Multiple sequence alignment - TraesCS1D01G091500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G091500 chr1D 100.000 2951 0 0 799 3749 77650067 77653017 0.000000e+00 5450.0
1 TraesCS1D01G091500 chr1D 98.248 742 11 2 3010 3749 77662827 77663568 0.000000e+00 1297.0
2 TraesCS1D01G091500 chr1D 100.000 299 0 0 1 299 77649269 77649567 1.520000e-153 553.0
3 TraesCS1D01G091500 chr1A 95.455 1958 77 7 799 2751 108798008 108799958 0.000000e+00 3112.0
4 TraesCS1D01G091500 chr1B 95.738 1783 75 1 988 2770 121178428 121180209 0.000000e+00 2870.0
5 TraesCS1D01G091500 chr1B 100.000 46 0 0 799 844 121178108 121178153 6.670000e-13 86.1
6 TraesCS1D01G091500 chr2D 98.520 743 8 3 3010 3749 638483907 638484649 0.000000e+00 1308.0
7 TraesCS1D01G091500 chr2D 98.518 742 8 3 3010 3749 638493559 638494299 0.000000e+00 1306.0
8 TraesCS1D01G091500 chr2D 98.383 742 10 2 3010 3749 168372472 168373213 0.000000e+00 1303.0
9 TraesCS1D01G091500 chr2D 98.383 742 9 3 3010 3749 551784465 551785205 0.000000e+00 1301.0
10 TraesCS1D01G091500 chr2D 98.381 741 10 2 3010 3748 575088139 575088879 0.000000e+00 1301.0
11 TraesCS1D01G091500 chr4D 98.387 744 7 4 3010 3749 405830566 405831308 0.000000e+00 1303.0
12 TraesCS1D01G091500 chr4D 98.383 742 10 2 3010 3749 447896665 447895924 0.000000e+00 1303.0
13 TraesCS1D01G091500 chr4D 83.445 447 67 7 1071 1515 10640829 10641270 3.490000e-110 409.0
14 TraesCS1D01G091500 chr3D 98.383 742 9 3 3010 3749 75051504 75052244 0.000000e+00 1301.0
15 TraesCS1D01G091500 chr4A 80.231 607 109 9 1030 1635 593289921 593289325 2.660000e-121 446.0
16 TraesCS1D01G091500 chr4A 86.822 129 12 4 2886 3010 602785674 602785801 5.050000e-29 139.0
17 TraesCS1D01G091500 chr3A 77.525 703 136 14 1976 2670 609687720 609687032 1.620000e-108 403.0
18 TraesCS1D01G091500 chr5D 79.889 542 96 10 1970 2505 501096806 501097340 5.870000e-103 385.0
19 TraesCS1D01G091500 chr5D 85.827 127 13 3 2888 3010 544897098 544897223 3.040000e-26 130.0
20 TraesCS1D01G091500 chr5D 78.862 123 24 2 1105 1226 3639907 3639786 8.630000e-12 82.4
21 TraesCS1D01G091500 chr7A 78.777 556 115 3 1965 2518 726605069 726604515 1.640000e-98 370.0
22 TraesCS1D01G091500 chr7A 78.276 557 116 5 1965 2518 727277603 727278157 1.660000e-93 353.0
23 TraesCS1D01G091500 chr7A 77.838 555 122 1 1965 2518 682898229 682897675 3.590000e-90 342.0
24 TraesCS1D01G091500 chr7A 79.021 429 79 10 1091 1515 682899094 682898673 2.200000e-72 283.0
25 TraesCS1D01G091500 chr5A 79.291 536 98 11 1976 2505 626119902 626119374 2.750000e-96 363.0
26 TraesCS1D01G091500 chr5A 78.862 123 24 2 1105 1226 2421436 2421557 8.630000e-12 82.4
27 TraesCS1D01G091500 chr5B 78.928 541 103 10 1970 2505 622605473 622606007 1.280000e-94 357.0
28 TraesCS1D01G091500 chr7B 79.318 440 82 8 1079 1515 671702150 671702583 2.190000e-77 300.0
29 TraesCS1D01G091500 chr7B 84.314 102 14 2 2910 3010 593628281 593628381 8.570000e-17 99.0
30 TraesCS1D01G091500 chr7D 78.291 433 87 6 1085 1515 591814423 591813996 4.770000e-69 272.0
31 TraesCS1D01G091500 chr7D 88.060 134 10 4 2883 3010 75807798 75807931 1.800000e-33 154.0
32 TraesCS1D01G091500 chr7D 85.821 134 13 5 2883 3010 28440754 28440621 1.820000e-28 137.0
33 TraesCS1D01G091500 chrUn 80.816 245 34 4 35 279 41686760 41686529 2.980000e-41 180.0
34 TraesCS1D01G091500 chr6B 88.889 126 12 2 2886 3010 612269402 612269526 1.800000e-33 154.0
35 TraesCS1D01G091500 chr4B 85.606 132 15 3 2883 3010 656891085 656890954 6.530000e-28 135.0
36 TraesCS1D01G091500 chr6A 84.733 131 16 4 2883 3010 616220766 616220637 1.090000e-25 128.0
37 TraesCS1D01G091500 chr2A 83.333 96 15 1 2916 3010 538432696 538432791 1.850000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G091500 chr1D 77649269 77653017 3748 False 3001.50 5450 100.0000 1 3749 2 chr1D.!!$F2 3748
1 TraesCS1D01G091500 chr1D 77662827 77663568 741 False 1297.00 1297 98.2480 3010 3749 1 chr1D.!!$F1 739
2 TraesCS1D01G091500 chr1A 108798008 108799958 1950 False 3112.00 3112 95.4550 799 2751 1 chr1A.!!$F1 1952
3 TraesCS1D01G091500 chr1B 121178108 121180209 2101 False 1478.05 2870 97.8690 799 2770 2 chr1B.!!$F1 1971
4 TraesCS1D01G091500 chr2D 638483907 638484649 742 False 1308.00 1308 98.5200 3010 3749 1 chr2D.!!$F4 739
5 TraesCS1D01G091500 chr2D 638493559 638494299 740 False 1306.00 1306 98.5180 3010 3749 1 chr2D.!!$F5 739
6 TraesCS1D01G091500 chr2D 168372472 168373213 741 False 1303.00 1303 98.3830 3010 3749 1 chr2D.!!$F1 739
7 TraesCS1D01G091500 chr2D 551784465 551785205 740 False 1301.00 1301 98.3830 3010 3749 1 chr2D.!!$F2 739
8 TraesCS1D01G091500 chr2D 575088139 575088879 740 False 1301.00 1301 98.3810 3010 3748 1 chr2D.!!$F3 738
9 TraesCS1D01G091500 chr4D 405830566 405831308 742 False 1303.00 1303 98.3870 3010 3749 1 chr4D.!!$F2 739
10 TraesCS1D01G091500 chr4D 447895924 447896665 741 True 1303.00 1303 98.3830 3010 3749 1 chr4D.!!$R1 739
11 TraesCS1D01G091500 chr3D 75051504 75052244 740 False 1301.00 1301 98.3830 3010 3749 1 chr3D.!!$F1 739
12 TraesCS1D01G091500 chr4A 593289325 593289921 596 True 446.00 446 80.2310 1030 1635 1 chr4A.!!$R1 605
13 TraesCS1D01G091500 chr3A 609687032 609687720 688 True 403.00 403 77.5250 1976 2670 1 chr3A.!!$R1 694
14 TraesCS1D01G091500 chr5D 501096806 501097340 534 False 385.00 385 79.8890 1970 2505 1 chr5D.!!$F1 535
15 TraesCS1D01G091500 chr7A 726604515 726605069 554 True 370.00 370 78.7770 1965 2518 1 chr7A.!!$R1 553
16 TraesCS1D01G091500 chr7A 727277603 727278157 554 False 353.00 353 78.2760 1965 2518 1 chr7A.!!$F1 553
17 TraesCS1D01G091500 chr7A 682897675 682899094 1419 True 312.50 342 78.4295 1091 2518 2 chr7A.!!$R2 1427
18 TraesCS1D01G091500 chr5A 626119374 626119902 528 True 363.00 363 79.2910 1976 2505 1 chr5A.!!$R1 529
19 TraesCS1D01G091500 chr5B 622605473 622606007 534 False 357.00 357 78.9280 1970 2505 1 chr5B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.321122 GTGCCTCTGACAAGGTCCAG 60.321 60.0 0.00 0.00 38.79 3.86 F
148 149 0.464036 GACACTCTCCACACCACACA 59.536 55.0 0.00 0.00 0.00 3.72 F
149 150 0.465705 ACACTCTCCACACCACACAG 59.534 55.0 0.00 0.00 0.00 3.66 F
195 196 0.539051 AAGAGTCCATCTTGGCCGAG 59.461 55.0 14.59 14.59 46.80 4.63 F
1518 1687 0.896940 ACCTCGCTTTCTACGGTGGA 60.897 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1705 0.458543 CAACGAGCAGTATGAGCGGT 60.459 55.000 0.00 0.00 39.69 5.68 R
2100 2357 4.776322 ATGCTGCGCTGCGGGTAA 62.776 61.111 30.11 15.68 35.15 2.85 R
2289 2546 1.153901 CGACGCCACGTACAAGGAT 60.154 57.895 4.83 0.00 41.37 3.24 R
2293 2550 2.144833 ATCACCGACGCCACGTACAA 62.145 55.000 0.00 0.00 41.37 2.41 R
2928 3186 0.045623 TTAAGGGGATGAGAGGCCCA 59.954 55.000 0.00 0.00 46.57 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.268687 CGTGCCTCTGACAAGGTC 57.731 61.111 5.82 0.00 38.79 3.85
18 19 1.374758 CGTGCCTCTGACAAGGTCC 60.375 63.158 5.82 0.00 38.79 4.46
19 20 1.754745 GTGCCTCTGACAAGGTCCA 59.245 57.895 0.00 0.00 38.79 4.02
20 21 0.321122 GTGCCTCTGACAAGGTCCAG 60.321 60.000 0.00 0.00 38.79 3.86
21 22 1.298014 GCCTCTGACAAGGTCCAGG 59.702 63.158 6.97 6.97 38.79 4.45
