Multiple sequence alignment - TraesCS1D01G092400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G092400 chr1D 100.000 4482 0 0 1 4482 78983868 78979387 0.000000e+00 8277.0
1 TraesCS1D01G092400 chr1D 85.740 554 56 16 238 777 19110589 19111133 8.420000e-157 564.0
2 TraesCS1D01G092400 chr1D 90.650 246 11 2 1 234 438144600 438144845 2.600000e-82 316.0
3 TraesCS1D01G092400 chr1D 97.872 94 2 0 141 234 78983631 78983538 3.590000e-36 163.0
4 TraesCS1D01G092400 chr1A 91.802 2086 144 12 1456 3529 96471264 96473334 0.000000e+00 2880.0
5 TraesCS1D01G092400 chr1A 85.991 1756 227 12 778 2529 96462807 96464547 0.000000e+00 1862.0
6 TraesCS1D01G092400 chr1A 88.174 1057 103 16 2561 3603 96464548 96465596 0.000000e+00 1240.0
7 TraesCS1D01G092400 chr1A 95.436 482 20 2 3531 4011 96473415 96473895 0.000000e+00 767.0
8 TraesCS1D01G092400 chr1A 83.858 508 78 4 778 1283 96470623 96471128 8.720000e-132 481.0
9 TraesCS1D01G092400 chr1A 82.402 483 74 11 238 717 544473259 544473733 1.160000e-110 411.0
10 TraesCS1D01G092400 chr6A 84.806 2738 310 53 808 3482 574499 571805 0.000000e+00 2654.0
11 TraesCS1D01G092400 chr6A 85.231 650 83 7 1926 2567 1411840 1412484 0.000000e+00 656.0
12 TraesCS1D01G092400 chr6A 88.608 237 23 4 3582 3816 1413396 1413630 7.340000e-73 285.0
13 TraesCS1D01G092400 chr6A 81.304 230 43 0 4006 4235 184969167 184969396 2.130000e-43 187.0
14 TraesCS1D01G092400 chr1B 92.123 1752 110 4 779 2529 123967776 123966052 0.000000e+00 2446.0
15 TraesCS1D01G092400 chr1B 92.519 1457 90 13 2561 4008 123966051 123964605 0.000000e+00 2069.0
16 TraesCS1D01G092400 chr1B 88.669 759 65 12 2385 3132 123974228 123973480 0.000000e+00 905.0
17 TraesCS1D01G092400 chr1B 84.010 813 115 13 1345 2148 123985505 123984699 0.000000e+00 767.0
18 TraesCS1D01G092400 chr1B 82.009 428 72 5 837 1260 123985983 123985557 4.260000e-95 359.0
19 TraesCS1D01G092400 chr5A 81.961 2794 383 66 808 3544 617255090 617252361 0.000000e+00 2255.0
20 TraesCS1D01G092400 chr5A 95.247 547 19 3 238 777 707074053 707073507 0.000000e+00 859.0
21 TraesCS1D01G092400 chr5A 92.276 246 7 2 1 234 707074205 707073960 5.550000e-89 339.0
22 TraesCS1D01G092400 chr5A 86.992 246 20 2 1 234 52330677 52330432 2.660000e-67 267.0
23 TraesCS1D01G092400 chr5B 81.204 2958 391 88 807 3683 610664425 610661552 0.000000e+00 2230.0
24 TraesCS1D01G092400 chr5B 81.457 302 56 0 4006 4307 294762374 294762675 9.630000e-62 248.0
25 TraesCS1D01G092400 chrUn 83.527 2319 287 45 835 3106 246307961 246305691 0.000000e+00 2078.0
26 TraesCS1D01G092400 chrUn 83.441 2319 289 45 835 3106 217766783 217764513 0.000000e+00 2067.0
27 TraesCS1D01G092400 chrUn 84.351 1719 198 33 1434 3106 260127325 260129018 0.000000e+00 1618.0
28 TraesCS1D01G092400 chrUn 84.051 1718 205 27 1434 3106 313905592 313907285 0.000000e+00 1591.0
29 TraesCS1D01G092400 chrUn 82.804 1733 234 27 835 2536 255506961 255505262 0.000000e+00 1491.0
30 TraesCS1D01G092400 chrUn 89.427 454 39 5 3106 3554 217764395 217763946 8.420000e-157 564.0
31 TraesCS1D01G092400 chrUn 89.427 454 39 5 3106 3554 246305573 246305124 8.420000e-157 564.0
32 TraesCS1D01G092400 chrUn 89.278 457 40 5 3103 3554 313907400 313907852 8.420000e-157 564.0
33 TraesCS1D01G092400 chrUn 89.427 454 39 5 3106 3554 327119288 327118839 8.420000e-157 564.0
34 TraesCS1D01G092400 chrUn 84.615 481 61 10 238 717 43071769 43071301 2.440000e-127 466.0
35 TraesCS1D01G092400 chrUn 86.179 246 22 2 1 234 43071921 43071676 5.750000e-64 255.0
36 TraesCS1D01G092400 chrUn 85.772 246 23 2 1 234 82620474 82620229 2.680000e-62 250.0
37 TraesCS1D01G092400 chrUn 85.772 246 23 2 1 234 361446436 361446191 2.680000e-62 250.0
38 TraesCS1D01G092400 chr6B 84.404 1930 198 51 1897 3797 3824637 3822782 0.000000e+00 1801.0
39 TraesCS1D01G092400 chr6B 89.278 457 40 5 3103 3554 4406715 4407167 8.420000e-157 564.0
40 TraesCS1D01G092400 chr6B 80.268 745 114 18 808 1548 3825385 3824670 8.540000e-147 531.0
41 TraesCS1D01G092400 chr2D 82.971 1656 222 42 980 2606 640044893 640043269 0.000000e+00 1441.0
42 TraesCS1D01G092400 chr2D 86.798 1015 124 7 2548 3557 640043205 640042196 0.000000e+00 1123.0
43 TraesCS1D01G092400 chr2D 82.552 1301 202 13 809 2104 179661514 179662794 0.000000e+00 1122.0
44 TraesCS1D01G092400 chr2D 85.688 552 58 15 238 777 226627189 226626647 3.030000e-156 562.0
45 TraesCS1D01G092400 chr2D 87.805 246 17 3 1 234 226627340 226627096 4.420000e-70 276.0
46 TraesCS1D01G092400 chr7B 94.061 522 22 8 238 757 693790934 693791448 0.000000e+00 784.0
47 TraesCS1D01G092400 chr7B 91.463 246 9 1 1 234 693790782 693791027 1.200000e-85 327.0
48 TraesCS1D01G092400 chr2A 85.600 625 73 8 809 1432 194122253 194122861 1.360000e-179 640.0
49 TraesCS1D01G092400 chr2A 82.913 515 74 10 238 748 26787962 26788466 6.840000e-123 451.0
50 TraesCS1D01G092400 chr7A 84.496 516 65 12 238 749 21842477 21842981 3.110000e-136 496.0
51 TraesCS1D01G092400 chr7A 83.544 79 11 2 4047 4124 33895527 33895450 6.220000e-09 73.1
52 TraesCS1D01G092400 chr5D 93.311 299 20 0 4006 4304 452854303 452854601 4.110000e-120 442.0
53 TraesCS1D01G092400 chr5D 84.746 177 16 6 4316 4482 452854957 452855132 2.770000e-37 167.0
54 TraesCS1D01G092400 chr4B 93.046 302 21 0 4006 4307 45198479 45198780 4.110000e-120 442.0
55 TraesCS1D01G092400 chr4B 85.965 114 6 5 4378 4482 45199176 45199288 3.660000e-21 113.0
56 TraesCS1D01G092400 chr3A 82.816 483 72 11 238 717 701147088 701147562 5.360000e-114 422.0
57 TraesCS1D01G092400 chr7D 92.276 246 7 2 1 234 487741873 487741628 5.550000e-89 339.0
58 TraesCS1D01G092400 chr3B 90.164 244 12 2 1 232 359221607 359221850 1.570000e-79 307.0
59 TraesCS1D01G092400 chr3B 82.838 303 50 2 4006 4307 755302739 755302438 2.050000e-68 270.0
60 TraesCS1D01G092400 chr3B 88.462 104 12 0 131 234 670700371 670700268 4.710000e-25 126.0
61 TraesCS1D01G092400 chr3B 82.727 110 9 5 4383 4482 78629173 78629282 6.180000e-14 89.8
62 TraesCS1D01G092400 chr6D 86.585 246 21 2 1 234 459379721 459379966 1.240000e-65 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G092400 chr1D 78979387 78983868 4481 True 4220.0 8277 98.936000 1 4482 2 chr1D.!!$R1 4481
1 TraesCS1D01G092400 chr1D 19110589 19111133 544 False 564.0 564 85.740000 238 777 1 chr1D.!!$F1 539
2 TraesCS1D01G092400 chr1A 96462807 96465596 2789 False 1551.0 1862 87.082500 778 3603 2 chr1A.!!$F2 2825
3 TraesCS1D01G092400 chr1A 96470623 96473895 3272 False 1376.0 2880 90.365333 778 4011 3 chr1A.!!$F3 3233
4 TraesCS1D01G092400 chr6A 571805 574499 2694 True 2654.0 2654 84.806000 808 3482 1 chr6A.!!$R1 2674
5 TraesCS1D01G092400 chr6A 1411840 1413630 1790 False 470.5 656 86.919500 1926 3816 2 chr6A.!!$F2 1890
6 TraesCS1D01G092400 chr1B 123964605 123967776 3171 True 2257.5 2446 92.321000 779 4008 2 chr1B.!!$R2 3229
7 TraesCS1D01G092400 chr1B 123973480 123974228 748 True 905.0 905 88.669000 2385 3132 1 chr1B.!!$R1 747
8 TraesCS1D01G092400 chr1B 123984699 123985983 1284 True 563.0 767 83.009500 837 2148 2 chr1B.!!$R3 1311
9 TraesCS1D01G092400 chr5A 617252361 617255090 2729 True 2255.0 2255 81.961000 808 3544 1 chr5A.!!$R2 2736
10 TraesCS1D01G092400 chr5A 707073507 707074205 698 True 599.0 859 93.761500 1 777 2 chr5A.!!$R3 776
