Multiple sequence alignment - TraesCS1D01G090200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G090200 chr1D 100.000 5911 0 0 1 5911 76497331 76503241 0.000000e+00 10916.0
1 TraesCS1D01G090200 chr1B 94.392 4012 172 20 1505 5497 119883789 119887766 0.000000e+00 6113.0
2 TraesCS1D01G090200 chr1B 95.019 522 18 3 973 1488 119883288 119883807 0.000000e+00 813.0
3 TraesCS1D01G090200 chr1B 88.164 414 41 5 5496 5905 119889193 119889602 2.480000e-133 486.0
4 TraesCS1D01G090200 chr1A 95.163 3163 116 19 1505 4654 77104283 77107421 0.000000e+00 4959.0
5 TraesCS1D01G090200 chr1A 94.551 679 30 4 4686 5361 77107420 77108094 0.000000e+00 1042.0
6 TraesCS1D01G090200 chr1A 95.785 522 14 4 973 1488 77103782 77104301 0.000000e+00 835.0
7 TraesCS1D01G090200 chr1A 91.845 515 29 8 5401 5905 77109243 77109754 0.000000e+00 706.0
8 TraesCS1D01G090200 chr1A 83.333 552 83 6 1 550 77102990 77103534 8.840000e-138 501.0
9 TraesCS1D01G090200 chr3B 78.244 501 82 23 5148 5631 86364303 86364793 4.480000e-76 296.0
10 TraesCS1D01G090200 chr6A 90.099 101 9 1 572 671 614466054 614466154 4.810000e-26 130.0
11 TraesCS1D01G090200 chr4D 80.357 112 9 2 572 670 363577373 363577484 8.220000e-09 73.1
12 TraesCS1D01G090200 chr2A 76.667 120 22 5 275 392 593900383 593900268 1.780000e-05 62.1
13 TraesCS1D01G090200 chr7D 83.871 62 9 1 611 671 536156177 536156116 2.300000e-04 58.4
14 TraesCS1D01G090200 chr7D 100.000 30 0 0 610 639 95136915 95136886 8.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G090200 chr1D 76497331 76503241 5910 False 10916.000000 10916 100.0000 1 5911 1 chr1D.!!$F1 5910
1 TraesCS1D01G090200 chr1B 119883288 119889602 6314 False 2470.666667 6113 92.5250 973 5905 3 chr1B.!!$F1 4932
2 TraesCS1D01G090200 chr1A 77102990 77109754 6764 False 1608.600000 4959 92.1354 1 5905 5 chr1A.!!$F1 5904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 888 0.034477 AACGAGATTGGGGGCGATTT 60.034 50.0 0.00 0.0 0.00 2.17 F
890 892 0.106519 AGATTGGGGGCGATTTGGAG 60.107 55.0 0.00 0.0 0.00 3.86 F
2556 2577 0.246635 ACGTTGGATGACGAAGGGAG 59.753 55.0 4.29 0.0 45.47 4.30 F
4295 4322 0.318762 GTGAGAAAGCACTCCCGTCT 59.681 55.0 0.00 0.0 36.22 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 2555 1.606994 CCCTTCGTCATCCAACGTTGA 60.607 52.381 29.35 15.43 43.08 3.18 R
2718 2742 3.423058 AAGCCCTAGAATACTCACCCT 57.577 47.619 0.00 0.00 0.00 4.34 R
4477 4507 0.035317 TCAGCGTGGCAGTTCTGATT 59.965 50.000 8.61 0.00 31.35 2.57 R
5348 5383 0.539669 AACCTTAGTGCACAAGGGCC 60.540 55.000 32.75 0.00 45.81 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.202090 GGGGGCGGTATCTTATATAAGACG 60.202 50.000 24.17 22.38 44.30 4.18
36 37 4.735873 GCGGTATCTTATATAAGACGGGGC 60.736 50.000 24.17 20.23 44.30 5.80
119 120 1.587547 TGCAATACACAACACGAGCA 58.412 45.000 0.00 0.00 0.00 4.26
126 127 3.334583 ACACAACACGAGCAGGAATAT 57.665 42.857 0.00 0.00 0.00 1.28
138 139 5.276868 CGAGCAGGAATATTGTTTTACCTCG 60.277 44.000 0.00 0.00 0.00 4.63
167 168 3.069586 GGGCCTAAAAATGGATAAGTGGC 59.930 47.826 0.84 0.00 37.34 5.01
168 169 4.322080 GCCTAAAAATGGATAAGTGGCC 57.678 45.455 0.00 0.00 32.50 5.36
170 171 2.959507 AAAAATGGATAAGTGGCCGC 57.040 45.000 8.71 8.71 0.00 6.53
171 172 1.111277 AAAATGGATAAGTGGCCGCC 58.889 50.000 14.07 1.04 0.00 6.13
173 174 1.978455 AATGGATAAGTGGCCGCCGA 61.978 55.000 14.07 0.46 0.00 5.54
187 188 1.519719 GCCGACTGCTCCTCTCAAT 59.480 57.895 0.00 0.00 36.87 2.57
192 193 2.479389 CGACTGCTCCTCTCAATCAGTC 60.479 54.545 9.82 9.82 45.97 3.51
194 195 3.951037 GACTGCTCCTCTCAATCAGTCTA 59.049 47.826 11.96 0.00 45.95 2.59
195 196 3.699038 ACTGCTCCTCTCAATCAGTCTAC 59.301 47.826 0.00 0.00 33.16 2.59
196 197 3.027412 TGCTCCTCTCAATCAGTCTACC 58.973 50.000 0.00 0.00 0.00 3.18
197 198 3.027412 GCTCCTCTCAATCAGTCTACCA 58.973 50.000 0.00 0.00 0.00 3.25
245 246 2.996249 ATCCGTACCTCACTAGACGA 57.004 50.000 0.00 0.00 37.50 4.20
246 247 2.015736 TCCGTACCTCACTAGACGAC 57.984 55.000 0.00 0.00 37.50 4.34
249 250 1.322936 CGTACCTCACTAGACGACGAC 59.677 57.143 0.00 0.00 37.50 4.34
273 274 2.683933 GGAGGAGCCTCGTCCCAA 60.684 66.667 20.41 0.00 43.63 4.12
274 275 2.579738 GAGGAGCCTCGTCCCAAC 59.420 66.667 2.98 0.00 37.31 3.77
277 278 1.072505 GGAGCCTCGTCCCAACAAA 59.927 57.895 0.00 0.00 0.00 2.83
278 279 1.235281 GGAGCCTCGTCCCAACAAAC 61.235 60.000 0.00 0.00 0.00 2.93
280 281 2.613506 GCCTCGTCCCAACAAACGG 61.614 63.158 0.00 0.00 39.31 4.44
281 282 2.613506 CCTCGTCCCAACAAACGGC 61.614 63.158 0.00 0.00 39.31 5.68
282 283 2.592287 TCGTCCCAACAAACGGCC 60.592 61.111 0.00 0.00 39.31 6.13
298 299 3.353836 CCGAACACCTTGTGGGCG 61.354 66.667 0.00 2.21 37.94 6.13
299 300 3.353836 CGAACACCTTGTGGGCGG 61.354 66.667 0.00 0.00 37.94 6.13
359 360 2.440247 CCATCCTTGGCCCGTTCC 60.440 66.667 0.00 0.00 35.85 3.62
375 376 2.433838 CCTGCAGCAGGTCTGTCG 60.434 66.667 30.97 5.74 45.82 4.35
382 383 3.059982 CAGGTCTGTCGAAGCCCA 58.940 61.111 0.00 0.00 0.00 5.36
389 390 0.824109 CTGTCGAAGCCCACATCCTA 59.176 55.000 0.00 0.00 0.00 2.94
390 391 1.414181 CTGTCGAAGCCCACATCCTAT 59.586 52.381 0.00 0.00 0.00 2.57
392 393 1.139058 GTCGAAGCCCACATCCTATGT 59.861 52.381 0.00 0.00 46.22 2.29
401 402 1.568504 ACATCCTATGTGGTGACCGT 58.431 50.000 0.00 0.00 43.01 4.83
402 403 1.207089 ACATCCTATGTGGTGACCGTG 59.793 52.381 0.00 0.00 43.01 4.94
421 422 1.049402 GGAGGTAGAGGTGGTATGCC 58.951 60.000 0.00 0.00 0.00 4.40
424 425 0.674534 GGTAGAGGTGGTATGCCGAG 59.325 60.000 0.00 0.00 37.67 4.63
425 426 1.688772 GTAGAGGTGGTATGCCGAGA 58.311 55.000 0.00 0.00 37.67 4.04
