Multiple sequence alignment - TraesCS1D01G093200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G093200 | chr1D | 100.000 | 3047 | 0 | 0 | 1 | 3047 | 79114805 | 79117851 | 0.000000e+00 | 5627.0 |
1 | TraesCS1D01G093200 | chr1D | 77.326 | 1032 | 220 | 13 | 1046 | 2071 | 451941122 | 451940099 | 5.620000e-167 | 597.0 |
2 | TraesCS1D01G093200 | chr1A | 94.088 | 1607 | 80 | 7 | 811 | 2406 | 97792611 | 97794213 | 0.000000e+00 | 2427.0 |
3 | TraesCS1D01G093200 | chr1A | 95.518 | 647 | 22 | 5 | 2403 | 3047 | 251337306 | 251337947 | 0.000000e+00 | 1027.0 |
4 | TraesCS1D01G093200 | chr1A | 90.231 | 389 | 25 | 6 | 1 | 389 | 97789103 | 97789478 | 2.110000e-136 | 496.0 |
5 | TraesCS1D01G093200 | chr1B | 91.917 | 1695 | 83 | 20 | 742 | 2406 | 130009872 | 130011542 | 0.000000e+00 | 2322.0 |
6 | TraesCS1D01G093200 | chr1B | 76.612 | 1039 | 224 | 17 | 1017 | 2047 | 621947455 | 621946428 | 3.430000e-154 | 555.0 |
7 | TraesCS1D01G093200 | chr1B | 83.333 | 264 | 24 | 13 | 467 | 713 | 130007754 | 130008014 | 3.060000e-55 | 226.0 |
8 | TraesCS1D01G093200 | chr5B | 98.134 | 643 | 12 | 0 | 2405 | 3047 | 656908591 | 656907949 | 0.000000e+00 | 1122.0 |
9 | TraesCS1D01G093200 | chr5B | 77.838 | 555 | 102 | 16 | 1505 | 2049 | 47127558 | 47127015 | 1.050000e-84 | 324.0 |
10 | TraesCS1D01G093200 | chr3A | 97.984 | 645 | 9 | 2 | 2406 | 3047 | 170979899 | 170979256 | 0.000000e+00 | 1116.0 |
11 | TraesCS1D01G093200 | chr3A | 75.973 | 591 | 122 | 17 | 1469 | 2046 | 12117721 | 12117138 | 1.380000e-73 | 287.0 |
12 | TraesCS1D01G093200 | chr3A | 75.290 | 603 | 114 | 27 | 1469 | 2046 | 11921132 | 11921724 | 3.900000e-64 | 255.0 |
13 | TraesCS1D01G093200 | chr3A | 87.611 | 113 | 14 | 0 | 102 | 214 | 613377654 | 613377766 | 6.850000e-27 | 132.0 |
14 | TraesCS1D01G093200 | chr3D | 97.546 | 652 | 15 | 1 | 2397 | 3047 | 338919704 | 338920355 | 0.000000e+00 | 1114.0 |
15 | TraesCS1D01G093200 | chr3D | 81.188 | 101 | 15 | 2 | 225 | 321 | 401172228 | 401172328 | 9.060000e-11 | 78.7 |
16 | TraesCS1D01G093200 | chr7B | 97.196 | 642 | 18 | 0 | 2406 | 3047 | 727910686 | 727910045 | 0.000000e+00 | 1086.0 |
17 | TraesCS1D01G093200 | chr7B | 82.482 | 137 | 20 | 4 | 374 | 506 | 303164644 | 303164508 | 1.920000e-22 | 117.0 |
18 | TraesCS1D01G093200 | chr7B | 90.244 | 82 | 8 | 0 | 132 | 213 | 407944766 | 407944685 | 1.160000e-19 | 108.0 |
19 | TraesCS1D01G093200 | chr7B | 85.185 | 81 | 3 | 8 | 485 | 556 | 78323059 | 78323139 | 1.170000e-09 | 75.0 |
20 | TraesCS1D01G093200 | chr7B | 88.889 | 45 | 3 | 2 | 521 | 564 | 711450345 | 711450388 | 2.000000e-03 | 54.7 |
21 | TraesCS1D01G093200 | chr5A | 95.963 | 644 | 19 | 5 | 2406 | 3047 | 299776897 | 299777535 | 0.000000e+00 | 1038.0 |
22 | TraesCS1D01G093200 | chr5D | 95.659 | 645 | 21 | 5 | 2405 | 3047 | 549893036 | 549893675 | 0.000000e+00 | 1029.0 |
23 | TraesCS1D01G093200 | chr5D | 85.841 | 113 | 16 | 0 | 102 | 214 | 518030184 | 518030072 | 1.480000e-23 | 121.0 |
24 | TraesCS1D01G093200 | chr7A | 95.497 | 644 | 21 | 6 | 2406 | 3047 | 600552789 | 600552152 | 0.000000e+00 | 1022.0 |
25 | TraesCS1D01G093200 | chr7A | 95.370 | 648 | 18 | 8 | 2402 | 3047 | 491827682 | 491828319 | 0.000000e+00 | 1020.0 |
26 | TraesCS1D01G093200 | chr7A | 75.547 | 548 | 112 | 10 | 1454 | 1996 | 10831308 | 10831838 | 1.810000e-62 | 250.0 |
27 | TraesCS1D01G093200 | chr7A | 75.322 | 543 | 110 | 11 | 1460 | 1996 | 10380944 | 10381468 | 3.930000e-59 | 239.0 |
28 | TraesCS1D01G093200 | chr7A | 94.595 | 37 | 1 | 1 | 521 | 556 | 66718354 | 66718390 | 4.240000e-04 | 56.5 |
29 | TraesCS1D01G093200 | chr4A | 76.103 | 544 | 110 | 10 | 1460 | 1999 | 726576664 | 726576137 | 1.800000e-67 | 267.0 |