11 TraesCS1D01G092400 chr5B 610661552 610664425 2873 True 2230.0 2230 81.204000 807 3683 1 chr5B.!!$R1 2876
12 TraesCS1D01G092400 chrUn 260127325 260129018 1693 False 1618.0 1618 84.351000 1434 3106 1 chrUn.!!$F1 1672
13 TraesCS1D01G092400 chrUn 255505262 255506961 1699 True 1491.0 1491 82.804000 835 2536 1 chrUn.!!$R2 1701
14 TraesCS1D01G092400 chrUn 246305124 246307961 2837 True 1321.0 2078 86.477000 835 3554 2 chrUn.!!$R7 2719
15 TraesCS1D01G092400 chrUn 217763946 217766783 2837 True 1315.5 2067 86.434000 835 3554 2 chrUn.!!$R6 2719
16 TraesCS1D01G092400 chrUn 313905592 313907852 2260 False 1077.5 1591 86.664500 1434 3554 2 chrUn.!!$F2 2120
17 TraesCS1D01G092400 chrUn 43071301 43071921 620 True 360.5 466 85.397000 1 717 2 chrUn.!!$R5 716
18 TraesCS1D01G092400 chr6B 3822782 3825385 2603 True 1166.0 1801 82.336000 808 3797 2 chr6B.!!$R1 2989
19 TraesCS1D01G092400 chr2D 640042196 640044893 2697 True 1282.0 1441 84.884500 980 3557 2 chr2D.!!$R2 2577
20 TraesCS1D01G092400 chr2D 179661514 179662794 1280 False 1122.0 1122 82.552000 809 2104 1 chr2D.!!$F1 1295
21 TraesCS1D01G092400 chr2D 226626647 226627340 693 True 419.0 562 86.746500 1 777 2 chr2D.!!$R1 776
22 TraesCS1D01G092400 chr7B 693790782 693791448 666 False 555.5 784 92.762000 1 757 2 chr7B.!!$F1 756
23 TraesCS1D01G092400 chr2A 194122253 194122861 608 False 640.0 640 85.600000 809 1432 1 chr2A.!!$F2 623
24 TraesCS1D01G092400 chr2A 26787962 26788466 504 False 451.0 451 82.913000 238 748 1 chr2A.!!$F1 510
25 TraesCS1D01G092400 chr7A 21842477 21842981 504 False 496.0 496 84.496000 238 749 1 chr7A.!!$F1 511
26 TraesCS1D01G092400 chr5D 452854303 452855132 829 False 304.5 442 89.028500 4006 4482 2 chr5D.!!$F1 476
27 TraesCS1D01G092400 chr4B 45198479 45199288 809 False 277.5 442 89.505500 4006 4482 2 chr4B.!!$F1 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 447 0.034477 AGGTAATTGCCCCGGTGAAG 60.034 55.0 9.2 0.0 0.00 3.02 F
469 482 0.035056 AATGAGAGGGAAAGCGGTGG 60.035 55.0 0.0 0.0 0.00 4.61 F
724 737 0.036952 CTCACGCAACACCAGATCCT 60.037 55.0 0.0 0.0 0.00 3.24 F
728 741 0.249120 CGCAACACCAGATCCTACCA 59.751 55.0 0.0 0.0 0.00 3.25 F
1096 1129 0.251341 AGAGCATCCCACAAACACCC 60.251 55.0 0.0 0.0 33.66 4.61 F
2601 2936 0.249447 GCCAAGTGCCACCAAACTTC 60.249 55.0 0.0 0.0 34.41 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 1838 0.247736 ACCTGACATTCGTGAGAGCC 59.752 55.0 0.00 0.00 43.69 4.70 R
1827 1906 0.393820 CATGCCAAACAAAGCACCCT 59.606 50.0 0.00 0.00 42.84 4.34 R
2582 2796 0.249447 GAAGTTTGGTGGCACTTGGC 60.249 55.0 18.45 6.18 43.74 4.52 R
2583 2797 0.389025 GGAAGTTTGGTGGCACTTGG 59.611 55.0 18.45 0.00 33.22 3.61 R
2737 3091 1.719529 TTCAGGTCCCGGTGAACTAA 58.280 50.0 9.79 0.00 39.72 2.24 R
4314 5662 0.036388 ATCGATCTTGCACCGTTGGT 60.036 50.0 0.00 0.00 35.62 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 180 1.709578 TCAGCACCTGAGAGTCTTGT 58.290 50.000 0.00 0.00 35.39 3.16
227 240 1.246056 GCTTGCCATCCTTGTCAGCA 61.246 55.000 0.00 0.00 0.00 4.41
228 241 1.250328 CTTGCCATCCTTGTCAGCAA 58.750 50.000 0.00 0.00 40.89 3.91
255 268 0.108472 CGATGAAGCTCAGCACCTGA 60.108 55.000 0.00 0.00 38.25 3.86
270 283 1.291588 CTGAGAGTCTTGCGCCAGT 59.708 57.895 4.18 0.00 0.00 4.00
291 304 2.514592 ATGAGATGCGCCGGGTTG 60.515 61.111 4.18 0.00 0.00 3.77
312 325 2.115052 ACATCGGTTGGCTTGCCA 59.885 55.556 10.65 10.65 0.00 4.92
313 326 1.304381 ACATCGGTTGGCTTGCCAT 60.304 52.632 15.58 0.00 0.00 4.40
314 327 1.315257 ACATCGGTTGGCTTGCCATC 61.315 55.000 15.58 14.03 0.00 3.51
315 328 1.754234 ATCGGTTGGCTTGCCATCC 60.754 57.895 24.50 24.50 0.00 3.51
316 329 2.215451 ATCGGTTGGCTTGCCATCCT 62.215 55.000 28.58 15.42 0.00 3.24
317 330 1.978617 CGGTTGGCTTGCCATCCTT 60.979 57.895 28.58 0.00 0.00 3.36
318 331 1.593265 GGTTGGCTTGCCATCCTTG 59.407 57.895 26.15 0.00 0.00 3.61
319 332 1.079612 GTTGGCTTGCCATCCTTGC 60.080 57.895 15.58 0.00 0.00 4.01
320 333 2.285024 TTGGCTTGCCATCCTTGCC 61.285 57.895 15.58 0.00 43.49 4.52
321 334 2.681064 GGCTTGCCATCCTTGCCA 60.681 61.111 6.79 0.00 42.79 4.92
322 335 2.718073 GGCTTGCCATCCTTGCCAG 61.718 63.158 6.79 0.00 42.79 4.85
323 336 2.890371 CTTGCCATCCTTGCCAGC 59.110 61.111 0.00 0.00 0.00 4.85
365 378 1.221021 GATCGGGGTTGAGGTGGTC 59.779 63.158 0.00 0.00 0.00 4.02
402 415 2.928396 ACGGTGGCTAGGGCTTGT 60.928 61.111 0.00 0.00 38.73 3.16
403 416 2.436646 CGGTGGCTAGGGCTTGTG 60.437 66.667 0.00 0.00 38.73 3.33
404 417 2.751837 GGTGGCTAGGGCTTGTGC 60.752 66.667 0.00 0.00 38.73 4.57
405 418 3.127533 GTGGCTAGGGCTTGTGCG 61.128 66.667 0.00 0.00 40.82 5.34
421 434 2.435938 CGCGCCACACCAGGTAAT 60.436 61.111 0.00 0.00 0.00 1.89
422 435 2.038269 CGCGCCACACCAGGTAATT 61.038 57.895 0.00 0.00 0.00 1.40
423 436 1.506262 GCGCCACACCAGGTAATTG 59.494 57.895 0.00 0.00 0.00 2.32
424 437 1.506262 CGCCACACCAGGTAATTGC 59.494 57.895 0.00 0.00 0.00 3.56
425 438 1.890174 GCCACACCAGGTAATTGCC 59.110 57.895 4.07 4.07 0.00 4.52
426 439 1.604147 GCCACACCAGGTAATTGCCC 61.604 60.000 9.20 0.00 0.00 5.36
427 440 0.970427 CCACACCAGGTAATTGCCCC 60.970 60.000 9.20 0.00 0.00 5.80
428 441 1.001393 ACACCAGGTAATTGCCCCG 60.001 57.895 9.20 1.97 0.00 5.73
429 442 1.752694 CACCAGGTAATTGCCCCGG 60.753 63.158 14.80 14.80 0.00 5.73
430 443 2.235761 ACCAGGTAATTGCCCCGGT 61.236 57.895 15.92 15.92 31.97 5.28
431 444 1.752694 CCAGGTAATTGCCCCGGTG 60.753 63.158 9.20 0.77 0.00 4.94
432 445 1.301623 CAGGTAATTGCCCCGGTGA 59.698 57.895 9.20 0.00 0.00 4.02
433 446 0.322997 CAGGTAATTGCCCCGGTGAA 60.323 55.000 9.20 0.00 0.00 3.18
434 447 0.034477 AGGTAATTGCCCCGGTGAAG 60.034 55.000 9.20 0.00 0.00 3.02
435 448 1.663379 GGTAATTGCCCCGGTGAAGC 61.663 60.000 0.16 0.00 0.00 3.86
436 449 0.679960 GTAATTGCCCCGGTGAAGCT 60.680 55.000 0.00 0.00 0.00 3.74
437 450 0.039035 TAATTGCCCCGGTGAAGCTT 59.961 50.000 0.00 0.00 0.00 3.74
438 451 1.535204 AATTGCCCCGGTGAAGCTTG 61.535 55.000 2.10 0.00 0.00 4.01
439 452 2.713531 ATTGCCCCGGTGAAGCTTGT 62.714 55.000 2.10 0.00 0.00 3.16
440 453 3.056328 GCCCCGGTGAAGCTTGTC 61.056 66.667 2.10 0.00 0.00 3.18
441 454 2.429930 CCCCGGTGAAGCTTGTCA 59.570 61.111 2.10 0.00 0.00 3.58
442 455 1.672356 CCCCGGTGAAGCTTGTCAG 60.672 63.158 2.10 0.00 0.00 3.51
451 464 4.301505 GCTTGTCAGCGATGGGAA 57.698 55.556 0.00 0.00 35.91 3.97
452 465 2.785868 GCTTGTCAGCGATGGGAAT 58.214 52.632 0.00 0.00 35.91 3.01
453 466 0.379669 GCTTGTCAGCGATGGGAATG 59.620 55.000 0.00 0.00 35.91 2.67
454 467 2.013563 GCTTGTCAGCGATGGGAATGA 61.014 52.381 0.00 0.00 35.91 2.57
455 468 1.938577 CTTGTCAGCGATGGGAATGAG 59.061 52.381 0.00 0.00 0.00 2.90
456 469 1.194218 TGTCAGCGATGGGAATGAGA 58.806 50.000 0.00 0.00 0.00 3.27
457 470 1.137675 TGTCAGCGATGGGAATGAGAG 59.862 52.381 0.00 0.00 0.00 3.20
458 471 0.755079 TCAGCGATGGGAATGAGAGG 59.245 55.000 0.00 0.00 0.00 3.69
459 472 0.250209 CAGCGATGGGAATGAGAGGG 60.250 60.000 0.00 0.00 0.00 4.30
460 473 0.399091 AGCGATGGGAATGAGAGGGA 60.399 55.000 0.00 0.00 0.00 4.20
461 474 0.469917 GCGATGGGAATGAGAGGGAA 59.530 55.000 0.00 0.00 0.00 3.97
462 475 1.134098 GCGATGGGAATGAGAGGGAAA 60.134 52.381 0.00 0.00 0.00 3.13
463 476 2.843701 CGATGGGAATGAGAGGGAAAG 58.156 52.381 0.00 0.00 0.00 2.62
464 477 2.580962 GATGGGAATGAGAGGGAAAGC 58.419 52.381 0.00 0.00 0.00 3.51
465 478 0.253044 TGGGAATGAGAGGGAAAGCG 59.747 55.000 0.00 0.00 0.00 4.68