22 23 1.194781 GCCTCTGACAAGGTCCAGGA 61.195 60.000 13.07 0.00 38.79 3.86
23 24 0.610687 CCTCTGACAAGGTCCAGGAC 59.389 60.000 11.70 11.70 35.07 3.85
31 32 4.489771 GGTCCAGGACCGGCCATG 62.490 72.222 23.67 6.56 43.14 3.66
32 33 3.399181 GTCCAGGACCGGCCATGA 61.399 66.667 8.65 3.36 40.02 3.07
33 34 3.399181 TCCAGGACCGGCCATGAC 61.399 66.667 3.20 0.00 40.02 3.06
34 35 4.838152 CCAGGACCGGCCATGACG 62.838 72.222 3.20 0.00 40.02 4.35
51 52 4.329545 GCCAGTCGCCCACTCCAA 62.330 66.667 0.00 0.00 30.26 3.53
52 53 2.046892 CCAGTCGCCCACTCCAAG 60.047 66.667 0.00 0.00 30.26 3.61
53 54 2.046892 CAGTCGCCCACTCCAAGG 60.047 66.667 0.00 0.00 30.26 3.61
61 62 2.936823 CCACTCCAAGGGATAGCCT 58.063 57.895 0.00 0.00 0.00 4.58
62 63 1.216990 CCACTCCAAGGGATAGCCTT 58.783 55.000 0.00 0.00 0.00 4.35
63 64 1.133976 CCACTCCAAGGGATAGCCTTG 60.134 57.143 0.00 0.00 42.81 3.61
64 65 0.548510 ACTCCAAGGGATAGCCTTGC 59.451 55.000 0.00 0.00 42.11 4.01
65 66 0.533755 CTCCAAGGGATAGCCTTGCG 60.534 60.000 0.00 0.00 42.11 4.85
66 67 1.526917 CCAAGGGATAGCCTTGCGG 60.527 63.158 0.00 0.00 42.11 5.69
87 88 4.452733 CCGGACCCGCTTCTCCAC 62.453 72.222 0.00 0.00 38.24 4.02
88 89 4.796231 CGGACCCGCTTCTCCACG 62.796 72.222 0.00 0.00 0.00 4.94
89 90 3.379445 GGACCCGCTTCTCCACGA 61.379 66.667 0.00 0.00 0.00 4.35
90 91 2.654877 GACCCGCTTCTCCACGAA 59.345 61.111 0.00 0.00 0.00 3.85
99 100 1.808411 TTCTCCACGAAGAACCATGC 58.192 50.000 0.00 0.00 30.38 4.06
100 101 0.976641 TCTCCACGAAGAACCATGCT 59.023 50.000 0.00 0.00 0.00 3.79
101 102 1.066858 TCTCCACGAAGAACCATGCTC 60.067 52.381 0.00 0.00 0.00 4.26
102 103 0.684535 TCCACGAAGAACCATGCTCA 59.315 50.000 0.00 0.00 0.00 4.26
103 104 1.071542 TCCACGAAGAACCATGCTCAA 59.928 47.619 0.00 0.00 0.00 3.02
104 105 1.197721 CCACGAAGAACCATGCTCAAC 59.802 52.381 0.00 0.00 0.00 3.18
105 106 1.872952 CACGAAGAACCATGCTCAACA 59.127 47.619 0.00 0.00 0.00 3.33
106 107 2.485426 CACGAAGAACCATGCTCAACAT 59.515 45.455 0.00 0.00 40.66 2.71
113 114 2.879907 ATGCTCAACATGCCGCAC 59.120 55.556 0.00 0.00 37.70 5.34
114 115 2.703798 ATGCTCAACATGCCGCACC 61.704 57.895 0.00 0.00 37.70 5.01
115 116 3.364441 GCTCAACATGCCGCACCA 61.364 61.111 0.00 0.00 0.00 4.17
116 117 2.562912 CTCAACATGCCGCACCAC 59.437 61.111 0.00 0.00 0.00 4.16
117 118 2.981560 CTCAACATGCCGCACCACC 61.982 63.158 0.00 0.00 0.00 4.61
118 119 3.293714 CAACATGCCGCACCACCA 61.294 61.111 0.00 0.00 0.00 4.17
119 120 2.985282 AACATGCCGCACCACCAG 60.985 61.111 0.00 0.00 0.00 4.00
121 122 4.720902 CATGCCGCACCACCAGGA 62.721 66.667 0.00 0.00 38.69 3.86
122 123 4.415150 ATGCCGCACCACCAGGAG 62.415 66.667 0.00 0.00 38.69 3.69
124 125 4.767255 GCCGCACCACCAGGAGAG 62.767 72.222 0.00 0.00 38.69 3.20
125 126 4.767255 CCGCACCACCAGGAGAGC 62.767 72.222 0.00 0.00 38.69 4.09
126 127 4.767255 CGCACCACCAGGAGAGCC 62.767 72.222 0.00 0.00 38.69 4.70
127 128 4.416738 GCACCACCAGGAGAGCCC 62.417 72.222 0.00 0.00 38.69 5.19
128 129 3.721706 CACCACCAGGAGAGCCCC 61.722 72.222 0.00 0.00 38.69 5.80
131 132 3.775654 CACCAGGAGAGCCCCGAC 61.776 72.222 0.00 0.00 34.66 4.79
132 133 4.316823 ACCAGGAGAGCCCCGACA 62.317 66.667 0.00 0.00 34.66 4.35
133 134 3.775654 CCAGGAGAGCCCCGACAC 61.776 72.222 0.00 0.00 34.66 3.67
134 135 2.681778 CAGGAGAGCCCCGACACT 60.682 66.667 0.00 0.00 34.66 3.55
135 136 2.363147 AGGAGAGCCCCGACACTC 60.363 66.667 0.00 0.00 34.66 3.51
136 137 2.363147 GGAGAGCCCCGACACTCT 60.363 66.667 1.36 1.36 45.85 3.24
138 139 2.363147 AGAGCCCCGACACTCTCC 60.363 66.667 0.00 0.00 38.98 3.71
139 140 2.680352 GAGCCCCGACACTCTCCA 60.680 66.667 0.00 0.00 0.00 3.86
140 141 2.997897 AGCCCCGACACTCTCCAC 60.998 66.667 0.00 0.00 0.00 4.02
141 142 3.311110 GCCCCGACACTCTCCACA 61.311 66.667 0.00 0.00 0.00 4.17
142 143 2.657237 CCCCGACACTCTCCACAC 59.343 66.667 0.00 0.00 0.00 3.82
143 144 2.657237 CCCGACACTCTCCACACC 59.343 66.667 0.00 0.00 0.00 4.16
144 145 2.207229 CCCGACACTCTCCACACCA 61.207 63.158 0.00 0.00 0.00 4.17
145 146 1.006102 CCGACACTCTCCACACCAC 60.006 63.158 0.00 0.00 0.00 4.16
146 147 1.739667 CGACACTCTCCACACCACA 59.260 57.895 0.00 0.00 0.00 4.17
147 148 0.597637 CGACACTCTCCACACCACAC 60.598 60.000 0.00 0.00 0.00 3.82
148 149 0.464036 GACACTCTCCACACCACACA 59.536 55.000 0.00 0.00 0.00 3.72
149 150 0.465705 ACACTCTCCACACCACACAG 59.534 55.000 0.00 0.00 0.00 3.66
150 151 0.882042 CACTCTCCACACCACACAGC 60.882 60.000 0.00 0.00 0.00 4.40
151 152 1.665916 CTCTCCACACCACACAGCG 60.666 63.158 0.00 0.00 0.00 5.18
152 153 2.108976 CTCCACACCACACAGCGT 59.891 61.111 0.00 0.00 0.00 5.07
153 154 1.523711 CTCCACACCACACAGCGTT 60.524 57.895 0.00 0.00 0.00 4.84
154 155 1.775039 CTCCACACCACACAGCGTTG 61.775 60.000 0.00 0.00 0.00 4.10
155 156 1.817520 CCACACCACACAGCGTTGA 60.818 57.895 6.16 0.00 0.00 3.18
156 157 1.351707 CACACCACACAGCGTTGAC 59.648 57.895 6.16 0.00 0.00 3.18
157 158 1.817941 ACACCACACAGCGTTGACC 60.818 57.895 6.16 0.00 0.00 4.02
158 159 2.587753 ACCACACAGCGTTGACCG 60.588 61.111 6.16 0.00 40.40 4.79
159 160 2.279851 CCACACAGCGTTGACCGA 60.280 61.111 6.16 0.00 39.56 4.69
160 161 2.594962 CCACACAGCGTTGACCGAC 61.595 63.158 6.16 0.00 39.56 4.79
161 162 2.279918 ACACAGCGTTGACCGACC 60.280 61.111 6.16 0.00 39.56 4.79
162 163 2.279851 CACAGCGTTGACCGACCA 60.280 61.111 6.16 0.00 39.56 4.02
163 164 2.279918 ACAGCGTTGACCGACCAC 60.280 61.111 6.16 0.00 39.56 4.16
164 165 2.029073 CAGCGTTGACCGACCACT 59.971 61.111 0.00 0.00 39.56 4.00
165 166 2.022129 CAGCGTTGACCGACCACTC 61.022 63.158 0.00 0.00 39.56 3.51
166 167 3.103911 GCGTTGACCGACCACTCG 61.104 66.667 0.00 0.00 39.56 4.18
167 168 2.333938 CGTTGACCGACCACTCGT 59.666 61.111 0.00 0.00 38.32 4.18
168 169 1.299620 CGTTGACCGACCACTCGTT 60.300 57.895 0.00 0.00 38.32 3.85
169 170 1.545614 CGTTGACCGACCACTCGTTG 61.546 60.000 0.00 0.00 38.32 4.10
170 171 1.593209 TTGACCGACCACTCGTTGC 60.593 57.895 0.00 0.00 38.32 4.17
171 172 2.023414 TTGACCGACCACTCGTTGCT 62.023 55.000 0.00 0.00 38.32 3.91
172 173 1.733399 GACCGACCACTCGTTGCTC 60.733 63.158 0.00 0.00 38.32 4.26
173 174 2.805353 CCGACCACTCGTTGCTCG 60.805 66.667 0.00 0.00 38.32 5.03
174 175 3.470567 CGACCACTCGTTGCTCGC 61.471 66.667 0.00 0.00 39.67 5.03
175 176 3.112709 GACCACTCGTTGCTCGCC 61.113 66.667 0.00 0.00 39.67 5.54
176 177 3.858868 GACCACTCGTTGCTCGCCA 62.859 63.158 0.00 0.00 39.67 5.69
177 178 2.664851 CCACTCGTTGCTCGCCAA 60.665 61.111 0.00 0.00 39.67 4.52
178 179 2.671177 CCACTCGTTGCTCGCCAAG 61.671 63.158 0.00 0.00 39.67 3.61
179 180 1.664649 CACTCGTTGCTCGCCAAGA 60.665 57.895 0.00 0.00 39.67 3.02
194 195 2.683916 AAGAGTCCATCTTGGCCGA 58.316 52.632 0.00 0.00 46.80 5.54
195 196 0.539051 AAGAGTCCATCTTGGCCGAG 59.461 55.000 14.59 14.59 46.80 4.63
196 197 1.144936 GAGTCCATCTTGGCCGAGG 59.855 63.158 20.46 5.21 37.47 4.63
197 198 2.514824 GTCCATCTTGGCCGAGGC 60.515 66.667 20.46 5.37 37.47 4.70
198 199 3.008517 TCCATCTTGGCCGAGGCA 61.009 61.111 20.46 1.50 44.11 4.75
199 200 2.194056 CCATCTTGGCCGAGGCAT 59.806 61.111 20.46 4.16 44.11 4.40
200 201 1.895707 CCATCTTGGCCGAGGCATC 60.896 63.158 20.46 0.00 44.11 3.91
201 202 1.153107 CATCTTGGCCGAGGCATCA 60.153 57.895 20.46 0.00 44.11 3.07