30 | TraesCS1D01G093200 | chr7D | 75.547 | 548 | 110 | 11 | 1460 | 2001 | 11261491 | 11262020 | 6.520000e-62 | 248.0 |
31 | TraesCS1D01G093200 | chr7D | 94.286 | 35 | 1 | 1 | 523 | 556 | 181973443 | 181973477 | 5.000000e-03 | 52.8 |
32 | TraesCS1D01G093200 | chr2D | 75.502 | 498 | 117 | 5 | 1503 | 1999 | 469226591 | 469226098 | 3.930000e-59 | 239.0 |
33 | TraesCS1D01G093200 | chr2D | 84.091 | 132 | 21 | 0 | 1036 | 1167 | 621589990 | 621589859 | 8.870000e-26 | 128.0 |
34 | TraesCS1D01G093200 | chr2D | 84.874 | 119 | 18 | 0 | 213 | 331 | 85926191 | 85926309 | 1.480000e-23 | 121.0 |
35 | TraesCS1D01G093200 | chr2D | 77.419 | 124 | 12 | 11 | 459 | 566 | 486488483 | 486488606 | 3.280000e-05 | 60.2 |
36 | TraesCS1D01G093200 | chr4B | 88.496 | 113 | 13 | 0 | 104 | 216 | 139764457 | 139764345 | 1.470000e-28 | 137.0 |
37 | TraesCS1D01G093200 | chr2B | 81.022 | 137 | 21 | 4 | 374 | 506 | 21919071 | 21918936 | 1.490000e-18 | 104.0 |
38 | TraesCS1D01G093200 | chr2A | 84.615 | 104 | 15 | 1 | 220 | 323 | 720553253 | 720553355 | 5.370000e-18 | 102.0 |
39 | TraesCS1D01G093200 | chr6B | 91.837 | 49 | 2 | 2 | 522 | 568 | 686545254 | 686545206 | 1.960000e-07 | 67.6 |
40 | TraesCS1D01G093200 | chr4D | 89.362 | 47 | 4 | 1 | 521 | 566 | 313885375 | 313885329 | 1.180000e-04 | 58.4 |
41 | TraesCS1D01G093200 | chr3B | 94.595 | 37 | 0 | 1 | 521 | 555 | 77066788 | 77066824 | 4.240000e-04 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G093200 | chr1D | 79114805 | 79117851 | 3046 | False | 5627.0 | 5627 | 100.0000 | 1 | 3047 | 1 | chr1D.!!$F1 | 3046 |
1 | TraesCS1D01G093200 | chr1D | 451940099 | 451941122 | 1023 | True | 597.0 | 597 | 77.3260 | 1046 | 2071 | 1 | chr1D.!!$R1 | 1025 |
2 | TraesCS1D01G093200 | chr1A | 97789103 | 97794213 | 5110 | False | 1461.5 | 2427 | 92.1595 | 1 | 2406 | 2 | chr1A.!!$F2 | 2405 |
3 | TraesCS1D01G093200 | chr1A | 251337306 | 251337947 | 641 | False | 1027.0 | 1027 | 95.5180 | 2403 | 3047 | 1 | chr1A.!!$F1 | 644 |
4 | TraesCS1D01G093200 | chr1B | 130007754 | 130011542 | 3788 | False | 1274.0 | 2322 | 87.6250 | 467 | 2406 | 2 | chr1B.!!$F1 | 1939 |
5 | TraesCS1D01G093200 | chr1B | 621946428 | 621947455 | 1027 | True | 555.0 | 555 | 76.6120 | 1017 | 2047 | 1 | chr1B.!!$R1 | 1030 |
6 | TraesCS1D01G093200 | chr5B | 656907949 | 656908591 | 642 | True | 1122.0 | 1122 | 98.1340 | 2405 | 3047 | 1 | chr5B.!!$R2 | 642 |
7 | TraesCS1D01G093200 | chr5B | 47127015 | 47127558 | 543 | True | 324.0 | 324 | 77.8380 | 1505 | 2049 | 1 | chr5B.!!$R1 | 544 |
8 | TraesCS1D01G093200 | chr3A | 170979256 | 170979899 | 643 | True | 1116.0 | 1116 | 97.9840 | 2406 | 3047 | 1 | chr3A.!!$R2 | 641 |
9 | TraesCS1D01G093200 | chr3A | 12117138 | 12117721 | 583 | True | 287.0 | 287 | 75.9730 | 1469 | 2046 | 1 | chr3A.!!$R1 | 577 |
10 | TraesCS1D01G093200 | chr3A | 11921132 | 11921724 | 592 | False | 255.0 | 255 | 75.2900 | 1469 | 2046 | 1 | chr3A.!!$F1 | 577 |
11 | TraesCS1D01G093200 | chr3D | 338919704 | 338920355 | 651 | False | 1114.0 | 1114 | 97.5460 | 2397 | 3047 | 1 | chr3D.!!$F1 | 650 |
12 | TraesCS1D01G093200 | chr7B | 727910045 | 727910686 | 641 | True | 1086.0 | 1086 | 97.1960 | 2406 | 3047 | 1 | chr7B.!!$R3 | 641 |
13 | TraesCS1D01G093200 | chr5A | 299776897 | 299777535 | 638 | False | 1038.0 | 1038 | 95.9630 | 2406 | 3047 | 1 | chr5A.!!$F1 | 641 |
14 | TraesCS1D01G093200 | chr5D | 549893036 | 549893675 | 639 | False | 1029.0 | 1029 | 95.6590 | 2405 | 3047 | 1 | chr5D.!!$F1 | 642 |
15 | TraesCS1D01G093200 | chr7A | 600552152 | 600552789 | 637 | True | 1022.0 | 1022 | 95.4970 | 2406 | 3047 | 1 | chr7A.!!$R1 | 641 |