432 433 2.280457 GTATGCCGAGAGCTGCCC 60.280 66.667 0.00 0.00 44.23 5.36
433 434 2.763710 TATGCCGAGAGCTGCCCA 60.764 61.111 0.00 0.00 44.23 5.36
462 463 0.463833 GCAGGCGGGCTTTGTAGTAT 60.464 55.000 0.00 0.00 0.00 2.12
465 466 1.838077 AGGCGGGCTTTGTAGTATTCT 59.162 47.619 0.00 0.00 0.00 2.40
466 467 2.238898 AGGCGGGCTTTGTAGTATTCTT 59.761 45.455 0.00 0.00 0.00 2.52
468 469 4.102681 AGGCGGGCTTTGTAGTATTCTTAT 59.897 41.667 0.00 0.00 0.00 1.73
470 471 4.213482 GCGGGCTTTGTAGTATTCTTATGG 59.787 45.833 0.00 0.00 0.00 2.74
472 473 4.213482 GGGCTTTGTAGTATTCTTATGGCG 59.787 45.833 0.00 0.00 0.00 5.69
473 474 4.213482 GGCTTTGTAGTATTCTTATGGCGG 59.787 45.833 0.00 0.00 0.00 6.13
477 478 2.440539 AGTATTCTTATGGCGGCGAG 57.559 50.000 12.98 0.00 0.00 5.03
480 481 1.871080 ATTCTTATGGCGGCGAGAAG 58.129 50.000 12.98 12.36 32.25 2.85
542 543 3.792736 GGTGGGCCCGTAGATGCA 61.793 66.667 19.37 0.00 0.00 3.96
543 544 2.203070 GTGGGCCCGTAGATGCAG 60.203 66.667 19.37 0.00 0.00 4.41
544 545 2.687200 TGGGCCCGTAGATGCAGT 60.687 61.111 19.37 0.00 0.00 4.40
545 546 2.203070 GGGCCCGTAGATGCAGTG 60.203 66.667 5.69 0.00 0.00 3.66
546 547 2.203070 GGCCCGTAGATGCAGTGG 60.203 66.667 0.00 0.00 0.00 4.00
547 548 2.897350 GCCCGTAGATGCAGTGGC 60.897 66.667 0.00 0.00 41.68 5.01
548 549 2.586079 CCCGTAGATGCAGTGGCG 60.586 66.667 0.00 0.00 45.35 5.69
549 550 2.494445 CCGTAGATGCAGTGGCGA 59.506 61.111 0.00 0.00 45.35 5.54
550 551 1.153647 CCGTAGATGCAGTGGCGAA 60.154 57.895 0.00 0.00 45.35 4.70
551 552 0.530650 CCGTAGATGCAGTGGCGAAT 60.531 55.000 0.00 0.00 45.35 3.34
552 553 0.855349 CGTAGATGCAGTGGCGAATC 59.145 55.000 0.00 0.00 45.35 2.52
553 554 1.536922 CGTAGATGCAGTGGCGAATCT 60.537 52.381 0.00 0.00 45.35 2.40
554 555 2.287608 CGTAGATGCAGTGGCGAATCTA 60.288 50.000 0.00 0.00 45.35 1.98
555 556 2.522836 AGATGCAGTGGCGAATCTAG 57.477 50.000 0.00 0.00 45.35 2.43
556 557 1.069823 AGATGCAGTGGCGAATCTAGG 59.930 52.381 0.00 0.00 45.35 3.02
557 558 0.533755 ATGCAGTGGCGAATCTAGGC 60.534 55.000 0.00 0.00 45.35 3.93
563 564 1.976112 GGCGAATCTAGGCCCTAGG 59.024 63.158 17.73 0.06 43.64 3.02
595 596 4.473520 CGGAGCGTGAGGCCCATT 62.474 66.667 0.00 0.00 45.17 3.16
596 597 2.044946 GGAGCGTGAGGCCCATTT 60.045 61.111 0.00 0.00 45.17 2.32
597 598 2.115291 GGAGCGTGAGGCCCATTTC 61.115 63.158 0.00 0.00 45.17 2.17
598 599 2.044946 AGCGTGAGGCCCATTTCC 60.045 61.111 0.00 0.00 45.17 3.13
599 600 2.044946 GCGTGAGGCCCATTTCCT 60.045 61.111 0.00 0.00 36.46 3.36
600 601 1.678970 GCGTGAGGCCCATTTCCTT 60.679 57.895 0.00 0.00 33.24 3.36
601 602 1.250840 GCGTGAGGCCCATTTCCTTT 61.251 55.000 0.00 0.00 33.24 3.11
602 603 0.527565 CGTGAGGCCCATTTCCTTTG 59.472 55.000 0.00 0.00 33.24 2.77
603 604 1.632589 GTGAGGCCCATTTCCTTTGT 58.367 50.000 0.00 0.00 33.24 2.83
604 605 2.802719 GTGAGGCCCATTTCCTTTGTA 58.197 47.619 0.00 0.00 33.24 2.41
605 606 2.755103 GTGAGGCCCATTTCCTTTGTAG 59.245 50.000 0.00 0.00 33.24 2.74
606 607 2.647299 TGAGGCCCATTTCCTTTGTAGA 59.353 45.455 0.00 0.00 33.24 2.59
607 608 3.017442 GAGGCCCATTTCCTTTGTAGAC 58.983 50.000 0.00 0.00 33.24 2.59
608 609 2.100197 GGCCCATTTCCTTTGTAGACC 58.900 52.381 0.00 0.00 0.00 3.85
609 610 1.743394 GCCCATTTCCTTTGTAGACCG 59.257 52.381 0.00 0.00 0.00 4.79
610 611 2.878526 GCCCATTTCCTTTGTAGACCGT 60.879 50.000 0.00 0.00 0.00 4.83
611 612 3.620472 GCCCATTTCCTTTGTAGACCGTA 60.620 47.826 0.00 0.00 0.00 4.02
612 613 4.189231 CCCATTTCCTTTGTAGACCGTAG 58.811 47.826 0.00 0.00 0.00 3.51
613 614 3.621715 CCATTTCCTTTGTAGACCGTAGC 59.378 47.826 0.00 0.00 0.00 3.58
614 615 4.250464 CATTTCCTTTGTAGACCGTAGCA 58.750 43.478 0.00 0.00 0.00 3.49
615 616 4.339872 TTTCCTTTGTAGACCGTAGCAA 57.660 40.909 0.00 0.00 0.00 3.91
616 617 4.546829 TTCCTTTGTAGACCGTAGCAAT 57.453 40.909 0.00 0.00 0.00 3.56
617 618 4.546829 TCCTTTGTAGACCGTAGCAATT 57.453 40.909 0.00 0.00 0.00 2.32
618 619 4.250464 TCCTTTGTAGACCGTAGCAATTG 58.750 43.478 0.00 0.00 0.00 2.32
619 620 3.181510 CCTTTGTAGACCGTAGCAATTGC 60.182 47.826 23.05 23.05 42.49 3.56
635 636 5.821204 GCAATTGCTACAGTATACAAAGGG 58.179 41.667 23.21 0.00 38.21 3.95
636 637 5.221048 GCAATTGCTACAGTATACAAAGGGG 60.221 44.000 23.21 0.00 38.21 4.79
637 638 4.497291 TTGCTACAGTATACAAAGGGGG 57.503 45.455 5.50 0.00 0.00 5.40
638 639 2.171870 TGCTACAGTATACAAAGGGGGC 59.828 50.000 5.50 1.16 0.00 5.80
639 640 2.486727 GCTACAGTATACAAAGGGGGCC 60.487 54.545 5.50 0.00 0.00 5.80
640 641 1.676248 ACAGTATACAAAGGGGGCCA 58.324 50.000 4.39 0.00 0.00 5.36
641 642 1.564348 ACAGTATACAAAGGGGGCCAG 59.436 52.381 4.39 0.00 0.00 4.85
642 643 1.133792 CAGTATACAAAGGGGGCCAGG 60.134 57.143 4.39 0.00 0.00 4.45
643 644 0.185175 GTATACAAAGGGGGCCAGGG 59.815 60.000 4.39 0.00 0.00 4.45
644 645 1.651214 TATACAAAGGGGGCCAGGGC 61.651 60.000 4.39 3.77 41.06 5.19
661 662 3.164269 CACCGGGCTAGGCTGGAT 61.164 66.667 42.19 26.58 33.69 3.41
662 663 2.844839 ACCGGGCTAGGCTGGATC 60.845 66.667 42.19 14.59 33.69 3.36
663 664 3.631046 CCGGGCTAGGCTGGATCC 61.631 72.222 35.25 4.20 0.00 3.36
664 665 3.996124 CGGGCTAGGCTGGATCCG 61.996 72.222 17.28 15.72 0.00 4.18
665 666 2.844839 GGGCTAGGCTGGATCCGT 60.845 66.667 16.80 0.00 0.00 4.69
666 667 2.737830 GGCTAGGCTGGATCCGTC 59.262 66.667 9.46 3.56 0.00 4.79
667 668 2.737830 GCTAGGCTGGATCCGTCC 59.262 66.667 7.39 10.57 45.31 4.79
668 669 2.873525 GCTAGGCTGGATCCGTCCC 61.874 68.421 16.09 11.66 44.41 4.46
669 670 1.152440 CTAGGCTGGATCCGTCCCT 60.152 63.158 18.30 18.30 44.41 4.20
670 671 1.457643 TAGGCTGGATCCGTCCCTG 60.458 63.158 21.58 4.67 44.41 4.45