466 479 0.464554 GGGAATGAGAGGGAAAGCGG 60.465 60.000 0.00 0.00 0.00 5.52
467 480 0.253327 GGAATGAGAGGGAAAGCGGT 59.747 55.000 0.00 0.00 0.00 5.68
468 481 1.373570 GAATGAGAGGGAAAGCGGTG 58.626 55.000 0.00 0.00 0.00 4.94
469 482 0.035056 AATGAGAGGGAAAGCGGTGG 60.035 55.000 0.00 0.00 0.00 4.61
470 483 2.436824 GAGAGGGAAAGCGGTGGC 60.437 66.667 0.00 0.00 40.37 5.01
471 484 4.394712 AGAGGGAAAGCGGTGGCG 62.395 66.667 0.00 0.00 46.35 5.69
494 507 4.247380 GGCGCTGGAGCTAGCCAT 62.247 66.667 12.13 0.00 43.88 4.40
495 508 2.971413 GCGCTGGAGCTAGCCATG 60.971 66.667 12.13 0.47 40.59 3.66
496 509 2.503061 CGCTGGAGCTAGCCATGT 59.497 61.111 12.13 0.00 40.59 3.21
497 510 1.153289 CGCTGGAGCTAGCCATGTT 60.153 57.895 12.13 0.00 40.59 2.71
498 511 0.745845 CGCTGGAGCTAGCCATGTTT 60.746 55.000 12.13 0.00 40.59 2.83
499 512 1.473257 CGCTGGAGCTAGCCATGTTTA 60.473 52.381 12.13 0.00 40.59 2.01
500 513 2.216898 GCTGGAGCTAGCCATGTTTAG 58.783 52.381 12.13 1.95 37.30 1.85
501 514 2.843701 CTGGAGCTAGCCATGTTTAGG 58.156 52.381 12.13 0.00 37.30 2.69
502 515 1.490490 TGGAGCTAGCCATGTTTAGGG 59.510 52.381 12.13 0.00 31.66 3.53
503 516 1.490910 GGAGCTAGCCATGTTTAGGGT 59.509 52.381 12.13 0.00 40.53 4.34
504 517 2.092375 GGAGCTAGCCATGTTTAGGGTT 60.092 50.000 12.13 0.00 38.04 4.11
505 518 2.945668 GAGCTAGCCATGTTTAGGGTTG 59.054 50.000 12.13 0.00 38.04 3.77
506 519 2.024414 GCTAGCCATGTTTAGGGTTGG 58.976 52.381 2.29 0.00 38.04 3.77
507 520 2.356741 GCTAGCCATGTTTAGGGTTGGA 60.357 50.000 2.29 0.00 38.04 3.53
508 521 3.688414 GCTAGCCATGTTTAGGGTTGGAT 60.688 47.826 2.29 0.00 38.04 3.41
509 522 2.738743 AGCCATGTTTAGGGTTGGATG 58.261 47.619 0.00 0.00 31.69 3.51
510 523 2.042979 AGCCATGTTTAGGGTTGGATGT 59.957 45.455 0.00 0.00 31.69 3.06
511 524 2.831526 GCCATGTTTAGGGTTGGATGTT 59.168 45.455 0.00 0.00 0.00 2.71
512 525 3.368323 GCCATGTTTAGGGTTGGATGTTG 60.368 47.826 0.00 0.00 0.00 3.33
513 526 3.195396 CCATGTTTAGGGTTGGATGTTGG 59.805 47.826 0.00 0.00 0.00 3.77
514 527 3.885976 TGTTTAGGGTTGGATGTTGGA 57.114 42.857 0.00 0.00 0.00 3.53
515 528 3.761897 TGTTTAGGGTTGGATGTTGGAG 58.238 45.455 0.00 0.00 0.00 3.86
516 529 3.396276 TGTTTAGGGTTGGATGTTGGAGA 59.604 43.478 0.00 0.00 0.00 3.71
517 530 4.010349 GTTTAGGGTTGGATGTTGGAGAG 58.990 47.826 0.00 0.00 0.00 3.20
518 531 2.044793 AGGGTTGGATGTTGGAGAGA 57.955 50.000 0.00 0.00 0.00 3.10
519 532 2.348472 AGGGTTGGATGTTGGAGAGAA 58.652 47.619 0.00 0.00 0.00 2.87
520 533 2.716424 AGGGTTGGATGTTGGAGAGAAA 59.284 45.455 0.00 0.00 0.00 2.52
521 534 3.084786 GGGTTGGATGTTGGAGAGAAAG 58.915 50.000 0.00 0.00 0.00 2.62
522 535 3.498661 GGGTTGGATGTTGGAGAGAAAGT 60.499 47.826 0.00 0.00 0.00 2.66
523 536 4.263331 GGGTTGGATGTTGGAGAGAAAGTA 60.263 45.833 0.00 0.00 0.00 2.24
524 537 4.938226 GGTTGGATGTTGGAGAGAAAGTAG 59.062 45.833 0.00 0.00 0.00 2.57
525 538 4.826274 TGGATGTTGGAGAGAAAGTAGG 57.174 45.455 0.00 0.00 0.00 3.18
526 539 3.055094 TGGATGTTGGAGAGAAAGTAGGC 60.055 47.826 0.00 0.00 0.00 3.93
527 540 3.198853 GGATGTTGGAGAGAAAGTAGGCT 59.801 47.826 0.00 0.00 0.00 4.58
528 541 3.963428 TGTTGGAGAGAAAGTAGGCTC 57.037 47.619 0.00 0.00 0.00 4.70
529 542 3.511477 TGTTGGAGAGAAAGTAGGCTCT 58.489 45.455 0.00 0.00 43.78 4.09
530 543 3.259374 TGTTGGAGAGAAAGTAGGCTCTG 59.741 47.826 0.00 0.00 41.33 3.35
531 544 3.458044 TGGAGAGAAAGTAGGCTCTGA 57.542 47.619 0.00 0.00 41.33 3.27
532 545 3.779444 TGGAGAGAAAGTAGGCTCTGAA 58.221 45.455 0.00 0.00 41.33 3.02
533 546 4.357325 TGGAGAGAAAGTAGGCTCTGAAT 58.643 43.478 0.00 0.00 41.33 2.57
534 547 5.519808 TGGAGAGAAAGTAGGCTCTGAATA 58.480 41.667 0.00 0.00 41.33 1.75
535 548 5.361285 TGGAGAGAAAGTAGGCTCTGAATAC 59.639 44.000 0.00 0.00 41.33 1.89
536 549 5.221362 GGAGAGAAAGTAGGCTCTGAATACC 60.221 48.000 0.00 0.00 41.33 2.73
537 550 5.273208 AGAGAAAGTAGGCTCTGAATACCA 58.727 41.667 0.00 0.00 39.86 3.25
538 551 5.902431 AGAGAAAGTAGGCTCTGAATACCAT 59.098 40.000 0.00 0.00 39.86 3.55
539 552 5.923204 AGAAAGTAGGCTCTGAATACCATG 58.077 41.667 0.00 0.00 0.00 3.66
540 553 5.663106 AGAAAGTAGGCTCTGAATACCATGA 59.337 40.000 0.00 0.00 0.00 3.07
541 554 5.957771 AAGTAGGCTCTGAATACCATGAA 57.042 39.130 0.00 0.00 0.00 2.57
542 555 5.957771 AGTAGGCTCTGAATACCATGAAA 57.042 39.130 0.00 0.00 0.00 2.69
543 556 5.923204 AGTAGGCTCTGAATACCATGAAAG 58.077 41.667 0.00 0.00 0.00 2.62
544 557 5.663106 AGTAGGCTCTGAATACCATGAAAGA 59.337 40.000 0.00 0.00 0.00 2.52
545 558 5.441718 AGGCTCTGAATACCATGAAAGAA 57.558 39.130 0.00 0.00 0.00 2.52
546 559 6.011122 AGGCTCTGAATACCATGAAAGAAT 57.989 37.500 0.00 0.00 0.00 2.40
547 560 7.141758 AGGCTCTGAATACCATGAAAGAATA 57.858 36.000 0.00 0.00 0.00 1.75
548 561 7.222872 AGGCTCTGAATACCATGAAAGAATAG 58.777 38.462 0.00 0.00 0.00 1.73
549 562 6.429385 GGCTCTGAATACCATGAAAGAATAGG 59.571 42.308 0.00 0.00 0.00 2.57
550 563 6.995091 GCTCTGAATACCATGAAAGAATAGGT 59.005 38.462 0.00 0.00 36.40 3.08
551 564 7.500559 GCTCTGAATACCATGAAAGAATAGGTT 59.499 37.037 0.00 0.00 33.91 3.50
552 565 8.737168 TCTGAATACCATGAAAGAATAGGTTG 57.263 34.615 0.00 0.00 33.91 3.77
553 566 8.548025 TCTGAATACCATGAAAGAATAGGTTGA 58.452 33.333 0.00 0.00 33.91 3.18
554 567 9.177608 CTGAATACCATGAAAGAATAGGTTGAA 57.822 33.333 0.00 0.00 33.91 2.69
555 568 9.177608 TGAATACCATGAAAGAATAGGTTGAAG 57.822 33.333 0.00 0.00 33.91 3.02
556 569 5.904362 ACCATGAAAGAATAGGTTGAAGC 57.096 39.130 0.00 0.00 0.00 3.86
557 570 4.396166 ACCATGAAAGAATAGGTTGAAGCG 59.604 41.667 0.00 0.00 0.00 4.68
558 571 4.396166 CCATGAAAGAATAGGTTGAAGCGT 59.604 41.667 0.00 0.00 0.00 5.07
559 572 5.584649 CCATGAAAGAATAGGTTGAAGCGTA 59.415 40.000 0.00 0.00 0.00 4.42
560 573 6.260936 CCATGAAAGAATAGGTTGAAGCGTAT 59.739 38.462 0.00 0.00 0.00 3.06
561 574 6.662414 TGAAAGAATAGGTTGAAGCGTATG 57.338 37.500 0.00 0.00 0.00 2.39
562 575 5.064707 TGAAAGAATAGGTTGAAGCGTATGC 59.935 40.000 0.00 0.00 43.24 3.14
563 576 3.467803 AGAATAGGTTGAAGCGTATGCC 58.532 45.455 2.51 0.00 44.31 4.40
564 577 3.134804 AGAATAGGTTGAAGCGTATGCCT 59.865 43.478 2.51 0.00 44.31 4.75
565 578 2.596904 TAGGTTGAAGCGTATGCCTC 57.403 50.000 2.51 0.12 44.31 4.70
566 579 0.905357 AGGTTGAAGCGTATGCCTCT 59.095 50.000 2.51 0.00 44.31 3.69
567 580 1.009829 GGTTGAAGCGTATGCCTCTG 58.990 55.000 2.51 0.00 44.31 3.35
568 581 1.009829 GTTGAAGCGTATGCCTCTGG 58.990 55.000 2.51 0.00 44.31 3.86
595 608 0.438830 GCGCTGCGTGTTATATAGGC 59.561 55.000 24.04 0.00 0.00 3.93
596 609 1.778334 CGCTGCGTGTTATATAGGCA 58.222 50.000 14.93 5.23 37.38 4.75
597 610 2.337583 CGCTGCGTGTTATATAGGCAT 58.662 47.619 14.93 0.00 38.14 4.40
598 611 2.345641 CGCTGCGTGTTATATAGGCATC 59.654 50.000 14.93 2.28 38.14 3.91
599 612 2.345641 GCTGCGTGTTATATAGGCATCG 59.654 50.000 5.65 0.00 38.14 3.84
600 613 3.833442 CTGCGTGTTATATAGGCATCGA 58.167 45.455 0.00 0.00 38.14 3.59
601 614 3.571571 TGCGTGTTATATAGGCATCGAC 58.428 45.455 0.00 0.00 34.42 4.20
602 615 3.004944 TGCGTGTTATATAGGCATCGACA 59.995 43.478 0.00 0.00 34.42 4.35
603 616 3.608506 GCGTGTTATATAGGCATCGACAG 59.391 47.826 0.00 0.00 0.00 3.51
604 617 4.615223 GCGTGTTATATAGGCATCGACAGA 60.615 45.833 0.00 0.00 0.00 3.41
605 618 5.641709 CGTGTTATATAGGCATCGACAGAT 58.358 41.667 0.00 0.00 37.65 2.90
606 619 6.093404 CGTGTTATATAGGCATCGACAGATT 58.907 40.000 0.00 0.00 34.23 2.40
607 620 7.248437 CGTGTTATATAGGCATCGACAGATTA 58.752 38.462 0.00 0.00 34.23 1.75