16 | TraesCS1D01G093200 | chr7A | 491827682 | 491828319 | 637 | False | 1020.0 | 1020 | 95.3700 | 2402 | 3047 | 1 | chr7A.!!$F4 | 645 |
17 | TraesCS1D01G093200 | chr7A | 10831308 | 10831838 | 530 | False | 250.0 | 250 | 75.5470 | 1454 | 1996 | 1 | chr7A.!!$F2 | 542 |
18 | TraesCS1D01G093200 | chr7A | 10380944 | 10381468 | 524 | False | 239.0 | 239 | 75.3220 | 1460 | 1996 | 1 | chr7A.!!$F1 | 536 |
19 | TraesCS1D01G093200 | chr4A | 726576137 | 726576664 | 527 | True | 267.0 | 267 | 76.1030 | 1460 | 1999 | 1 | chr4A.!!$R1 | 539 |
20 | TraesCS1D01G093200 | chr7D | 11261491 | 11262020 | 529 | False | 248.0 | 248 | 75.5470 | 1460 | 2001 | 1 | chr7D.!!$F1 | 541 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
850 | 4640 | 0.32005 | GCGAGATTCATCCTCCTCCC | 59.68 | 60.0 | 0.0 | 0.0 | 0.0 | 4.3 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2729 | 6579 | 1.270571 | TGAAGTGCAATGTCTACGCCA | 60.271 | 47.619 | 0.0 | 0.0 | 0.0 | 5.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 1.561542 | ACTTTTGGGCGAGATGAGGAT | 59.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
47 | 48 | 1.702957 | AGGATTCGGGGAACAAGAACA | 59.297 | 47.619 | 0.00 | 0.00 | 32.65 | 3.18 |
82 | 83 | 1.526575 | CGGGCATTGTGGGCATATCC | 61.527 | 60.000 | 0.00 | 0.00 | 34.52 | 2.59 |
124 | 125 | 6.440010 | TCAGGGGCAAATCATCAAAAATCTAA | 59.560 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
127 | 128 | 8.162746 | AGGGGCAAATCATCAAAAATCTAAAAA | 58.837 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
153 | 154 | 6.258727 | AGGTGTAGCAAATAATCGATGACAAG | 59.741 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
155 | 156 | 7.201609 | GGTGTAGCAAATAATCGATGACAAGAA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
157 | 158 | 8.726068 | TGTAGCAAATAATCGATGACAAGAAAA | 58.274 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
158 | 159 | 9.554724 | GTAGCAAATAATCGATGACAAGAAAAA | 57.445 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
217 | 218 | 3.334910 | AATCCTCAAATTCCCCATCCC | 57.665 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
279 | 280 | 9.653287 | GGTTTTTGGAGGATTAAAATTCTTAGG | 57.347 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
309 | 310 | 8.786826 | TTTTCTACGTTGATCCTTTGATATGT | 57.213 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
310 | 311 | 9.878667 | TTTTCTACGTTGATCCTTTGATATGTA | 57.121 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
311 | 312 | 9.529325 | TTTCTACGTTGATCCTTTGATATGTAG | 57.471 | 33.333 | 0.00 | 0.00 | 33.81 | 2.74 |
312 | 313 | 7.658261 | TCTACGTTGATCCTTTGATATGTAGG | 58.342 | 38.462 | 0.00 | 0.00 | 33.57 | 3.18 |
313 | 314 | 6.479972 | ACGTTGATCCTTTGATATGTAGGA | 57.520 | 37.500 | 0.00 | 0.00 | 41.99 | 2.94 |
348 | 349 | 4.137543 | GGAAATCTGTCACCACTCAAACT | 58.862 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
353 | 354 | 5.560966 | TCTGTCACCACTCAAACTTTTTC | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
354 | 355 | 4.398044 | TCTGTCACCACTCAAACTTTTTCC | 59.602 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
356 | 357 | 4.770010 | TGTCACCACTCAAACTTTTTCCTT | 59.230 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
358 | 359 | 6.163476 | GTCACCACTCAAACTTTTTCCTTTT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
361 | 362 | 7.815549 | TCACCACTCAAACTTTTTCCTTTTTAC | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
383 | 384 | 6.731292 | ACAATTCTTTTGCTTTTAGACCCT | 57.269 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
384 | 385 | 6.515832 | ACAATTCTTTTGCTTTTAGACCCTG | 58.484 | 36.000 | 0.00 | 0.00 | 0.00 | 4.45 |
