Multiple sequence alignment - TraesCS1D01G090900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G090900 chr1D 100.000 3891 0 0 1 3891 77361276 77365166 0.000000e+00 7186
1 TraesCS1D01G090900 chr1D 93.082 159 11 0 618 776 132857831 132857673 2.340000e-57 233
2 TraesCS1D01G090900 chr1D 92.121 165 12 1 618 782 30100583 30100420 8.410000e-57 231
3 TraesCS1D01G090900 chr1A 94.699 2471 103 19 861 3326 108689196 108691643 0.000000e+00 3812
4 TraesCS1D01G090900 chr1A 90.800 500 40 5 1 497 108687391 108687887 0.000000e+00 664
5 TraesCS1D01G090900 chr1A 90.816 490 23 8 3384 3871 108692309 108692778 1.520000e-178 636
6 TraesCS1D01G090900 chr1A 92.308 91 5 1 776 864 108687961 108688051 1.130000e-25 128
7 TraesCS1D01G090900 chr1B 93.159 1608 81 14 777 2370 120880383 120881975 0.000000e+00 2333
8 TraesCS1D01G090900 chr1B 86.649 1498 105 45 2403 3871 120882521 120883952 0.000000e+00 1570
9 TraesCS1D01G090900 chr1B 90.409 636 46 9 1 624 120879758 120880390 0.000000e+00 822
10 TraesCS1D01G090900 chr2A 92.771 166 12 0 618 783 78849782 78849617 1.400000e-59 241
11 TraesCS1D01G090900 chr5D 93.671 158 10 0 615 772 398108623 398108780 1.810000e-58 237
12 TraesCS1D01G090900 chr3D 93.125 160 11 0 617 776 449740281 449740440 6.500000e-58 235
13 TraesCS1D01G090900 chr5A 92.593 162 12 0 615 776 605231140 605231301 2.340000e-57 233
14 TraesCS1D01G090900 chr5A 91.515 165 14 0 615 779 320214408 320214244 1.090000e-55 228
15 TraesCS1D01G090900 chr3B 92.593 162 11 1 618 779 529407950 529407790 8.410000e-57 231
16 TraesCS1D01G090900 chr4D 92.453 159 12 0 618 776 326382448 326382606 1.090000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G090900 chr1D 77361276 77365166 3890 False 7186 7186 100.000000 1 3891 1 chr1D.!!$F1 3890
1 TraesCS1D01G090900 chr1A 108687391 108692778 5387 False 1310 3812 92.155750 1 3871 4 chr1A.!!$F1 3870
2 TraesCS1D01G090900 chr1B 120879758 120883952 4194 False 1575 2333 90.072333 1 3871 3 chr1B.!!$F1 3870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 216 0.036388 TTAGGAAGTTGCAGGCGAGG 60.036 55.000 0.0 0.0 0.0 4.63 F
224 228 1.081175 GGCGAGGTTGCTTGCTTTC 60.081 57.895 0.0 0.0 34.3 2.62 F
1017 2180 0.601558 CAATGGCTTCAACTGCTGCT 59.398 50.000 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1017 2180 0.321387 TTGTATTTGCGGCCGGTACA 60.321 50.000 29.38 14.20 0.00 2.90 R
1803 2969 1.000019 ACCATCTGCTGCATGCCTT 60.000 52.632 16.68 0.00 42.00 4.35 R
3016 4705 0.460284 GTCTGTCCATAGTGGCACCG 60.460 60.000 15.27 2.97 37.47 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 1.207377 GACGGCTCGATTTAGGTCGC 61.207 60.000 1.50 0.00 41.22 5.19
124 126 5.567430 AGCTTATTTCCGAAAGTTTAGGGT 58.433 37.500 14.02 4.67 0.00 4.34
134 136 6.604396 TCCGAAAGTTTAGGGTTTTTCTCTTT 59.396 34.615 14.02 0.00 0.00 2.52
153 155 7.010160 TCTCTTTTTCCCTGGTGATGTAATTT 58.990 34.615 0.00 0.00 0.00 1.82
179 181 3.169512 ACTTGGGGAATTAGGGTTGTG 57.830 47.619 0.00 0.00 0.00 3.33
205 209 1.141254 TGGAACCGTTAGGAAGTTGCA 59.859 47.619 0.00 0.00 39.16 4.08
207 211 1.804748 GAACCGTTAGGAAGTTGCAGG 59.195 52.381 0.00 0.00 41.02 4.85
212 216 0.036388 TTAGGAAGTTGCAGGCGAGG 60.036 55.000 0.00 0.00 0.00 4.63
224 228 1.081175 GGCGAGGTTGCTTGCTTTC 60.081 57.895 0.00 0.00 34.30 2.62
230 234 2.292292 GAGGTTGCTTGCTTTCGGTTAA 59.708 45.455 0.00 0.00 0.00 2.01
231 235 2.293399 AGGTTGCTTGCTTTCGGTTAAG 59.707 45.455 0.00 0.00 0.00 1.85
236 240 3.042887 GCTTGCTTTCGGTTAAGTGTTG 58.957 45.455 0.00 0.00 0.00 3.33
241 245 4.033019 GCTTTCGGTTAAGTGTTGTTGTC 58.967 43.478 0.00 0.00 0.00 3.18
248 252 5.622687 CGGTTAAGTGTTGTTGTCCCTTTTT 60.623 40.000 0.00 0.00 0.00 1.94