608 621 7.915923 CGTGTTATATAGGCATCGACAGATTAT 59.084 37.037 0.00 0.00 34.23 1.28
611 624 9.900710 GTTATATAGGCATCGACAGATTATAGG 57.099 37.037 0.00 0.00 34.23 2.57
612 625 5.860941 ATAGGCATCGACAGATTATAGGG 57.139 43.478 0.00 0.00 34.23 3.53
613 626 3.511477 AGGCATCGACAGATTATAGGGT 58.489 45.455 0.00 0.00 34.23 4.34
614 627 3.904339 AGGCATCGACAGATTATAGGGTT 59.096 43.478 0.00 0.00 34.23 4.11
615 628 4.348168 AGGCATCGACAGATTATAGGGTTT 59.652 41.667 0.00 0.00 34.23 3.27
616 629 4.452455 GGCATCGACAGATTATAGGGTTTG 59.548 45.833 0.00 0.00 34.23 2.93
617 630 4.452455 GCATCGACAGATTATAGGGTTTGG 59.548 45.833 0.00 0.00 34.23 3.28
618 631 5.611374 CATCGACAGATTATAGGGTTTGGT 58.389 41.667 0.00 0.00 34.23 3.67
619 632 5.018539 TCGACAGATTATAGGGTTTGGTG 57.981 43.478 0.00 0.00 0.00 4.17
620 633 4.127171 CGACAGATTATAGGGTTTGGTGG 58.873 47.826 0.00 0.00 0.00 4.61
621 634 4.383770 CGACAGATTATAGGGTTTGGTGGT 60.384 45.833 0.00 0.00 0.00 4.16
622 635 5.506708 GACAGATTATAGGGTTTGGTGGTT 58.493 41.667 0.00 0.00 0.00 3.67
623 636 5.506708 ACAGATTATAGGGTTTGGTGGTTC 58.493 41.667 0.00 0.00 0.00 3.62
624 637 4.574828 CAGATTATAGGGTTTGGTGGTTCG 59.425 45.833 0.00 0.00 0.00 3.95
625 638 3.353370 TTATAGGGTTTGGTGGTTCGG 57.647 47.619 0.00 0.00 0.00 4.30
626 639 1.069775 ATAGGGTTTGGTGGTTCGGT 58.930 50.000 0.00 0.00 0.00 4.69
627 640 1.727062 TAGGGTTTGGTGGTTCGGTA 58.273 50.000 0.00 0.00 0.00 4.02
628 641 0.399075 AGGGTTTGGTGGTTCGGTAG 59.601 55.000 0.00 0.00 0.00 3.18
629 642 0.397564 GGGTTTGGTGGTTCGGTAGA 59.602 55.000 0.00 0.00 0.00 2.59
630 643 1.609841 GGGTTTGGTGGTTCGGTAGAG 60.610 57.143 0.00 0.00 0.00 2.43
631 644 1.154197 GTTTGGTGGTTCGGTAGAGC 58.846 55.000 0.00 0.00 0.00 4.09
632 645 1.053424 TTTGGTGGTTCGGTAGAGCT 58.947 50.000 0.00 0.00 0.00 4.09
633 646 0.320374 TTGGTGGTTCGGTAGAGCTG 59.680 55.000 0.00 0.00 0.00 4.24
634 647 1.218316 GGTGGTTCGGTAGAGCTGG 59.782 63.158 0.00 0.00 0.00 4.85
635 648 1.255667 GGTGGTTCGGTAGAGCTGGA 61.256 60.000 0.00 0.00 0.00 3.86
636 649 0.824759 GTGGTTCGGTAGAGCTGGAT 59.175 55.000 0.00 0.00 0.00 3.41
637 650 1.207329 GTGGTTCGGTAGAGCTGGATT 59.793 52.381 0.00 0.00 0.00 3.01
638 651 1.207089 TGGTTCGGTAGAGCTGGATTG 59.793 52.381 0.00 0.00 0.00 2.67
639 652 1.480954 GGTTCGGTAGAGCTGGATTGA 59.519 52.381 0.00 0.00 0.00 2.57
640 653 2.103263 GGTTCGGTAGAGCTGGATTGAT 59.897 50.000 0.00 0.00 0.00 2.57
641 654 3.385577 GTTCGGTAGAGCTGGATTGATC 58.614 50.000 0.00 0.00 0.00 2.92
659 672 9.396022 GGATTGATCCTCAAGAAAAGTTATACA 57.604 33.333 2.72 0.00 40.05 2.29
666 679 9.658799 TCCTCAAGAAAAGTTATACAAGATGAG 57.341 33.333 0.00 0.00 0.00 2.90
667 680 8.887717 CCTCAAGAAAAGTTATACAAGATGAGG 58.112 37.037 0.00 0.00 41.96 3.86
668 681 9.658799 CTCAAGAAAAGTTATACAAGATGAGGA 57.341 33.333 0.00 0.00 0.00 3.71
691 704 7.448420 GGATAAATCCTAACTACCTAACCACC 58.552 42.308 1.52 0.00 43.73 4.61
692 705 7.291885 GGATAAATCCTAACTACCTAACCACCT 59.708 40.741 1.52 0.00 43.73 4.00
693 706 5.952347 AATCCTAACTACCTAACCACCTG 57.048 43.478 0.00 0.00 0.00 4.00
694 707 4.680278 TCCTAACTACCTAACCACCTGA 57.320 45.455 0.00 0.00 0.00 3.86
695 708 5.216665 TCCTAACTACCTAACCACCTGAT 57.783 43.478 0.00 0.00 0.00 2.90
696 709 5.596763 TCCTAACTACCTAACCACCTGATT 58.403 41.667 0.00 0.00 0.00 2.57
697 710 6.744822 TCCTAACTACCTAACCACCTGATTA 58.255 40.000 0.00 0.00 0.00 1.75
698 711 6.608808 TCCTAACTACCTAACCACCTGATTAC 59.391 42.308 0.00 0.00 0.00 1.89
699 712 6.381994 CCTAACTACCTAACCACCTGATTACA 59.618 42.308 0.00 0.00 0.00 2.41
700 713 6.691255 AACTACCTAACCACCTGATTACAA 57.309 37.500 0.00 0.00 0.00 2.41
701 714 6.886178 ACTACCTAACCACCTGATTACAAT 57.114 37.500 0.00 0.00 0.00 2.71
702 715 6.885922 ACTACCTAACCACCTGATTACAATC 58.114 40.000 0.00 0.00 35.97 2.67
703 716 5.772393 ACCTAACCACCTGATTACAATCA 57.228 39.130 4.66 4.66 42.78 2.57
704 717 6.134535 ACCTAACCACCTGATTACAATCAA 57.865 37.500 6.15 0.00 44.20 2.57
705 718 5.944007 ACCTAACCACCTGATTACAATCAAC 59.056 40.000 6.15 0.00 44.20 3.18
706 719 6.180472 CCTAACCACCTGATTACAATCAACT 58.820 40.000 6.15 0.00 44.20 3.16
707 720 6.316390 CCTAACCACCTGATTACAATCAACTC 59.684 42.308 6.15 0.00 44.20 3.01
708 721 5.241403 ACCACCTGATTACAATCAACTCA 57.759 39.130 6.15 0.00 44.20 3.41
709 722 5.003804 ACCACCTGATTACAATCAACTCAC 58.996 41.667 6.15 0.00 44.20 3.51
710 723 4.093408 CCACCTGATTACAATCAACTCACG 59.907 45.833 6.15 0.00 44.20 4.35
711 724 3.684788 ACCTGATTACAATCAACTCACGC 59.315 43.478 6.15 0.00 44.20 5.34
712 725 3.684305 CCTGATTACAATCAACTCACGCA 59.316 43.478 6.15 0.00 44.20 5.24
713 726 4.154015 CCTGATTACAATCAACTCACGCAA 59.846 41.667 6.15 0.00 44.20 4.85
714 727 5.029650 TGATTACAATCAACTCACGCAAC 57.970 39.130 2.15 0.00 42.11 4.17
715 728 4.513318 TGATTACAATCAACTCACGCAACA 59.487 37.500 2.15 0.00 42.11 3.33
716 729 2.755836 ACAATCAACTCACGCAACAC 57.244 45.000 0.00 0.00 0.00 3.32
717 730 1.333619 ACAATCAACTCACGCAACACC 59.666 47.619 0.00 0.00 0.00 4.16
718 731 1.333308 CAATCAACTCACGCAACACCA 59.667 47.619 0.00 0.00 0.00 4.17
719 732 1.229428 ATCAACTCACGCAACACCAG 58.771 50.000 0.00 0.00 0.00 4.00
720 733 0.176910 TCAACTCACGCAACACCAGA 59.823 50.000 0.00 0.00 0.00 3.86
721 734 1.202639 TCAACTCACGCAACACCAGAT 60.203 47.619 0.00 0.00 0.00 2.90
722 735 1.195448 CAACTCACGCAACACCAGATC 59.805 52.381 0.00 0.00 0.00 2.75
723 736 0.320771 ACTCACGCAACACCAGATCC 60.321 55.000 0.00 0.00 0.00 3.36
724 737 0.036952 CTCACGCAACACCAGATCCT 60.037 55.000 0.00 0.00 0.00 3.24
725 738 1.204704 CTCACGCAACACCAGATCCTA 59.795 52.381 0.00 0.00 0.00 2.94
726 739 1.067142 TCACGCAACACCAGATCCTAC 60.067 52.381 0.00 0.00 0.00 3.18
727 740 0.249398 ACGCAACACCAGATCCTACC 59.751 55.000 0.00 0.00 0.00 3.18
728 741 0.249120 CGCAACACCAGATCCTACCA 59.751 55.000 0.00 0.00 0.00 3.25
729 742 1.740380 CGCAACACCAGATCCTACCAG 60.740 57.143 0.00 0.00 0.00 4.00
730 743 1.555075 GCAACACCAGATCCTACCAGA 59.445 52.381 0.00 0.00 0.00 3.86
731 744 2.171448 GCAACACCAGATCCTACCAGAT 59.829 50.000 0.00 0.00 0.00 2.90
732 745 3.801698 CAACACCAGATCCTACCAGATG 58.198 50.000 0.00 0.00 0.00 2.90
733 746 3.121929 ACACCAGATCCTACCAGATGT 57.878 47.619 0.00 0.00 0.00 3.06
734 747 4.265856 ACACCAGATCCTACCAGATGTA 57.734 45.455 0.00 0.00 0.00 2.29
735 748 4.820775 ACACCAGATCCTACCAGATGTAT 58.179 43.478 0.00 0.00 0.00 2.29
736 749 5.965486 ACACCAGATCCTACCAGATGTATA 58.035 41.667 0.00 0.00 0.00 1.47
737 750 6.565974 ACACCAGATCCTACCAGATGTATAT 58.434 40.000 0.00 0.00 0.00 0.86
738 751 7.709601 ACACCAGATCCTACCAGATGTATATA 58.290 38.462 0.00 0.00 0.00 0.86
739 752 7.616150 ACACCAGATCCTACCAGATGTATATAC 59.384 40.741 5.89 5.89 0.00 1.47
740 753 6.829298 ACCAGATCCTACCAGATGTATATACG 59.171 42.308 8.33 0.00 0.00 3.06
741 754 6.263392 CCAGATCCTACCAGATGTATATACGG 59.737 46.154 8.33 5.80 0.00 4.02
742 755 5.828859 AGATCCTACCAGATGTATATACGGC 59.171 44.000 8.33 2.95 0.00 5.68
743 756 5.188988 TCCTACCAGATGTATATACGGCT 57.811 43.478 8.33 5.13 0.00 5.52
744 757 5.577100 TCCTACCAGATGTATATACGGCTT 58.423 41.667 8.33 0.00 0.00 4.35
745 758 6.724351 TCCTACCAGATGTATATACGGCTTA 58.276 40.000 8.33 0.00 0.00 3.09
746 759 7.351952 TCCTACCAGATGTATATACGGCTTAT 58.648 38.462 8.33 0.00 0.00 1.73
747 760 8.496916 TCCTACCAGATGTATATACGGCTTATA 58.503 37.037 8.33 0.00 0.00 0.98
748 761 9.298250 CCTACCAGATGTATATACGGCTTATAT 57.702 37.037 8.33 8.38 37.22 0.86