671 672 2.238319 TAGGCTGGATCCGTCCCTGT 62.238 60.000 21.58 7.46 44.41 4.00
672 673 2.187946 GCTGGATCCGTCCCTGTG 59.812 66.667 7.39 0.00 44.41 3.66
673 674 2.660064 GCTGGATCCGTCCCTGTGT 61.660 63.158 7.39 0.00 44.41 3.72
674 675 1.517832 CTGGATCCGTCCCTGTGTC 59.482 63.158 7.39 0.00 44.41 3.67
675 676 2.284798 CTGGATCCGTCCCTGTGTCG 62.285 65.000 7.39 0.00 44.41 4.35
676 677 2.050350 GGATCCGTCCCTGTGTCGA 61.050 63.158 0.00 0.00 38.69 4.20
677 678 1.392710 GGATCCGTCCCTGTGTCGAT 61.393 60.000 0.00 0.00 38.69 3.59
680 681 0.683179 TCCGTCCCTGTGTCGATGAT 60.683 55.000 0.00 0.00 0.00 2.45
684 685 1.141665 CCCTGTGTCGATGATGCGA 59.858 57.895 0.00 0.00 38.07 5.10
685 686 0.460109 CCCTGTGTCGATGATGCGAA 60.460 55.000 0.00 0.00 42.55 4.70
687 688 0.926155 CTGTGTCGATGATGCGAAGG 59.074 55.000 0.00 0.00 42.55 3.46
693 694 0.460109 CGATGATGCGAAGGTGGTGA 60.460 55.000 0.00 0.00 0.00 4.02
705 706 1.235281 GGTGGTGAAGAGGCCGAAAC 61.235 60.000 0.00 0.00 0.00 2.78
707 708 1.001633 GTGGTGAAGAGGCCGAAACTA 59.998 52.381 0.00 0.00 0.00 2.24
709 710 1.405661 GGTGAAGAGGCCGAAACTAGG 60.406 57.143 0.00 0.00 0.00 3.02
714 715 1.183549 GAGGCCGAAACTAGGTGAGA 58.816 55.000 0.00 0.00 0.00 3.27
715 716 0.896226 AGGCCGAAACTAGGTGAGAC 59.104 55.000 0.00 0.00 0.00 3.36
724 726 1.209990 ACTAGGTGAGACGACGAGGAT 59.790 52.381 0.00 0.00 0.00 3.24
725 727 1.600013 CTAGGTGAGACGACGAGGATG 59.400 57.143 0.00 0.00 0.00 3.51
737 739 0.176680 CGAGGATGACAAGGTCAGGG 59.823 60.000 5.25 0.00 46.04 4.45
738 740 1.280457 GAGGATGACAAGGTCAGGGT 58.720 55.000 5.25 0.00 46.04 4.34
739 741 0.987294 AGGATGACAAGGTCAGGGTG 59.013 55.000 5.25 0.00 46.04 4.61
740 742 0.693049 GGATGACAAGGTCAGGGTGT 59.307 55.000 5.25 0.00 46.04 4.16
742 744 0.401738 ATGACAAGGTCAGGGTGTGG 59.598 55.000 5.25 0.00 46.04 4.17
744 746 0.472471 GACAAGGTCAGGGTGTGGAA 59.528 55.000 0.00 0.00 32.09 3.53
746 748 0.890996 CAAGGTCAGGGTGTGGAAGC 60.891 60.000 0.00 0.00 0.00 3.86
747 749 1.352622 AAGGTCAGGGTGTGGAAGCA 61.353 55.000 0.00 0.00 0.00 3.91
749 751 1.754745 GTCAGGGTGTGGAAGCAGA 59.245 57.895 0.00 0.00 0.00 4.26
754 756 4.037222 TCAGGGTGTGGAAGCAGATAATA 58.963 43.478 0.00 0.00 0.00 0.98
755 757 4.101585 TCAGGGTGTGGAAGCAGATAATAG 59.898 45.833 0.00 0.00 0.00 1.73
758 760 3.433598 GGTGTGGAAGCAGATAATAGCCA 60.434 47.826 0.00 0.00 0.00 4.75
760 762 4.453819 GTGTGGAAGCAGATAATAGCCATC 59.546 45.833 0.00 0.00 0.00 3.51
771 773 2.586258 ATAGCCATCGTGTCACAGAC 57.414 50.000 3.42 0.00 0.00 3.51
773 775 0.037882 AGCCATCGTGTCACAGACAG 60.038 55.000 3.42 0.00 43.57 3.51
776 778 0.037882 CATCGTGTCACAGACAGGCT 60.038 55.000 13.31 3.24 43.57 4.58
784 786 0.324738 CACAGACAGGCTAGGGGAGA 60.325 60.000 0.00 0.00 0.00 3.71
790 792 2.039879 GACAGGCTAGGGGAGAACAAAA 59.960 50.000 0.00 0.00 0.00 2.44
791 793 2.040412 ACAGGCTAGGGGAGAACAAAAG 59.960 50.000 0.00 0.00 0.00 2.27
792 794 1.636003 AGGCTAGGGGAGAACAAAAGG 59.364 52.381 0.00 0.00 0.00 3.11
794 796 2.041216 GGCTAGGGGAGAACAAAAGGAA 59.959 50.000 0.00 0.00 0.00 3.36
795 797 3.499745 GGCTAGGGGAGAACAAAAGGAAA 60.500 47.826 0.00 0.00 0.00 3.13
797 799 4.218635 GCTAGGGGAGAACAAAAGGAAAAG 59.781 45.833 0.00 0.00 0.00 2.27
799 801 2.037251 GGGGAGAACAAAAGGAAAAGGC 59.963 50.000 0.00 0.00 0.00 4.35
801 803 2.698274 GGAGAACAAAAGGAAAAGGCCA 59.302 45.455 5.01 0.00 0.00 5.36
802 804 3.492656 GGAGAACAAAAGGAAAAGGCCAC 60.493 47.826 5.01 0.00 0.00 5.01
816 818 4.038080 CCACGGGCTTTCGTTGGC 62.038 66.667 0.00 0.00 41.86 4.52
817 819 4.038080 CACGGGCTTTCGTTGGCC 62.038 66.667 0.00 0.00 46.89 5.36
821 823 3.733960 GGCTTTCGTTGGCCGTCC 61.734 66.667 0.00 0.00 38.91 4.79
823 825 2.943653 CTTTCGTTGGCCGTCCAC 59.056 61.111 0.00 0.00 43.33 4.02
826 828 4.651008 TCGTTGGCCGTCCACGAC 62.651 66.667 13.47 0.00 43.33 4.34
828 830 2.737376 GTTGGCCGTCCACGACTC 60.737 66.667 0.00 0.00 43.33 3.36
834 836 1.374252 CCGTCCACGACTCCCTTTG 60.374 63.158 0.00 0.00 43.02 2.77
835 837 2.027625 CGTCCACGACTCCCTTTGC 61.028 63.158 0.00 0.00 43.02 3.68
836 838 2.027625 GTCCACGACTCCCTTTGCG 61.028 63.158 0.00 0.00 0.00 4.85
843 845 2.049433 CTCCCTTTGCGTCGACGT 60.049 61.111 35.48 0.00 42.22 4.34
847 849 1.083657 CCTTTGCGTCGACGTGTTG 60.084 57.895 35.48 23.10 42.22 3.33
849 851 3.158011 TTTGCGTCGACGTGTTGGC 62.158 57.895 35.48 20.08 42.22 4.52
850 852 4.874977 TGCGTCGACGTGTTGGCA 62.875 61.111 35.48 22.37 42.22 4.92
851 853 4.059459 GCGTCGACGTGTTGGCAG 62.059 66.667 35.48 8.32 42.22 4.85
852 854 2.354188 CGTCGACGTGTTGGCAGA 60.354 61.111 29.08 0.00 34.11 4.26
853 855 1.947146 CGTCGACGTGTTGGCAGAA 60.947 57.895 29.08 0.00 34.11 3.02
854 856 1.282248 CGTCGACGTGTTGGCAGAAT 61.282 55.000 29.08 0.00 34.11 2.40
855 857 0.438830 GTCGACGTGTTGGCAGAATC 59.561 55.000 0.00 0.00 0.00 2.52
856 858 0.669318 TCGACGTGTTGGCAGAATCC 60.669 55.000 0.00 0.00 0.00 3.01
857 859 0.948623 CGACGTGTTGGCAGAATCCA 60.949 55.000 0.00 0.00 0.00 3.41
858 860 1.234821 GACGTGTTGGCAGAATCCAA 58.765 50.000 0.00 0.00 43.36 3.53
859 861 1.606668 GACGTGTTGGCAGAATCCAAA 59.393 47.619 0.00 0.00 46.63 3.28
860 862 1.336755 ACGTGTTGGCAGAATCCAAAC 59.663 47.619 0.00 0.00 46.63 2.93
861 863 1.336440 CGTGTTGGCAGAATCCAAACA 59.664 47.619 0.00 0.00 46.63 2.83
863 865 2.622942 GTGTTGGCAGAATCCAAACAGA 59.377 45.455 0.00 0.00 46.63 3.41
864 866 2.622942 TGTTGGCAGAATCCAAACAGAC 59.377 45.455 0.00 0.00 46.63 3.51
865 867 1.522668 TGGCAGAATCCAAACAGACG 58.477 50.000 0.00 0.00 32.18 4.18
867 869 0.874390 GCAGAATCCAAACAGACGCA 59.126 50.000 0.00 0.00 0.00 5.24
868 870 1.266718 GCAGAATCCAAACAGACGCAA 59.733 47.619 0.00 0.00 0.00 4.85
