TGTCATGCTTACTATATCAAAAAGTGA 57.334 29.630 0.00 0.00 41.67 3.41
546 728 4.787135 TCCCCATACATTGTCATGCTTA 57.213 40.909 0.00 0.00 33.05 3.09
554 736 2.507484 CATGCGATCCCCATACATTGT 58.493 47.619 0.00 0.00 0.00 2.71
563 745 0.322816 ATACATGCCATGCGATCCCC 60.323 55.000 4.17 0.00 0.00 4.81
720 967 6.096846 GGACCTTGCTACATCCAAAAATATGT 59.903 38.462 0.00 0.00 39.56 2.29
734 981 6.584185 TTCTAATTTTTGGGACCTTGCTAC 57.416 37.500 0.00 0.00 0.00 3.58
803 1057 2.933287 TCCAATCGGCAGGGTGGT 60.933 61.111 6.61 0.00 32.68 4.16
878 1132 1.449070 GGGAATGGGTCGTTCGTCC 60.449 63.158 0.32 0.32 30.83 4.79
956 1210 0.461961 CGAGGAGAGCGGGATTTTCT 59.538 55.000 0.00 0.00 0.00 2.52
1405 1670 1.728490 GGCCCTCAATTGGACGATGC 61.728 60.000 5.42 0.70 0.00 3.91
1444 1709 2.819595 GGCGCATGGACGTGTGAT 60.820 61.111 10.83 0.00 34.88 3.06
1597 1862 3.861797 CGAGGGTGGCCGGCTAAT 61.862 66.667 28.56 10.05 0.00 1.73
1762 2027 0.994263 GTACGGAACATGCGGTGTAC 59.006 55.000 0.00 0.00 41.14 2.90
1769 2034 7.012044 ACTCCTTATAAATTGTACGGAACATGC 59.988 37.037 0.00 0.00 38.10 4.06
1792 2057 7.807977 ACATCATACCATAACCAATTCACTC 57.192 36.000 0.00 0.00 0.00 3.51
1922 2187 4.182693 TCACACATAAACTGTACCCTCG 57.817 45.455 0.00 0.00 35.91 4.63
1994 2259 5.342525 CACACTGAAACGCGTCTATATATCC 59.657 44.000 14.44 0.00 0.00 2.59
2436 2703 6.790285 AGAGCAAAAATAATTGTTTGGCAG 57.210 33.333 19.52 6.16 35.66 4.85
2552 2868 8.237267 CCACAAGAGTGTTCCAAATAAGATAAC 58.763 37.037 0.00 0.00 44.39 1.89
2907 3223 5.571784 ACAGATGTTGCATTGATCGAAAT 57.428 34.783 0.00 0.00 0.00 2.17
2911 3227 4.611310 AGAACAGATGTTGCATTGATCG 57.389 40.909 2.31 0.00 38.56 3.69
2916 3232 3.944015 GAGCCTAGAACAGATGTTGCATT 59.056 43.478 2.31 0.00 38.56 3.56
2989 3305 7.618502 ATGTAACACGAAGGCATGTAAAATA 57.381 32.000 0.00 0.00 0.00 1.40
2991 3307 5.950758 ATGTAACACGAAGGCATGTAAAA 57.049 34.783 0.00 0.00 0.00 1.52
3366 3696 7.643569 TTAGCACAAAACATGGATATGACAT 57.356 32.000 0.00 0.00 37.73 3.06
3405 3735 1.251251 ACCAGCAGCCTGAAATTCAC 58.749 50.000 0.00 0.00 41.77 3.18
3749 5792 3.193479 CCCCATTTGGTAGAAGCAAGTTC 59.807 47.826 0.00 0.00 36.89 3.01
3876 5919 1.221840 CAGTCTAACATGGCCCGCT 59.778 57.895 0.00 0.00 0.00 5.52
4476 6521 6.018832 CCAAAAACAACAAAGTGCCAGAATAG 60.019 38.462 0.00 0.00 0.00 1.73