299 303 2.811431 TGCTTCGAAATGTTGTGTAGGG 59.189 45.455 0.00 0.00 0.00 3.53
329 334 6.828785 ACAGTTTACTCCTGTCTTCACATTTT 59.171 34.615 0.00 0.00 38.81 1.82
333 338 7.962964 TTACTCCTGTCTTCACATTTTACTG 57.037 36.000 0.00 0.00 0.00 2.74
473 483 7.588497 ATTCTTTTCCTACTTATGATTGGCC 57.412 36.000 0.00 0.00 0.00 5.36
505 515 5.550290 CCCAACTTTAATTGCTGGATTTGT 58.450 37.500 0.00 0.00 0.00 2.83
578 591 6.004574 TGCATGTGTATACCACCTTTTGTTA 58.995 36.000 0.00 0.00 43.85 2.41
619 632 8.519526 AGACACTTAGCTGCAGATAGATTATAC 58.480 37.037 20.43 5.37 0.00 1.47
620 633 8.415950 ACACTTAGCTGCAGATAGATTATACT 57.584 34.615 20.43 2.97 0.00 2.12
621 634 8.519526 ACACTTAGCTGCAGATAGATTATACTC 58.480 37.037 20.43 0.00 0.00 2.59
622 635 7.973388 CACTTAGCTGCAGATAGATTATACTCC 59.027 40.741 20.43 0.00 0.00 3.85
623 636 5.930837 AGCTGCAGATAGATTATACTCCC 57.069 43.478 20.43 0.00 0.00 4.30
624 637 5.588845 AGCTGCAGATAGATTATACTCCCT 58.411 41.667 20.43 0.00 0.00 4.20
625 638 5.656416 AGCTGCAGATAGATTATACTCCCTC 59.344 44.000 20.43 0.00 0.00 4.30
626 639 5.163457 GCTGCAGATAGATTATACTCCCTCC 60.163 48.000 20.43 0.00 0.00 4.30
627 640 5.903923 TGCAGATAGATTATACTCCCTCCA 58.096 41.667 0.00 0.00 0.00 3.86
628 641 6.506661 TGCAGATAGATTATACTCCCTCCAT 58.493 40.000 0.00 0.00 0.00 3.41
629 642 6.962311 TGCAGATAGATTATACTCCCTCCATT 59.038 38.462 0.00 0.00 0.00 3.16
630 643 7.124901 TGCAGATAGATTATACTCCCTCCATTC 59.875 40.741 0.00 0.00 0.00 2.67
631 644 7.418483 GCAGATAGATTATACTCCCTCCATTCC 60.418 44.444 0.00 0.00 0.00 3.01
632 645 7.843760 CAGATAGATTATACTCCCTCCATTCCT 59.156 40.741 0.00 0.00 0.00 3.36
633 646 9.086059 AGATAGATTATACTCCCTCCATTCCTA 57.914 37.037 0.00 0.00 0.00 2.94
634 647 9.716556 GATAGATTATACTCCCTCCATTCCTAA 57.283 37.037 0.00 0.00 0.00 2.69
636 649 8.997301 AGATTATACTCCCTCCATTCCTAAAT 57.003 34.615 0.00 0.00 0.00 1.40
642 655 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
643 656 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
644 657 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
645 658 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
646 659 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
647 660 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
666 679 8.907885 AGTCTTTTTAGAGATTTGAATATGGGC 58.092 33.333 0.00 0.00 0.00 5.36
667 680 8.907885 GTCTTTTTAGAGATTTGAATATGGGCT 58.092 33.333 0.00 0.00 0.00 5.19
670 683 9.693739 TTTTTAGAGATTTGAATATGGGCTACA 57.306 29.630 0.00 0.00 0.00 2.74
671 684 9.866655 TTTTAGAGATTTGAATATGGGCTACAT 57.133 29.630 0.46 0.46 43.68 2.29
673 686 9.944376 TTAGAGATTTGAATATGGGCTACATAC 57.056 33.333 4.22 0.00 44.41 2.39
674 687 7.977818 AGAGATTTGAATATGGGCTACATACA 58.022 34.615 4.22 0.00 44.41 2.29
675 688 8.099537 AGAGATTTGAATATGGGCTACATACAG 58.900 37.037 4.22 0.00 44.41 2.74
676 689 7.977818 AGATTTGAATATGGGCTACATACAGA 58.022 34.615 4.22 0.00 44.41 3.41
677 690 8.609483 AGATTTGAATATGGGCTACATACAGAT 58.391 33.333 4.22 1.53 44.41 2.90
678 691 7.984422 TTTGAATATGGGCTACATACAGATG 57.016 36.000 4.22 0.00 44.41 2.90
679 692 6.933514 TGAATATGGGCTACATACAGATGA 57.066 37.500 4.22 0.00 44.41 2.92
680 693 7.315066 TGAATATGGGCTACATACAGATGAA 57.685 36.000 4.22 0.00 44.41 2.57
681 694 7.921304 TGAATATGGGCTACATACAGATGAAT 58.079 34.615 4.22 0.00 44.41 2.57
682 695 9.045745 TGAATATGGGCTACATACAGATGAATA 57.954 33.333 4.22 0.00 44.41 1.75
686 699 8.844865 ATGGGCTACATACAGATGAATATAGA 57.155 34.615 0.00 0.00 38.26 1.98
687 700 8.067751 TGGGCTACATACAGATGAATATAGAC 57.932 38.462 0.00 0.00 36.48 2.59
688 701 7.148069 TGGGCTACATACAGATGAATATAGACG 60.148 40.741 0.00 0.00 36.48 4.18