869 871 2.918131 GCAGAATCCAAACAGACGCAAC 60.918 50.000 0.00 0.00 0.00 4.17
870 872 1.531149 AGAATCCAAACAGACGCAACG 59.469 47.619 0.00 0.00 0.00 4.10
872 874 1.148310 ATCCAAACAGACGCAACGAG 58.852 50.000 0.00 0.00 0.00 4.18
873 875 0.103390 TCCAAACAGACGCAACGAGA 59.897 50.000 0.00 0.00 0.00 4.04
875 877 1.531149 CCAAACAGACGCAACGAGATT 59.469 47.619 0.00 0.00 0.00 2.40
876 878 2.563976 CAAACAGACGCAACGAGATTG 58.436 47.619 0.00 0.00 41.69 2.67
877 879 1.148310 AACAGACGCAACGAGATTGG 58.852 50.000 0.00 0.00 38.88 3.16
881 883 3.508840 CGCAACGAGATTGGGGGC 61.509 66.667 0.00 0.00 45.27 5.80
882 884 3.508840 GCAACGAGATTGGGGGCG 61.509 66.667 0.00 0.00 38.88 6.13
884 886 1.153168 CAACGAGATTGGGGGCGAT 60.153 57.895 0.00 0.00 34.34 4.58
885 887 0.748005 CAACGAGATTGGGGGCGATT 60.748 55.000 0.00 0.00 34.34 3.34
886 888 0.034477 AACGAGATTGGGGGCGATTT 60.034 50.000 0.00 0.00 0.00 2.17
887 889 0.748005 ACGAGATTGGGGGCGATTTG 60.748 55.000 0.00 0.00 0.00 2.32
888 890 1.447317 CGAGATTGGGGGCGATTTGG 61.447 60.000 0.00 0.00 0.00 3.28
890 892 0.106519 AGATTGGGGGCGATTTGGAG 60.107 55.000 0.00 0.00 0.00 3.86
891 893 0.395724 GATTGGGGGCGATTTGGAGT 60.396 55.000 0.00 0.00 0.00 3.85
895 897 2.710902 GGGGCGATTTGGAGTTGGC 61.711 63.158 0.00 0.00 0.00 4.52
896 898 2.710902 GGGCGATTTGGAGTTGGCC 61.711 63.158 0.00 0.00 38.37 5.36
897 899 1.678970 GGCGATTTGGAGTTGGCCT 60.679 57.895 3.32 0.00 37.57 5.19
898 900 0.393808 GGCGATTTGGAGTTGGCCTA 60.394 55.000 3.32 0.00 37.57 3.93
903 905 4.278419 GCGATTTGGAGTTGGCCTAATAAT 59.722 41.667 3.32 0.00 34.31 1.28
904 906 5.472137 GCGATTTGGAGTTGGCCTAATAATA 59.528 40.000 3.32 0.00 34.31 0.98
905 907 6.016610 GCGATTTGGAGTTGGCCTAATAATAA 60.017 38.462 3.32 0.00 34.31 1.40
906 908 7.469456 GCGATTTGGAGTTGGCCTAATAATAAA 60.469 37.037 3.32 0.00 34.31 1.40
909 911 9.660544 ATTTGGAGTTGGCCTAATAATAAAGAT 57.339 29.630 3.32 0.00 32.77 2.40
910 912 8.463930 TTGGAGTTGGCCTAATAATAAAGATG 57.536 34.615 3.32 0.00 0.00 2.90
911 913 7.811282 TGGAGTTGGCCTAATAATAAAGATGA 58.189 34.615 3.32 0.00 0.00 2.92
912 914 8.278639 TGGAGTTGGCCTAATAATAAAGATGAA 58.721 33.333 3.32 0.00 0.00 2.57
913 915 9.131791 GGAGTTGGCCTAATAATAAAGATGAAA 57.868 33.333 3.32 0.00 0.00 2.69
937 939 1.304381 GGAACCCCTGCTTGCATCA 60.304 57.895 0.00 0.00 0.00 3.07
940 942 1.033746 AACCCCTGCTTGCATCATCG 61.034 55.000 0.00 0.00 0.00 3.84
941 943 1.452651 CCCCTGCTTGCATCATCGT 60.453 57.895 0.00 0.00 0.00 3.73
942 944 1.442526 CCCCTGCTTGCATCATCGTC 61.443 60.000 0.00 0.00 0.00 4.20
943 945 1.442526 CCCTGCTTGCATCATCGTCC 61.443 60.000 0.00 0.00 0.00 4.79
944 946 0.745486 CCTGCTTGCATCATCGTCCA 60.745 55.000 0.00 0.00 0.00 4.02
945 947 1.089112 CTGCTTGCATCATCGTCCAA 58.911 50.000 0.00 0.00 0.00 3.53
946 948 1.469703 CTGCTTGCATCATCGTCCAAA 59.530 47.619 0.00 0.00 0.00 3.28
947 949 2.093890 TGCTTGCATCATCGTCCAAAT 58.906 42.857 0.00 0.00 0.00 2.32
948 950 3.277715 TGCTTGCATCATCGTCCAAATA 58.722 40.909 0.00 0.00 0.00 1.40
949 951 3.884693 TGCTTGCATCATCGTCCAAATAT 59.115 39.130 0.00 0.00 0.00 1.28
950 952 4.023792 TGCTTGCATCATCGTCCAAATATC 60.024 41.667 0.00 0.00 0.00 1.63
951 953 4.214971 GCTTGCATCATCGTCCAAATATCT 59.785 41.667 0.00 0.00 0.00 1.98
952 954 5.616424 GCTTGCATCATCGTCCAAATATCTC 60.616 44.000 0.00 0.00 0.00 2.75
953 955 3.989817 TGCATCATCGTCCAAATATCTCG 59.010 43.478 0.00 0.00 0.00 4.04
954 956 4.237724 GCATCATCGTCCAAATATCTCGA 58.762 43.478 0.00 0.00 35.14 4.04
955 957 4.867047 GCATCATCGTCCAAATATCTCGAT 59.133 41.667 0.00 0.00 40.95 3.59
956 958 5.005203 GCATCATCGTCCAAATATCTCGATC 59.995 44.000 0.00 0.00 38.82 3.69
957 959 4.723248 TCATCGTCCAAATATCTCGATCG 58.277 43.478 9.36 9.36 38.82 3.69
958 960 3.554259 TCGTCCAAATATCTCGATCGG 57.446 47.619 16.41 6.26 0.00 4.18
959 961 2.882761 TCGTCCAAATATCTCGATCGGT 59.117 45.455 16.41 4.57 0.00 4.69
960 962 4.067192 TCGTCCAAATATCTCGATCGGTA 58.933 43.478 16.41 6.75 0.00 4.02
961 963 4.698780 TCGTCCAAATATCTCGATCGGTAT 59.301 41.667 16.41 11.42 0.00 2.73
962 964 5.182570 TCGTCCAAATATCTCGATCGGTATT 59.817 40.000 16.41 13.88 0.00 1.89
963 965 5.512082 CGTCCAAATATCTCGATCGGTATTC 59.488 44.000 16.41 5.55 0.00 1.75
964 966 6.622549 GTCCAAATATCTCGATCGGTATTCT 58.377 40.000 16.41 6.51 0.00 2.40
965 967 7.413767 CGTCCAAATATCTCGATCGGTATTCTA 60.414 40.741 16.41 0.00 0.00 2.10
966 968 8.242053 GTCCAAATATCTCGATCGGTATTCTAA 58.758 37.037 16.41 4.70 0.00 2.10
967 969 8.799367 TCCAAATATCTCGATCGGTATTCTAAA 58.201 33.333 16.41 0.00 0.00 1.85
968 970 9.077674 CCAAATATCTCGATCGGTATTCTAAAG 57.922 37.037 16.41 1.59 0.00 1.85
969 971 9.841880 CAAATATCTCGATCGGTATTCTAAAGA 57.158 33.333 16.41 7.54 0.00 2.52
1000 1002 0.589708 CGATCGGTATACTGACGCCA 59.410 55.000 16.66 0.00 33.47 5.69
1076 1084 2.517450 CCAAATCGCGCGACCTCTC 61.517 63.158 37.37 0.00 0.00 3.20
1297 1306 1.742831 GAGTTTGCCGATTATGTGCCA 59.257 47.619 0.00 0.00 0.00 4.92
1484 1493 7.210174 TGCTCCTGTGATATTTACATCTACAC 58.790 38.462 0.00 0.00 0.00 2.90
1485 1494 7.069950 TGCTCCTGTGATATTTACATCTACACT 59.930 37.037 0.00 0.00 0.00 3.55
1486 1495 7.383572 GCTCCTGTGATATTTACATCTACACTG 59.616 40.741 0.00 0.00 0.00 3.66
1487 1496 8.533569 TCCTGTGATATTTACATCTACACTGA 57.466 34.615 0.00 0.00 0.00 3.41
1488 1497 8.414003 TCCTGTGATATTTACATCTACACTGAC 58.586 37.037 0.00 0.00 0.00 3.51
1489 1498 8.197439 CCTGTGATATTTACATCTACACTGACA 58.803 37.037 0.00 0.00 0.00 3.58
1490 1499 9.242477 CTGTGATATTTACATCTACACTGACAG 57.758 37.037 0.00 0.00 0.00 3.51
1491 1500 8.749354 TGTGATATTTACATCTACACTGACAGT 58.251 33.333 1.07 1.07 0.00 3.55