385 | 386 | 6.323739 | ACAATTCTTTTGCTTTTAGACCCTGA | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
386 | 387 | 7.015584 | ACAATTCTTTTGCTTTTAGACCCTGAT | 59.984 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
388 | 389 | 8.650143 | ATTCTTTTGCTTTTAGACCCTGATAA | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 1.75 |
389 | 390 | 8.472007 | TTCTTTTGCTTTTAGACCCTGATAAA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
390 | 391 | 8.650143 | TCTTTTGCTTTTAGACCCTGATAAAT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
391 | 392 | 8.522830 | TCTTTTGCTTTTAGACCCTGATAAATG | 58.477 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
393 | 394 | 4.644685 | TGCTTTTAGACCCTGATAAATGCC | 59.355 | 41.667 | 10.93 | 0.00 | 39.46 | 4.40 |
394 | 395 | 4.644685 | GCTTTTAGACCCTGATAAATGCCA | 59.355 | 41.667 | 0.00 | 0.00 | 36.66 | 4.92 |
395 | 396 | 5.450550 | GCTTTTAGACCCTGATAAATGCCAC | 60.451 | 44.000 | 0.00 | 0.00 | 36.66 | 5.01 |
396 | 397 | 4.853468 | TTAGACCCTGATAAATGCCACA | 57.147 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
397 | 398 | 3.004752 | AGACCCTGATAAATGCCACAC | 57.995 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
399 | 400 | 1.004277 | ACCCTGATAAATGCCACACGT | 59.996 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
400 | 401 | 1.401552 | CCCTGATAAATGCCACACGTG | 59.598 | 52.381 | 15.48 | 15.48 | 0.00 | 4.49 |
401 | 402 | 2.083774 | CCTGATAAATGCCACACGTGT | 58.916 | 47.619 | 17.22 | 17.22 | 0.00 | 4.49 |
402 | 403 | 2.159531 | CCTGATAAATGCCACACGTGTG | 60.160 | 50.000 | 36.13 | 36.13 | 45.23 | 3.82 |
416 | 417 | 6.156932 | CACACGTGTGGCATGAATATATAG | 57.843 | 41.667 | 35.65 | 8.80 | 42.10 | 1.31 |
417 | 418 | 4.690748 | ACACGTGTGGCATGAATATATAGC | 59.309 | 41.667 | 22.71 | 0.00 | 34.19 | 2.97 |
418 | 419 | 4.690280 | CACGTGTGGCATGAATATATAGCA | 59.310 | 41.667 | 7.58 | 0.00 | 0.00 | 3.49 |
419 | 420 | 5.179182 | CACGTGTGGCATGAATATATAGCAA | 59.821 | 40.000 | 7.58 | 0.00 | 0.00 | 3.91 |
420 | 421 | 5.179368 | ACGTGTGGCATGAATATATAGCAAC | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
421 | 422 | 5.409520 | CGTGTGGCATGAATATATAGCAACT | 59.590 | 40.000 | 0.00 | 0.00 | 30.59 | 3.16 |
422 | 423 | 6.401474 | CGTGTGGCATGAATATATAGCAACTC | 60.401 | 42.308 | 0.00 | 0.00 | 30.59 | 3.01 |
423 | 424 | 5.939883 | TGTGGCATGAATATATAGCAACTCC | 59.060 | 40.000 | 0.00 | 4.21 | 30.59 | 3.85 |
424 | 425 | 5.063944 | GTGGCATGAATATATAGCAACTCCG | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
425 | 426 | 5.046663 | TGGCATGAATATATAGCAACTCCGA | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 4.55 |
426 | 427 | 6.051717 | GGCATGAATATATAGCAACTCCGAT | 58.948 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
427 | 428 | 6.540189 | GGCATGAATATATAGCAACTCCGATT | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
428 | 429 | 7.710907 | GGCATGAATATATAGCAACTCCGATTA | 59.289 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
454 | 455 | 5.783100 | TTTATGGGAAGTTTAGTAACGCG | 57.217 | 39.130 | 3.53 | 3.53 | 39.31 | 6.01 |
456 | 457 | 2.676076 | TGGGAAGTTTAGTAACGCGAC | 58.324 | 47.619 | 15.93 | 0.00 | 39.31 | 5.19 |
461 | 462 | 3.476295 | AGTTTAGTAACGCGACGATGA | 57.524 | 42.857 | 15.93 | 0.00 | 39.31 | 2.92 |
469 | 470 | 0.782384 | ACGCGACGATGACAACTTTC | 59.218 | 50.000 | 15.93 | 0.00 | 0.00 | 2.62 |
470 | 471 | 1.060713 | CGCGACGATGACAACTTTCT | 58.939 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
473 | 474 | 3.603857 | CGCGACGATGACAACTTTCTTTT | 60.604 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