689 702 7.148052 GGGCTACATACAGATGAATATAGACGT 60.148 40.741 0.00 0.00 36.48 4.34
690 703 8.890718 GGCTACATACAGATGAATATAGACGTA 58.109 37.037 0.00 0.00 36.48 3.57
708 721 9.999660 ATAGACGTATTCTAGAGTGTAGATTCA 57.000 33.333 0.00 0.00 40.33 2.57
709 722 8.145316 AGACGTATTCTAGAGTGTAGATTCAC 57.855 38.462 0.00 0.00 34.01 3.18
710 723 7.988599 AGACGTATTCTAGAGTGTAGATTCACT 59.011 37.037 0.00 0.00 41.09 3.41
720 733 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
721 734 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
722 735 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
723 736 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
724 737 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
725 738 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
726 739 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
727 740 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
728 741 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
729 742 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
730 743 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
731 744 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
732 745 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
733 746 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
734 747 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
735 748 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
736 749 8.432013 TCATTTTGCTCTGTATGTAGTCCATAT 58.568 33.333 0.00 0.00 38.29 1.78
737 750 9.060347 CATTTTGCTCTGTATGTAGTCCATATT 57.940 33.333 0.00 0.00 38.29 1.28
739 752 9.764363 TTTTGCTCTGTATGTAGTCCATATTAG 57.236 33.333 0.00 0.00 38.29 1.73
740 753 8.706322 TTGCTCTGTATGTAGTCCATATTAGA 57.294 34.615 0.00 0.00 38.29 2.10
741 754 8.706322 TGCTCTGTATGTAGTCCATATTAGAA 57.294 34.615 0.00 0.00 38.29 2.10
742 755 9.314133 TGCTCTGTATGTAGTCCATATTAGAAT 57.686 33.333 0.00 0.00 38.29 2.40
806 819 6.543465 TCCATTGTCCTGCACAGATAAATTAG 59.457 38.462 0.00 0.00 35.97 1.73
873 2036 4.769688 TGGCTGTATCCTTCATGTTACTG 58.230 43.478 0.00 0.00 0.00 2.74
966 2129 8.929827 TGCATCATTATTTCCAGTTTGTAATG 57.070 30.769 0.00 0.00 35.26 1.90
1017 2180 0.601558 CAATGGCTTCAACTGCTGCT 59.398 50.000 0.00 0.00 0.00 4.24
1239 2405 8.172484 TCAGTTATCGACAAACCAAAATATTCG 58.828 33.333 8.46 0.00 0.00 3.34
1317 2483 8.608844 AGAGAAGTACCACTAAACATGAAAAG 57.391 34.615 0.00 0.00 0.00 2.27
1412 2578 1.756538 GGTGTTATGGGGATGGCAAAG 59.243 52.381 0.00 0.00 0.00 2.77
1500 2666 1.214673 ACGACTAGGATGCTCCAGGTA 59.785 52.381 0.00 0.00 39.61 3.08
1537 2703 5.982890 AGATAAGAAGCTAGGAGATGAGC 57.017 43.478 0.00 0.00 39.08 4.26
1603 2769 4.348168 AGGGCAAGAAGTTAGAGACAAAGA 59.652 41.667 0.00 0.00 0.00 2.52
1605 2771 6.213600 AGGGCAAGAAGTTAGAGACAAAGATA 59.786 38.462 0.00 0.00 0.00 1.98
1608 2774 8.951243 GGCAAGAAGTTAGAGACAAAGATAAAT 58.049 33.333 0.00 0.00 0.00 1.40
1625 2791 6.435164 AGATAAATACATTGGAAGGCAAGGT 58.565 36.000 0.00 0.00 0.00 3.50
1638 2804 6.064717 GGAAGGCAAGGTTGACATATTAGAT 58.935 40.000 0.00 0.00 39.18 1.98
1672 2838 5.551233 CTGAACTGAGAGACATGGGTTTTA 58.449 41.667 0.00 0.00 0.00 1.52
1677 2843 5.723887 ACTGAGAGACATGGGTTTTATCTCT 59.276 40.000 8.94 8.94 46.85 3.10
1706 2872 7.536895 AAGAATTCAATGAGATTCTGACTCG 57.463 36.000 15.87 0.00 37.22 4.18
1740 2906 2.649129 GGGTTTGGATGGCACTGGC 61.649 63.158 0.00 0.00 40.13 4.85
1764 2930 6.363626 GCAGTGATATAACCTTAGACGATGTG 59.636 42.308 0.00 0.00 0.00 3.21
1768 2934 8.018520 GTGATATAACCTTAGACGATGTGAGAG 58.981 40.741 0.00 0.00 0.00 3.20
1803 2969 5.015072 AGAGATAGTGGAGATGGAGATAGCA 59.985 44.000 0.00 0.00 0.00 3.49
1827 2993 0.395311 ATGCAGCAGATGGTCTTGGG 60.395 55.000 0.00 0.00 0.00 4.12