1492 1501 9.587772 GTGATATTTACATCTACACTGACAGTT 57.412 33.333 5.04 0.58 0.00 3.16
1493 1502 9.803315 TGATATTTACATCTACACTGACAGTTC 57.197 33.333 5.04 0.00 0.00 3.01
1494 1503 9.803315 GATATTTACATCTACACTGACAGTTCA 57.197 33.333 5.04 0.00 0.00 3.18
1496 1505 8.902540 ATTTACATCTACACTGACAGTTCAAA 57.097 30.769 5.04 0.00 0.00 2.69
1497 1506 8.725405 TTTACATCTACACTGACAGTTCAAAA 57.275 30.769 5.04 0.00 0.00 2.44
1498 1507 8.725405 TTACATCTACACTGACAGTTCAAAAA 57.275 30.769 5.04 0.00 0.00 1.94
1563 1573 1.742308 TAGGCCCCAGTCTCTGTTTT 58.258 50.000 0.00 0.00 0.00 2.43
1571 1581 4.757149 CCCCAGTCTCTGTTTTAGAACTTG 59.243 45.833 0.00 0.00 36.70 3.16
1630 1642 4.693095 TGCTAGAACATGTAATTTGACGCA 59.307 37.500 0.00 0.00 0.00 5.24
1747 1760 3.111853 TCATCACTGAAGTCTGCGTTT 57.888 42.857 0.00 0.00 0.00 3.60
1873 1886 3.653539 AAACCCGTAAGTTGAAATGGC 57.346 42.857 0.00 0.00 0.00 4.40
1979 1998 5.299279 TCCAATGAGTTCTTTGGTTTGAGTC 59.701 40.000 20.02 0.00 45.83 3.36
2176 2197 1.425066 ACTGGATTGAAGGAGTTGGCA 59.575 47.619 0.00 0.00 0.00 4.92
2208 2229 3.131046 GTGGGGATTATTTGTTGCCTGAG 59.869 47.826 0.00 0.00 0.00 3.35
2217 2238 1.961277 GTTGCCTGAGACCACCACG 60.961 63.158 0.00 0.00 0.00 4.94
2262 2283 3.003378 GTGCTGGGAAAAGTACACTTGTC 59.997 47.826 4.00 4.00 39.05 3.18
2301 2322 5.152623 TCTTTGACAAAGATGACGATCCT 57.847 39.130 23.67 0.00 42.31 3.24
2390 2411 2.095364 GTGAGTGCAGCTGATTTTCCTG 60.095 50.000 20.43 0.00 0.00 3.86
2556 2577 0.246635 ACGTTGGATGACGAAGGGAG 59.753 55.000 4.29 0.00 45.47 4.30
2908 2932 9.158233 AGAATTATTTGAAATGTTTCCTGCATG 57.842 29.630 0.00 0.00 36.36 4.06
2923 2947 6.252599 TCCTGCATGTACTATCCTGAAAAT 57.747 37.500 0.00 0.00 0.00 1.82
3326 3352 7.095649 CGCGAGACATTTATGAATCCATTCTTA 60.096 37.037 0.00 0.00 37.67 2.10
3485 3511 5.510430 ACATATTTCCTTGGAGGAGGTTTC 58.490 41.667 0.00 0.00 46.73 2.78
3696 3722 4.202398 ACTCACGGGGATAGACTATCGTTA 60.202 45.833 14.86 3.44 36.03 3.18
3783 3809 8.532186 TTTTTGATATACCAGGTATTGCACAT 57.468 30.769 17.72 4.51 30.79 3.21
4164 4191 4.618378 TCATAGGTAGGCCCCAATTTTT 57.382 40.909 0.00 0.00 34.57 1.94
4225 4252 8.073467 TCAATCTTTACCTTTTTCCTTGTTGT 57.927 30.769 0.00 0.00 0.00 3.32
4295 4322 0.318762 GTGAGAAAGCACTCCCGTCT 59.681 55.000 0.00 0.00 36.22 4.18
4379 4409 3.113191 TGGGGCAATCACAAATATGGT 57.887 42.857 0.00 0.00 0.00 3.55
4454 4484 1.651737 TAAGCACTAGGGGTCAAGCA 58.348 50.000 0.00 0.00 0.00 3.91
4477 4507 3.306472 AACTTGGTTGGGCAAGAACTA 57.694 42.857 0.00 0.00 33.06 2.24
4492 4522 3.589988 AGAACTAATCAGAACTGCCACG 58.410 45.455 0.00 0.00 0.00 4.94
4607 4639 5.845065 ACACTCCTAAATACCCCCTCTATTC 59.155 44.000 0.00 0.00 0.00 1.75
4608 4640 6.085416 CACTCCTAAATACCCCCTCTATTCT 58.915 44.000 0.00 0.00 0.00 2.40
4610 4642 7.901861 CACTCCTAAATACCCCCTCTATTCTAT 59.098 40.741 0.00 0.00 0.00 1.98
4696 4728 6.663093 AGAGAGAGAGTACAACTGAATGTGAT 59.337 38.462 0.00 0.00 34.75 3.06
4756 4788 7.282675 TCGTTTGAACATTTCTTTAGTGGGTAA 59.717 33.333 0.00 0.00 0.00 2.85
4803 4835 2.045438 ATGGGCGCGAAACCATCA 60.045 55.556 20.20 4.12 43.84 3.07
4883 4915 2.363711 TATGCGCCGTAGCCCTTCTG 62.364 60.000 4.18 0.00 36.02 3.02
5043 5075 2.880268 TCGAAGAAGACGGTGTCACTTA 59.120 45.455 2.35 0.00 34.08 2.24
5072 5104 8.228464 CGTATACGATATGTACTGTCTGAACAT 58.772 37.037 20.58 0.23 43.02 2.71
5094 5126 8.455903 ACATATATATGTGCAAGAAGCTTTGT 57.544 30.769 24.39 0.00 44.66 2.83
5109 5141 4.184629 AGCTTTGTACTGCAGTGTATAGC 58.815 43.478 29.57 27.05 0.00 2.97
5231 5263 2.418609 GGCAGTGCAAACCTTTGACTTT 60.419 45.455 18.61 0.00 40.55 2.66
5309 5344 6.518493 ACTTGCACATCATTCTTGTTTTGAT 58.482 32.000 0.00 0.00 0.00 2.57
5348 5383 3.922240 CCATGCCATGTTTCTCTTTTTCG 59.078 43.478 3.63 0.00 0.00 3.46
5361 5396 1.040339 TTTTTCGGCCCTTGTGCACT 61.040 50.000 19.41 0.00 0.00 4.40
5382 5417 9.717942 TGCACTAAGGTTTTGCAATTTATTTAT 57.282 25.926 0.00 0.00 43.16 1.40
5437 6580 6.176183 CCTCGGCTATGATTCCATTTTAGAT 58.824 40.000 0.00 0.00 34.31 1.98
5475 6622 5.429957 ACTTGTGCACTCTCAATTTCTTC 57.570 39.130 19.41 0.00 0.00 2.87
5531 8105 2.877097 TGCTTCACCTCAATGCCTTA 57.123 45.000 0.00 0.00 0.00 2.69
5564 8138 1.656652 ACATCTCGATTGGCCTTTCG 58.343 50.000 18.27 18.27 36.72 3.46
5580 8154 7.158021 TGGCCTTTCGTCATTTGAAATAAAAT 58.842 30.769 3.32 0.00 35.01 1.82
5581 8155 7.330700 TGGCCTTTCGTCATTTGAAATAAAATC 59.669 33.333 3.32 0.00 35.01 2.17
5582 8156 7.545615 GGCCTTTCGTCATTTGAAATAAAATCT 59.454 33.333 0.00 0.00 35.01 2.40
5583 8157 8.375465 GCCTTTCGTCATTTGAAATAAAATCTG 58.625 33.333 0.00 0.00 35.01 2.90
5631 8205 6.854496 TCTTAACACGATAAACTTGCTTGT 57.146 33.333 0.00 0.00 0.00 3.16
5646 8220 4.293662 TGCTTGTTGTCATACCCATACA 57.706 40.909 0.00 0.00 0.00 2.29
5738 8312 4.326507 AGCAGAGCAGCCGCAAGT 62.327 61.111 0.00 0.00 42.27 3.16
5747 8321 2.597510 GCCGCAAGTGAAAGGGGT 60.598 61.111 0.00 0.00 39.78 4.95
5749 8323 1.659794 CCGCAAGTGAAAGGGGTTG 59.340 57.895 0.00 0.00 33.55 3.77
5821 8400 4.217550 GTGTATCATCTCCTGCTCCTCTAC 59.782 50.000 0.00 0.00 0.00 2.59
5867 8446 6.294473 TCCTTGATTCTCTTATCCAGATTGC 58.706 40.000 0.00 0.00 0.00 3.56
5870 8449 6.244552 TGATTCTCTTATCCAGATTGCAGT 57.755 37.500 0.00 0.00 0.00 4.40
5871 8450 6.053650 TGATTCTCTTATCCAGATTGCAGTG 58.946 40.000 0.00 0.00 0.00 3.66
5877 8456 0.401356 TCCAGATTGCAGTGCCTTCA 59.599 50.000 13.72 0.00 0.00 3.02
5884 8463 0.328926 TGCAGTGCCTTCATGATCCA 59.671 50.000 13.72 0.00 0.00 3.41
5886 8465 2.029623 GCAGTGCCTTCATGATCCATT 58.970 47.619 2.85 0.00 0.00 3.16
5901 8480 8.034215 TCATGATCCATTGTTTGGTGAATTAAC 58.966 33.333 0.00 0.00 46.52 2.01