474 | 475 | 3.900703 | GCGACGATGACAACTTTCTTTTC | 59.099 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
475 | 476 | 4.134546 | CGACGATGACAACTTTCTTTTCG | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
476 | 477 | 4.455124 | GACGATGACAACTTTCTTTTCGG | 58.545 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
478 | 479 | 4.755123 | ACGATGACAACTTTCTTTTCGGAT | 59.245 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
479 | 480 | 5.082059 | CGATGACAACTTTCTTTTCGGATG | 58.918 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
480 | 481 | 4.829064 | TGACAACTTTCTTTTCGGATGG | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
481 | 482 | 3.004315 | TGACAACTTTCTTTTCGGATGGC | 59.996 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
482 | 483 | 2.955660 | ACAACTTTCTTTTCGGATGGCA | 59.044 | 40.909 | 0.00 | 0.00 | 0.00 | 4.92 |
487 | 535 | 5.610398 | ACTTTCTTTTCGGATGGCAATTTT | 58.390 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
511 | 559 | 6.668541 | TTTTCGAATGGCAATTTTTGTTGA | 57.331 | 29.167 | 0.00 | 0.00 | 0.00 | 3.18 |
517 | 565 | 8.279103 | TCGAATGGCAATTTTTGTTGAAAATAC | 58.721 | 29.630 | 0.00 | 0.00 | 44.98 | 1.89 |
520 | 568 | 6.709643 | TGGCAATTTTTGTTGAAAATACGTG | 58.290 | 32.000 | 0.00 | 0.00 | 44.98 | 4.49 |
522 | 570 | 7.062848 | GGCAATTTTTGTTGAAAATACGTGAG | 58.937 | 34.615 | 0.00 | 0.00 | 44.98 | 3.51 |
523 | 571 | 7.254286 | GGCAATTTTTGTTGAAAATACGTGAGT | 60.254 | 33.333 | 0.00 | 0.00 | 44.98 | 3.41 |
560 | 617 | 8.227119 | CACGTGTGACACTTATCATTTGAATTA | 58.773 | 33.333 | 14.42 | 0.00 | 31.34 | 1.40 |
582 | 639 | 9.814899 | AATTATTTTTCTGACACATCAAACACA | 57.185 | 25.926 | 0.00 | 0.00 | 33.30 | 3.72 |
586 | 644 | 9.814899 | ATTTTTCTGACACATCAAACACATTTA | 57.185 | 25.926 | 0.00 | 0.00 | 33.30 | 1.40 |
630 | 688 | 9.950496 | AATGGATATGTCACTTCAATCCTATAC | 57.050 | 33.333 | 0.00 | 0.00 | 37.57 | 1.47 |
660 | 722 | 7.186570 | TCTATTCATGTGTTCTGAGAATCCA | 57.813 | 36.000 | 0.00 | 0.00 | 31.89 | 3.41 |
664 | 726 | 3.744238 | TGTGTTCTGAGAATCCAACGA | 57.256 | 42.857 | 0.00 | 0.00 | 31.43 | 3.85 |
674 | 736 | 3.574614 | AGAATCCAACGAATTTTTGGCG | 58.425 | 40.909 | 12.80 | 0.00 | 42.96 | 5.69 |
689 | 999 | 2.121538 | GGCGGAGAAAATGGAGGCC | 61.122 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
694 | 1004 | 1.657751 | GAGAAAATGGAGGCCGCCAC | 61.658 | 60.000 | 32.15 | 18.02 | 41.56 | 5.01 |
729 | 1097 | 4.595986 | TGACCTTAACCCCAAATCTAAGC | 58.404 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
730 | 1098 | 4.043561 | TGACCTTAACCCCAAATCTAAGCA | 59.956 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
731 | 1099 | 5.201243 | GACCTTAACCCCAAATCTAAGCAT | 58.799 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
732 | 1100 | 5.589831 | ACCTTAACCCCAAATCTAAGCATT | 58.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
734 | 1102 | 6.070824 | ACCTTAACCCCAAATCTAAGCATTTG | 60.071 | 38.462 | 1.26 | 1.26 | 41.59 | 2.32 |
735 | 1103 | 6.154363 | CCTTAACCCCAAATCTAAGCATTTGA | 59.846 | 38.462 | 8.40 | 0.00 | 43.70 | 2.69 |
738 | 1106 | 4.026052 | CCCCAAATCTAAGCATTTGACCT | 58.974 | 43.478 | 8.40 | 0.00 | 43.70 | 3.85 |
739 | 1107 | 4.098501 | CCCCAAATCTAAGCATTTGACCTC | 59.901 | 45.833 | 8.40 | 0.00 | 43.70 | 3.85 |
740 | 1108 | 4.201950 | CCCAAATCTAAGCATTTGACCTCG | 60.202 | 45.833 | 8.40 | 0.00 | 43.70 | 4.63 |
850 | 4640 | 0.320050 | GCGAGATTCATCCTCCTCCC | 59.680 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
903 | 4701 | 1.348775 | AATCCCCTACTGGCCTGCTC | 61.349 | 60.000 | 9.95 | 0.00 | 0.00 | 4.26 |