202 203 1.153086 ATCTTGGCCGAGGCATCAC 60.153 57.895 20.46 0.00 44.11 3.06
203 204 1.913951 ATCTTGGCCGAGGCATCACA 61.914 55.000 20.46 0.00 44.11 3.58
204 205 2.359850 TTGGCCGAGGCATCACAC 60.360 61.111 16.65 0.00 44.11 3.82
205 206 3.918253 TTGGCCGAGGCATCACACC 62.918 63.158 16.65 0.00 44.11 4.16
207 208 4.760047 GCCGAGGCATCACACCGT 62.760 66.667 9.58 0.00 41.49 4.83
208 209 2.509336 CCGAGGCATCACACCGTC 60.509 66.667 0.00 0.00 0.00 4.79
209 210 2.880879 CGAGGCATCACACCGTCG 60.881 66.667 0.00 0.00 0.00 5.12
210 211 3.188786 GAGGCATCACACCGTCGC 61.189 66.667 0.00 0.00 0.00 5.19
211 212 4.760047 AGGCATCACACCGTCGCC 62.760 66.667 0.00 0.00 43.31 5.54
230 231 4.704833 CCACCAGCCTGTCCGTGG 62.705 72.222 4.53 4.53 39.85 4.94
231 232 4.704833 CACCAGCCTGTCCGTGGG 62.705 72.222 0.00 0.00 35.48 4.61
238 239 4.379243 CTGTCCGTGGGCTCGCTT 62.379 66.667 0.00 0.00 0.00 4.68
239 240 4.373116 TGTCCGTGGGCTCGCTTC 62.373 66.667 0.00 0.00 0.00 3.86
249 250 4.441695 CTCGCTTCGCTGCCTCCA 62.442 66.667 0.00 0.00 0.00 3.86
250 251 4.441695 TCGCTTCGCTGCCTCCAG 62.442 66.667 0.00 0.00 42.13 3.86
251 252 4.441695 CGCTTCGCTGCCTCCAGA 62.442 66.667 0.00 0.00 41.77 3.86
252 253 2.817396 GCTTCGCTGCCTCCAGAC 60.817 66.667 0.00 0.00 41.77 3.51
253 254 2.507992 CTTCGCTGCCTCCAGACG 60.508 66.667 0.00 0.00 41.77 4.18
254 255 3.997064 CTTCGCTGCCTCCAGACGG 62.997 68.421 0.00 0.00 41.77 4.79
261 262 4.394712 CCTCCAGACGGCACCACC 62.395 72.222 0.00 0.00 0.00 4.61
280 281 4.003788 CCACCCGAACTCGCCACT 62.004 66.667 0.00 0.00 38.18 4.00
281 282 2.030562 CACCCGAACTCGCCACTT 59.969 61.111 0.00 0.00 38.18 3.16
282 283 2.027625 CACCCGAACTCGCCACTTC 61.028 63.158 0.00 0.00 38.18 3.01
283 284 2.342279 CCCGAACTCGCCACTTCA 59.658 61.111 0.00 0.00 38.18 3.02
284 285 2.027625 CCCGAACTCGCCACTTCAC 61.028 63.158 0.00 0.00 38.18 3.18
285 286 2.027625 CCGAACTCGCCACTTCACC 61.028 63.158 0.00 0.00 38.18 4.02
286 287 2.372690 CGAACTCGCCACTTCACCG 61.373 63.158 0.00 0.00 0.00 4.94
287 288 2.665185 AACTCGCCACTTCACCGC 60.665 61.111 0.00 0.00 0.00 5.68
288 289 3.165160 AACTCGCCACTTCACCGCT 62.165 57.895 0.00 0.00 0.00 5.52
289 290 3.114616 CTCGCCACTTCACCGCTG 61.115 66.667 0.00 0.00 0.00 5.18
293 294 3.052082 CCACTTCACCGCTGCCAG 61.052 66.667 0.00 0.00 0.00 4.85
294 295 3.730761 CACTTCACCGCTGCCAGC 61.731 66.667 6.63 6.63 38.02 4.85
295 296 3.946201 ACTTCACCGCTGCCAGCT 61.946 61.111 15.80 0.00 39.60 4.24
296 297 3.123620 CTTCACCGCTGCCAGCTC 61.124 66.667 15.80 0.00 39.60 4.09
297 298 4.704833 TTCACCGCTGCCAGCTCC 62.705 66.667 15.80 0.00 39.60 4.70
873 874 8.324163 ACTAACTTGTGCTTAATTTCCACTAG 57.676 34.615 10.38 10.38 37.99 2.57
929 930 2.161410 GCGTACAAACATCATTCCAGCA 59.839 45.455 0.00 0.00 0.00 4.41
933 934 4.460948 ACAAACATCATTCCAGCATTCC 57.539 40.909 0.00 0.00 0.00 3.01
934 935 4.091549 ACAAACATCATTCCAGCATTCCT 58.908 39.130 0.00 0.00 0.00 3.36
935 936 4.159135 ACAAACATCATTCCAGCATTCCTC 59.841 41.667 0.00 0.00 0.00 3.71
936 937 2.941480 ACATCATTCCAGCATTCCTCC 58.059 47.619 0.00 0.00 0.00 4.30
937 938 2.242965 ACATCATTCCAGCATTCCTCCA 59.757 45.455 0.00 0.00 0.00 3.86
964 968 1.211212 TCCAGCATTGTGATCTCCCAG 59.789 52.381 0.00 0.00 0.00 4.45
973 977 2.087646 GTGATCTCCCAGAAAGCCAAC 58.912 52.381 0.00 0.00 0.00 3.77
981 985 1.247567 CAGAAAGCCAACCACGGAAT 58.752 50.000 0.00 0.00 0.00 3.01
984 988 1.611491 GAAAGCCAACCACGGAATCAA 59.389 47.619 0.00 0.00 0.00 2.57
1060 1229 3.134127 GGAGGTGGTTCATGGCGC 61.134 66.667 0.00 0.00 0.00 6.53
1252 1421 3.842923 CGCCATGGCTCGTCCTCT 61.843 66.667 33.07 0.00 39.32 3.69
1278 1447 2.676471 GCCGCAATGAACCTGGGT 60.676 61.111 0.00 0.00 0.00 4.51
1506 1675 2.055042 CACCCAGCTCTACCTCGCT 61.055 63.158 0.00 0.00 36.83 4.93
1515 1684 2.015587 CTCTACCTCGCTTTCTACGGT 58.984 52.381 0.00 0.00 0.00 4.83
1518 1687 0.896940 ACCTCGCTTTCTACGGTGGA 60.897 55.000 0.00 0.00 0.00 4.02
1523 1692 1.590147 CTTTCTACGGTGGAGGCGT 59.410 57.895 0.00 0.00 0.00 5.68
1536 1705 3.986006 GGCGTCGGTGACACCAGA 61.986 66.667 24.18 18.06 38.47 3.86
1836 2054 1.013596 CCGCACTGTTCAAGAACACA 58.986 50.000 11.34 0.00 45.42 3.72
1838 2056 1.592110 CGCACTGTTCAAGAACACACG 60.592 52.381 11.34 11.06 45.42 4.49
1849 2067 3.454587 AACACACGGGAAGCGCAGA 62.455 57.895 11.47 0.00 0.00 4.26
1875 2093 4.130554 ACCGTGGCCACCAAACCA 62.131 61.111 29.95 0.00 34.18 3.67
2538 2796 1.533469 CCGGGAAGAGGTTCGTGACT 61.533 60.000 0.00 0.00 32.92 3.41
2658 2916 1.447317 GATTCTACGCGGGGGACGTA 61.447 60.000 12.47 0.00 46.52 3.57
2692 2950 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2702 2960 2.603776 GGAGGAGACGGTGGTGGT 60.604 66.667 0.00 0.00 0.00 4.16
2706 2964 2.513259 GGAGACGGTGGTGGTTGGA 61.513 63.158 0.00 0.00 0.00 3.53
2765 3023 4.261447 CGGTTAAAAGTGAAAGGGAGTTGG 60.261 45.833 0.00 0.00 0.00 3.77
2766 3024 4.500887 GGTTAAAAGTGAAAGGGAGTTGGC 60.501 45.833 0.00 0.00 0.00 4.52
2767 3025 1.318576 AAAGTGAAAGGGAGTTGGCG 58.681 50.000 0.00 0.00 0.00 5.69
2768 3026 1.172812 AAGTGAAAGGGAGTTGGCGC 61.173 55.000 0.00 0.00 0.00 6.53
2769 3027 1.600916 GTGAAAGGGAGTTGGCGCT 60.601 57.895 7.64 0.00 0.00 5.92
2770 3028 0.321298 GTGAAAGGGAGTTGGCGCTA 60.321 55.000 7.64 0.00 0.00 4.26
2771 3029 0.398696 TGAAAGGGAGTTGGCGCTAA 59.601 50.000 7.64 4.03 0.00 3.09
2772 3030 1.087501 GAAAGGGAGTTGGCGCTAAG 58.912 55.000 6.39 0.00 0.00 2.18
2773 3031 0.690762 AAAGGGAGTTGGCGCTAAGA 59.309 50.000 6.39 0.00 0.00 2.10
2774 3032 0.250513 AAGGGAGTTGGCGCTAAGAG 59.749 55.000 6.39 0.00 0.00 2.85
2775 3033 1.815840 GGGAGTTGGCGCTAAGAGC 60.816 63.158 6.39 0.00 38.02 4.09
2776 3034 1.079127 GGAGTTGGCGCTAAGAGCA 60.079 57.895 6.39 0.00 42.58 4.26
2777 3035 0.462759 GGAGTTGGCGCTAAGAGCAT 60.463 55.000 6.39 0.00 42.58 3.79
2778 3036 0.933796 GAGTTGGCGCTAAGAGCATC 59.066 55.000 6.39 0.00 42.58 3.91
2804 3062 9.090692 CTGATATAAAAATCAGCCCAAAAACTG 57.909 33.333 1.24 0.00 44.63 3.16
2805 3063 7.548780 TGATATAAAAATCAGCCCAAAAACTGC 59.451 33.333 0.00 0.00 33.80 4.40
2806 3064 3.843893 AAAATCAGCCCAAAAACTGCT 57.156 38.095 0.00 0.00 33.80 4.24
2807 3065 3.843893 AAATCAGCCCAAAAACTGCTT 57.156 38.095 0.00 0.00 33.80 3.91
2808 3066 2.825861 ATCAGCCCAAAAACTGCTTG 57.174 45.000 0.00 0.00 33.80 4.01
2809 3067 1.774110 TCAGCCCAAAAACTGCTTGA 58.226 45.000 0.00 0.00 33.80 3.02
2810 3068 2.318908 TCAGCCCAAAAACTGCTTGAT 58.681 42.857 0.00 0.00 33.80 2.57
2811 3069 2.036217 TCAGCCCAAAAACTGCTTGATG 59.964 45.455 0.00 0.00 33.80 3.07
2812 3070 1.150827 GCCCAAAAACTGCTTGATGC 58.849 50.000 0.00 0.00 43.25 3.91
2832 3090 8.999220 TGATGCAAATTATACATCAGCAAAAA 57.001 26.923 11.76 0.00 43.85 1.94
2833 3091 8.871862 TGATGCAAATTATACATCAGCAAAAAC 58.128 29.630 11.76 0.00 43.85 2.43
2834 3092 7.275697 TGCAAATTATACATCAGCAAAAACG 57.724 32.000 0.00 0.00 0.00 3.60
2835 3093 6.309980 TGCAAATTATACATCAGCAAAAACGG 59.690 34.615 0.00 0.00 0.00 4.44
2836 3094 6.237808 GCAAATTATACATCAGCAAAAACGGG 60.238 38.462 0.00 0.00 0.00 5.28
2837 3095 6.767524 AATTATACATCAGCAAAAACGGGA 57.232 33.333 0.00 0.00 0.00 5.14
2838 3096 6.959639 ATTATACATCAGCAAAAACGGGAT 57.040 33.333 0.00 0.00 0.00 3.85
2839 3097 6.767524 TTATACATCAGCAAAAACGGGATT 57.232 33.333 0.00 0.00 0.00 3.01