4777 6822 4.218852 CCTTATTTTTAACCAGCACCCGAA 59.781 41.667 0.00 0.00 0.00 4.30
4810 6855 7.687941 ACAAATAGGGAAGGATAATAATGCG 57.312 36.000 0.00 0.00 0.00 4.73
5239 7296 6.418101 TGAAAGGGAATCTGACCTGATAAAG 58.582 40.000 0.00 0.00 37.13 1.85
5301 7358 7.564793 TGTATCAACAGCTTCATGGTAGTAAT 58.435 34.615 0.00 0.00 0.00 1.89
5302 7359 6.941857 TGTATCAACAGCTTCATGGTAGTAA 58.058 36.000 0.00 0.00 0.00 2.24
5303 7360 6.538945 TGTATCAACAGCTTCATGGTAGTA 57.461 37.500 0.00 0.00 0.00 1.82
5304 7361 5.420725 TGTATCAACAGCTTCATGGTAGT 57.579 39.130 0.00 0.00 0.00 2.73
6021 8266 3.738982 CCACACCAACACTATGAGACAA 58.261 45.455 0.00 0.00 0.00 3.18
6132 8377 7.010460 CGCATCAATTACTTTCTGTATCACTCA 59.990 37.037 0.00 0.00 0.00 3.41
6198 8443 4.991687 GGAGTCTGAAGTAGTGAAGTTTGG 59.008 45.833 0.00 0.00 0.00 3.28
6263 8508 9.133627 GTGACACATACTGCATCTACAATATAG 57.866 37.037 0.00 0.00 0.00 1.31
6264 8509 8.860088 AGTGACACATACTGCATCTACAATATA 58.140 33.333 8.59 0.00 0.00 0.86
6265 8510 7.654923 CAGTGACACATACTGCATCTACAATAT 59.345 37.037 8.59 0.00 39.09 1.28
6586 8831 3.659786 TGTAACAGCACCACATACAGTC 58.340 45.455 0.00 0.00 0.00 3.51
6879 9153 2.266554 GTTCAGAAGGACAGATGAGCG 58.733 52.381 0.00 0.00 0.00 5.03
6973 9247 3.634910 GCAGGAAAAACTGGACCTACAAA 59.365 43.478 0.00 0.00 38.90 2.83
7003 9277 3.952323 CCAGTTGACTCCGGAGAACTATA 59.048 47.826 37.69 13.34 0.00 1.31
7138 9412 2.964464 ACATCTTCTCGCTCATCCTCAT 59.036 45.455 0.00 0.00 0.00 2.90
7232 9506 8.154856 ACACATAGCGGGACAAATAATAATACT 58.845 33.333 0.00 0.00 0.00 2.12
7233 9507 8.319143 ACACATAGCGGGACAAATAATAATAC 57.681 34.615 0.00 0.00 0.00 1.89
7235 9509 6.995686 TGACACATAGCGGGACAAATAATAAT 59.004 34.615 0.00 0.00 0.00 1.28
7236 9510 6.350103 TGACACATAGCGGGACAAATAATAA 58.650 36.000 0.00 0.00 0.00 1.40
7238 9512 4.776349 TGACACATAGCGGGACAAATAAT 58.224 39.130 0.00 0.00 0.00 1.28
7240 9514 3.897141 TGACACATAGCGGGACAAATA 57.103 42.857 0.00 0.00 0.00 1.40
7241 9515 2.779755 TGACACATAGCGGGACAAAT 57.220 45.000 0.00 0.00 0.00 2.32
7376 9663 5.450137 CCTGTTGTATCGTTAGTTCCTCGAT 60.450 44.000 0.00 0.00 44.53 3.59
7474 9761 3.367395 GGTTGCCTTGCTCTATCCAAAAC 60.367 47.826 0.00 0.00 0.00 2.43
7547 9834 5.984926 GGTTTGTGCAAAAGATGATCTCAAA 59.015 36.000 0.00 0.00 31.33 2.69