2006 3172 3.896888 AGTGCTGGATTTGTGGAAATCAA 59.103 39.130 9.18 0.00 46.52 2.57
2055 3221 2.942376 AGTCACTCTAGAGCATGTCGAG 59.058 50.000 19.97 0.45 0.00 4.04
2064 3230 3.027412 AGAGCATGTCGAGAAGGTATGT 58.973 45.455 0.00 0.00 0.00 2.29
2070 3236 5.403766 GCATGTCGAGAAGGTATGTCTATTG 59.596 44.000 0.00 0.00 0.00 1.90
2071 3237 5.515797 TGTCGAGAAGGTATGTCTATTGG 57.484 43.478 0.00 0.00 0.00 3.16
2138 3304 3.327757 GGCATATCTCTGTCCAACCCATA 59.672 47.826 0.00 0.00 0.00 2.74
2157 3323 7.806180 ACCCATACTGTAGCTCATTATTTTCT 58.194 34.615 0.00 0.00 0.00 2.52
2158 3324 7.716998 ACCCATACTGTAGCTCATTATTTTCTG 59.283 37.037 0.00 0.00 0.00 3.02
2203 3370 8.806177 TTTGTCAACATTTCTGATTTGAGATG 57.194 30.769 0.00 0.00 35.48 2.90
2417 4103 5.362263 AGCAAAGCATGTTCTTCATTTTGT 58.638 33.333 0.00 0.00 36.96 2.83
2463 4149 5.123027 GGTTCTTCCATTTTGTTTGTTTGCA 59.877 36.000 0.00 0.00 35.97 4.08
2539 4226 4.834496 TCCCATGAATCACTTTTCTGCTTT 59.166 37.500 0.00 0.00 0.00 3.51
2540 4227 4.927425 CCCATGAATCACTTTTCTGCTTTG 59.073 41.667 0.00 0.00 0.00 2.77
2569 4256 5.828747 TCCAGTGTACTATCTTATGCGAAC 58.171 41.667 0.00 0.00 0.00 3.95
2674 4361 2.094494 AGACGACGATTCAGACAAGCAT 60.094 45.455 0.00 0.00 0.00 3.79
2680 4367 2.621338 GATTCAGACAAGCATCCACGA 58.379 47.619 0.00 0.00 0.00 4.35
2785 4472 0.882927 CGTCGGTGGTCAACATGGTT 60.883 55.000 0.00 0.00 0.00 3.67
2812 4499 0.538977 ACTTCTCCTCGAACCACGGA 60.539 55.000 0.00 0.00 42.82 4.69
2916 4604 4.360563 CTGCCTGATGTAAGTTAGTACCG 58.639 47.826 0.00 0.00 0.00 4.02
2935 4623 1.682849 GTGTGCCTGGGACCATACA 59.317 57.895 16.15 0.00 0.00 2.29
3065 4754 4.810191 ACTGTTCTTGTTCCTAGCTAGG 57.190 45.455 30.94 30.94 45.02 3.02
3118 4809 2.680221 GCTCTCTGTACTCTACCGTGGA 60.680 54.545 0.00 0.00 0.00 4.02
3166 4857 1.166531 GGGTGTGAACTGGTGTGCTC 61.167 60.000 0.00 0.00 0.00 4.26
3215 4907 3.004106 GCTGTGAGCTTGCCCTATATTTG 59.996 47.826 0.00 0.00 38.45 2.32
3220 4912 4.402155 TGAGCTTGCCCTATATTTGGTTTG 59.598 41.667 0.00 0.00 0.00 2.93
3230 4922 7.201705 GCCCTATATTTGGTTTGTCTCAACTAC 60.202 40.741 0.00 0.00 0.00 2.73
3237 4929 9.787435 ATTTGGTTTGTCTCAACTACTATGTAA 57.213 29.630 0.00 0.00 0.00 2.41
3257 4949 2.595124 ATGACGTGCACCGATTATCA 57.405 45.000 12.15 6.18 40.70 2.15
3286 4978 2.130272 ACTGTCCTAGTCGCATCTCA 57.870 50.000 0.00 0.00 33.17 3.27
3363 5625 7.201785 CGCAAGGGGAGTTTACAAATATATTGT 60.202 37.037 0.00 2.75 36.49 2.71
3386 5648 9.679661 TTGTTAAATGCTGAGATAGGAAATACA 57.320 29.630 0.00 0.00 0.00 2.29
3387 5649 9.679661 TGTTAAATGCTGAGATAGGAAATACAA 57.320 29.630 0.00 0.00 0.00 2.41
3388 5650 9.937175 GTTAAATGCTGAGATAGGAAATACAAC 57.063 33.333 0.00 0.00 0.00 3.32
3420 5720 9.695526 CAATTTCTTGGATGTTAGATTTTGACA 57.304 29.630 0.00 0.00 0.00 3.58
3428 5728 7.094975 TGGATGTTAGATTTTGACAAGGTTACG 60.095 37.037 0.00 0.00 0.00 3.18
3517 5817 9.784680 TCTTTATTTCGTTATCTCTGTGTACTC 57.215 33.333 0.00 0.00 0.00 2.59
3518 5818 9.790389 CTTTATTTCGTTATCTCTGTGTACTCT 57.210 33.333 0.00 0.00 0.00 3.24
3526 5826 7.063662 CGTTATCTCTGTGTACTCTATATCGCT 59.936 40.741 0.00 0.00 0.00 4.93
3527 5827 9.368674 GTTATCTCTGTGTACTCTATATCGCTA 57.631 37.037 0.00 0.00 0.00 4.26
3529 5829 7.835634 TCTCTGTGTACTCTATATCGCTATG 57.164 40.000 0.00 0.00 0.00 2.23
3530 5830 7.387643 TCTCTGTGTACTCTATATCGCTATGT 58.612 38.462 0.00 0.00 0.00 2.29
3531 5831 8.529476 TCTCTGTGTACTCTATATCGCTATGTA 58.471 37.037 0.00 0.00 0.00 2.29
3551 5851 6.295039 TGTAAAGGACGTTGATTCTCAAAC 57.705 37.500 0.00 0.00 38.22 2.93
3580 5880 1.400494 AGTTTGACACGTTCTGCAACC 59.600 47.619 0.00 0.00 0.00 3.77
3643 5960 3.406764 AGTGCAGATCTTTCAGGTTGTC 58.593 45.455 0.00 0.00 0.00 3.18