2840 3098 5.659440 ATACATCAGCAAAAACGGGATTT 57.341 34.783 0.00 0.00 0.00 2.17
2841 3099 4.335400 ACATCAGCAAAAACGGGATTTT 57.665 36.364 0.00 0.00 42.55 1.82
2843 3101 5.848406 ACATCAGCAAAAACGGGATTTTTA 58.152 33.333 0.00 0.00 46.59 1.52
2844 3102 5.694458 ACATCAGCAAAAACGGGATTTTTAC 59.306 36.000 0.00 0.00 46.59 2.01
2845 3103 5.263968 TCAGCAAAAACGGGATTTTTACA 57.736 34.783 0.00 0.00 46.59 2.41
2846 3104 5.848406 TCAGCAAAAACGGGATTTTTACAT 58.152 33.333 0.00 0.00 46.59 2.29
2847 3105 5.923684 TCAGCAAAAACGGGATTTTTACATC 59.076 36.000 0.00 0.00 46.59 3.06
2848 3106 5.694006 CAGCAAAAACGGGATTTTTACATCA 59.306 36.000 0.00 0.00 46.59 3.07
2849 3107 5.694458 AGCAAAAACGGGATTTTTACATCAC 59.306 36.000 0.00 0.00 46.59 3.06
2850 3108 5.107259 GCAAAAACGGGATTTTTACATCACC 60.107 40.000 0.00 0.00 46.59 4.02
2851 3109 4.428615 AAACGGGATTTTTACATCACCG 57.571 40.909 0.00 0.00 40.26 4.94
2852 3110 3.337694 ACGGGATTTTTACATCACCGA 57.662 42.857 7.24 0.00 38.38 4.69
2853 3111 3.677190 ACGGGATTTTTACATCACCGAA 58.323 40.909 7.24 0.00 38.38 4.30
2854 3112 4.073549 ACGGGATTTTTACATCACCGAAA 58.926 39.130 7.24 0.00 38.38 3.46
2855 3113 4.155280 ACGGGATTTTTACATCACCGAAAG 59.845 41.667 7.24 0.00 38.38 2.62
2856 3114 4.155280 CGGGATTTTTACATCACCGAAAGT 59.845 41.667 0.00 0.00 38.38 2.66
2866 3124 1.226746 CACCGAAAGTGTCCAACTCC 58.773 55.000 0.00 0.00 41.93 3.85
2867 3125 0.834612 ACCGAAAGTGTCCAACTCCA 59.165 50.000 0.00 0.00 38.56 3.86
2868 3126 1.210967 ACCGAAAGTGTCCAACTCCAA 59.789 47.619 0.00 0.00 38.56 3.53
2869 3127 1.602377 CCGAAAGTGTCCAACTCCAAC 59.398 52.381 0.00 0.00 38.56 3.77
2870 3128 2.285083 CGAAAGTGTCCAACTCCAACA 58.715 47.619 0.00 0.00 38.56 3.33
2871 3129 2.287915 CGAAAGTGTCCAACTCCAACAG 59.712 50.000 0.00 0.00 38.56 3.16
2872 3130 2.348411 AAGTGTCCAACTCCAACAGG 57.652 50.000 0.00 0.00 38.56 4.00
2873 3131 1.213296 AGTGTCCAACTCCAACAGGT 58.787 50.000 0.00 0.00 31.64 4.00
2874 3132 2.404559 AGTGTCCAACTCCAACAGGTA 58.595 47.619 0.00 0.00 31.64 3.08
2875 3133 2.775384 AGTGTCCAACTCCAACAGGTAA 59.225 45.455 0.00 0.00 31.64 2.85
2876 3134 3.394606 AGTGTCCAACTCCAACAGGTAAT 59.605 43.478 0.00 0.00 31.64 1.89
2877 3135 3.502211 GTGTCCAACTCCAACAGGTAATG 59.498 47.826 0.00 0.00 0.00 1.90
2878 3136 3.137544 TGTCCAACTCCAACAGGTAATGT 59.862 43.478 0.00 0.00 46.97 2.71
2879 3137 3.502211 GTCCAACTCCAACAGGTAATGTG 59.498 47.826 0.00 0.00 43.00 3.21
2880 3138 3.137544 TCCAACTCCAACAGGTAATGTGT 59.862 43.478 0.00 0.00 43.00 3.72
2881 3139 3.888930 CCAACTCCAACAGGTAATGTGTT 59.111 43.478 0.00 0.00 43.00 3.32
2882 3140 4.023193 CCAACTCCAACAGGTAATGTGTTC 60.023 45.833 0.00 0.00 43.00 3.18
2883 3141 4.706842 ACTCCAACAGGTAATGTGTTCT 57.293 40.909 0.00 0.00 43.00 3.01
2884 3142 5.818678 ACTCCAACAGGTAATGTGTTCTA 57.181 39.130 0.00 0.00 43.00 2.10
2885 3143 5.794894 ACTCCAACAGGTAATGTGTTCTAG 58.205 41.667 0.00 0.00 43.00 2.43
2886 3144 5.542635 ACTCCAACAGGTAATGTGTTCTAGA 59.457 40.000 0.00 0.00 43.00 2.43
2887 3145 6.213600 ACTCCAACAGGTAATGTGTTCTAGAT 59.786 38.462 0.00 0.00 43.00 1.98
2888 3146 7.016153 TCCAACAGGTAATGTGTTCTAGATT 57.984 36.000 0.00 0.00 43.00 2.40
2889 3147 7.103641 TCCAACAGGTAATGTGTTCTAGATTC 58.896 38.462 0.00 0.00 43.00 2.52
2890 3148 7.038302 TCCAACAGGTAATGTGTTCTAGATTCT 60.038 37.037 0.00 0.00 43.00 2.40
2891 3149 7.607991 CCAACAGGTAATGTGTTCTAGATTCTT 59.392 37.037 0.00 0.00 43.00 2.52
2892 3150 9.003658 CAACAGGTAATGTGTTCTAGATTCTTT 57.996 33.333 0.00 0.00 43.00 2.52
2893 3151 8.779354 ACAGGTAATGTGTTCTAGATTCTTTC 57.221 34.615 0.00 0.00 41.91 2.62
2894 3152 8.598041 ACAGGTAATGTGTTCTAGATTCTTTCT 58.402 33.333 0.00 0.00 41.91 2.52
2895 3153 9.442047 CAGGTAATGTGTTCTAGATTCTTTCTT 57.558 33.333 0.00 0.00 35.79 2.52
2909 3167 8.850007 AGATTCTTTCTTTCTAACTAACCACC 57.150 34.615 0.00 0.00 0.00 4.61
2910 3168 7.883833 AGATTCTTTCTTTCTAACTAACCACCC 59.116 37.037 0.00 0.00 0.00 4.61
2911 3169 5.872963 TCTTTCTTTCTAACTAACCACCCC 58.127 41.667 0.00 0.00 0.00 4.95
2912 3170 4.645863 TTCTTTCTAACTAACCACCCCC 57.354 45.455 0.00 0.00 0.00 5.40
2913 3171 3.878086 TCTTTCTAACTAACCACCCCCT 58.122 45.455 0.00 0.00 0.00 4.79
2914 3172 3.585732 TCTTTCTAACTAACCACCCCCTG 59.414 47.826 0.00 0.00 0.00 4.45
2915 3173 3.278987 TTCTAACTAACCACCCCCTGA 57.721 47.619 0.00 0.00 0.00 3.86
2916 3174 3.502051 TCTAACTAACCACCCCCTGAT 57.498 47.619 0.00 0.00 0.00 2.90
2917 3175 3.810623 TCTAACTAACCACCCCCTGATT 58.189 45.455 0.00 0.00 0.00 2.57
2918 3176 4.180723 TCTAACTAACCACCCCCTGATTT 58.819 43.478 0.00 0.00 0.00 2.17
2919 3177 3.915346 AACTAACCACCCCCTGATTTT 57.085 42.857 0.00 0.00 0.00 1.82
2920 3178 3.451402 ACTAACCACCCCCTGATTTTC 57.549 47.619 0.00 0.00 0.00 2.29
2921 3179 2.719705 ACTAACCACCCCCTGATTTTCA 59.280 45.455 0.00 0.00 0.00 2.69
2922 3180 2.009681 AACCACCCCCTGATTTTCAC 57.990 50.000 0.00 0.00 0.00 3.18
2923 3181 0.251165 ACCACCCCCTGATTTTCACG 60.251 55.000 0.00 0.00 0.00 4.35
2924 3182 0.965363 CCACCCCCTGATTTTCACGG 60.965 60.000 0.00 0.00 0.00 4.94
2925 3183 0.965363 CACCCCCTGATTTTCACGGG 60.965 60.000 4.99 4.99 40.88 5.28
2926 3184 1.137594 ACCCCCTGATTTTCACGGGA 61.138 55.000 11.72 0.00 42.95 5.14
2927 3185 0.394352 CCCCCTGATTTTCACGGGAG 60.394 60.000 11.72 1.28 42.95 4.30
2928 3186 0.328258 CCCCTGATTTTCACGGGAGT 59.672 55.000 5.86 0.00 42.95 3.85
2938 3196 4.316823 ACGGGAGTGGGCCTCTCA 62.317 66.667 30.55 3.73 41.13 3.27
2939 3197 2.765807 CGGGAGTGGGCCTCTCAT 60.766 66.667 30.55 1.73 41.13 2.90
2940 3198 2.801631 CGGGAGTGGGCCTCTCATC 61.802 68.421 30.55 21.90 41.13 2.92
2941 3199 2.447714 GGGAGTGGGCCTCTCATCC 61.448 68.421 30.55 21.69 40.73 3.51
2942 3200 2.447714 GGAGTGGGCCTCTCATCCC 61.448 68.421 30.55 14.96 42.93 3.85
2943 3201 2.367512 AGTGGGCCTCTCATCCCC 60.368 66.667 4.53 0.00 41.92 4.81
2944 3202 2.367512 GTGGGCCTCTCATCCCCT 60.368 66.667 4.53 0.00 41.92 4.79
2945 3203 2.003548 GTGGGCCTCTCATCCCCTT 61.004 63.158 4.53 0.00 41.92 3.95
2946 3204 0.694444 GTGGGCCTCTCATCCCCTTA 60.694 60.000 4.53 0.00 41.92 2.69
2947 3205 0.045623 TGGGCCTCTCATCCCCTTAA 59.954 55.000 4.53 0.00 41.92 1.85
2948 3206 1.346465 TGGGCCTCTCATCCCCTTAAT 60.346 52.381 4.53 0.00 41.92 1.40
2949 3207 1.352687 GGGCCTCTCATCCCCTTAATC 59.647 57.143 0.84 0.00 36.50 1.75
2950 3208 2.343625 GGCCTCTCATCCCCTTAATCT 58.656 52.381 0.00 0.00 0.00 2.40
2951 3209 2.304470 GGCCTCTCATCCCCTTAATCTC 59.696 54.545 0.00 0.00 0.00 2.75
2952 3210 2.304470 GCCTCTCATCCCCTTAATCTCC 59.696 54.545 0.00 0.00 0.00 3.71
2953 3211 3.591789 CCTCTCATCCCCTTAATCTCCA 58.408 50.000 0.00 0.00 0.00 3.86
2954 3212 3.976654 CCTCTCATCCCCTTAATCTCCAA 59.023 47.826 0.00 0.00 0.00 3.53
2955 3213 4.600983 CCTCTCATCCCCTTAATCTCCAAT 59.399 45.833 0.00 0.00 0.00 3.16
2956 3214 5.280419 CCTCTCATCCCCTTAATCTCCAATC 60.280 48.000 0.00 0.00 0.00 2.67
2957 3215 5.226803 TCTCATCCCCTTAATCTCCAATCA 58.773 41.667 0.00 0.00 0.00 2.57
2958 3216 5.671735 TCTCATCCCCTTAATCTCCAATCAA 59.328 40.000 0.00 0.00 0.00 2.57
2959 3217 6.160282 TCTCATCCCCTTAATCTCCAATCAAA 59.840 38.462 0.00 0.00 0.00 2.69
2960 3218 6.740693 TCATCCCCTTAATCTCCAATCAAAA 58.259 36.000 0.00 0.00 0.00 2.44