969 | 4767 | 0.948678 | GCCGCCGCCATTAATTTCTA | 59.051 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1219 | 5017 | 2.074547 | TTTCCTCGACCTTGTTAGCG | 57.925 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1232 | 5030 | 2.707849 | TTAGCGAGGACACCGAGGC | 61.708 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
1264 | 5062 | 1.802337 | CGAGGTCAGGTTGGTCGACA | 61.802 | 60.000 | 18.91 | 0.27 | 32.32 | 4.35 |
1325 | 5123 | 1.126113 | GACGCCGTATGTGTTCAACAG | 59.874 | 52.381 | 0.00 | 0.00 | 43.64 | 3.16 |
1331 | 5129 | 3.491356 | CGTATGTGTTCAACAGCAATGG | 58.509 | 45.455 | 0.00 | 0.00 | 43.64 | 3.16 |
1334 | 5132 | 1.333308 | TGTGTTCAACAGCAATGGACG | 59.667 | 47.619 | 0.00 | 0.00 | 33.78 | 4.79 |
1340 | 5138 | 2.002586 | CAACAGCAATGGACGTAGGAG | 58.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
1344 | 5142 | 0.530870 | GCAATGGACGTAGGAGCTCC | 60.531 | 60.000 | 26.22 | 26.22 | 0.00 | 4.70 |
1424 | 5222 | 1.723542 | GTGCGATGTCACAGTTCTGAG | 59.276 | 52.381 | 6.83 | 0.00 | 36.97 | 3.35 |
1908 | 5721 | 0.034616 | ACTGCAGCAACCTCAGAGAC | 59.965 | 55.000 | 15.27 | 0.00 | 0.00 | 3.36 |
1933 | 5746 | 5.643777 | GCTTGCCTTGAGTTTATCACTTCTA | 59.356 | 40.000 | 0.00 | 0.00 | 37.77 | 2.10 |
2014 | 5827 | 5.221722 | TGCCCTTCTATTGTCATAGATGTCC | 60.222 | 44.000 | 0.00 | 0.00 | 40.97 | 4.02 |
2021 | 5834 | 8.007405 | TCTATTGTCATAGATGTCCTCGAAAA | 57.993 | 34.615 | 0.00 | 0.00 | 37.13 | 2.29 |
2058 | 5871 | 5.391097 | CCGCAAAATTTAGTACGTTCATCCA | 60.391 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2145 | 5960 | 5.175859 | TGGCTTCTCAGTTATTAGTTTCCG | 58.824 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2217 | 6062 | 7.185565 | AGGCTCCTCTTGCTATATCTTGTATA | 58.814 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
2235 | 6080 | 7.538678 | TCTTGTATATGATGACGATTGACGATG | 59.461 | 37.037 | 0.00 | 0.00 | 45.77 | 3.84 |
2236 | 6081 | 6.908825 | TGTATATGATGACGATTGACGATGA | 58.091 | 36.000 | 0.00 | 0.00 | 45.77 | 2.92 |
2290 | 6135 | 2.151202 | GTTCTCGAAAATGCCCTGACA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
2366 | 6211 | 8.829612 | CCTTAATTTCTCAATGCTGTTTGTTTT | 58.170 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
2464 | 6309 | 7.339721 | TCGAAGGTTGAGACTCATAGACTAATT | 59.660 | 37.037 | 5.87 | 0.00 | 0.00 | 1.40 |
2607 | 6456 | 4.631377 | CGTCAATTTGTCCTGCAGATTAGA | 59.369 | 41.667 | 17.39 | 0.00 | 31.63 | 2.10 |
2729 | 6579 | 9.453572 | TGCTGAAACAATACTTGAGATATTTCT | 57.546 | 29.630 | 0.00 | 0.00 | 33.88 | 2.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 1.213430 | ACCTTGTTCTTGTTCCCCGAA | 59.787 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
47 | 48 | 1.450211 | CCGTGTGAGACCCAACCTT | 59.550 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
82 | 83 | 0.752658 | TGACGACATGAGCCCATAGG | 59.247 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
85 | 86 | 1.524002 | CCTGACGACATGAGCCCAT | 59.476 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
124 | 125 | 7.968405 | GTCATCGATTATTTGCTACACCTTTTT | 59.032 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
127 | 128 | 6.112734 | TGTCATCGATTATTTGCTACACCTT | 58.887 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
153 | 154 | 3.876274 | GAGGATTTGCCCCTCTTTTTC | 57.124 | 47.619 | 0.00 | 0.00 | 45.18 | 2.29 |
178 | 179 | 4.021544 | GGATTTGCCACAAGTTTGATGGTA | 60.022 | 41.667 | 0.00 | 0.47 | 34.21 | 3.25 |
217 | 218 | 5.890424 | TTAAATCAAAGGAGCCCTAAACG | 57.110 | 39.130 | 0.00 | 0.00 | 31.13 | 3.60 |
302 | 303 | 6.873605 | CCTACGAAATGCAATCCTACATATCA | 59.126 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
304 | 305 | 7.004555 | TCCTACGAAATGCAATCCTACATAT | 57.995 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