763 776 8.322906 ACGGCTTATATAACTATACGTGTACA 57.677 34.615 0.00 0.00 0.00 2.90
764 777 8.783093 ACGGCTTATATAACTATACGTGTACAA 58.217 33.333 0.00 0.00 0.00 2.41
765 778 9.778993 CGGCTTATATAACTATACGTGTACAAT 57.221 33.333 0.00 0.00 0.00 2.71
786 799 3.876309 ACTTTCTAACACCCACCACAT 57.124 42.857 0.00 0.00 0.00 3.21
972 987 2.494445 CGGCAGCTATGGTCGACA 59.506 61.111 18.91 3.91 0.00 4.35
1096 1129 0.251341 AGAGCATCCCACAAACACCC 60.251 55.000 0.00 0.00 33.66 4.61
1283 1335 4.039092 CAGTGGCCCCTGGGACTG 62.039 72.222 16.20 16.13 45.59 3.51
1322 1377 2.809665 GCCTTATGCCAGAGATGACAGG 60.810 54.545 0.00 0.00 0.00 4.00
1448 1503 1.078918 CCGGACAGATCAAGCAGCA 60.079 57.895 0.00 0.00 0.00 4.41
1450 1505 1.088340 CGGACAGATCAAGCAGCAGG 61.088 60.000 0.00 0.00 0.00 4.85
1462 1520 2.057830 CAGCAGGTATGGGCGGATA 58.942 57.895 0.00 0.00 34.54 2.59
1477 1535 2.677037 GCGGATAACTTACAGCAGTGGT 60.677 50.000 0.00 0.00 0.00 4.16
1492 1550 1.026718 GTGGTTCTTGATCTGGGCCG 61.027 60.000 0.00 0.00 0.00 6.13
1530 1588 3.800261 GCGATGTGTATATGCTCTGTGGT 60.800 47.826 0.00 0.00 0.00 4.16
1548 1612 4.228097 GCATACGGCAGCTGCACG 62.228 66.667 37.63 35.21 44.36 5.34
1550 1614 3.770040 ATACGGCAGCTGCACGGA 61.770 61.111 35.88 32.59 44.36 4.69
1604 1671 2.147150 GTTCAGCCAGAAGGTTCAGAC 58.853 52.381 0.00 0.00 36.78 3.51
1685 1752 0.597637 ACCAACTCGACTTCTGCACG 60.598 55.000 0.00 0.00 0.00 5.34
1759 1838 1.376424 CAGGGTGCAGTGGCTACAG 60.376 63.158 2.02 0.00 41.91 2.74
1827 1906 6.293190 GCACTGCTTACACTTACAATTACACA 60.293 38.462 0.00 0.00 0.00 3.72
1881 1963 0.320374 TCCAAGAACAGTACAGCGGG 59.680 55.000 0.00 0.00 0.00 6.13
1933 2024 1.117749 AGCATCCGAGCTGCCAGATA 61.118 55.000 0.00 0.00 44.66 1.98
2030 2175 6.037786 TGTGTTGTTCTTTCTATCTCGGAT 57.962 37.500 0.00 0.00 0.00 4.18
2065 2242 4.130118 CAGGACTTTTCGGATATCCAAGG 58.870 47.826 21.70 11.70 35.14 3.61
2184 2364 2.414161 GGCTACAAATGACTTTGGCGAC 60.414 50.000 3.42 0.00 44.97 5.19
2493 2693 6.663093 TGTATGAATTTATGCCCAACAGAAGT 59.337 34.615 0.00 0.00 29.63 3.01
2577 2791 0.882484 GGCCGAGCTTCAATAGGAGC 60.882 60.000 0.00 0.00 0.00 4.70
2582 2796 3.551863 CCGAGCTTCAATAGGAGCAGTAG 60.552 52.174 0.00 0.00 0.00 2.57
2583 2797 3.389221 GAGCTTCAATAGGAGCAGTAGC 58.611 50.000 0.00 0.00 42.56 3.58
2601 2936 0.249447 GCCAAGTGCCACCAAACTTC 60.249 55.000 0.00 0.00 34.41 3.01
2637 2991 7.483059 GCTGATACTTCTTGTTTAAATGCAGAC 59.517 37.037 0.00 0.00 0.00 3.51
2667 3021 1.747206 CGCAAAGACCTAGATTGGGGG 60.747 57.143 0.00 0.00 34.48 5.40
2737 3091 5.551233 TCCACGAAGATTCTCAATTGAAGT 58.449 37.500 9.88 0.00 0.00 3.01
3090 3550 7.140048 ACTCCGAGAAATATGTTTATCTCGTC 58.860 38.462 18.88 0.00 38.76 4.20
3458 4323 2.476185 GCGTCTTCAAATGGAATGACCG 60.476 50.000 0.00 0.00 42.61 4.79
3469 4334 4.074627 TGGAATGACCGTCACAAAACTA 57.925 40.909 2.57 0.00 42.61 2.24
3530 4432 9.884465 AGTTTGTACTAGTGTTACTTTACTACG 57.116 33.333 5.39 0.00 31.21 3.51
3531 4433 9.665264 GTTTGTACTAGTGTTACTTTACTACGT 57.335 33.333 5.39 0.00 0.00 3.57
3775 4778 9.959749 CTATCTTCTAAGATTAGCTTTCGTTCT 57.040 33.333 10.32 0.00 42.96 3.01
3867 4870 2.027460 CAGTTTTGTGCGGGTGGC 59.973 61.111 0.00 0.00 43.96 5.01
3881 4884 2.413634 CGGGTGGCGAAACAGATTTAAC 60.414 50.000 0.00 0.00 0.00 2.01
3883 4886 2.224784 GGTGGCGAAACAGATTTAACGT 59.775 45.455 0.00 0.00 0.00 3.99
3916 4919 8.764558 TGGTAGCTTGGATTTAAGACAATACTA 58.235 33.333 0.00 0.00 0.00 1.82
3971 4974 8.615705 AGATTGAGAATAAAGACCCCTAAAACT 58.384 33.333 0.00 0.00 0.00 2.66
3980 4984 9.739737 ATAAAGACCCCTAAAACTTAGATAGGA 57.260 33.333 10.41 0.00 38.81 2.94
4004 5008 5.126067 CCCTTTGTAATCATACCTCACTGG 58.874 45.833 0.00 0.00 42.93 4.00
4173 5177 1.229131 ATGGGCCATGATCAAGACCT 58.771 50.000 20.49 5.22 0.00 3.85
4198 5202 4.141779 GGTGGTGAATAGGAGAACGGTTAT 60.142 45.833 0.00 0.00 0.00 1.89
4314 5662 6.005066 TCATTGGAATGAGCCTCAATTCTA 57.995 37.500 0.00 0.00 40.32 2.10
4332 5680 0.604073 TACCAACGGTGCAAGATCGA 59.396 50.000 0.00 0.00 36.19 3.59
4338 5686 0.933097 CGGTGCAAGATCGATTGGAG 59.067 55.000 0.00 0.00 30.60 3.86
4353 5701 0.757561 TGGAGACGTGGTGGTCAGAA 60.758 55.000 0.00 0.00 39.42 3.02
4362 5710 3.077359 GTGGTGGTCAGAATCAAGGAAG 58.923 50.000 0.00 0.00 0.00 3.46
4369 5717 4.260170 GTCAGAATCAAGGAAGCACATCT 58.740 43.478 0.00 0.00 0.00 2.90
4375 5723 6.597280 AGAATCAAGGAAGCACATCTCTAAAC 59.403 38.462 0.00 0.00 0.00 2.01
4376 5724 5.489792 TCAAGGAAGCACATCTCTAAACT 57.510 39.130 0.00 0.00 0.00 2.66
4389 5737 0.387239 CTAAACTGCACCGCAAAGGC 60.387 55.000 0.00 0.00 46.52 4.35
4396 5744 1.666553 CACCGCAAAGGCTACGACA 60.667 57.895 6.13 0.00 46.52 4.35
4443 5791 3.711190 ACCTTTGGAAGCAAAGAAATGGT 59.289 39.130 0.00 0.00 42.94 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 180 1.816679 GCATCTCATCGCACTGGCA 60.817 57.895 0.00 0.00 41.24 4.92
229 242 0.651551 CTGAGCTTCATCGAGCAAGC 59.348 55.000 18.96 18.96 45.12 4.01
230 243 0.651551 GCTGAGCTTCATCGAGCAAG 59.348 55.000 0.00 0.00 45.12 4.01
231 244 0.037046 TGCTGAGCTTCATCGAGCAA 60.037 50.000 5.83 0.00 45.12 3.91
232 245 0.738762 GTGCTGAGCTTCATCGAGCA 60.739 55.000 5.83 0.00 45.12 4.26
233 246 1.427592 GGTGCTGAGCTTCATCGAGC 61.428 60.000 5.83 0.00 43.02 5.03
234 247 0.175302 AGGTGCTGAGCTTCATCGAG 59.825 55.000 5.83 0.00 0.00 4.04
235 248 0.108472 CAGGTGCTGAGCTTCATCGA 60.108 55.000 5.83 0.00 32.44 3.59
236 249 0.108472 TCAGGTGCTGAGCTTCATCG 60.108 55.000 5.83 0.00 35.39 3.84
291 304 2.676471 AAGCCAACCGATGTGCCC 60.676 61.111 0.00 0.00 0.00 5.36
316 329 1.747325 GAACCCAAGCTTGCTGGCAA 61.747 55.000 21.43 7.78 32.10 4.52
317 330 2.123338 AACCCAAGCTTGCTGGCA 60.123 55.556 21.43 0.00 32.10 4.92
318 331 1.905354 AGAACCCAAGCTTGCTGGC 60.905 57.895 21.43 9.84 32.10 4.85
319 332 1.530013 CCAGAACCCAAGCTTGCTGG 61.530 60.000 26.40 26.40 37.21 4.85
320 333 1.530013 CCCAGAACCCAAGCTTGCTG 61.530 60.000 21.43 20.13 0.00 4.41
321 334 1.228675 CCCAGAACCCAAGCTTGCT 60.229 57.895 21.43 9.65 0.00 3.91
322 335 0.827507 TTCCCAGAACCCAAGCTTGC 60.828 55.000 21.43 7.31 0.00 4.01
323 336 0.961753 GTTCCCAGAACCCAAGCTTG 59.038 55.000 19.93 19.93 0.00 4.01
404 417 2.038269 AATTACCTGGTGTGGCGCG 61.038 57.895 10.23 0.00 0.00 6.86
405 418 1.506262 CAATTACCTGGTGTGGCGC 59.494 57.895 10.23 0.00 0.00 6.53
406 419 1.506262 GCAATTACCTGGTGTGGCG 59.494 57.895 10.23 0.00 0.00 5.69
407 420 1.604147 GGGCAATTACCTGGTGTGGC 61.604 60.000 18.92 18.92 0.00 5.01
408 421 0.970427 GGGGCAATTACCTGGTGTGG 60.970 60.000 10.23 0.00 0.00 4.17
409 422 1.312371 CGGGGCAATTACCTGGTGTG 61.312 60.000 10.23 6.13 0.00 3.82
410 423 1.001393 CGGGGCAATTACCTGGTGT 60.001 57.895 10.23 0.00 0.00 4.16
411 424 3.918544 CGGGGCAATTACCTGGTG 58.081 61.111 10.23 0.00 0.00 4.17
414 427 0.322997 TTCACCGGGGCAATTACCTG 60.323 55.000 6.32 0.00 0.00 4.00
415 428 0.034477 CTTCACCGGGGCAATTACCT 60.034 55.000 6.32 0.00 0.00 3.08
416 429 1.663379 GCTTCACCGGGGCAATTACC 61.663 60.000 6.32 0.00 0.00 2.85
417 430 0.679960 AGCTTCACCGGGGCAATTAC 60.680 55.000 6.32 0.00 0.00 1.89
418 431 0.039035 AAGCTTCACCGGGGCAATTA 59.961 50.000 6.32 0.00 0.00 1.40
419 432 1.228862 AAGCTTCACCGGGGCAATT 60.229 52.632 6.32 0.00 0.00 2.32
420 433 1.978617 CAAGCTTCACCGGGGCAAT 60.979 57.895 6.32 0.00 0.00 3.56
421 434 2.597217 CAAGCTTCACCGGGGCAA 60.597 61.111 6.32 0.00 0.00 4.52