5905 8484 6.744112 TCCATTGTTTGGTGAATTAACTCAC 58.256 36.000 8.53 8.53 46.52 3.51
5906 8485 6.322456 TCCATTGTTTGGTGAATTAACTCACA 59.678 34.615 17.95 2.76 46.31 3.58
5907 8486 6.420604 CCATTGTTTGGTGAATTAACTCACAC 59.579 38.462 17.95 8.82 46.31 3.82
5908 8487 5.508200 TGTTTGGTGAATTAACTCACACC 57.492 39.130 17.95 14.72 46.31 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.202090 CCGTCTTATATAAGATACCGCCCC 60.202 50.000 24.42 10.72 43.49 5.80
32 33 1.070289 CCTATCGACTAGTTTGGCCCC 59.930 57.143 0.00 0.00 0.00 5.80
36 37 4.401519 TGTTCTCCCTATCGACTAGTTTGG 59.598 45.833 0.00 0.00 0.00 3.28
97 98 2.559872 CTCGTGTTGTGTATTGCAACG 58.440 47.619 0.00 0.00 46.48 4.10
98 99 2.286713 TGCTCGTGTTGTGTATTGCAAC 60.287 45.455 0.00 0.00 44.50 4.17
100 101 1.530720 CTGCTCGTGTTGTGTATTGCA 59.469 47.619 0.00 0.00 0.00 4.08
101 102 1.135972 CCTGCTCGTGTTGTGTATTGC 60.136 52.381 0.00 0.00 0.00 3.56
102 103 2.412870 TCCTGCTCGTGTTGTGTATTG 58.587 47.619 0.00 0.00 0.00 1.90
104 105 2.831685 TTCCTGCTCGTGTTGTGTAT 57.168 45.000 0.00 0.00 0.00 2.29
105 106 2.831685 ATTCCTGCTCGTGTTGTGTA 57.168 45.000 0.00 0.00 0.00 2.90
106 107 2.831685 TATTCCTGCTCGTGTTGTGT 57.168 45.000 0.00 0.00 0.00 3.72
107 108 3.436704 ACAATATTCCTGCTCGTGTTGTG 59.563 43.478 0.00 0.00 0.00 3.33
119 120 7.854337 TCCTTACGAGGTAAAACAATATTCCT 58.146 34.615 0.00 0.00 43.97 3.36
138 139 4.245251 TCCATTTTTAGGCCCTCCTTAC 57.755 45.455 0.00 0.00 40.66 2.34
149 150 3.243401 GGCGGCCACTTATCCATTTTTAG 60.243 47.826 15.62 0.00 0.00 1.85
154 155 1.525995 CGGCGGCCACTTATCCATT 60.526 57.895 20.71 0.00 0.00 3.16
170 171 0.820226 TGATTGAGAGGAGCAGTCGG 59.180 55.000 0.00 0.00 0.00 4.79
171 172 1.476085 ACTGATTGAGAGGAGCAGTCG 59.524 52.381 0.00 0.00 35.02 4.18
173 174 2.818921 AGACTGATTGAGAGGAGCAGT 58.181 47.619 0.00 0.00 42.03 4.40
187 188 0.704664 TGGAGGAGCTGGTAGACTGA 59.295 55.000 0.00 0.00 0.00 3.41
192 193 1.622811 GGATCATGGAGGAGCTGGTAG 59.377 57.143 0.00 0.00 0.00 3.18
194 195 0.030297 AGGATCATGGAGGAGCTGGT 60.030 55.000 0.00 0.00 0.00 4.00
195 196 1.072015 GAAGGATCATGGAGGAGCTGG 59.928 57.143 0.00 0.00 0.00 4.85
196 197 1.270199 CGAAGGATCATGGAGGAGCTG 60.270 57.143 0.00 0.00 0.00 4.24
197 198 1.047002 CGAAGGATCATGGAGGAGCT 58.953 55.000 0.00 0.00 0.00 4.09
228 229 0.649475 CGTCGTCTAGTGAGGTACGG 59.351 60.000 0.00 0.00 36.08 4.02
230 231 1.322936 CGTCGTCGTCTAGTGAGGTAC 59.677 57.143 0.00 0.00 0.00 3.34
236 237 2.099831 GCCCGTCGTCGTCTAGTG 59.900 66.667 0.71 0.00 35.01 2.74
257 258 1.827399 TTGTTGGGACGAGGCTCCTC 61.827 60.000 9.32 6.95 39.55 3.71
263 264 2.613506 GCCGTTTGTTGGGACGAGG 61.614 63.158 0.00 0.00 41.53 4.63
268 269 2.188161 GTTCGGCCGTTTGTTGGGA 61.188 57.895 27.15 0.00 0.00 4.37
271 272 1.298788 GGTGTTCGGCCGTTTGTTG 60.299 57.895 27.15 0.00 0.00 3.33
272 273 1.033202 AAGGTGTTCGGCCGTTTGTT 61.033 50.000 27.15 9.60 0.00 2.83
273 274 1.452470 AAGGTGTTCGGCCGTTTGT 60.452 52.632 27.15 3.15 0.00 2.83
274 275 1.008995 CAAGGTGTTCGGCCGTTTG 60.009 57.895 27.15 16.03 0.00 2.93
277 278 2.590575 CACAAGGTGTTCGGCCGT 60.591 61.111 27.15 0.06 0.00 5.68
278 279 3.353836 CCACAAGGTGTTCGGCCG 61.354 66.667 22.12 22.12 0.00 6.13
280 281 3.670377 GCCCACAAGGTGTTCGGC 61.670 66.667 1.56 1.56 36.45 5.54
281 282 3.353836 CGCCCACAAGGTGTTCGG 61.354 66.667 0.00 0.00 41.64 4.30
282 283 3.353836 CCGCCCACAAGGTGTTCG 61.354 66.667 0.00 0.00 45.49 3.95
330 331 0.909623 AAGGATGGTACCCTTCACCG 59.090 55.000 10.07 0.00 39.72 4.94
331 332 1.064685 CCAAGGATGGTACCCTTCACC 60.065 57.143 10.07 5.69 41.79 4.02
332 333 2.420058 CCAAGGATGGTACCCTTCAC 57.580 55.000 10.07 1.51 41.79 3.18
382 383 1.207089 CACGGTCACCACATAGGATGT 59.793 52.381 0.00 0.00 46.22 3.06
389 390 0.543410 TACCTCCACGGTCACCACAT 60.543 55.000 0.00 0.00 44.93 3.21
390 391 1.152504 TACCTCCACGGTCACCACA 60.153 57.895 0.00 0.00 44.93 4.17
392 393 0.611062 CTCTACCTCCACGGTCACCA 60.611 60.000 0.00 0.00 44.93 4.17
393 394 1.321074 CCTCTACCTCCACGGTCACC 61.321 65.000 0.00 0.00 44.93 4.02
395 396 0.611062 CACCTCTACCTCCACGGTCA 60.611 60.000 0.00 0.00 44.93 4.02
396 397 1.321074 CCACCTCTACCTCCACGGTC 61.321 65.000 0.00 0.00 44.93 4.79
398 399 0.033796 TACCACCTCTACCTCCACGG 60.034 60.000 0.00 0.00 39.35 4.94
400 401 1.413077 GCATACCACCTCTACCTCCAC 59.587 57.143 0.00 0.00 0.00 4.02
401 402 1.691482 GGCATACCACCTCTACCTCCA 60.691 57.143 0.00 0.00 35.26 3.86
402 403 1.049402 GGCATACCACCTCTACCTCC 58.951 60.000 0.00 0.00 35.26 4.30
421 422 4.803426 GGTCGTGGGCAGCTCTCG 62.803 72.222 10.59 10.59 0.00 4.04
424 425 4.767255 CAGGGTCGTGGGCAGCTC 62.767 72.222 0.00 0.00 0.00 4.09
444 445 1.940613 GAATACTACAAAGCCCGCCTG 59.059 52.381 0.00 0.00 0.00 4.85
446 447 2.327200 AGAATACTACAAAGCCCGCC 57.673 50.000 0.00 0.00 0.00 6.13
448 449 4.213482 GCCATAAGAATACTACAAAGCCCG 59.787 45.833 0.00 0.00 0.00 6.13
449 450 4.213482 CGCCATAAGAATACTACAAAGCCC 59.787 45.833 0.00 0.00 0.00 5.19
462 463 0.810031 GCTTCTCGCCGCCATAAGAA 60.810 55.000 0.00 0.00 0.00 2.52
465 466 2.584970 CGCTTCTCGCCGCCATAA 60.585 61.111 0.00 0.00 34.21 1.90
466 467 4.585526 CCGCTTCTCGCCGCCATA 62.586 66.667 0.00 0.00 36.73 2.74
484 485 2.338015 ACTCTTGCTGGCATTGCGG 61.338 57.895 1.91 0.00 0.00 5.69
486 487 1.214589 CCACTCTTGCTGGCATTGC 59.785 57.895 0.00 0.00 0.00 3.56
494 495 2.281761 CCAACGCCCACTCTTGCT 60.282 61.111 0.00 0.00 0.00 3.91
496 497 2.260869 CCACCAACGCCCACTCTTG 61.261 63.158 0.00 0.00 0.00 3.02
530 531 2.897350 GCCACTGCATCTACGGGC 60.897 66.667 0.00 0.00 37.47 6.13
533 534 0.855349 GATTCGCCACTGCATCTACG 59.145 55.000 0.00 0.00 37.32 3.51