3762 6079 3.309388 CACACTAGAACCACGACAAGAG 58.691 50.000 0.00 0.00 0.00 2.85
3868 6185 8.637099 TGTTTGAAACAATATGGAACATCTTCA 58.363 29.630 8.51 0.00 40.57 3.02
3876 6193 3.855255 TGGAACATCTTCACACCAAGA 57.145 42.857 0.00 0.00 36.82 3.02
3877 6194 4.163441 TGGAACATCTTCACACCAAGAA 57.837 40.909 0.00 0.00 35.99 2.52
3878 6195 4.531854 TGGAACATCTTCACACCAAGAAA 58.468 39.130 0.00 0.00 35.99 2.52
3879 6196 5.139727 TGGAACATCTTCACACCAAGAAAT 58.860 37.500 0.00 0.00 35.99 2.17
3880 6197 5.241506 TGGAACATCTTCACACCAAGAAATC 59.758 40.000 0.00 0.00 35.99 2.17
3881 6198 5.241506 GGAACATCTTCACACCAAGAAATCA 59.758 40.000 0.00 0.00 35.99 2.57
3882 6199 5.695851 ACATCTTCACACCAAGAAATCAC 57.304 39.130 0.00 0.00 35.99 3.06
3883 6200 5.132502 ACATCTTCACACCAAGAAATCACA 58.867 37.500 0.00 0.00 35.99 3.58
3884 6201 5.771666 ACATCTTCACACCAAGAAATCACAT 59.228 36.000 0.00 0.00 35.99 3.21
3885 6202 6.266103 ACATCTTCACACCAAGAAATCACATT 59.734 34.615 0.00 0.00 35.99 2.71
3886 6203 6.713762 TCTTCACACCAAGAAATCACATTT 57.286 33.333 0.00 0.00 34.64 2.32
3887 6204 6.506147 TCTTCACACCAAGAAATCACATTTG 58.494 36.000 0.00 0.00 31.47 2.32
3888 6205 6.320926 TCTTCACACCAAGAAATCACATTTGA 59.679 34.615 0.00 0.00 30.46 2.69
3889 6206 6.462552 TCACACCAAGAAATCACATTTGAA 57.537 33.333 0.00 0.00 34.61 2.69
3890 6207 6.272318 TCACACCAAGAAATCACATTTGAAC 58.728 36.000 0.00 0.00 34.61 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 2.170187 CAGACAGAATGAAGAGGGGGAG 59.830 54.545 0.00 0.00 39.69 4.30
124 126 5.660864 ACATCACCAGGGAAAAAGAGAAAAA 59.339 36.000 0.00 0.00 0.00 1.94
134 136 6.310941 TCAAGAAATTACATCACCAGGGAAA 58.689 36.000 0.00 0.00 0.00 3.13
153 155 3.660669 ACCCTAATTCCCCAAGTTCAAGA 59.339 43.478 0.00 0.00 0.00 3.02
179 181 4.572909 ACTTCCTAACGGTTCCATACAAC 58.427 43.478 0.00 0.00 0.00 3.32
205 209 1.518903 GAAAGCAAGCAACCTCGCCT 61.519 55.000 0.00 0.00 0.00 5.52
207 211 1.441016 CGAAAGCAAGCAACCTCGC 60.441 57.895 0.00 0.00 0.00 5.03
212 216 3.042887 CACTTAACCGAAAGCAAGCAAC 58.957 45.455 0.00 0.00 0.00 4.17
220 224 4.496840 GGGACAACAACACTTAACCGAAAG 60.497 45.833 0.00 0.00 0.00 2.62
224 228 2.567985 AGGGACAACAACACTTAACCG 58.432 47.619 0.00 0.00 0.00 4.44
248 252 2.975732 TGCATTCAGTTGCCACAAAA 57.024 40.000 0.00 0.00 42.06 2.44
249 253 2.975732 TTGCATTCAGTTGCCACAAA 57.024 40.000 0.00 0.00 42.06 2.83
250 254 3.391965 GAATTGCATTCAGTTGCCACAA 58.608 40.909 0.00 0.00 42.06 3.33
255 259 3.476295 TCTCGAATTGCATTCAGTTGC 57.524 42.857 0.00 0.00 43.07 4.17
307 311 8.283291 CAGTAAAATGTGAAGACAGGAGTAAAC 58.717 37.037 0.00 0.00 34.87 2.01
329 334 6.096282 GGACCAAAATATAAAGCCAAGCAGTA 59.904 38.462 0.00 0.00 0.00 2.74
333 338 4.142249 ACGGACCAAAATATAAAGCCAAGC 60.142 41.667 0.00 0.00 0.00 4.01
473 483 4.559153 CAATTAAAGTTGGGCAGTGAAGG 58.441 43.478 0.00 0.00 0.00 3.46
519 530 6.582636 TGTAACAGATAACAGCCTTCCTATG 58.417 40.000 0.00 0.00 0.00 2.23
522 533 4.532521 ACTGTAACAGATAACAGCCTTCCT 59.467 41.667 0.00 0.00 45.65 3.36
578 591 8.333235 AGCTAAGTGTCTATATAGTCAGCCTAT 58.667 37.037 9.57 0.00 39.71 2.57
619 632 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
620 633 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
621 634 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
640 653 8.907885 GCCCATATTCAAATCTCTAAAAAGACT 58.092 33.333 0.00 0.00 0.00 3.24
641 654 8.907885 AGCCCATATTCAAATCTCTAAAAAGAC 58.092 33.333 0.00 0.00 0.00 3.01
644 657 9.693739 TGTAGCCCATATTCAAATCTCTAAAAA 57.306 29.630 0.00 0.00 0.00 1.94
645 658 9.866655 ATGTAGCCCATATTCAAATCTCTAAAA 57.133 29.630 0.00 0.00 29.82 1.52
647 660 9.944376 GTATGTAGCCCATATTCAAATCTCTAA 57.056 33.333 0.00 0.00 38.29 2.10