422 435 3.842925 GACAAGCTTCACCGGGGCA 62.843 63.158 6.32 0.00 0.00 5.36
423 436 3.056328 GACAAGCTTCACCGGGGC 61.056 66.667 6.32 4.50 0.00 5.80
424 437 1.672356 CTGACAAGCTTCACCGGGG 60.672 63.158 6.32 0.00 0.00 5.73
425 438 2.328099 GCTGACAAGCTTCACCGGG 61.328 63.158 6.32 0.00 46.60 5.73
426 439 3.257933 GCTGACAAGCTTCACCGG 58.742 61.111 0.00 0.00 46.60 5.28
434 447 0.379669 CATTCCCATCGCTGACAAGC 59.620 55.000 0.00 0.00 46.66 4.01
435 448 1.938577 CTCATTCCCATCGCTGACAAG 59.061 52.381 0.00 0.00 0.00 3.16
436 449 1.554617 TCTCATTCCCATCGCTGACAA 59.445 47.619 0.00 0.00 0.00 3.18
437 450 1.137675 CTCTCATTCCCATCGCTGACA 59.862 52.381 0.00 0.00 0.00 3.58
438 451 1.539929 CCTCTCATTCCCATCGCTGAC 60.540 57.143 0.00 0.00 0.00 3.51
439 452 0.755079 CCTCTCATTCCCATCGCTGA 59.245 55.000 0.00 0.00 0.00 4.26
440 453 0.250209 CCCTCTCATTCCCATCGCTG 60.250 60.000 0.00 0.00 0.00 5.18
441 454 0.399091 TCCCTCTCATTCCCATCGCT 60.399 55.000 0.00 0.00 0.00 4.93
442 455 0.469917 TTCCCTCTCATTCCCATCGC 59.530 55.000 0.00 0.00 0.00 4.58
443 456 2.843701 CTTTCCCTCTCATTCCCATCG 58.156 52.381 0.00 0.00 0.00 3.84
444 457 2.580962 GCTTTCCCTCTCATTCCCATC 58.419 52.381 0.00 0.00 0.00 3.51
445 458 1.133976 CGCTTTCCCTCTCATTCCCAT 60.134 52.381 0.00 0.00 0.00 4.00
446 459 0.253044 CGCTTTCCCTCTCATTCCCA 59.747 55.000 0.00 0.00 0.00 4.37
447 460 0.464554 CCGCTTTCCCTCTCATTCCC 60.465 60.000 0.00 0.00 0.00 3.97
448 461 0.253327 ACCGCTTTCCCTCTCATTCC 59.747 55.000 0.00 0.00 0.00 3.01
449 462 1.373570 CACCGCTTTCCCTCTCATTC 58.626 55.000 0.00 0.00 0.00 2.67
450 463 0.035056 CCACCGCTTTCCCTCTCATT 60.035 55.000 0.00 0.00 0.00 2.57
451 464 1.604378 CCACCGCTTTCCCTCTCAT 59.396 57.895 0.00 0.00 0.00 2.90
452 465 3.068881 CCACCGCTTTCCCTCTCA 58.931 61.111 0.00 0.00 0.00 3.27
453 466 2.436824 GCCACCGCTTTCCCTCTC 60.437 66.667 0.00 0.00 0.00 3.20
454 467 4.394712 CGCCACCGCTTTCCCTCT 62.395 66.667 0.00 0.00 0.00 3.69
480 493 2.216898 CTAAACATGGCTAGCTCCAGC 58.783 52.381 15.72 0.00 39.89 4.85
481 494 2.486191 CCCTAAACATGGCTAGCTCCAG 60.486 54.545 15.72 5.13 39.89 3.86
482 495 1.490490 CCCTAAACATGGCTAGCTCCA 59.510 52.381 15.72 5.30 40.97 3.86
483 496 1.490910 ACCCTAAACATGGCTAGCTCC 59.509 52.381 15.72 0.00 0.00 4.70
484 497 2.945668 CAACCCTAAACATGGCTAGCTC 59.054 50.000 15.72 5.44 0.00 4.09
485 498 2.357154 CCAACCCTAAACATGGCTAGCT 60.357 50.000 15.72 0.00 0.00 3.32
486 499 2.024414 CCAACCCTAAACATGGCTAGC 58.976 52.381 6.04 6.04 0.00 3.42
487 500 3.644966 TCCAACCCTAAACATGGCTAG 57.355 47.619 0.00 0.00 0.00 3.42
488 501 3.268334 ACATCCAACCCTAAACATGGCTA 59.732 43.478 0.00 0.00 0.00 3.93
489 502 2.042979 ACATCCAACCCTAAACATGGCT 59.957 45.455 0.00 0.00 0.00 4.75
490 503 2.456577 ACATCCAACCCTAAACATGGC 58.543 47.619 0.00 0.00 0.00 4.40
491 504 3.195396 CCAACATCCAACCCTAAACATGG 59.805 47.826 0.00 0.00 0.00 3.66
492 505 4.085733 TCCAACATCCAACCCTAAACATG 58.914 43.478 0.00 0.00 0.00 3.21
493 506 4.044065 TCTCCAACATCCAACCCTAAACAT 59.956 41.667 0.00 0.00 0.00 2.71
494 507 3.396276 TCTCCAACATCCAACCCTAAACA 59.604 43.478 0.00 0.00 0.00 2.83
495 508 4.010349 CTCTCCAACATCCAACCCTAAAC 58.990 47.826 0.00 0.00 0.00 2.01
496 509 3.913799 TCTCTCCAACATCCAACCCTAAA 59.086 43.478 0.00 0.00 0.00 1.85
497 510 3.526899 TCTCTCCAACATCCAACCCTAA 58.473 45.455 0.00 0.00 0.00 2.69
498 511 3.199442 TCTCTCCAACATCCAACCCTA 57.801 47.619 0.00 0.00 0.00 3.53
499 512 2.044793 TCTCTCCAACATCCAACCCT 57.955 50.000 0.00 0.00 0.00 4.34
500 513 2.879103 TTCTCTCCAACATCCAACCC 57.121 50.000 0.00 0.00 0.00 4.11
501 514 3.756117 ACTTTCTCTCCAACATCCAACC 58.244 45.455 0.00 0.00 0.00 3.77
502 515 4.938226 CCTACTTTCTCTCCAACATCCAAC 59.062 45.833 0.00 0.00 0.00 3.77
503 516 4.565652 GCCTACTTTCTCTCCAACATCCAA 60.566 45.833 0.00 0.00 0.00 3.53
504 517 3.055094 GCCTACTTTCTCTCCAACATCCA 60.055 47.826 0.00 0.00 0.00 3.41
505 518 3.198853 AGCCTACTTTCTCTCCAACATCC 59.801 47.826 0.00 0.00 0.00 3.51
506 519 4.161377 AGAGCCTACTTTCTCTCCAACATC 59.839 45.833 0.00 0.00 34.83 3.06
507 520 4.081198 CAGAGCCTACTTTCTCTCCAACAT 60.081 45.833 0.00 0.00 37.56 2.71
508 521 3.259374 CAGAGCCTACTTTCTCTCCAACA 59.741 47.826 0.00 0.00 37.56 3.33
509 522 3.511934 TCAGAGCCTACTTTCTCTCCAAC 59.488 47.826 0.00 0.00 37.56 3.77
510 523 3.779444 TCAGAGCCTACTTTCTCTCCAA 58.221 45.455 0.00 0.00 37.56 3.53
511 524 3.458044 TCAGAGCCTACTTTCTCTCCA 57.542 47.619 0.00 0.00 37.56 3.86
512 525 5.221362 GGTATTCAGAGCCTACTTTCTCTCC 60.221 48.000 0.00 0.00 37.56 3.71
513 526 5.361285 TGGTATTCAGAGCCTACTTTCTCTC 59.639 44.000 0.00 0.00 37.56 3.20
514 527 5.273208 TGGTATTCAGAGCCTACTTTCTCT 58.727 41.667 0.00 0.00 40.06 3.10
515 528 5.599999 TGGTATTCAGAGCCTACTTTCTC 57.400 43.478 0.00 0.00 0.00 2.87
516 529 5.663106 TCATGGTATTCAGAGCCTACTTTCT 59.337 40.000 0.00 0.00 0.00 2.52
517 530 5.918608 TCATGGTATTCAGAGCCTACTTTC 58.081 41.667 0.00 0.00 0.00 2.62
518 531 5.957771 TCATGGTATTCAGAGCCTACTTT 57.042 39.130 0.00 0.00 0.00 2.66
519 532 5.957771 TTCATGGTATTCAGAGCCTACTT 57.042 39.130 0.00 0.00 0.00 2.24
520 533 5.663106 TCTTTCATGGTATTCAGAGCCTACT 59.337 40.000 0.00 0.00 0.00 2.57
521 534 5.918608 TCTTTCATGGTATTCAGAGCCTAC 58.081 41.667 0.00 0.00 0.00 3.18
522 535 6.560003 TTCTTTCATGGTATTCAGAGCCTA 57.440 37.500 0.00 0.00 0.00 3.93
523 536 5.441718 TTCTTTCATGGTATTCAGAGCCT 57.558 39.130 0.00 0.00 0.00 4.58
524 537 6.429385 CCTATTCTTTCATGGTATTCAGAGCC 59.571 42.308 0.00 0.00 0.00 4.70
525 538 6.995091 ACCTATTCTTTCATGGTATTCAGAGC 59.005 38.462 0.00 0.00 0.00 4.09
526 539 8.834465 CAACCTATTCTTTCATGGTATTCAGAG 58.166 37.037 0.00 0.00 0.00 3.35
527 540 8.548025 TCAACCTATTCTTTCATGGTATTCAGA 58.452 33.333 0.00 0.00 0.00 3.27
528 541 8.737168 TCAACCTATTCTTTCATGGTATTCAG 57.263 34.615 0.00 0.00 0.00 3.02
529 542 9.177608 CTTCAACCTATTCTTTCATGGTATTCA 57.822 33.333 0.00 0.00 0.00 2.57
530 543 8.131731 GCTTCAACCTATTCTTTCATGGTATTC 58.868 37.037 0.00 0.00 0.00 1.75
531 544 7.201732 CGCTTCAACCTATTCTTTCATGGTATT 60.202 37.037 0.00 0.00 0.00 1.89
532 545 6.260936 CGCTTCAACCTATTCTTTCATGGTAT 59.739 38.462 0.00 0.00 0.00 2.73
533 546 5.584649 CGCTTCAACCTATTCTTTCATGGTA 59.415 40.000 0.00 0.00 0.00 3.25
534 547 4.396166 CGCTTCAACCTATTCTTTCATGGT 59.604 41.667 0.00 0.00 0.00 3.55
535 548 4.396166 ACGCTTCAACCTATTCTTTCATGG 59.604 41.667 0.00 0.00 0.00 3.66
536 549 5.551760 ACGCTTCAACCTATTCTTTCATG 57.448 39.130 0.00 0.00 0.00 3.07
537 550 6.238484 GCATACGCTTCAACCTATTCTTTCAT 60.238 38.462 0.00 0.00 34.30 2.57
538 551 5.064707 GCATACGCTTCAACCTATTCTTTCA 59.935 40.000 0.00 0.00 34.30 2.69
539 552 5.502606 GCATACGCTTCAACCTATTCTTTC 58.497 41.667 0.00 0.00 34.30 2.62
540 553 4.335594 GGCATACGCTTCAACCTATTCTTT 59.664 41.667 0.00 0.00 38.60 2.52
541 554 3.877508 GGCATACGCTTCAACCTATTCTT 59.122 43.478 0.00 0.00 38.60 2.52
542 555 3.134804 AGGCATACGCTTCAACCTATTCT 59.865 43.478 0.00 0.00 38.60 2.40
543 556 3.467803 AGGCATACGCTTCAACCTATTC 58.532 45.455 0.00 0.00 38.60 1.75
544 557 3.134804 AGAGGCATACGCTTCAACCTATT 59.865 43.478 0.00 0.00 46.32 1.73
545 558 2.700897 AGAGGCATACGCTTCAACCTAT 59.299 45.455 0.00 0.00 46.32 2.57
546 559 2.108168 AGAGGCATACGCTTCAACCTA 58.892 47.619 0.00 0.00 46.32 3.08
547 560 0.905357 AGAGGCATACGCTTCAACCT 59.095 50.000 0.00 0.00 46.32 3.50
548 561 1.009829 CAGAGGCATACGCTTCAACC 58.990 55.000 0.00 0.00 46.32 3.77