305 | 306 | 6.413783 | TCCTACGAAATGCAATCCTACATA | 57.586 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
306 | 307 | 5.290493 | TCCTACGAAATGCAATCCTACAT | 57.710 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
307 | 308 | 4.746535 | TCCTACGAAATGCAATCCTACA | 57.253 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
308 | 309 | 6.483640 | AGATTTCCTACGAAATGCAATCCTAC | 59.516 | 38.462 | 4.66 | 0.00 | 46.48 | 3.18 |
309 | 310 | 6.483307 | CAGATTTCCTACGAAATGCAATCCTA | 59.517 | 38.462 | 4.66 | 0.00 | 46.48 | 2.94 |
310 | 311 | 5.297776 | CAGATTTCCTACGAAATGCAATCCT | 59.702 | 40.000 | 4.66 | 0.00 | 46.48 | 3.24 |
311 | 312 | 5.066505 | ACAGATTTCCTACGAAATGCAATCC | 59.933 | 40.000 | 4.66 | 0.00 | 46.48 | 3.01 |
312 | 313 | 6.124088 | ACAGATTTCCTACGAAATGCAATC | 57.876 | 37.500 | 4.66 | 0.00 | 46.48 | 2.67 |
313 | 314 | 5.647658 | TGACAGATTTCCTACGAAATGCAAT | 59.352 | 36.000 | 4.66 | 0.00 | 46.48 | 3.56 |
334 | 335 | 4.983671 | AGGAAAAAGTTTGAGTGGTGAC | 57.016 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
335 | 336 | 5.993748 | AAAGGAAAAAGTTTGAGTGGTGA | 57.006 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
356 | 357 | 9.320352 | GGGTCTAAAAGCAAAAGAATTGTAAAA | 57.680 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
358 | 359 | 8.141268 | CAGGGTCTAAAAGCAAAAGAATTGTAA | 58.859 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
361 | 362 | 6.748132 | TCAGGGTCTAAAAGCAAAAGAATTG | 58.252 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
367 | 368 | 7.096551 | GCATTTATCAGGGTCTAAAAGCAAAA | 58.903 | 34.615 | 0.00 | 0.00 | 33.82 | 2.44 |
372 | 373 | 5.652014 | TGTGGCATTTATCAGGGTCTAAAAG | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
377 | 378 | 2.680805 | CGTGTGGCATTTATCAGGGTCT | 60.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
393 | 394 | 5.389830 | GCTATATATTCATGCCACACGTGTG | 60.390 | 44.000 | 36.13 | 36.13 | 45.23 | 3.82 |
394 | 395 | 4.690748 | GCTATATATTCATGCCACACGTGT | 59.309 | 41.667 | 17.22 | 17.22 | 36.60 | 4.49 |
395 | 396 | 4.690280 | TGCTATATATTCATGCCACACGTG | 59.310 | 41.667 | 15.48 | 15.48 | 36.55 | 4.49 |
396 | 397 | 4.893608 | TGCTATATATTCATGCCACACGT | 58.106 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
397 | 398 | 5.409520 | AGTTGCTATATATTCATGCCACACG | 59.590 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
399 | 400 | 5.939883 | GGAGTTGCTATATATTCATGCCACA | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
400 | 401 | 5.063944 | CGGAGTTGCTATATATTCATGCCAC | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 5.01 |
401 | 402 | 5.046663 | TCGGAGTTGCTATATATTCATGCCA | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 4.92 |
402 | 403 | 5.419542 | TCGGAGTTGCTATATATTCATGCC | 58.580 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
403 | 404 | 7.545362 | AATCGGAGTTGCTATATATTCATGC | 57.455 | 36.000 | 0.00 | 0.00 | 0.00 | 4.06 |
438 | 439 | 2.584791 | TCGTCGCGTTACTAAACTTCC | 58.415 | 47.619 | 5.77 | 0.00 | 33.15 | 3.46 |
439 | 440 | 3.848019 | TCATCGTCGCGTTACTAAACTTC | 59.152 | 43.478 | 5.77 | 0.00 | 33.15 | 3.01 |
453 | 454 | 4.134546 | CGAAAAGAAAGTTGTCATCGTCG | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 5.12 |
454 | 455 | 4.210537 | TCCGAAAAGAAAGTTGTCATCGTC | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
456 | 457 | 4.725556 | TCCGAAAAGAAAGTTGTCATCG | 57.274 | 40.909 | 0.00 | 0.00 | 0.00 | 3.84 |
461 | 462 | 2.955660 | TGCCATCCGAAAAGAAAGTTGT | 59.044 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
487 | 535 | 7.076842 | TCAACAAAAATTGCCATTCGAAAAA | 57.923 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
511 | 559 | 5.122554 | TGTGACACAAACACTCACGTATTTT | 59.877 | 36.000 | 5.62 | 0.00 | 37.69 | 1.82 |