536 537 1.069823 CCTAGATTCGCCACTGCATCT 59.930 52.381 0.00 0.00 35.23 2.90
541 542 4.445699 GGCCTAGATTCGCCACTG 57.554 61.111 0.00 0.00 45.01 3.66
545 546 1.976112 CCTAGGGCCTAGATTCGCC 59.024 63.158 36.69 0.00 44.92 5.54
546 547 1.293818 GCCTAGGGCCTAGATTCGC 59.706 63.158 36.69 27.46 44.06 4.70
578 579 3.976701 AAATGGGCCTCACGCTCCG 62.977 63.158 4.53 0.00 37.02 4.63
579 580 2.044946 AAATGGGCCTCACGCTCC 60.045 61.111 4.53 0.00 37.02 4.70
580 581 2.115291 GGAAATGGGCCTCACGCTC 61.115 63.158 4.53 0.00 39.08 5.03
581 582 2.044946 GGAAATGGGCCTCACGCT 60.045 61.111 4.53 0.00 37.74 5.07
582 583 1.250840 AAAGGAAATGGGCCTCACGC 61.251 55.000 4.53 0.00 33.76 5.34
583 584 0.527565 CAAAGGAAATGGGCCTCACG 59.472 55.000 4.53 0.00 33.76 4.35
584 585 1.632589 ACAAAGGAAATGGGCCTCAC 58.367 50.000 4.53 0.00 33.76 3.51
585 586 2.647299 TCTACAAAGGAAATGGGCCTCA 59.353 45.455 4.53 0.00 33.76 3.86
586 587 3.017442 GTCTACAAAGGAAATGGGCCTC 58.983 50.000 4.53 0.00 33.76 4.70
587 588 2.291605 GGTCTACAAAGGAAATGGGCCT 60.292 50.000 4.53 0.00 37.35 5.19
588 589 2.100197 GGTCTACAAAGGAAATGGGCC 58.900 52.381 0.00 0.00 0.00 5.80
589 590 1.743394 CGGTCTACAAAGGAAATGGGC 59.257 52.381 0.00 0.00 0.00 5.36
590 591 3.067684 ACGGTCTACAAAGGAAATGGG 57.932 47.619 0.00 0.00 0.00 4.00
591 592 3.621715 GCTACGGTCTACAAAGGAAATGG 59.378 47.826 0.00 0.00 0.00 3.16
592 593 4.250464 TGCTACGGTCTACAAAGGAAATG 58.750 43.478 0.00 0.00 0.00 2.32
593 594 4.546829 TGCTACGGTCTACAAAGGAAAT 57.453 40.909 0.00 0.00 0.00 2.17
594 595 4.339872 TTGCTACGGTCTACAAAGGAAA 57.660 40.909 0.00 0.00 0.00 3.13
595 596 4.546829 ATTGCTACGGTCTACAAAGGAA 57.453 40.909 0.00 0.00 0.00 3.36
596 597 4.250464 CAATTGCTACGGTCTACAAAGGA 58.750 43.478 0.00 0.00 0.00 3.36
597 598 3.181510 GCAATTGCTACGGTCTACAAAGG 60.182 47.826 23.21 0.00 38.21 3.11
598 599 4.003519 GCAATTGCTACGGTCTACAAAG 57.996 45.455 23.21 0.00 38.21 2.77
612 613 5.221048 CCCCTTTGTATACTGTAGCAATTGC 60.221 44.000 23.05 23.05 42.49 3.56
613 614 5.299279 CCCCCTTTGTATACTGTAGCAATTG 59.701 44.000 0.00 0.00 0.00 2.32
614 615 5.445964 CCCCCTTTGTATACTGTAGCAATT 58.554 41.667 4.17 0.00 0.00 2.32
615 616 4.688874 GCCCCCTTTGTATACTGTAGCAAT 60.689 45.833 4.17 0.00 0.00 3.56
616 617 3.371166 GCCCCCTTTGTATACTGTAGCAA 60.371 47.826 4.17 0.00 0.00 3.91
617 618 2.171870 GCCCCCTTTGTATACTGTAGCA 59.828 50.000 4.17 0.00 0.00 3.49
618 619 2.486727 GGCCCCCTTTGTATACTGTAGC 60.487 54.545 4.17 0.00 0.00 3.58
619 620 2.775384 TGGCCCCCTTTGTATACTGTAG 59.225 50.000 0.00 0.00 0.00 2.74
620 621 2.775384 CTGGCCCCCTTTGTATACTGTA 59.225 50.000 0.00 0.00 0.00 2.74
621 622 1.564348 CTGGCCCCCTTTGTATACTGT 59.436 52.381 0.00 0.00 0.00 3.55
622 623 1.133792 CCTGGCCCCCTTTGTATACTG 60.134 57.143 0.00 0.00 0.00 2.74
623 624 1.222567 CCTGGCCCCCTTTGTATACT 58.777 55.000 0.00 0.00 0.00 2.12
624 625 0.185175 CCCTGGCCCCCTTTGTATAC 59.815 60.000 0.00 0.00 0.00 1.47
625 626 1.651214 GCCCTGGCCCCCTTTGTATA 61.651 60.000 0.00 0.00 34.56 1.47
626 627 3.008954 GCCCTGGCCCCCTTTGTAT 62.009 63.158 0.00 0.00 34.56 2.29
627 628 3.668142 GCCCTGGCCCCCTTTGTA 61.668 66.667 0.00 0.00 34.56 2.41
644 645 3.164269 ATCCAGCCTAGCCCGGTG 61.164 66.667 0.00 0.00 0.00 4.94
645 646 2.844839 GATCCAGCCTAGCCCGGT 60.845 66.667 0.00 0.00 0.00 5.28
646 647 3.631046 GGATCCAGCCTAGCCCGG 61.631 72.222 6.95 0.00 0.00 5.73
647 648 3.996124 CGGATCCAGCCTAGCCCG 61.996 72.222 13.41 0.00 0.00 6.13
648 649 2.844839 ACGGATCCAGCCTAGCCC 60.845 66.667 13.41 0.00 0.00 5.19
649 650 2.737830 GACGGATCCAGCCTAGCC 59.262 66.667 13.41 0.00 0.00 3.93
650 651 2.737830 GGACGGATCCAGCCTAGC 59.262 66.667 13.41 0.00 45.47 3.42
658 659 1.392710 ATCGACACAGGGACGGATCC 61.393 60.000 0.00 0.00 45.42 3.36
659 660 0.249073 CATCGACACAGGGACGGATC 60.249 60.000 0.00 0.00 0.00 3.36
660 661 0.683179 TCATCGACACAGGGACGGAT 60.683 55.000 0.00 0.00 0.00 4.18
661 662 0.683179 ATCATCGACACAGGGACGGA 60.683 55.000 0.00 0.00 0.00 4.69
662 663 0.528466 CATCATCGACACAGGGACGG 60.528 60.000 0.00 0.00 0.00 4.79
663 664 1.148157 GCATCATCGACACAGGGACG 61.148 60.000 0.00 0.00 0.00 4.79
664 665 1.148157 CGCATCATCGACACAGGGAC 61.148 60.000 0.00 0.00 0.00 4.46
665 666 1.141665 CGCATCATCGACACAGGGA 59.858 57.895 0.00 0.00 0.00 4.20
666 667 0.460109 TTCGCATCATCGACACAGGG 60.460 55.000 0.00 0.00 38.30 4.45
667 668 0.926155 CTTCGCATCATCGACACAGG 59.074 55.000 0.00 0.00 38.30 4.00
668 669 0.926155 CCTTCGCATCATCGACACAG 59.074 55.000 0.00 0.00 38.30 3.66
669 670 0.246360 ACCTTCGCATCATCGACACA 59.754 50.000 0.00 0.00 38.30 3.72
670 671 0.647410 CACCTTCGCATCATCGACAC 59.353 55.000 0.00 0.00 38.30 3.67
671 672 0.460109 CCACCTTCGCATCATCGACA 60.460 55.000 0.00 0.00 38.30 4.35
672 673 0.460284 ACCACCTTCGCATCATCGAC 60.460 55.000 0.00 0.00 38.30 4.20
673 674 0.460109 CACCACCTTCGCATCATCGA 60.460 55.000 0.00 0.00 36.60 3.59
674 675 0.460109 TCACCACCTTCGCATCATCG 60.460 55.000 0.00 0.00 0.00 3.84
675 676 1.667724 CTTCACCACCTTCGCATCATC 59.332 52.381 0.00 0.00 0.00 2.92
676 677 1.278985 TCTTCACCACCTTCGCATCAT 59.721 47.619 0.00 0.00 0.00 2.45
677 678 0.684535 TCTTCACCACCTTCGCATCA 59.315 50.000 0.00 0.00 0.00 3.07
680 681 1.371183 CCTCTTCACCACCTTCGCA 59.629 57.895 0.00 0.00 0.00 5.10
684 685 1.415672 TTCGGCCTCTTCACCACCTT 61.416 55.000 0.00 0.00 0.00 3.50
685 686 1.415672 TTTCGGCCTCTTCACCACCT 61.416 55.000 0.00 0.00 0.00 4.00
687 688 0.250338 AGTTTCGGCCTCTTCACCAC 60.250 55.000 0.00 0.00 0.00 4.16
693 694 1.550976 CTCACCTAGTTTCGGCCTCTT 59.449 52.381 0.00 0.00 0.00 2.85
705 706 1.600013 CATCCTCGTCGTCTCACCTAG 59.400 57.143 0.00 0.00 0.00 3.02