2961 3219 7.364627 TCATCCCCTTAATCTCCAATCAAAAT 58.635 34.615 0.00 0.00 0.00 1.82
2962 3220 7.845800 TCATCCCCTTAATCTCCAATCAAAATT 59.154 33.333 0.00 0.00 0.00 1.82
2963 3221 8.488668 CATCCCCTTAATCTCCAATCAAAATTT 58.511 33.333 0.00 0.00 0.00 1.82
2964 3222 9.728100 ATCCCCTTAATCTCCAATCAAAATTTA 57.272 29.630 0.00 0.00 0.00 1.40
2965 3223 8.977412 TCCCCTTAATCTCCAATCAAAATTTAC 58.023 33.333 0.00 0.00 0.00 2.01
2966 3224 8.204160 CCCCTTAATCTCCAATCAAAATTTACC 58.796 37.037 0.00 0.00 0.00 2.85
2967 3225 8.981659 CCCTTAATCTCCAATCAAAATTTACCT 58.018 33.333 0.00 0.00 0.00 3.08
2981 3239 9.413048 TCAAAATTTACCTATTTGTAAAAGCCG 57.587 29.630 0.00 0.00 42.26 5.52
2982 3240 9.198837 CAAAATTTACCTATTTGTAAAAGCCGT 57.801 29.630 0.00 0.00 42.26 5.68
2983 3241 8.751302 AAATTTACCTATTTGTAAAAGCCGTG 57.249 30.769 0.00 0.00 42.26 4.94
2984 3242 6.880942 TTTACCTATTTGTAAAAGCCGTGT 57.119 33.333 0.00 0.00 37.66 4.49
2985 3243 7.976135 TTTACCTATTTGTAAAAGCCGTGTA 57.024 32.000 0.00 0.00 37.66 2.90
2986 3244 7.976135 TTACCTATTTGTAAAAGCCGTGTAA 57.024 32.000 0.00 0.00 0.00 2.41
2987 3245 6.880942 ACCTATTTGTAAAAGCCGTGTAAA 57.119 33.333 0.00 0.00 0.00 2.01
2988 3246 6.671190 ACCTATTTGTAAAAGCCGTGTAAAC 58.329 36.000 0.00 0.00 0.00 2.01
2989 3247 6.088173 CCTATTTGTAAAAGCCGTGTAAACC 58.912 40.000 0.00 0.00 0.00 3.27
2990 3248 5.777850 ATTTGTAAAAGCCGTGTAAACCT 57.222 34.783 0.00 0.00 0.00 3.50
2991 3249 6.880942 ATTTGTAAAAGCCGTGTAAACCTA 57.119 33.333 0.00 0.00 0.00 3.08
2992 3250 6.880942 TTTGTAAAAGCCGTGTAAACCTAT 57.119 33.333 0.00 0.00 0.00 2.57
2993 3251 5.866335 TGTAAAAGCCGTGTAAACCTATG 57.134 39.130 0.00 0.00 0.00 2.23
2994 3252 5.307204 TGTAAAAGCCGTGTAAACCTATGT 58.693 37.500 0.00 0.00 0.00 2.29
2995 3253 6.462500 TGTAAAAGCCGTGTAAACCTATGTA 58.538 36.000 0.00 0.00 0.00 2.29
2996 3254 7.104939 TGTAAAAGCCGTGTAAACCTATGTAT 58.895 34.615 0.00 0.00 0.00 2.29
2997 3255 6.431198 AAAAGCCGTGTAAACCTATGTATG 57.569 37.500 0.00 0.00 0.00 2.39
2998 3256 4.748277 AGCCGTGTAAACCTATGTATGT 57.252 40.909 0.00 0.00 0.00 2.29
2999 3257 4.439057 AGCCGTGTAAACCTATGTATGTG 58.561 43.478 0.00 0.00 0.00 3.21
3000 3258 4.081309 AGCCGTGTAAACCTATGTATGTGT 60.081 41.667 0.00 0.00 0.00 3.72
3001 3259 5.127519 AGCCGTGTAAACCTATGTATGTGTA 59.872 40.000 0.00 0.00 0.00 2.90
3002 3260 5.461078 GCCGTGTAAACCTATGTATGTGTAG 59.539 44.000 0.00 0.00 0.00 2.74
3003 3261 5.461078 CCGTGTAAACCTATGTATGTGTAGC 59.539 44.000 0.00 0.00 0.00 3.58
3004 3262 6.037726 CGTGTAAACCTATGTATGTGTAGCA 58.962 40.000 0.00 0.00 0.00 3.49
3005 3263 6.700081 CGTGTAAACCTATGTATGTGTAGCAT 59.300 38.462 0.00 0.00 41.42 3.79
3006 3264 7.223971 CGTGTAAACCTATGTATGTGTAGCATT 59.776 37.037 0.00 0.00 38.94 3.56
3007 3265 9.537192 GTGTAAACCTATGTATGTGTAGCATTA 57.463 33.333 0.00 0.00 38.94 1.90
3008 3266 9.537192 TGTAAACCTATGTATGTGTAGCATTAC 57.463 33.333 0.00 0.00 38.94 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.374758 GGACCTTGTCAGAGGCACG 60.375 63.158 0.00 0.00 40.65 5.34
1 2 0.321122 CTGGACCTTGTCAGAGGCAC 60.321 60.000 0.00 0.00 40.65 5.01
2 3 1.483595 CCTGGACCTTGTCAGAGGCA 61.484 60.000 0.00 0.00 40.65 4.75
3 4 1.194781 TCCTGGACCTTGTCAGAGGC 61.195 60.000 0.00 0.00 40.65 4.70
4 5 0.610687 GTCCTGGACCTTGTCAGAGG 59.389 60.000 16.14 5.57 42.75 3.69
15 16 3.399181 TCATGGCCGGTCCTGGAC 61.399 66.667 18.65 18.65 37.64 4.02
16 17 3.399181 GTCATGGCCGGTCCTGGA 61.399 66.667 11.63 7.97 35.26 3.86
17 18 4.838152 CGTCATGGCCGGTCCTGG 62.838 72.222 11.63 5.90 35.26 4.45
34 35 4.329545 TTGGAGTGGGCGACTGGC 62.330 66.667 6.97 0.00 42.51 4.85
35 36 2.046892 CTTGGAGTGGGCGACTGG 60.047 66.667 6.97 0.00 33.83 4.00
36 37 2.046892 CCTTGGAGTGGGCGACTG 60.047 66.667 6.97 0.00 33.83 3.51
37 38 3.322466 CCCTTGGAGTGGGCGACT 61.322 66.667 0.31 0.31 37.99 4.18
38 39 1.335132 TATCCCTTGGAGTGGGCGAC 61.335 60.000 0.00 0.00 44.23 5.19
39 40 1.002403 TATCCCTTGGAGTGGGCGA 59.998 57.895 0.00 0.00 44.23 5.54
40 41 1.447643 CTATCCCTTGGAGTGGGCG 59.552 63.158 0.00 0.00 44.23 6.13
41 42 1.149401 GCTATCCCTTGGAGTGGGC 59.851 63.158 0.00 0.00 44.23 5.36
42 43 0.695803 AGGCTATCCCTTGGAGTGGG 60.696 60.000 0.00 0.00 43.06 4.61
43 44 2.936823 AGGCTATCCCTTGGAGTGG 58.063 57.895 0.00 0.00 43.06 4.00
70 71 4.452733 GTGGAGAAGCGGGTCCGG 62.453 72.222 11.60 0.00 40.19 5.14
71 72 4.796231 CGTGGAGAAGCGGGTCCG 62.796 72.222 4.85 4.85 43.09 4.79
72 73 2.939261 TTCGTGGAGAAGCGGGTCC 61.939 63.158 0.00 0.00 34.26 4.46
73 74 2.654877 TTCGTGGAGAAGCGGGTC 59.345 61.111 0.00 0.00 34.26 4.46
80 81 1.347707 AGCATGGTTCTTCGTGGAGAA 59.652 47.619 0.00 0.00 37.31 2.87
81 82 0.976641 AGCATGGTTCTTCGTGGAGA 59.023 50.000 0.00 0.00 0.00 3.71
82 83 1.338105 TGAGCATGGTTCTTCGTGGAG 60.338 52.381 0.00 0.00 0.00 3.86
83 84 0.684535 TGAGCATGGTTCTTCGTGGA 59.315 50.000 0.00 0.00 0.00 4.02
84 85 1.197721 GTTGAGCATGGTTCTTCGTGG 59.802 52.381 0.00 0.00 0.00 4.94
85 86 1.872952 TGTTGAGCATGGTTCTTCGTG 59.127 47.619 0.00 0.00 0.00 4.35
86 87 2.254546 TGTTGAGCATGGTTCTTCGT 57.745 45.000 0.00 0.00 0.00 3.85
96 97 2.703798 GGTGCGGCATGTTGAGCAT 61.704 57.895 5.72 0.00 41.88 3.79
97 98 3.364441 GGTGCGGCATGTTGAGCA 61.364 61.111 5.72 0.00 37.26 4.26
98 99 3.364441 TGGTGCGGCATGTTGAGC 61.364 61.111 5.72 0.00 0.00 4.26
99 100 2.562912 GTGGTGCGGCATGTTGAG 59.437 61.111 5.72 0.00 0.00 3.02
100 101 2.983030 GGTGGTGCGGCATGTTGA 60.983 61.111 5.72 0.00 0.00 3.18
101 102 3.271706 CTGGTGGTGCGGCATGTTG 62.272 63.158 5.72 0.00 0.00 3.33
102 103 2.985282 CTGGTGGTGCGGCATGTT 60.985 61.111 5.72 0.00 0.00 2.71
104 105 4.720902 TCCTGGTGGTGCGGCATG 62.721 66.667 5.72 0.00 34.23 4.06
105 106 4.415150 CTCCTGGTGGTGCGGCAT 62.415 66.667 5.72 0.00 34.23 4.40
107 108 4.767255 CTCTCCTGGTGGTGCGGC 62.767 72.222 0.00 0.00 34.23 6.53
108 109 4.767255 GCTCTCCTGGTGGTGCGG 62.767 72.222 0.00 0.00 34.23 5.69
109 110 4.767255 GGCTCTCCTGGTGGTGCG 62.767 72.222 0.00 0.00 34.23 5.34
110 111 4.416738 GGGCTCTCCTGGTGGTGC 62.417 72.222 0.00 0.10 34.23 5.01
111 112 3.721706 GGGGCTCTCCTGGTGGTG 61.722 72.222 0.00 0.00 35.33 4.17
114 115 3.775654 GTCGGGGCTCTCCTGGTG 61.776 72.222 0.00 0.00 42.31 4.17
115 116 4.316823 TGTCGGGGCTCTCCTGGT 62.317 66.667 0.00 0.00 42.31 4.00
116 117 3.775654 GTGTCGGGGCTCTCCTGG 61.776 72.222 0.00 0.00 42.31 4.45
117 118 2.681778 AGTGTCGGGGCTCTCCTG 60.682 66.667 0.00 0.00 43.43 3.86
118 119 2.363147 GAGTGTCGGGGCTCTCCT 60.363 66.667 0.00 0.00 35.33 3.69
119 120 2.363147 AGAGTGTCGGGGCTCTCC 60.363 66.667 0.00 0.00 37.51 3.71
121 122 2.363147 GGAGAGTGTCGGGGCTCT 60.363 66.667 3.84 3.84 43.95 4.09
122 123 2.680352 TGGAGAGTGTCGGGGCTC 60.680 66.667 0.00 0.00 0.00 4.70
123 124 2.997897 GTGGAGAGTGTCGGGGCT 60.998 66.667 0.00 0.00 0.00 5.19
124 125 3.311110 TGTGGAGAGTGTCGGGGC 61.311 66.667 0.00 0.00 0.00 5.80
125 126 2.657237 GTGTGGAGAGTGTCGGGG 59.343 66.667 0.00 0.00 0.00 5.73
126 127 2.207229 TGGTGTGGAGAGTGTCGGG 61.207 63.158 0.00 0.00 0.00 5.14
127 128 1.006102 GTGGTGTGGAGAGTGTCGG 60.006 63.158 0.00 0.00 0.00 4.79
128 129 0.597637 GTGTGGTGTGGAGAGTGTCG 60.598 60.000 0.00 0.00 0.00 4.35
129 130 0.464036 TGTGTGGTGTGGAGAGTGTC 59.536 55.000 0.00 0.00 0.00 3.67