549 562 1.009829 CCAGAGGCATACGCTTCAAC 58.990 55.000 0.00 0.00 46.32 3.18
550 563 3.458872 CCAGAGGCATACGCTTCAA 57.541 52.632 0.00 0.00 46.32 2.69
576 589 0.438830 GCCTATATAACACGCAGCGC 59.561 55.000 16.61 0.00 0.00 5.92
577 590 1.778334 TGCCTATATAACACGCAGCG 58.222 50.000 14.82 14.82 0.00 5.18
578 591 2.345641 CGATGCCTATATAACACGCAGC 59.654 50.000 0.00 0.00 32.06 5.25
579 592 3.608506 GTCGATGCCTATATAACACGCAG 59.391 47.826 0.00 0.00 32.06 5.18
580 593 3.004944 TGTCGATGCCTATATAACACGCA 59.995 43.478 0.00 0.00 0.00 5.24
581 594 3.571571 TGTCGATGCCTATATAACACGC 58.428 45.455 0.00 0.00 0.00 5.34
582 595 5.043189 TCTGTCGATGCCTATATAACACG 57.957 43.478 0.00 0.00 0.00 4.49
585 598 9.900710 CCTATAATCTGTCGATGCCTATATAAC 57.099 37.037 0.00 0.00 0.00 1.89
586 599 9.078990 CCCTATAATCTGTCGATGCCTATATAA 57.921 37.037 0.00 0.00 0.00 0.98
587 600 8.225416 ACCCTATAATCTGTCGATGCCTATATA 58.775 37.037 0.00 0.00 0.00 0.86
588 601 7.069986 ACCCTATAATCTGTCGATGCCTATAT 58.930 38.462 0.00 0.00 0.00 0.86
589 602 6.432581 ACCCTATAATCTGTCGATGCCTATA 58.567 40.000 0.00 0.00 0.00 1.31
590 603 5.273208 ACCCTATAATCTGTCGATGCCTAT 58.727 41.667 0.00 0.00 0.00 2.57
591 604 4.673968 ACCCTATAATCTGTCGATGCCTA 58.326 43.478 0.00 0.00 0.00 3.93
592 605 3.511477 ACCCTATAATCTGTCGATGCCT 58.489 45.455 0.00 0.00 0.00 4.75
593 606 3.963428 ACCCTATAATCTGTCGATGCC 57.037 47.619 0.00 0.00 0.00 4.40
594 607 4.452455 CCAAACCCTATAATCTGTCGATGC 59.548 45.833 0.00 0.00 0.00 3.91
595 608 5.466728 CACCAAACCCTATAATCTGTCGATG 59.533 44.000 0.00 0.00 0.00 3.84
596 609 5.454755 CCACCAAACCCTATAATCTGTCGAT 60.455 44.000 0.00 0.00 0.00 3.59
597 610 4.141801 CCACCAAACCCTATAATCTGTCGA 60.142 45.833 0.00 0.00 0.00 4.20
598 611 4.127171 CCACCAAACCCTATAATCTGTCG 58.873 47.826 0.00 0.00 0.00 4.35
599 612 5.112129 ACCACCAAACCCTATAATCTGTC 57.888 43.478 0.00 0.00 0.00 3.51
600 613 5.506708 GAACCACCAAACCCTATAATCTGT 58.493 41.667 0.00 0.00 0.00 3.41
601 614 4.574828 CGAACCACCAAACCCTATAATCTG 59.425 45.833 0.00 0.00 0.00 2.90
602 615 4.384868 CCGAACCACCAAACCCTATAATCT 60.385 45.833 0.00 0.00 0.00 2.40
603 616 3.881089 CCGAACCACCAAACCCTATAATC 59.119 47.826 0.00 0.00 0.00 1.75
604 617 3.267551 ACCGAACCACCAAACCCTATAAT 59.732 43.478 0.00 0.00 0.00 1.28
605 618 2.643801 ACCGAACCACCAAACCCTATAA 59.356 45.455 0.00 0.00 0.00 0.98
606 619 2.268107 ACCGAACCACCAAACCCTATA 58.732 47.619 0.00 0.00 0.00 1.31
607 620 1.069775 ACCGAACCACCAAACCCTAT 58.930 50.000 0.00 0.00 0.00 2.57
608 621 1.624813 CTACCGAACCACCAAACCCTA 59.375 52.381 0.00 0.00 0.00 3.53
609 622 0.399075 CTACCGAACCACCAAACCCT 59.601 55.000 0.00 0.00 0.00 4.34
610 623 0.397564 TCTACCGAACCACCAAACCC 59.602 55.000 0.00 0.00 0.00 4.11
611 624 1.804601 CTCTACCGAACCACCAAACC 58.195 55.000 0.00 0.00 0.00 3.27
612 625 1.154197 GCTCTACCGAACCACCAAAC 58.846 55.000 0.00 0.00 0.00 2.93
613 626 1.053424 AGCTCTACCGAACCACCAAA 58.947 50.000 0.00 0.00 0.00 3.28
614 627 0.320374 CAGCTCTACCGAACCACCAA 59.680 55.000 0.00 0.00 0.00 3.67
615 628 1.541310 CCAGCTCTACCGAACCACCA 61.541 60.000 0.00 0.00 0.00 4.17
616 629 1.218316 CCAGCTCTACCGAACCACC 59.782 63.158 0.00 0.00 0.00 4.61
617 630 0.824759 ATCCAGCTCTACCGAACCAC 59.175 55.000 0.00 0.00 0.00 4.16
618 631 1.207089 CAATCCAGCTCTACCGAACCA 59.793 52.381 0.00 0.00 0.00 3.67
619 632 1.480954 TCAATCCAGCTCTACCGAACC 59.519 52.381 0.00 0.00 0.00 3.62
620 633 2.961526 TCAATCCAGCTCTACCGAAC 57.038 50.000 0.00 0.00 0.00 3.95
621 634 2.365617 GGATCAATCCAGCTCTACCGAA 59.634 50.000 4.09 0.00 46.38 4.30
622 635 1.964223 GGATCAATCCAGCTCTACCGA 59.036 52.381 4.09 0.00 46.38 4.69
623 636 2.447244 GGATCAATCCAGCTCTACCG 57.553 55.000 4.09 0.00 46.38 4.02
624 637 2.968574 TGAGGATCAATCCAGCTCTACC 59.031 50.000 11.51 0.00 45.97 3.18
640 653 9.658799 CTCATCTTGTATAACTTTTCTTGAGGA 57.341 33.333 0.00 0.00 0.00 3.71
641 654 8.887717 CCTCATCTTGTATAACTTTTCTTGAGG 58.112 37.037 0.00 0.00 39.36 3.86
642 655 9.658799 TCCTCATCTTGTATAACTTTTCTTGAG 57.341 33.333 0.00 0.00 0.00 3.02
667 680 8.148999 CAGGTGGTTAGGTAGTTAGGATTTATC 58.851 40.741 0.00 0.00 0.00 1.75
668 681 7.847848 TCAGGTGGTTAGGTAGTTAGGATTTAT 59.152 37.037 0.00 0.00 0.00 1.40
669 682 7.191210 TCAGGTGGTTAGGTAGTTAGGATTTA 58.809 38.462 0.00 0.00 0.00 1.40
670 683 6.027482 TCAGGTGGTTAGGTAGTTAGGATTT 58.973 40.000 0.00 0.00 0.00 2.17
671 684 5.596763 TCAGGTGGTTAGGTAGTTAGGATT 58.403 41.667 0.00 0.00 0.00 3.01
672 685 5.216665 TCAGGTGGTTAGGTAGTTAGGAT 57.783 43.478 0.00 0.00 0.00 3.24
673 686 4.680278 TCAGGTGGTTAGGTAGTTAGGA 57.320 45.455 0.00 0.00 0.00 2.94
674 687 5.952347 AATCAGGTGGTTAGGTAGTTAGG 57.048 43.478 0.00 0.00 0.00 2.69
675 688 7.414222 TGTAATCAGGTGGTTAGGTAGTTAG 57.586 40.000 0.00 0.00 0.00 2.34
676 689 7.795534 TTGTAATCAGGTGGTTAGGTAGTTA 57.204 36.000 0.00 0.00 0.00 2.24
677 690 6.691255 TTGTAATCAGGTGGTTAGGTAGTT 57.309 37.500 0.00 0.00 0.00 2.24
678 691 6.442564 TGATTGTAATCAGGTGGTTAGGTAGT 59.557 38.462 3.28 0.00 40.32 2.73
679 692 6.884832 TGATTGTAATCAGGTGGTTAGGTAG 58.115 40.000 3.28 0.00 40.32 3.18
680 693 6.877668 TGATTGTAATCAGGTGGTTAGGTA 57.122 37.500 3.28 0.00 40.32 3.08
681 694 5.772393 TGATTGTAATCAGGTGGTTAGGT 57.228 39.130 3.28 0.00 40.32 3.08
682 695 6.180472 AGTTGATTGTAATCAGGTGGTTAGG 58.820 40.000 7.30 0.00 45.35 2.69
683 696 6.878923 TGAGTTGATTGTAATCAGGTGGTTAG 59.121 38.462 7.30 0.00 45.35 2.34
684 697 6.653320 GTGAGTTGATTGTAATCAGGTGGTTA 59.347 38.462 7.30 0.00 45.35 2.85
685 698 5.473504 GTGAGTTGATTGTAATCAGGTGGTT 59.526 40.000 7.30 0.00 45.35 3.67
686 699 5.003804 GTGAGTTGATTGTAATCAGGTGGT 58.996 41.667 7.30 0.00 45.35 4.16
687 700 4.093408 CGTGAGTTGATTGTAATCAGGTGG 59.907 45.833 7.30 0.00 45.35 4.61
688 701 4.436050 GCGTGAGTTGATTGTAATCAGGTG 60.436 45.833 7.30 0.00 45.35 4.00
689 702 3.684788 GCGTGAGTTGATTGTAATCAGGT 59.315 43.478 7.30 0.14 45.35 4.00
690 703 3.684305 TGCGTGAGTTGATTGTAATCAGG 59.316 43.478 7.30 0.00 45.35 3.86
691 704 4.926860 TGCGTGAGTTGATTGTAATCAG 57.073 40.909 7.30 0.00 45.35 2.90
692 705 4.513318 TGTTGCGTGAGTTGATTGTAATCA 59.487 37.500 3.28 3.28 43.28 2.57
693 706 4.846137 GTGTTGCGTGAGTTGATTGTAATC 59.154 41.667 0.00 0.00 35.97 1.75
694 707 4.320202 GGTGTTGCGTGAGTTGATTGTAAT 60.320 41.667 0.00 0.00 0.00 1.89
695 708 3.002862 GGTGTTGCGTGAGTTGATTGTAA 59.997 43.478 0.00 0.00 0.00 2.41
696 709 2.546368 GGTGTTGCGTGAGTTGATTGTA 59.454 45.455 0.00 0.00 0.00 2.41
697 710 1.333619 GGTGTTGCGTGAGTTGATTGT 59.666 47.619 0.00 0.00 0.00 2.71
698 711 1.333308 TGGTGTTGCGTGAGTTGATTG 59.667 47.619 0.00 0.00 0.00 2.67
699 712 1.603802 CTGGTGTTGCGTGAGTTGATT 59.396 47.619 0.00 0.00 0.00 2.57
700 713 1.202639 TCTGGTGTTGCGTGAGTTGAT 60.203 47.619 0.00 0.00 0.00 2.57
701 714 0.176910 TCTGGTGTTGCGTGAGTTGA 59.823 50.000 0.00 0.00 0.00 3.18
702 715 1.195448 GATCTGGTGTTGCGTGAGTTG 59.805 52.381 0.00 0.00 0.00 3.16
703 716 1.512926 GATCTGGTGTTGCGTGAGTT 58.487 50.000 0.00 0.00 0.00 3.01
704 717 0.320771 GGATCTGGTGTTGCGTGAGT 60.321 55.000 0.00 0.00 0.00 3.41
705 718 0.036952 AGGATCTGGTGTTGCGTGAG 60.037 55.000 0.00 0.00 0.00 3.51
706 719 1.067142 GTAGGATCTGGTGTTGCGTGA 60.067 52.381 0.00 0.00 0.00 4.35
707 720 1.359848 GTAGGATCTGGTGTTGCGTG 58.640 55.000 0.00 0.00 0.00 5.34
708 721 0.249398 GGTAGGATCTGGTGTTGCGT 59.751 55.000 0.00 0.00 0.00 5.24