648 661 9.100197 TGTATGTAGCCCATATTCAAATCTCTA 57.900 33.333 0.00 0.00 38.29 2.43
649 662 7.977818 TGTATGTAGCCCATATTCAAATCTCT 58.022 34.615 0.00 0.00 38.29 3.10
650 663 8.097038 TCTGTATGTAGCCCATATTCAAATCTC 58.903 37.037 0.00 0.00 38.29 2.75
651 664 7.977818 TCTGTATGTAGCCCATATTCAAATCT 58.022 34.615 0.00 0.00 38.29 2.40
652 665 8.671921 CATCTGTATGTAGCCCATATTCAAATC 58.328 37.037 0.00 0.00 38.29 2.17
653 666 8.385491 TCATCTGTATGTAGCCCATATTCAAAT 58.615 33.333 0.00 0.00 38.29 2.32
654 667 7.744733 TCATCTGTATGTAGCCCATATTCAAA 58.255 34.615 0.00 0.00 38.29 2.69
655 668 7.315066 TCATCTGTATGTAGCCCATATTCAA 57.685 36.000 0.00 0.00 38.29 2.69
656 669 6.933514 TCATCTGTATGTAGCCCATATTCA 57.066 37.500 0.00 0.00 38.29 2.57
660 673 9.936329 TCTATATTCATCTGTATGTAGCCCATA 57.064 33.333 0.00 0.00 34.86 2.74
661 674 8.700051 GTCTATATTCATCTGTATGTAGCCCAT 58.300 37.037 0.00 0.00 37.58 4.00
662 675 7.148069 CGTCTATATTCATCTGTATGTAGCCCA 60.148 40.741 0.00 0.00 34.50 5.36
663 676 7.148052 ACGTCTATATTCATCTGTATGTAGCCC 60.148 40.741 0.00 0.00 34.50 5.19
664 677 7.763356 ACGTCTATATTCATCTGTATGTAGCC 58.237 38.462 0.00 0.00 34.50 3.93
682 695 9.999660 TGAATCTACACTCTAGAATACGTCTAT 57.000 33.333 0.00 0.00 38.20 1.98
683 696 9.258826 GTGAATCTACACTCTAGAATACGTCTA 57.741 37.037 0.00 0.00 36.56 2.59
684 697 7.988599 AGTGAATCTACACTCTAGAATACGTCT 59.011 37.037 0.00 0.00 46.36 4.18
685 698 8.145316 AGTGAATCTACACTCTAGAATACGTC 57.855 38.462 0.00 0.00 46.36 4.34
698 711 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
699 712 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
700 713 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
701 714 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
702 715 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
703 716 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
704 717 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
705 718 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
706 719 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
707 720 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
708 721 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
709 722 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
710 723 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
711 724 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
713 726 9.764363 CTAATATGGACTACATACAGAGCAAAA 57.236 33.333 0.00 0.00 44.41 2.44
714 727 9.143155 TCTAATATGGACTACATACAGAGCAAA 57.857 33.333 0.00 0.00 44.41 3.68
715 728 8.706322 TCTAATATGGACTACATACAGAGCAA 57.294 34.615 0.00 0.00 44.41 3.91
716 729 8.706322 TTCTAATATGGACTACATACAGAGCA 57.294 34.615 0.00 0.00 44.41 4.26
773 786 3.316308 GTGCAGGACAATGGATGTATTCC 59.684 47.826 0.00 0.00 44.12 3.01
774 787 3.947196 TGTGCAGGACAATGGATGTATTC 59.053 43.478 0.00 0.00 44.12 1.75
775 788 3.949754 CTGTGCAGGACAATGGATGTATT 59.050 43.478 0.00 0.00 44.12 1.89
806 819 6.823182 AGCCTTCCCATATTTATTTTTGTTGC 59.177 34.615 0.00 0.00 0.00 4.17
873 2036 6.369615 AGAAATTTGGCAATAAATCTGTGCAC 59.630 34.615 10.75 10.75 40.12 4.57
926 2089 4.659111 TGATGCAAATGGAATAAGGCAG 57.341 40.909 0.00 0.00 31.79 4.85
966 2129 9.694137 CCTTAACCTACAATAGAACATAGCTAC 57.306 37.037 0.00 0.00 0.00 3.58
1017 2180 0.321387 TTGTATTTGCGGCCGGTACA 60.321 50.000 29.38 14.20 0.00 2.90
1239 2405 2.816087 TGCATCTTTTCTTGCCTCAGAC 59.184 45.455 0.00 0.00 38.08 3.51
1295 2461 6.379386 GCCTTTTCATGTTTAGTGGTACTTC 58.621 40.000 0.00 0.00 0.00 3.01
1317 2483 1.832167 TGCAGTTTCCCACTTGGCC 60.832 57.895 0.00 0.00 30.92 5.36
1412 2578 5.594317 AGTGCTGTAAATGATAAATCCCCAC 59.406 40.000 0.00 0.00 0.00 4.61