130 131 0.465705 CTGTGTGGTGTGGAGAGTGT 59.534 55.000 0.00 0.00 0.00 3.55
131 132 0.882042 GCTGTGTGGTGTGGAGAGTG 60.882 60.000 0.00 0.00 0.00 3.51
132 133 1.447643 GCTGTGTGGTGTGGAGAGT 59.552 57.895 0.00 0.00 0.00 3.24
133 134 1.665916 CGCTGTGTGGTGTGGAGAG 60.666 63.158 0.00 0.00 0.00 3.20
134 135 1.966901 AACGCTGTGTGGTGTGGAGA 61.967 55.000 0.00 0.00 0.00 3.71
135 136 1.523711 AACGCTGTGTGGTGTGGAG 60.524 57.895 0.00 0.00 0.00 3.86
136 137 1.817520 CAACGCTGTGTGGTGTGGA 60.818 57.895 0.00 0.00 0.00 4.02
137 138 1.817520 TCAACGCTGTGTGGTGTGG 60.818 57.895 0.00 0.00 32.04 4.17
138 139 1.351707 GTCAACGCTGTGTGGTGTG 59.648 57.895 0.00 0.00 32.04 3.82
139 140 1.817941 GGTCAACGCTGTGTGGTGT 60.818 57.895 0.00 0.00 32.04 4.16
140 141 2.881266 CGGTCAACGCTGTGTGGTG 61.881 63.158 0.00 0.00 34.82 4.17
141 142 2.587753 CGGTCAACGCTGTGTGGT 60.588 61.111 0.00 0.00 34.82 4.16
142 143 2.279851 TCGGTCAACGCTGTGTGG 60.280 61.111 0.00 0.00 43.86 4.17
143 144 2.594962 GGTCGGTCAACGCTGTGTG 61.595 63.158 0.00 0.00 43.86 3.82
144 145 2.279918 GGTCGGTCAACGCTGTGT 60.280 61.111 0.00 0.00 43.86 3.72
145 146 2.279851 TGGTCGGTCAACGCTGTG 60.280 61.111 0.00 0.00 43.86 3.66
146 147 2.279918 GTGGTCGGTCAACGCTGT 60.280 61.111 0.00 0.00 43.86 4.40
147 148 2.022129 GAGTGGTCGGTCAACGCTG 61.022 63.158 0.00 0.00 43.86 5.18
148 149 2.338984 GAGTGGTCGGTCAACGCT 59.661 61.111 0.00 0.00 43.86 5.07
149 150 3.103911 CGAGTGGTCGGTCAACGC 61.104 66.667 0.00 0.00 42.87 4.84
150 151 1.299620 AACGAGTGGTCGGTCAACG 60.300 57.895 0.00 0.00 45.31 4.10
151 152 1.828331 GCAACGAGTGGTCGGTCAAC 61.828 60.000 0.00 0.00 45.31 3.18
152 153 1.593209 GCAACGAGTGGTCGGTCAA 60.593 57.895 0.00 0.00 45.31 3.18
153 154 2.028484 GCAACGAGTGGTCGGTCA 59.972 61.111 0.00 0.00 45.31 4.02
154 155 1.733399 GAGCAACGAGTGGTCGGTC 60.733 63.158 7.17 0.00 45.31 4.79
159 160 3.454587 TTGGCGAGCAACGAGTGGT 62.455 57.895 7.46 0.00 45.77 4.16
160 161 2.664851 TTGGCGAGCAACGAGTGG 60.665 61.111 7.46 0.00 45.77 4.00
161 162 1.621301 CTCTTGGCGAGCAACGAGTG 61.621 60.000 7.46 0.00 45.77 3.51
162 163 1.373497 CTCTTGGCGAGCAACGAGT 60.373 57.895 7.46 0.00 45.77 4.18
163 164 1.347817 GACTCTTGGCGAGCAACGAG 61.348 60.000 4.64 4.64 43.85 4.18
164 165 1.372997 GACTCTTGGCGAGCAACGA 60.373 57.895 7.46 0.00 43.85 3.85
165 166 2.383527 GGACTCTTGGCGAGCAACG 61.384 63.158 0.00 0.00 43.85 4.10
166 167 0.674895 ATGGACTCTTGGCGAGCAAC 60.675 55.000 0.00 0.00 43.85 4.17
167 168 0.391661 GATGGACTCTTGGCGAGCAA 60.392 55.000 0.00 0.00 43.85 3.91
168 169 1.219124 GATGGACTCTTGGCGAGCA 59.781 57.895 0.00 0.00 43.85 4.26
169 170 0.107945 AAGATGGACTCTTGGCGAGC 60.108 55.000 0.00 0.00 42.76 5.03
176 177 0.539051 CTCGGCCAAGATGGACTCTT 59.461 55.000 2.24 0.00 45.79 2.85
177 178 1.333636 CCTCGGCCAAGATGGACTCT 61.334 60.000 2.24 0.00 45.79 3.24
178 179 1.144936 CCTCGGCCAAGATGGACTC 59.855 63.158 2.24 0.00 45.79 3.36
179 180 3.036429 GCCTCGGCCAAGATGGACT 62.036 63.158 2.24 0.00 45.79 3.85
180 181 2.514824 GCCTCGGCCAAGATGGAC 60.515 66.667 2.24 0.00 44.03 4.02
181 182 2.329539 GATGCCTCGGCCAAGATGGA 62.330 60.000 2.24 0.00 40.96 3.41
182 183 1.895707 GATGCCTCGGCCAAGATGG 60.896 63.158 2.24 0.00 41.55 3.51
183 184 1.153107 TGATGCCTCGGCCAAGATG 60.153 57.895 2.24 0.00 41.09 2.90
184 185 1.153086 GTGATGCCTCGGCCAAGAT 60.153 57.895 2.24 0.00 41.09 2.40
185 186 2.268920 GTGATGCCTCGGCCAAGA 59.731 61.111 2.24 0.00 41.09 3.02
186 187 2.046023 TGTGATGCCTCGGCCAAG 60.046 61.111 2.24 0.00 41.09 3.61
187 188 2.359850 GTGTGATGCCTCGGCCAA 60.360 61.111 2.24 0.00 41.09 4.52
188 189 4.408821 GGTGTGATGCCTCGGCCA 62.409 66.667 2.24 0.00 41.09 5.36
190 191 4.760047 ACGGTGTGATGCCTCGGC 62.760 66.667 0.00 0.00 42.35 5.54
191 192 2.509336 GACGGTGTGATGCCTCGG 60.509 66.667 0.00 0.00 0.00 4.63
192 193 2.880879 CGACGGTGTGATGCCTCG 60.881 66.667 0.00 0.00 0.00 4.63
193 194 3.188786 GCGACGGTGTGATGCCTC 61.189 66.667 0.00 0.00 0.00 4.70
194 195 4.760047 GGCGACGGTGTGATGCCT 62.760 66.667 0.00 0.00 42.44 4.75
213 214 4.704833 CCACGGACAGGCTGGTGG 62.705 72.222 21.69 21.69 43.41 4.61
214 215 4.704833 CCCACGGACAGGCTGGTG 62.705 72.222 20.34 16.35 0.00 4.17
221 222 4.379243 AAGCGAGCCCACGGACAG 62.379 66.667 0.00 0.00 0.00 3.51
222 223 4.373116 GAAGCGAGCCCACGGACA 62.373 66.667 0.00 0.00 0.00 4.02
236 237 2.507992 CGTCTGGAGGCAGCGAAG 60.508 66.667 0.00 0.00 0.00 3.79
237 238 4.069232 CCGTCTGGAGGCAGCGAA 62.069 66.667 0.00 0.00 37.49 4.70
244 245 4.394712 GGTGGTGCCGTCTGGAGG 62.395 72.222 0.00 0.00 37.49 4.30
263 264 3.530910 AAGTGGCGAGTTCGGGTGG 62.531 63.158 3.50 0.00 40.23 4.61
264 265 2.027625 GAAGTGGCGAGTTCGGGTG 61.028 63.158 0.17 0.00 40.23 4.61
265 266 2.342648 GAAGTGGCGAGTTCGGGT 59.657 61.111 0.17 0.00 40.23 5.28
266 267 2.027625 GTGAAGTGGCGAGTTCGGG 61.028 63.158 11.14 0.00 40.23 5.14
267 268 2.027625 GGTGAAGTGGCGAGTTCGG 61.028 63.158 11.14 0.00 40.23 4.30
268 269 2.372690 CGGTGAAGTGGCGAGTTCG 61.373 63.158 11.14 0.00 43.27 3.95
269 270 2.668280 GCGGTGAAGTGGCGAGTTC 61.668 63.158 9.19 9.19 32.76 3.01
270 271 2.665185 GCGGTGAAGTGGCGAGTT 60.665 61.111 0.00 0.00 0.00 3.01
271 272 3.616721 AGCGGTGAAGTGGCGAGT 61.617 61.111 0.00 0.00 0.00 4.18
272 273 3.114616 CAGCGGTGAAGTGGCGAG 61.115 66.667 9.50 0.00 0.00 5.03
276 277 3.052082 CTGGCAGCGGTGAAGTGG 61.052 66.667 20.69 0.00 0.00 4.00
277 278 3.730761 GCTGGCAGCGGTGAAGTG 61.731 66.667 25.47 5.91 0.00 3.16
873 874 3.547468 CGGTTAATGCAGCACTTATTTGC 59.453 43.478 0.00 0.00 43.34 3.68
886 887 2.096980 GTGTTAAGGGAGCGGTTAATGC 59.903 50.000 0.00 0.00 0.00 3.56
929 930 1.516110 CTGGAGTGGGATGGAGGAAT 58.484 55.000 0.00 0.00 0.00 3.01
933 934 0.549950 AATGCTGGAGTGGGATGGAG 59.450 55.000 0.00 0.00 0.00 3.86
934 935 0.256752 CAATGCTGGAGTGGGATGGA 59.743 55.000 0.00 0.00 0.00 3.41
935 936 0.033796 ACAATGCTGGAGTGGGATGG 60.034 55.000 1.04 0.00 0.00 3.51
936 937 1.100510 CACAATGCTGGAGTGGGATG 58.899 55.000 1.04 0.00 0.00 3.51
937 938 0.994247 TCACAATGCTGGAGTGGGAT 59.006 50.000 0.00 0.00 34.17 3.85
964 968 1.243902 TGATTCCGTGGTTGGCTTTC 58.756 50.000 0.00 0.00 0.00 2.62
973 977 0.674581 TGCTCTGCTTGATTCCGTGG 60.675 55.000 0.00 0.00 0.00 4.94
981 985 0.890683 TGACGAGATGCTCTGCTTGA 59.109 50.000 0.00 0.00 0.00 3.02
984 988 0.104487 CCATGACGAGATGCTCTGCT 59.896 55.000 0.00 0.00 0.00 4.24
1060 1229 0.467384 ATGATGAGGAAGGAGCCGTG 59.533 55.000 0.00 0.00 0.00 4.94
1278 1447 3.141083 AGAGGTAGAGCATGAGGTATCCA 59.859 47.826 0.00 0.00 0.00 3.41
1398 1567 1.007271 CTTGACGCAGGTGACGAGT 60.007 57.895 0.00 0.00 0.00 4.18
1506 1675 1.588082 GACGCCTCCACCGTAGAAA 59.412 57.895 0.00 0.00 39.30 2.52
1515 1684 3.986006 GTGTCACCGACGCCTCCA 61.986 66.667 0.00 0.00 37.12 3.86
1527 1696 0.530744 GTATGAGCGGTCTGGTGTCA 59.469 55.000 16.64 0.00 0.00 3.58
1536 1705 0.458543 CAACGAGCAGTATGAGCGGT 60.459 55.000 0.00 0.00 39.69 5.68
2100 2357 4.776322 ATGCTGCGCTGCGGGTAA 62.776 61.111 30.11 15.68 35.15 2.85
2289 2546 1.153901 CGACGCCACGTACAAGGAT 60.154 57.895 4.83 0.00 41.37 3.24
2293 2550 2.144833 ATCACCGACGCCACGTACAA 62.145 55.000 0.00 0.00 41.37 2.41
2658 2916 0.529119 CCTCCTTAAACCGCGCGTAT 60.529 55.000 29.95 14.09 0.00 3.06