709 722 0.249120 TGGTAGGATCTGGTGTTGCG 59.751 55.000 0.00 0.00 0.00 4.85
710 723 1.555075 TCTGGTAGGATCTGGTGTTGC 59.445 52.381 0.00 0.00 0.00 4.17
711 724 3.198635 ACATCTGGTAGGATCTGGTGTTG 59.801 47.826 0.00 0.00 0.00 3.33
712 725 3.454858 ACATCTGGTAGGATCTGGTGTT 58.545 45.455 0.00 0.00 0.00 3.32
713 726 3.121929 ACATCTGGTAGGATCTGGTGT 57.878 47.619 0.00 0.00 0.00 4.16
714 727 7.201741 CGTATATACATCTGGTAGGATCTGGTG 60.202 44.444 13.22 0.00 34.92 4.17
715 728 6.829298 CGTATATACATCTGGTAGGATCTGGT 59.171 42.308 13.22 0.00 34.92 4.00
716 729 6.263392 CCGTATATACATCTGGTAGGATCTGG 59.737 46.154 13.22 0.00 34.92 3.86
717 730 6.238786 GCCGTATATACATCTGGTAGGATCTG 60.239 46.154 13.22 0.00 34.92 2.90
718 731 5.828859 GCCGTATATACATCTGGTAGGATCT 59.171 44.000 13.22 0.00 34.92 2.75
719 732 5.828859 AGCCGTATATACATCTGGTAGGATC 59.171 44.000 13.22 0.00 34.92 3.36
720 733 5.767670 AGCCGTATATACATCTGGTAGGAT 58.232 41.667 13.22 0.00 34.92 3.24
721 734 5.188988 AGCCGTATATACATCTGGTAGGA 57.811 43.478 13.22 0.00 34.92 2.94
722 735 5.916661 AAGCCGTATATACATCTGGTAGG 57.083 43.478 13.22 4.56 34.92 3.18
737 750 9.430623 TGTACACGTATAGTTATATAAGCCGTA 57.569 33.333 0.00 0.00 28.62 4.02
738 751 8.322906 TGTACACGTATAGTTATATAAGCCGT 57.677 34.615 0.00 0.00 29.24 5.68
739 752 9.778993 ATTGTACACGTATAGTTATATAAGCCG 57.221 33.333 0.00 0.00 29.38 5.52
752 765 9.787532 GGTGTTAGAAAGTATTGTACACGTATA 57.212 33.333 0.00 0.00 0.00 1.47
753 766 7.761249 GGGTGTTAGAAAGTATTGTACACGTAT 59.239 37.037 0.00 0.00 0.00 3.06
754 767 7.090173 GGGTGTTAGAAAGTATTGTACACGTA 58.910 38.462 0.00 0.00 0.00 3.57
755 768 5.928264 GGGTGTTAGAAAGTATTGTACACGT 59.072 40.000 0.00 0.00 0.00 4.49
756 769 5.927689 TGGGTGTTAGAAAGTATTGTACACG 59.072 40.000 0.00 0.00 0.00 4.49
757 770 6.148315 GGTGGGTGTTAGAAAGTATTGTACAC 59.852 42.308 0.00 0.00 0.00 2.90
758 771 6.183361 TGGTGGGTGTTAGAAAGTATTGTACA 60.183 38.462 0.00 0.00 0.00 2.90
759 772 6.148315 GTGGTGGGTGTTAGAAAGTATTGTAC 59.852 42.308 0.00 0.00 0.00 2.90
760 773 6.183361 TGTGGTGGGTGTTAGAAAGTATTGTA 60.183 38.462 0.00 0.00 0.00 2.41
761 774 5.067954 GTGGTGGGTGTTAGAAAGTATTGT 58.932 41.667 0.00 0.00 0.00 2.71
762 775 5.067273 TGTGGTGGGTGTTAGAAAGTATTG 58.933 41.667 0.00 0.00 0.00 1.90
763 776 5.313280 TGTGGTGGGTGTTAGAAAGTATT 57.687 39.130 0.00 0.00 0.00 1.89
764 777 4.986054 TGTGGTGGGTGTTAGAAAGTAT 57.014 40.909 0.00 0.00 0.00 2.12
765 778 4.505918 CCATGTGGTGGGTGTTAGAAAGTA 60.506 45.833 0.00 0.00 44.79 2.24
766 779 3.486383 CATGTGGTGGGTGTTAGAAAGT 58.514 45.455 0.00 0.00 0.00 2.66
767 780 2.819608 CCATGTGGTGGGTGTTAGAAAG 59.180 50.000 0.00 0.00 44.79 2.62
768 781 2.870175 CCATGTGGTGGGTGTTAGAAA 58.130 47.619 0.00 0.00 44.79 2.52
769 782 2.577606 CCATGTGGTGGGTGTTAGAA 57.422 50.000 0.00 0.00 44.79 2.10
972 987 7.556635 GTGGAGTTGGAGGCTATACTTAAATTT 59.443 37.037 0.00 0.00 0.00 1.82
1096 1129 0.695347 AGCTTGGACCCTGGAAGAAG 59.305 55.000 0.00 0.00 34.07 2.85
1283 1335 2.234143 GGCTGAATCTATTGCCTTCCC 58.766 52.381 0.00 0.00 41.92 3.97
1322 1377 5.459110 TTGGAAGTCGTAAATGTAATCGC 57.541 39.130 0.00 0.00 0.00 4.58
1363 1418 9.440784 CTTTATCGAGTAGTAGAAGTAGCTTTG 57.559 37.037 0.00 0.00 0.00 2.77
1400 1455 4.848562 ATGATGAACCGCGAGACTAATA 57.151 40.909 8.23 0.00 0.00 0.98
1401 1456 3.735237 ATGATGAACCGCGAGACTAAT 57.265 42.857 8.23 0.00 0.00 1.73
1402 1457 3.119280 TCAATGATGAACCGCGAGACTAA 60.119 43.478 8.23 0.00 30.99 2.24
1448 1503 3.311091 TGTAAGTTATCCGCCCATACCT 58.689 45.455 0.00 0.00 0.00 3.08
1450 1505 3.064931 GCTGTAAGTTATCCGCCCATAC 58.935 50.000 0.00 0.00 35.30 2.39
1462 1520 4.150897 TCAAGAACCACTGCTGTAAGTT 57.849 40.909 10.01 10.01 35.30 2.66
1477 1535 1.377202 GCACGGCCCAGATCAAGAA 60.377 57.895 0.00 0.00 0.00 2.52
1505 1563 3.181476 ACAGAGCATATACACATCGCACA 60.181 43.478 0.00 0.00 0.00 4.57
1512 1570 2.235898 TGCACCACAGAGCATATACACA 59.764 45.455 0.00 0.00 34.43 3.72
1520 1578 1.079197 CCGTATGCACCACAGAGCA 60.079 57.895 0.00 0.00 43.97 4.26
1548 1612 2.112815 GTACGGCAGGGCATTGTCC 61.113 63.158 0.00 0.00 0.00 4.02
1550 1614 1.377202 CAGTACGGCAGGGCATTGT 60.377 57.895 0.00 0.00 0.00 2.71
1685 1752 0.670854 GAACTTGTCAGACGGAGCCC 60.671 60.000 0.00 0.00 0.00 5.19
1759 1838 0.247736 ACCTGACATTCGTGAGAGCC 59.752 55.000 0.00 0.00 43.69 4.70
1827 1906 0.393820 CATGCCAAACAAAGCACCCT 59.606 50.000 0.00 0.00 42.84 4.34
1881 1963 3.467776 GAGTGTGCCTCCTCCAATC 57.532 57.895 0.00 0.00 33.79 2.67
1933 2024 5.829924 TGATCTTTGTTTTCTTCCTCTGCTT 59.170 36.000 0.00 0.00 0.00 3.91
2184 2364 3.869065 TCCTTTACCAAGCATAGTTCCG 58.131 45.455 0.00 0.00 0.00 4.30
2289 2486 3.778954 AGGACTCCCTGTGAAAGAAAG 57.221 47.619 0.00 0.00 42.42 2.62
2550 2762 0.461548 TGAAGCTCGGCCATAGTGAG 59.538 55.000 2.24 1.21 0.00 3.51
2582 2796 0.249447 GAAGTTTGGTGGCACTTGGC 60.249 55.000 18.45 6.18 43.74 4.52
2583 2797 0.389025 GGAAGTTTGGTGGCACTTGG 59.611 55.000 18.45 0.00 33.22 3.61
2601 2936 3.276857 AGAAGTATCAGCATTGCAGTGG 58.723 45.455 11.53 0.00 0.00 4.00
2667 3021 5.129485 TCCACTGATAATCTTGAACCTCCTC 59.871 44.000 0.00 0.00 0.00 3.71
2737 3091 1.719529 TTCAGGTCCCGGTGAACTAA 58.280 50.000 9.79 0.00 39.72 2.24
2865 3219 2.500098 TGACTGTGCTTACTATGTCCCC 59.500 50.000 0.00 0.00 0.00 4.81
2939 3390 1.737236 GCGACATGTATCCACTGCAAA 59.263 47.619 0.00 0.00 0.00 3.68
3458 4323 4.997395 TCATCTTGGCTCTAGTTTTGTGAC 59.003 41.667 0.00 0.00 0.00 3.67
3469 4334 1.283347 TCAAGGCTCATCTTGGCTCT 58.717 50.000 4.99 0.00 43.05 4.09
3529 4431 9.307121 ACATCAAACTCATCTCTAAAAGATACG 57.693 33.333 0.00 0.00 43.13 3.06
3532 4434 9.606631 GGTACATCAAACTCATCTCTAAAAGAT 57.393 33.333 0.00 0.00 46.04 2.40
3881 4884 0.511221 CCAAGCTACCAACGACAACG 59.489 55.000 0.00 0.00 45.75 4.10
3883 4886 2.851263 ATCCAAGCTACCAACGACAA 57.149 45.000 0.00 0.00 0.00 3.18
3916 4919 0.249489 AGCACTTCGTCAAGCGTCTT 60.249 50.000 0.00 0.00 42.13 3.01
3955 4958 8.985922 GTCCTATCTAAGTTTTAGGGGTCTTTA 58.014 37.037 6.45 0.00 34.48 1.85
3971 4974 8.877195 GGTATGATTACAAAGGGTCCTATCTAA 58.123 37.037 0.00 0.00 0.00 2.10
3980 4984 5.339200 CCAGTGAGGTATGATTACAAAGGGT 60.339 44.000 0.00 0.00 0.00 4.34
4090 5094 2.874701 CTGTCCTTCCAGAACAACACTG 59.125 50.000 0.00 0.00 34.23 3.66
4173 5177 3.028850 CCGTTCTCCTATTCACCACCTA 58.971 50.000 0.00 0.00 0.00 3.08
4198 5202 2.089201 CATGAAAGTGCAGAGCATCCA 58.911 47.619 0.00 0.00 41.91 3.41
4307 5311 2.811431 TCTTGCACCGTTGGTAGAATTG 59.189 45.455 0.00 0.00 32.11 2.32
4308 5312 3.134574 TCTTGCACCGTTGGTAGAATT 57.865 42.857 0.00 0.00 32.11 2.17
4314 5662 0.036388 ATCGATCTTGCACCGTTGGT 60.036 50.000 0.00 0.00 35.62 3.67
4332 5680 0.321671 CTGACCACCACGTCTCCAAT 59.678 55.000 0.00 0.00 33.70 3.16
4338 5686 2.069273 CTTGATTCTGACCACCACGTC 58.931 52.381 0.00 0.00 0.00 4.34
4353 5701 5.879223 CAGTTTAGAGATGTGCTTCCTTGAT 59.121 40.000 0.00 0.00 0.00 2.57
4362 5710 1.394917 CGGTGCAGTTTAGAGATGTGC 59.605 52.381 0.00 0.00 34.62 4.57
4369 5717 1.234821 CCTTTGCGGTGCAGTTTAGA 58.765 50.000 0.00 0.00 40.61 2.10
4375 5723 2.870372 GTAGCCTTTGCGGTGCAG 59.130 61.111 0.00 0.00 44.33 4.41
4376 5724 3.047280 CGTAGCCTTTGCGGTGCA 61.047 61.111 0.00 0.00 44.33 4.57
4408 5756 3.889815 TCCAAAGGTTCCAGCATATCAG 58.110 45.455 0.00 0.00 0.00 2.90
4443 5791 2.050533 GCATTGTTGGTGCGCGAA 60.051 55.556 12.10 0.00 32.29 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.