1500 2666 7.885399 AGCTTCTTATCTAAAATGTCCAGTTGT 59.115 33.333 0.00 0.00 0.00 3.32
1537 2703 2.212652 GTCCCTTTTTGCTTTGCCAAG 58.787 47.619 0.00 0.00 0.00 3.61
1539 2705 1.198713 TGTCCCTTTTTGCTTTGCCA 58.801 45.000 0.00 0.00 0.00 4.92
1603 2769 6.667414 TCAACCTTGCCTTCCAATGTATTTAT 59.333 34.615 0.00 0.00 32.13 1.40
1605 2771 4.837860 TCAACCTTGCCTTCCAATGTATTT 59.162 37.500 0.00 0.00 32.13 1.40
1608 2774 3.153919 GTCAACCTTGCCTTCCAATGTA 58.846 45.455 0.00 0.00 32.13 2.29
1625 2791 9.317936 CAGCAAGTGACTTATCTAATATGTCAA 57.682 33.333 13.89 1.62 45.53 3.18
1638 2804 4.584743 TCTCTCAGTTCAGCAAGTGACTTA 59.415 41.667 0.00 0.00 37.09 2.24
1689 2855 4.498241 TCAACCGAGTCAGAATCTCATTG 58.502 43.478 0.00 0.00 33.12 2.82
1690 2856 4.808414 TCAACCGAGTCAGAATCTCATT 57.192 40.909 0.00 0.00 32.79 2.57
1706 2872 4.038042 CCAAACCCTTCTTTCTCTTCAACC 59.962 45.833 0.00 0.00 0.00 3.77
1740 2906 7.649057 TCACATCGTCTAAGGTTATATCACTG 58.351 38.462 0.00 0.00 0.00 3.66
1764 2930 6.481644 CCACTATCTCTTTGGCAAATACTCTC 59.518 42.308 13.89 0.00 0.00 3.20
1768 2934 6.349300 TCTCCACTATCTCTTTGGCAAATAC 58.651 40.000 13.89 0.00 0.00 1.89
1803 2969 1.000019 ACCATCTGCTGCATGCCTT 60.000 52.632 16.68 0.00 42.00 4.35
1827 2993 4.666512 ACCCTAATGCATAATCCACCATC 58.333 43.478 0.00 0.00 0.00 3.51
1896 3062 1.923204 CGACGAGGAAGAATGCTCTTG 59.077 52.381 0.00 0.00 42.19 3.02
2006 3172 4.429854 GGAATAATTCCTGTCCTGAGCT 57.570 45.455 0.00 0.00 46.57 4.09
2055 3221 9.654663 GGTAATATGACCAATAGACATACCTTC 57.345 37.037 4.11 0.00 39.51 3.46
2070 3236 9.530633 GGAGTATCGAATTATGGTAATATGACC 57.469 37.037 1.67 1.67 36.42 4.02
2138 3304 6.176183 AGCACAGAAAATAATGAGCTACAGT 58.824 36.000 0.00 0.00 40.80 3.55
2184 3350 5.713389 TCAGCCATCTCAAATCAGAAATGTT 59.287 36.000 0.00 0.00 0.00 2.71
2203 3370 2.026641 ACATGGCATATGTTGTCAGCC 58.973 47.619 0.00 0.00 44.71 4.85
2292 3460 2.409975 AGCTGCATGTTGTTTTGATGC 58.590 42.857 1.02 0.00 42.38 3.91
2337 3511 4.998051 AGCCTAATTGAGGGAAAGAACAA 58.002 39.130 0.00 0.00 46.81 2.83
2372 3546 8.125978 TGCTTTCACAATGATTCCTTTCTATT 57.874 30.769 0.00 0.00 0.00 1.73
2539 4226 7.710907 GCATAAGATAGTACACTGGAATGAACA 59.289 37.037 0.00 0.00 0.00 3.18
2540 4227 7.096023 CGCATAAGATAGTACACTGGAATGAAC 60.096 40.741 0.00 0.00 0.00 3.18
2674 4361 2.355363 CTTGTCGGCGTTCGTGGA 60.355 61.111 6.85 0.00 40.32 4.02
2680 4367 2.227089 CTCCTAGGCTTGTCGGCGTT 62.227 60.000 6.85 0.00 44.22 4.84
2785 4472 2.107292 CGAGGAGAAGTCGAGCCGA 61.107 63.158 0.00 0.00 39.92 5.54
2897 4585 4.159135 ACACCGGTACTAACTTACATCAGG 59.841 45.833 6.87 0.00 0.00 3.86
2898 4586 5.100259 CACACCGGTACTAACTTACATCAG 58.900 45.833 6.87 0.00 0.00 2.90
2899 4587 4.618927 GCACACCGGTACTAACTTACATCA 60.619 45.833 6.87 0.00 0.00 3.07
2900 4588 3.861689 GCACACCGGTACTAACTTACATC 59.138 47.826 6.87 0.00 0.00 3.06
2901 4589 3.368739 GGCACACCGGTACTAACTTACAT 60.369 47.826 6.87 0.00 0.00 2.29
2902 4590 2.029110 GGCACACCGGTACTAACTTACA 60.029 50.000 6.87 0.00 0.00 2.41
2903 4591 2.232208 AGGCACACCGGTACTAACTTAC 59.768 50.000 6.87 0.00 42.76 2.34
2904 4592 2.231964 CAGGCACACCGGTACTAACTTA 59.768 50.000 6.87 0.00 42.76 2.24
2905 4593 1.001633 CAGGCACACCGGTACTAACTT 59.998 52.381 6.87 0.00 42.76 2.66
2916 4604 1.077716 GTATGGTCCCAGGCACACC 60.078 63.158 0.00 0.00 0.00 4.16
2935 4623 5.770685 ATCAAAGCTAAAGAGGGAAGACT 57.229 39.130 0.00 0.00 0.00 3.24
3016 4705 0.460284 GTCTGTCCATAGTGGCACCG 60.460 60.000 15.27 2.97 37.47 4.94
3065 4754 6.261826 AGTTGCCAGATAATCAATTAGCACTC 59.738 38.462 1.33 0.00 31.44 3.51
3066 4755 6.039047 CAGTTGCCAGATAATCAATTAGCACT 59.961 38.462 1.33 0.00 31.44 4.40
3166 4857 2.256117 AACTCCAAACACCCGAGAAG 57.744 50.000 0.00 0.00 0.00 2.85