515 | 563 | 2.924926 | GTGTGACACAAACACTCACGTA | 59.075 | 45.455 | 10.50 | 0.00 | 43.69 | 3.57 |
517 | 565 | 1.266842 | CGTGTGACACAAACACTCACG | 60.267 | 52.381 | 16.74 | 3.17 | 44.64 | 4.35 |
520 | 568 | 1.730064 | ACACGTGTGACACAAACACTC | 59.270 | 47.619 | 22.71 | 0.00 | 44.64 | 3.51 |
560 | 617 | 8.721019 | AAATGTGTTTGATGTGTCAGAAAAAT | 57.279 | 26.923 | 0.00 | 0.00 | 35.39 | 1.82 |
660 | 722 | 3.719173 | TTTCTCCGCCAAAAATTCGTT | 57.281 | 38.095 | 0.00 | 0.00 | 0.00 | 3.85 |
664 | 726 | 4.563374 | CCTCCATTTTCTCCGCCAAAAATT | 60.563 | 41.667 | 0.00 | 0.00 | 33.86 | 1.82 |
674 | 736 | 2.121538 | GGCGGCCTCCATTTTCTCC | 61.122 | 63.158 | 12.87 | 0.00 | 0.00 | 3.71 |
694 | 1004 | 1.954362 | AAGGTCAGAGCTAGCGGCAG | 61.954 | 60.000 | 9.55 | 2.89 | 44.79 | 4.85 |
729 | 1097 | 1.363744 | GACAGGAGCGAGGTCAAATG | 58.636 | 55.000 | 4.64 | 2.93 | 0.00 | 2.32 |
730 | 1098 | 0.108615 | CGACAGGAGCGAGGTCAAAT | 60.109 | 55.000 | 4.64 | 0.00 | 0.00 | 2.32 |
731 | 1099 | 1.289066 | CGACAGGAGCGAGGTCAAA | 59.711 | 57.895 | 4.64 | 0.00 | 0.00 | 2.69 |
732 | 1100 | 2.636412 | CCGACAGGAGCGAGGTCAA | 61.636 | 63.158 | 4.64 | 0.00 | 41.02 | 3.18 |
734 | 1102 | 4.500116 | GCCGACAGGAGCGAGGTC | 62.500 | 72.222 | 0.00 | 0.00 | 41.02 | 3.85 |
740 | 1108 | 4.500116 | GAGGTCGCCGACAGGAGC | 62.500 | 72.222 | 20.08 | 0.57 | 41.02 | 4.70 |
837 | 4627 | 0.552848 | GCAATGGGGAGGAGGATGAA | 59.447 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
850 | 4640 | 1.992519 | CTGGGGAGAGGGAGCAATGG | 61.993 | 65.000 | 0.00 | 0.00 | 0.00 | 3.16 |
884 | 4682 | 1.308216 | AGCAGGCCAGTAGGGGATT | 60.308 | 57.895 | 5.01 | 0.00 | 37.04 | 3.01 |
903 | 4701 | 3.064545 | GGAAAAGTGATCTCAAGGCATCG | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 3.84 |
969 | 4767 | 1.210155 | GAAATTGGAGCTTGCGCGT | 59.790 | 52.632 | 8.43 | 0.00 | 42.32 | 6.01 |
1219 | 5017 | 3.827898 | CCTCGCCTCGGTGTCCTC | 61.828 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
1232 | 5030 | 2.202623 | CCTCGAAGAACGCCCTCG | 60.203 | 66.667 | 0.00 | 0.00 | 42.26 | 4.63 |
1264 | 5062 | 0.955919 | GGCGGCAGCTTGTTAGTCTT | 60.956 | 55.000 | 9.17 | 0.00 | 44.37 | 3.01 |
1325 | 5123 | 0.530870 | GGAGCTCCTACGTCCATTGC | 60.531 | 60.000 | 26.25 | 0.00 | 0.00 | 3.56 |
1334 | 5132 | 4.208686 | CGCCCACGGAGCTCCTAC | 62.209 | 72.222 | 29.73 | 13.23 | 34.97 | 3.18 |
1908 | 5721 | 2.744202 | AGTGATAAACTCAAGGCAAGCG | 59.256 | 45.455 | 0.00 | 0.00 | 31.64 | 4.68 |
1933 | 5746 | 5.485620 | CATGACATCATCCATTCTATCCGT | 58.514 | 41.667 | 0.00 | 0.00 | 33.61 | 4.69 |
2049 | 5862 | 6.603237 | TCATAAGCTAAACATGGATGAACG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
2119 | 5932 | 6.655425 | GGAAACTAATAACTGAGAAGCCAACT | 59.345 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2145 | 5960 | 3.441500 | ACCCTTCTCCAAAAGATCACC | 57.558 | 47.619 | 0.00 | 0.00 | 32.82 | 4.02 |
2217 | 6062 | 5.536260 | AGATTCATCGTCAATCGTCATCAT | 58.464 | 37.500 | 0.00 | 0.00 | 40.80 | 2.45 |
2290 | 6135 | 6.879458 | CAGTAACCTAATTGTTTAGCCAGACT | 59.121 | 38.462 | 0.00 | 0.00 | 34.62 | 3.24 |
2366 | 6211 | 9.565090 | CATCTCTTTCCAATAATGAGAATGGTA | 57.435 | 33.333 | 7.23 | 0.00 | 37.34 | 3.25 |
2367 | 6212 | 7.504911 | CCATCTCTTTCCAATAATGAGAATGGT | 59.495 | 37.037 | 7.23 | 0.00 | 37.34 | 3.55 |
2464 | 6309 | 6.326843 | TCCAGCAGTAGTCTAGACTAGTCATA | 59.673 | 42.308 | 29.63 | 11.31 | 43.63 | 2.15 |
2607 | 6456 | 5.360714 | CCAACATGGAAATATGCTTACTGGT | 59.639 | 40.000 | 0.00 | 0.00 | 40.96 | 4.00 |
2729 | 6579 | 1.270571 | TGAAGTGCAATGTCTACGCCA | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.