2692 2950 2.040009 CTCTGTCCAACCACCACCGT 62.040 60.000 0.00 0.00 0.00 4.83
2702 2960 1.538047 GCCATTTCTGCTCTGTCCAA 58.462 50.000 0.00 0.00 0.00 3.53
2706 2964 1.016130 CGACGCCATTTCTGCTCTGT 61.016 55.000 0.00 0.00 0.00 3.41
2738 2996 2.224784 CCCTTTCACTTTTAACCGGTCG 59.775 50.000 8.04 0.00 0.00 4.79
2743 3001 4.500887 GCCAACTCCCTTTCACTTTTAACC 60.501 45.833 0.00 0.00 0.00 2.85
2748 3006 1.318576 CGCCAACTCCCTTTCACTTT 58.681 50.000 0.00 0.00 0.00 2.66
2765 3023 6.712241 TTTTATATCAGATGCTCTTAGCGC 57.288 37.500 0.00 0.00 46.26 5.92
2766 3024 8.929746 TGATTTTTATATCAGATGCTCTTAGCG 58.070 33.333 0.00 0.00 35.70 4.26
2779 3037 7.548780 GCAGTTTTTGGGCTGATTTTTATATCA 59.451 33.333 0.00 0.00 34.87 2.15
2780 3038 7.765819 AGCAGTTTTTGGGCTGATTTTTATATC 59.234 33.333 0.00 0.00 36.34 1.63
2781 3039 7.623630 AGCAGTTTTTGGGCTGATTTTTATAT 58.376 30.769 0.00 0.00 36.34 0.86
2782 3040 7.003402 AGCAGTTTTTGGGCTGATTTTTATA 57.997 32.000 0.00 0.00 36.34 0.98
2783 3041 5.868454 AGCAGTTTTTGGGCTGATTTTTAT 58.132 33.333 0.00 0.00 36.34 1.40
2784 3042 5.289083 AGCAGTTTTTGGGCTGATTTTTA 57.711 34.783 0.00 0.00 36.34 1.52
2785 3043 4.155063 AGCAGTTTTTGGGCTGATTTTT 57.845 36.364 0.00 0.00 36.34 1.94
2786 3044 3.843893 AGCAGTTTTTGGGCTGATTTT 57.156 38.095 0.00 0.00 36.34 1.82
2787 3045 3.134442 TCAAGCAGTTTTTGGGCTGATTT 59.866 39.130 0.00 0.00 39.00 2.17
2788 3046 2.699846 TCAAGCAGTTTTTGGGCTGATT 59.300 40.909 0.00 0.00 41.28 2.57
2789 3047 2.318908 TCAAGCAGTTTTTGGGCTGAT 58.681 42.857 0.00 0.00 38.04 2.90
2790 3048 1.774110 TCAAGCAGTTTTTGGGCTGA 58.226 45.000 0.00 0.00 38.04 4.26
2791 3049 2.409975 CATCAAGCAGTTTTTGGGCTG 58.590 47.619 0.00 0.00 38.04 4.85
2792 3050 1.270465 GCATCAAGCAGTTTTTGGGCT 60.270 47.619 0.00 0.00 44.79 5.19
2793 3051 1.150827 GCATCAAGCAGTTTTTGGGC 58.849 50.000 0.00 0.00 44.79 5.36
2808 3066 8.051909 CGTTTTTGCTGATGTATAATTTGCATC 58.948 33.333 0.00 9.88 44.93 3.91
2809 3067 7.010367 CCGTTTTTGCTGATGTATAATTTGCAT 59.990 33.333 0.00 0.00 32.81 3.96
2810 3068 6.309980 CCGTTTTTGCTGATGTATAATTTGCA 59.690 34.615 0.00 0.00 0.00 4.08
2811 3069 6.237808 CCCGTTTTTGCTGATGTATAATTTGC 60.238 38.462 0.00 0.00 0.00 3.68
2812 3070 7.032580 TCCCGTTTTTGCTGATGTATAATTTG 58.967 34.615 0.00 0.00 0.00 2.32
2813 3071 7.164230 TCCCGTTTTTGCTGATGTATAATTT 57.836 32.000 0.00 0.00 0.00 1.82
2814 3072 6.767524 TCCCGTTTTTGCTGATGTATAATT 57.232 33.333 0.00 0.00 0.00 1.40
2815 3073 6.959639 ATCCCGTTTTTGCTGATGTATAAT 57.040 33.333 0.00 0.00 0.00 1.28
2816 3074 6.767524 AATCCCGTTTTTGCTGATGTATAA 57.232 33.333 0.00 0.00 0.00 0.98
2817 3075 6.767524 AAATCCCGTTTTTGCTGATGTATA 57.232 33.333 0.00 0.00 0.00 1.47
2818 3076 5.659440 AAATCCCGTTTTTGCTGATGTAT 57.341 34.783 0.00 0.00 0.00 2.29
2819 3077 5.461032 AAAATCCCGTTTTTGCTGATGTA 57.539 34.783 0.00 0.00 36.65 2.29
2820 3078 4.335400 AAAATCCCGTTTTTGCTGATGT 57.665 36.364 0.00 0.00 36.65 3.06
2821 3079 5.694006 TGTAAAAATCCCGTTTTTGCTGATG 59.306 36.000 12.75 0.00 46.56 3.07
2822 3080 5.848406 TGTAAAAATCCCGTTTTTGCTGAT 58.152 33.333 12.75 0.00 46.56 2.90
2823 3081 5.263968 TGTAAAAATCCCGTTTTTGCTGA 57.736 34.783 12.75 0.00 46.56 4.26
2824 3082 5.694006 TGATGTAAAAATCCCGTTTTTGCTG 59.306 36.000 12.75 0.00 46.56 4.41
2825 3083 5.694458 GTGATGTAAAAATCCCGTTTTTGCT 59.306 36.000 12.75 2.59 46.56 3.91
2826 3084 5.107259 GGTGATGTAAAAATCCCGTTTTTGC 60.107 40.000 8.34 7.64 46.56 3.68
2827 3085 5.117897 CGGTGATGTAAAAATCCCGTTTTTG 59.882 40.000 8.34 0.00 46.56 2.44
2829 3087 4.519730 TCGGTGATGTAAAAATCCCGTTTT 59.480 37.500 11.31 0.00 41.69 2.43
2830 3088 4.073549 TCGGTGATGTAAAAATCCCGTTT 58.926 39.130 11.31 0.00 39.45 3.60
2831 3089 3.677190 TCGGTGATGTAAAAATCCCGTT 58.323 40.909 11.31 0.00 39.45 4.44
2832 3090 3.337694 TCGGTGATGTAAAAATCCCGT 57.662 42.857 11.31 0.00 39.45 5.28
2833 3091 4.155280 ACTTTCGGTGATGTAAAAATCCCG 59.845 41.667 0.00 0.00 39.63 5.14
2834 3092 5.638596 ACTTTCGGTGATGTAAAAATCCC 57.361 39.130 0.00 0.00 0.00 3.85
2848 3106 0.834612 TGGAGTTGGACACTTTCGGT 59.165 50.000 0.00 0.00 35.01 4.69
2849 3107 1.602377 GTTGGAGTTGGACACTTTCGG 59.398 52.381 0.00 0.00 35.01 4.30
2850 3108 2.285083 TGTTGGAGTTGGACACTTTCG 58.715 47.619 0.00 0.00 35.01 3.46
2851 3109 2.618709 CCTGTTGGAGTTGGACACTTTC 59.381 50.000 0.00 0.00 35.01 2.62
2852 3110 2.025321 ACCTGTTGGAGTTGGACACTTT 60.025 45.455 0.00 0.00 35.01 2.66
2853 3111 1.564348 ACCTGTTGGAGTTGGACACTT 59.436 47.619 0.00 0.00 35.01 3.16
2854 3112 1.213296 ACCTGTTGGAGTTGGACACT 58.787 50.000 0.00 0.00 39.07 3.55
2855 3113 2.922740 TACCTGTTGGAGTTGGACAC 57.077 50.000 0.00 0.00 37.04 3.67
2856 3114 3.137544 ACATTACCTGTTGGAGTTGGACA 59.862 43.478 0.00 0.00 32.90 4.02
2857 3115 3.502211 CACATTACCTGTTGGAGTTGGAC 59.498 47.826 0.00 0.00 35.29 4.02
2858 3116 3.137544 ACACATTACCTGTTGGAGTTGGA 59.862 43.478 0.00 0.00 35.29 3.53
2859 3117 3.486383 ACACATTACCTGTTGGAGTTGG 58.514 45.455 0.00 0.00 35.29 3.77
2860 3118 4.821805 AGAACACATTACCTGTTGGAGTTG 59.178 41.667 0.00 0.00 35.29 3.16
2861 3119 5.048846 AGAACACATTACCTGTTGGAGTT 57.951 39.130 0.00 0.00 35.29 3.01
2862 3120 4.706842 AGAACACATTACCTGTTGGAGT 57.293 40.909 0.00 0.00 35.29 3.85
2863 3121 6.037786 TCTAGAACACATTACCTGTTGGAG 57.962 41.667 0.00 0.00 35.29 3.86
2864 3122 6.620877 ATCTAGAACACATTACCTGTTGGA 57.379 37.500 0.00 0.00 35.29 3.53
2865 3123 7.106239 AGAATCTAGAACACATTACCTGTTGG 58.894 38.462 0.00 0.00 35.29 3.77
2866 3124 8.553459 AAGAATCTAGAACACATTACCTGTTG 57.447 34.615 0.00 0.00 35.29 3.33
2867 3125 9.220767 GAAAGAATCTAGAACACATTACCTGTT 57.779 33.333 0.00 0.00 35.29 3.16
2868 3126 8.598041 AGAAAGAATCTAGAACACATTACCTGT 58.402 33.333 0.00 0.00 36.32 4.00
2869 3127 9.442047 AAGAAAGAATCTAGAACACATTACCTG 57.558 33.333 0.00 0.00 37.42 4.00
2883 3141 9.939802 GGTGGTTAGTTAGAAAGAAAGAATCTA 57.060 33.333 0.00 0.00 37.42 1.98
2884 3142 7.883833 GGGTGGTTAGTTAGAAAGAAAGAATCT 59.116 37.037 0.00 0.00 41.32 2.40
2885 3143 7.120873 GGGGTGGTTAGTTAGAAAGAAAGAATC 59.879 40.741 0.00 0.00 0.00 2.52
2886 3144 6.946583 GGGGTGGTTAGTTAGAAAGAAAGAAT 59.053 38.462 0.00 0.00 0.00 2.40
2887 3145 6.301486 GGGGTGGTTAGTTAGAAAGAAAGAA 58.699 40.000 0.00 0.00 0.00 2.52
2888 3146 5.221986 GGGGGTGGTTAGTTAGAAAGAAAGA 60.222 44.000 0.00 0.00 0.00 2.52
2889 3147 5.008331 GGGGGTGGTTAGTTAGAAAGAAAG 58.992 45.833 0.00 0.00 0.00 2.62
2890 3148 4.666431 AGGGGGTGGTTAGTTAGAAAGAAA 59.334 41.667 0.00 0.00 0.00 2.52
2891 3149 4.042435 CAGGGGGTGGTTAGTTAGAAAGAA 59.958 45.833 0.00 0.00 0.00 2.52
2892 3150 3.585732 CAGGGGGTGGTTAGTTAGAAAGA 59.414 47.826 0.00 0.00 0.00 2.52
2893 3151 3.585732 TCAGGGGGTGGTTAGTTAGAAAG 59.414 47.826 0.00 0.00 0.00 2.62
2894 3152 3.600433 TCAGGGGGTGGTTAGTTAGAAA 58.400 45.455 0.00 0.00 0.00 2.52
2895 3153 3.278987 TCAGGGGGTGGTTAGTTAGAA 57.721 47.619 0.00 0.00 0.00 2.10
2896 3154 3.502051 ATCAGGGGGTGGTTAGTTAGA 57.498 47.619 0.00 0.00 0.00 2.10
2897 3155 4.586306 AAATCAGGGGGTGGTTAGTTAG 57.414 45.455 0.00 0.00 0.00 2.34
2898 3156 4.354387 TGAAAATCAGGGGGTGGTTAGTTA 59.646 41.667 0.00 0.00 0.00 2.24
2899 3157 3.141272 TGAAAATCAGGGGGTGGTTAGTT 59.859 43.478 0.00 0.00 0.00 2.24
2900 3158 2.719705 TGAAAATCAGGGGGTGGTTAGT 59.280 45.455 0.00 0.00 0.00 2.24