3215 4907 9.431887 TCATTTACATAGTAGTTGAGACAAACC 57.568 33.333 0.00 0.00 0.00 3.27
3220 4912 7.253684 GCACGTCATTTACATAGTAGTTGAGAC 60.254 40.741 0.00 0.00 0.00 3.36
3230 4922 3.183754 TCGGTGCACGTCATTTACATAG 58.816 45.455 11.45 0.00 44.69 2.23
3237 4929 2.899976 TGATAATCGGTGCACGTCATT 58.100 42.857 11.45 10.78 44.69 2.57
3257 4949 6.228258 TGCGACTAGGACAGTTTTAATCTTT 58.772 36.000 0.00 0.00 37.72 2.52
3286 4978 5.931146 TGCAGAAACGAAAAATATGGCAAAT 59.069 32.000 0.00 0.00 0.00 2.32
3326 5018 1.141254 TCCCCTTGCGTAAGTGTTCAA 59.859 47.619 12.42 0.00 41.68 2.69
3328 5020 1.270678 ACTCCCCTTGCGTAAGTGTTC 60.271 52.381 12.42 0.00 41.68 3.18
3329 5021 0.763035 ACTCCCCTTGCGTAAGTGTT 59.237 50.000 12.42 0.00 41.68 3.32
3330 5022 0.763035 AACTCCCCTTGCGTAAGTGT 59.237 50.000 12.42 3.09 41.68 3.55
3331 5023 1.892209 AAACTCCCCTTGCGTAAGTG 58.108 50.000 12.42 0.13 41.68 3.16
3332 5024 2.369532 TGTAAACTCCCCTTGCGTAAGT 59.630 45.455 12.42 0.00 41.68 2.24
3333 5025 3.048337 TGTAAACTCCCCTTGCGTAAG 57.952 47.619 6.24 6.24 43.44 2.34
3334 5026 3.488778 TTGTAAACTCCCCTTGCGTAA 57.511 42.857 0.00 0.00 0.00 3.18
3335 5027 3.488778 TTTGTAAACTCCCCTTGCGTA 57.511 42.857 0.00 0.00 0.00 4.42
3363 5625 9.679661 TGTTGTATTTCCTATCTCAGCATTTAA 57.320 29.630 0.00 0.00 0.00 1.52
3368 5630 6.108687 CAGTGTTGTATTTCCTATCTCAGCA 58.891 40.000 0.00 0.00 0.00 4.41
3382 5644 4.832266 TCCAAGAAATTGGCAGTGTTGTAT 59.168 37.500 2.03 0.00 41.81 2.29
3383 5645 4.211125 TCCAAGAAATTGGCAGTGTTGTA 58.789 39.130 2.03 0.00 41.81 2.41
3384 5646 3.030291 TCCAAGAAATTGGCAGTGTTGT 58.970 40.909 2.03 0.00 41.81 3.32
3386 5648 3.642848 ACATCCAAGAAATTGGCAGTGTT 59.357 39.130 2.03 0.00 41.81 3.32
3387 5649 3.233507 ACATCCAAGAAATTGGCAGTGT 58.766 40.909 2.03 4.85 41.81 3.55
3388 5650 3.947910 ACATCCAAGAAATTGGCAGTG 57.052 42.857 2.03 4.31 41.81 3.66
3420 5720 3.255149 CAGTCTCTGTGTACCGTAACCTT 59.745 47.826 0.00 0.00 0.00 3.50
3428 5728 3.589988 CACCATTCAGTCTCTGTGTACC 58.410 50.000 0.00 0.00 32.61 3.34
3510 5810 8.944029 TCCTTTACATAGCGATATAGAGTACAC 58.056 37.037 0.00 0.00 0.00 2.90
3515 5815 7.074507 ACGTCCTTTACATAGCGATATAGAG 57.925 40.000 0.00 0.00 0.00 2.43
3516 5816 7.173735 TCAACGTCCTTTACATAGCGATATAGA 59.826 37.037 0.00 0.00 0.00 1.98
3517 5817 7.303261 TCAACGTCCTTTACATAGCGATATAG 58.697 38.462 0.00 0.00 0.00 1.31
3518 5818 7.205737 TCAACGTCCTTTACATAGCGATATA 57.794 36.000 0.00 0.00 0.00 0.86
3519 5819 6.080648 TCAACGTCCTTTACATAGCGATAT 57.919 37.500 0.00 0.00 0.00 1.63
3520 5820 5.503662 TCAACGTCCTTTACATAGCGATA 57.496 39.130 0.00 0.00 0.00 2.92
3521 5821 4.380841 TCAACGTCCTTTACATAGCGAT 57.619 40.909 0.00 0.00 0.00 4.58
3522 5822 3.853831 TCAACGTCCTTTACATAGCGA 57.146 42.857 0.00 0.00 0.00 4.93
3523 5823 4.804139 AGAATCAACGTCCTTTACATAGCG 59.196 41.667 0.00 0.00 0.00 4.26
3580 5880 6.672357 GCAATGTTAAGAGTTACAGGCTTACG 60.672 42.308 0.00 0.00 0.00 3.18
3643 5960 1.399440 CACCGTGCTGATTCTTCATGG 59.601 52.381 12.42 12.42 41.44 3.66
3748 6065 3.921677 TCCATAACTCTTGTCGTGGTTC 58.078 45.455 0.00 0.00 34.35 3.62
3822 6139 2.531601 GGGGGTTTTGTCCGGGAGA 61.532 63.158 0.00 0.00 0.00 3.71
3823 6140 2.035155 GGGGGTTTTGTCCGGGAG 59.965 66.667 0.00 0.00 0.00 4.30
3824 6141 2.086194 AAGGGGGTTTTGTCCGGGA 61.086 57.895 0.00 0.00 0.00 5.14
3825 6142 1.906333 CAAGGGGGTTTTGTCCGGG 60.906 63.158 0.00 0.00 0.00 5.73
3826 6143 0.757561 AACAAGGGGGTTTTGTCCGG 60.758 55.000 0.00 0.00 37.77 5.14
3827 6144 1.116308 AAACAAGGGGGTTTTGTCCG 58.884 50.000 0.00 0.00 37.72 4.79
3858 6175 6.145535 GTGATTTCTTGGTGTGAAGATGTTC 58.854 40.000 0.00 0.00 31.98 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.