7569 9856 8.232913 ACATACAAACTGTAAAGAATTGTGGT 57.767 30.769 14.92 11.36 36.31 4.16
7651 9938 6.205076 GCGAGGTCAAGATACTTCTCACTATA 59.795 42.308 0.00 0.00 0.00 1.31
7667 9954 3.486383 AGGAAAAAGATTGCGAGGTCAA 58.514 40.909 0.00 0.00 0.00 3.18
7686 9973 5.007724 GCGAGGTGATGGATAAAGTTAAAGG 59.992 44.000 0.00 0.00 0.00 3.11
7723 10011 6.183360 GCTTTCAACAACACATTTAGCACAAA 60.183 34.615 0.00 0.00 0.00 2.83
8037 10325 3.963374 CCTAGGAGACAGAATCATCACCA 59.037 47.826 1.05 0.00 0.00 4.17
8038 10326 3.244044 GCCTAGGAGACAGAATCATCACC 60.244 52.174 14.75 0.00 0.00 4.02
8040 10328 2.968574 GGCCTAGGAGACAGAATCATCA 59.031 50.000 14.75 0.00 0.00 3.07
8076 10364 5.105106 TGACAGGATTTAATCGAGGTTGCTA 60.105 40.000 0.00 0.00 0.00 3.49
8098 10386 9.985730 ATCTTGAATTAATCACTTTTGCTTTGA 57.014 25.926 0.00 0.00 37.92 2.69
8231 10519 3.279434 CCAGGGTATACAAAGAGTTGGC 58.721 50.000 5.01 0.00 39.22 4.52
8276 10564 4.154347 GTCCAGAGGCGCAGGGAG 62.154 72.222 10.83 0.00 0.00 4.30
8277 10565 4.704103 AGTCCAGAGGCGCAGGGA 62.704 66.667 10.83 7.14 0.00 4.20
8278 10566 3.259633 AAAGTCCAGAGGCGCAGGG 62.260 63.158 10.83 4.44 0.00 4.45
8297 10787 0.031994 ATTTCCCAACAGTTGCACGC 59.968 50.000 7.88 0.00 0.00 5.34
8312 10805 7.818961 CCTTGGAAGGGCAATGGAACATTTC 62.819 48.000 0.00 0.00 42.93 2.17
8392 10886 6.095300 CCAGTTGCTCATTATCCAACATTACA 59.905 38.462 5.66 0.00 40.85 2.41
8495 10990 9.916360 TGTTAGATGTGTATACTCTCCTTTCTA 57.084 33.333 4.17 2.49 0.00 2.10
8562 11063 4.008074 TCACGAAGGCATTTTTCTCTCT 57.992 40.909 0.00 0.00 0.00 3.10
8739 11262 2.862850 ACCCCGACTCCCTTACTATT 57.137 50.000 0.00 0.00 0.00 1.73
8755 11278 1.263356 TGGTGTGTCTGCTACTACCC 58.737 55.000 11.26 0.00 36.06 3.69
8782 11305 3.993920 TCTGGTTTACGGTGGTTACTTC 58.006 45.455 0.00 0.00 0.00 3.01
8796 11319 0.036010 CGGCTGAGGTGATCTGGTTT 60.036 55.000 0.00 0.00 0.00 3.27
8871 11396 1.882623 GCCTGGAAGACCAACAAAGAG 59.117 52.381 0.00 0.00 46.32 2.85
8872 11397 1.214175 TGCCTGGAAGACCAACAAAGA 59.786 47.619 0.00 0.00 46.32 2.52
8873 11398 1.691196 TGCCTGGAAGACCAACAAAG 58.309 50.000 0.00 0.00 46.32 2.77
8877 11402 3.686016 TCTTATTGCCTGGAAGACCAAC 58.314 45.455 0.00 0.00 46.32 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.