2901 3159 3.089284 GTGAAAATCAGGGGGTGGTTAG 58.911 50.000 0.00 0.00 0.00 2.34
2902 3160 2.553466 CGTGAAAATCAGGGGGTGGTTA 60.553 50.000 0.00 0.00 0.00 2.85
2903 3161 1.821666 CGTGAAAATCAGGGGGTGGTT 60.822 52.381 0.00 0.00 0.00 3.67
2904 3162 0.251165 CGTGAAAATCAGGGGGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
2905 3163 0.965363 CCGTGAAAATCAGGGGGTGG 60.965 60.000 10.48 0.00 45.83 4.61
2906 3164 2.566824 CCGTGAAAATCAGGGGGTG 58.433 57.895 10.48 0.00 45.83 4.61
2911 3169 1.453155 CCACTCCCGTGAAAATCAGG 58.547 55.000 0.00 0.00 43.97 3.86
2912 3170 1.453155 CCCACTCCCGTGAAAATCAG 58.547 55.000 0.00 0.00 43.97 2.90
2913 3171 0.608035 GCCCACTCCCGTGAAAATCA 60.608 55.000 0.00 0.00 43.97 2.57
2914 3172 1.313091 GGCCCACTCCCGTGAAAATC 61.313 60.000 0.00 0.00 43.97 2.17
2915 3173 1.304134 GGCCCACTCCCGTGAAAAT 60.304 57.895 0.00 0.00 43.97 1.82
2916 3174 2.114411 GGCCCACTCCCGTGAAAA 59.886 61.111 0.00 0.00 43.97 2.29
2917 3175 2.852075 AGGCCCACTCCCGTGAAA 60.852 61.111 0.00 0.00 43.97 2.69
2918 3176 3.319198 GAGGCCCACTCCCGTGAA 61.319 66.667 0.00 0.00 43.97 3.18
2925 3183 2.447714 GGGGATGAGAGGCCCACTC 61.448 68.421 17.42 17.42 46.57 3.51
2926 3184 2.367512 GGGGATGAGAGGCCCACT 60.368 66.667 0.00 0.00 46.57 4.00
2927 3185 0.694444 TAAGGGGATGAGAGGCCCAC 60.694 60.000 0.00 0.00 46.57 4.61
2928 3186 0.045623 TTAAGGGGATGAGAGGCCCA 59.954 55.000 0.00 0.00 46.57 5.36
2929 3187 1.352687 GATTAAGGGGATGAGAGGCCC 59.647 57.143 0.00 0.00 43.91 5.80
2930 3188 2.304470 GAGATTAAGGGGATGAGAGGCC 59.696 54.545 0.00 0.00 0.00 5.19
2931 3189 2.304470 GGAGATTAAGGGGATGAGAGGC 59.696 54.545 0.00 0.00 0.00 4.70
2932 3190 3.591789 TGGAGATTAAGGGGATGAGAGG 58.408 50.000 0.00 0.00 0.00 3.69
2933 3191 5.309020 TGATTGGAGATTAAGGGGATGAGAG 59.691 44.000 0.00 0.00 0.00 3.20
2934 3192 5.226803 TGATTGGAGATTAAGGGGATGAGA 58.773 41.667 0.00 0.00 0.00 3.27
2935 3193 5.573380 TGATTGGAGATTAAGGGGATGAG 57.427 43.478 0.00 0.00 0.00 2.90
2936 3194 5.992564 TTGATTGGAGATTAAGGGGATGA 57.007 39.130 0.00 0.00 0.00 2.92
2937 3195 7.607615 ATTTTGATTGGAGATTAAGGGGATG 57.392 36.000 0.00 0.00 0.00 3.51
2938 3196 8.628368 AAATTTTGATTGGAGATTAAGGGGAT 57.372 30.769 0.00 0.00 0.00 3.85
2939 3197 8.977412 GTAAATTTTGATTGGAGATTAAGGGGA 58.023 33.333 0.00 0.00 0.00 4.81
2940 3198 8.204160 GGTAAATTTTGATTGGAGATTAAGGGG 58.796 37.037 0.00 0.00 0.00 4.79
2941 3199 8.981659 AGGTAAATTTTGATTGGAGATTAAGGG 58.018 33.333 0.00 0.00 0.00 3.95
2955 3213 9.413048 CGGCTTTTACAAATAGGTAAATTTTGA 57.587 29.630 0.00 0.00 41.42 2.69
2956 3214 9.198837 ACGGCTTTTACAAATAGGTAAATTTTG 57.801 29.630 0.00 0.00 41.42 2.44
2957 3215 9.198837 CACGGCTTTTACAAATAGGTAAATTTT 57.801 29.630 0.00 0.00 41.42 1.82
2958 3216 8.361889 ACACGGCTTTTACAAATAGGTAAATTT 58.638 29.630 0.00 0.00 41.42 1.82
2959 3217 7.888424 ACACGGCTTTTACAAATAGGTAAATT 58.112 30.769 0.00 0.00 41.42 1.82
2960 3218 7.457024 ACACGGCTTTTACAAATAGGTAAAT 57.543 32.000 0.00 0.00 41.42 1.40
2961 3219 6.880942 ACACGGCTTTTACAAATAGGTAAA 57.119 33.333 0.00 0.00 40.45 2.01
2962 3220 7.976135 TTACACGGCTTTTACAAATAGGTAA 57.024 32.000 0.00 0.00 0.00 2.85
2963 3221 7.094848 GGTTTACACGGCTTTTACAAATAGGTA 60.095 37.037 0.00 0.00 0.00 3.08
2964 3222 6.294120 GGTTTACACGGCTTTTACAAATAGGT 60.294 38.462 0.00 0.00 0.00 3.08
2965 3223 6.072342 AGGTTTACACGGCTTTTACAAATAGG 60.072 38.462 0.00 0.00 0.00 2.57
2966 3224 6.905578 AGGTTTACACGGCTTTTACAAATAG 58.094 36.000 0.00 0.00 0.00 1.73
2967 3225 6.880942 AGGTTTACACGGCTTTTACAAATA 57.119 33.333 0.00 0.00 0.00 1.40
2968 3226 5.777850 AGGTTTACACGGCTTTTACAAAT 57.222 34.783 0.00 0.00 0.00 2.32
2969 3227 6.262720 ACATAGGTTTACACGGCTTTTACAAA 59.737 34.615 0.00 0.00 0.00 2.83
2970 3228 5.764192 ACATAGGTTTACACGGCTTTTACAA 59.236 36.000 0.00 0.00 0.00 2.41
2971 3229 5.307204 ACATAGGTTTACACGGCTTTTACA 58.693 37.500 0.00 0.00 0.00 2.41
2972 3230 5.868043 ACATAGGTTTACACGGCTTTTAC 57.132 39.130 0.00 0.00 0.00 2.01
2973 3231 7.064847 CACATACATAGGTTTACACGGCTTTTA 59.935 37.037 0.00 0.00 0.00 1.52
2974 3232 5.941647 ACATACATAGGTTTACACGGCTTTT 59.058 36.000 0.00 0.00 0.00 2.27
2975 3233 5.353123 CACATACATAGGTTTACACGGCTTT 59.647 40.000 0.00 0.00 0.00 3.51
2976 3234 4.873827 CACATACATAGGTTTACACGGCTT 59.126 41.667 0.00 0.00 0.00 4.35
2977 3235 4.081309 ACACATACATAGGTTTACACGGCT 60.081 41.667 0.00 0.00 0.00 5.52
2978 3236 4.186159 ACACATACATAGGTTTACACGGC 58.814 43.478 0.00 0.00 0.00 5.68
2979 3237 5.461078 GCTACACATACATAGGTTTACACGG 59.539 44.000 0.00 0.00 0.00 4.94
2980 3238 6.037726 TGCTACACATACATAGGTTTACACG 58.962 40.000 0.00 0.00 0.00 4.49
2981 3239 8.433421 AATGCTACACATACATAGGTTTACAC 57.567 34.615 0.00 0.00 38.34 2.90
2982 3240 9.537192 GTAATGCTACACATACATAGGTTTACA 57.463 33.333 0.00 0.00 38.34 2.41
2983 3241 9.760077 AGTAATGCTACACATACATAGGTTTAC 57.240 33.333 0.00 0.00 38.34 2.01
2984 3242 9.758651 CAGTAATGCTACACATACATAGGTTTA 57.241 33.333 0.00 0.00 38.34 2.01
2985 3243 8.482943 TCAGTAATGCTACACATACATAGGTTT 58.517 33.333 0.00 0.00 38.34 3.27
2986 3244 8.018537 TCAGTAATGCTACACATACATAGGTT 57.981 34.615 0.00 0.00 38.34 3.50
2987 3245 7.597288 TCAGTAATGCTACACATACATAGGT 57.403 36.000 0.00 0.00 38.34 3.08
2988 3246 8.887036 TTTCAGTAATGCTACACATACATAGG 57.113 34.615 0.00 0.00 38.34 2.57
2989 3247 8.982685 CCTTTCAGTAATGCTACACATACATAG 58.017 37.037 0.00 0.00 38.34 2.23
2990 3248 8.700973 TCCTTTCAGTAATGCTACACATACATA 58.299 33.333 0.00 0.00 38.34 2.29
2991 3249 7.564793 TCCTTTCAGTAATGCTACACATACAT 58.435 34.615 0.00 0.00 38.34 2.29
2992 3250 6.941857 TCCTTTCAGTAATGCTACACATACA 58.058 36.000 0.00 0.00 38.34 2.29
2993 3251 7.096023 CGATCCTTTCAGTAATGCTACACATAC 60.096 40.741 0.00 0.00 38.34 2.39
2994 3252 6.923508 CGATCCTTTCAGTAATGCTACACATA 59.076 38.462 0.00 0.00 38.34 2.29
2995 3253 5.755375 CGATCCTTTCAGTAATGCTACACAT 59.245 40.000 0.00 0.00 42.30 3.21
2996 3254 5.105513 TCGATCCTTTCAGTAATGCTACACA 60.106 40.000 0.00 0.00 0.00 3.72
2997 3255 5.348986 TCGATCCTTTCAGTAATGCTACAC 58.651 41.667 0.00 0.00 0.00 2.90
2998 3256 5.592104 TCGATCCTTTCAGTAATGCTACA 57.408 39.130 0.00 0.00 0.00 2.74
2999 3257 9.509855 CTATATCGATCCTTTCAGTAATGCTAC 57.490 37.037 0.00 0.00 0.00 3.58
3000 3258 9.244292 ACTATATCGATCCTTTCAGTAATGCTA 57.756 33.333 0.00 0.00 0.00 3.49
3001 3259 8.128322 ACTATATCGATCCTTTCAGTAATGCT 57.872 34.615 0.00 0.00 0.00 3.79
3002 3260 8.651588 CAACTATATCGATCCTTTCAGTAATGC 58.348 37.037 0.00 0.00 0.00 3.56
3003 3261 9.914131 TCAACTATATCGATCCTTTCAGTAATG 57.086 33.333 0.00 0.00 0.00 1.90
3004 3262 9.915629 GTCAACTATATCGATCCTTTCAGTAAT 57.084 33.333 0.00 0.00 0.00 1.89
3005 3263 9.132923 AGTCAACTATATCGATCCTTTCAGTAA 57.867 33.333 0.00 0.00 0.00 2.24
3006 3264 8.693120 AGTCAACTATATCGATCCTTTCAGTA 57.307 34.615 0.00 0.00 0.00 2.74
3007 3265 7.589958 AGTCAACTATATCGATCCTTTCAGT 57.410 36.000 0.00 0.00 0.00 3.41
3008 3266 9.004717 TCTAGTCAACTATATCGATCCTTTCAG 57.995 37.037 0.00 0.00 0.00 3.02
3042 3305 8.802267 AGCTAAAAATTGTTAGTTGCCTATTCA 58.198 29.630 15.37 0.00 34.20 2.57
3455 3720 0.253610 TTTGTGGTGTCGTTGGGAGT 59.746 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.