707 708 0.035343 TCATCCTCGTCGTCTCACCT 60.035 55.000 0.00 0.00 0.00 4.00
709 710 0.803117 TGTCATCCTCGTCGTCTCAC 59.197 55.000 0.00 0.00 0.00 3.51
714 715 0.526662 GACCTTGTCATCCTCGTCGT 59.473 55.000 0.00 0.00 32.09 4.34
715 716 0.526211 TGACCTTGTCATCCTCGTCG 59.474 55.000 0.00 0.00 37.67 5.12
724 726 0.692756 TCCACACCCTGACCTTGTCA 60.693 55.000 0.00 0.00 40.50 3.58
725 727 0.472471 TTCCACACCCTGACCTTGTC 59.528 55.000 0.00 0.00 0.00 3.18
737 739 3.808728 TGGCTATTATCTGCTTCCACAC 58.191 45.455 0.00 0.00 0.00 3.82
738 740 4.645535 GATGGCTATTATCTGCTTCCACA 58.354 43.478 0.00 0.00 0.00 4.17
739 741 3.681897 CGATGGCTATTATCTGCTTCCAC 59.318 47.826 0.00 0.00 0.00 4.02
740 742 3.324846 ACGATGGCTATTATCTGCTTCCA 59.675 43.478 0.00 0.00 0.00 3.53
742 744 4.310769 ACACGATGGCTATTATCTGCTTC 58.689 43.478 0.00 0.00 0.00 3.86
744 746 3.321968 TGACACGATGGCTATTATCTGCT 59.678 43.478 0.00 0.00 0.00 4.24
746 748 4.620982 TGTGACACGATGGCTATTATCTG 58.379 43.478 0.22 0.00 0.00 2.90
747 749 4.584743 TCTGTGACACGATGGCTATTATCT 59.415 41.667 0.22 0.00 0.00 1.98
749 751 4.099419 TGTCTGTGACACGATGGCTATTAT 59.901 41.667 0.22 0.00 37.67 1.28
754 756 0.037882 CTGTCTGTGACACGATGGCT 60.038 55.000 0.22 0.00 37.67 4.75
755 757 1.016130 CCTGTCTGTGACACGATGGC 61.016 60.000 0.22 0.00 37.67 4.40
758 760 1.474478 CTAGCCTGTCTGTGACACGAT 59.526 52.381 0.22 0.00 37.67 3.73
760 762 0.109086 CCTAGCCTGTCTGTGACACG 60.109 60.000 0.22 0.00 37.67 4.49
771 773 2.619074 CCTTTTGTTCTCCCCTAGCCTG 60.619 54.545 0.00 0.00 0.00 4.85
773 775 1.633945 TCCTTTTGTTCTCCCCTAGCC 59.366 52.381 0.00 0.00 0.00 3.93
776 778 4.736473 CCTTTTCCTTTTGTTCTCCCCTA 58.264 43.478 0.00 0.00 0.00 3.53
784 786 1.138069 CCGTGGCCTTTTCCTTTTGTT 59.862 47.619 3.32 0.00 0.00 2.83
799 801 4.038080 GCCAACGAAAGCCCGTGG 62.038 66.667 0.00 0.00 42.54 4.94
816 818 1.374252 CAAAGGGAGTCGTGGACGG 60.374 63.158 0.00 0.00 37.67 4.79
817 819 2.027625 GCAAAGGGAGTCGTGGACG 61.028 63.158 0.00 0.00 37.67 4.79
821 823 3.550656 GACGCAAAGGGAGTCGTG 58.449 61.111 0.00 0.00 36.59 4.35
826 828 2.049433 ACGTCGACGCAAAGGGAG 60.049 61.111 35.92 8.80 44.43 4.30
828 830 2.241880 AACACGTCGACGCAAAGGG 61.242 57.895 35.92 20.28 44.43 3.95
834 836 4.059459 CTGCCAACACGTCGACGC 62.059 66.667 35.92 19.70 44.43 5.19
835 837 1.282248 ATTCTGCCAACACGTCGACG 61.282 55.000 34.58 34.58 46.33 5.12
836 838 0.438830 GATTCTGCCAACACGTCGAC 59.561 55.000 5.18 5.18 0.00 4.20
840 842 1.336755 GTTTGGATTCTGCCAACACGT 59.663 47.619 0.00 0.00 46.99 4.49
843 845 2.622942 GTCTGTTTGGATTCTGCCAACA 59.377 45.455 0.00 0.00 46.99 3.33
847 849 0.169009 GCGTCTGTTTGGATTCTGCC 59.831 55.000 0.00 0.00 0.00 4.85
849 851 2.662791 CGTTGCGTCTGTTTGGATTCTG 60.663 50.000 0.00 0.00 0.00 3.02
850 852 1.531149 CGTTGCGTCTGTTTGGATTCT 59.469 47.619 0.00 0.00 0.00 2.40
851 853 1.529438 TCGTTGCGTCTGTTTGGATTC 59.471 47.619 0.00 0.00 0.00 2.52
852 854 1.531149 CTCGTTGCGTCTGTTTGGATT 59.469 47.619 0.00 0.00 0.00 3.01
853 855 1.148310 CTCGTTGCGTCTGTTTGGAT 58.852 50.000 0.00 0.00 0.00 3.41
854 856 0.103390 TCTCGTTGCGTCTGTTTGGA 59.897 50.000 0.00 0.00 0.00 3.53
855 857 1.148310 ATCTCGTTGCGTCTGTTTGG 58.852 50.000 0.00 0.00 0.00 3.28
856 858 2.563976 CAATCTCGTTGCGTCTGTTTG 58.436 47.619 0.00 0.00 0.00 2.93
857 859 1.531149 CCAATCTCGTTGCGTCTGTTT 59.469 47.619 0.00 0.00 36.46 2.83
858 860 1.148310 CCAATCTCGTTGCGTCTGTT 58.852 50.000 0.00 0.00 36.46 3.16
859 861 0.670546 CCCAATCTCGTTGCGTCTGT 60.671 55.000 0.00 0.00 36.46 3.41
860 862 1.361668 CCCCAATCTCGTTGCGTCTG 61.362 60.000 0.00 0.00 36.46 3.51
861 863 1.079127 CCCCAATCTCGTTGCGTCT 60.079 57.895 0.00 0.00 36.46 4.18
863 865 2.046314 CCCCCAATCTCGTTGCGT 60.046 61.111 0.00 0.00 36.46 5.24
864 866 3.508840 GCCCCCAATCTCGTTGCG 61.509 66.667 0.00 0.00 36.46 4.85
865 867 3.508840 CGCCCCCAATCTCGTTGC 61.509 66.667 0.00 0.00 36.46 4.17
867 869 0.034477 AAATCGCCCCCAATCTCGTT 60.034 50.000 0.00 0.00 0.00 3.85
868 870 0.748005 CAAATCGCCCCCAATCTCGT 60.748 55.000 0.00 0.00 0.00 4.18
869 871 1.447317 CCAAATCGCCCCCAATCTCG 61.447 60.000 0.00 0.00 0.00 4.04
870 872 0.106719 TCCAAATCGCCCCCAATCTC 60.107 55.000 0.00 0.00 0.00 2.75
872 874 0.395724 ACTCCAAATCGCCCCCAATC 60.396 55.000 0.00 0.00 0.00 2.67
873 875 0.041090 AACTCCAAATCGCCCCCAAT 59.959 50.000 0.00 0.00 0.00 3.16
875 877 1.304052 CAACTCCAAATCGCCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
876 878 2.052104 CCAACTCCAAATCGCCCCC 61.052 63.158 0.00 0.00 0.00 5.40
877 879 2.710902 GCCAACTCCAAATCGCCCC 61.711 63.158 0.00 0.00 0.00 5.80
878 880 2.710902 GGCCAACTCCAAATCGCCC 61.711 63.158 0.00 0.00 0.00 6.13
881 883 7.504924 TTATTATTAGGCCAACTCCAAATCG 57.495 36.000 5.01 0.00 0.00 3.34
882 884 9.131791 TCTTTATTATTAGGCCAACTCCAAATC 57.868 33.333 5.01 0.00 0.00 2.17
884 886 8.912988 CATCTTTATTATTAGGCCAACTCCAAA 58.087 33.333 5.01 0.00 0.00 3.28
885 887 8.278639 TCATCTTTATTATTAGGCCAACTCCAA 58.721 33.333 5.01 0.00 0.00 3.53
886 888 7.811282 TCATCTTTATTATTAGGCCAACTCCA 58.189 34.615 5.01 0.00 0.00 3.86
887 889 8.691661 TTCATCTTTATTATTAGGCCAACTCC 57.308 34.615 5.01 0.00 0.00 3.85
890 892 9.612620 CGATTTCATCTTTATTATTAGGCCAAC 57.387 33.333 5.01 0.00 0.00 3.77
891 893 8.792633 CCGATTTCATCTTTATTATTAGGCCAA 58.207 33.333 5.01 0.00 0.00 4.52
895 897 7.333423 TCCGCCGATTTCATCTTTATTATTAGG 59.667 37.037 0.00 0.00 0.00 2.69
896 898 8.251750 TCCGCCGATTTCATCTTTATTATTAG 57.748 34.615 0.00 0.00 0.00 1.73
897 899 8.500773 GTTCCGCCGATTTCATCTTTATTATTA 58.499 33.333 0.00 0.00 0.00 0.98
898 900 7.360361 GTTCCGCCGATTTCATCTTTATTATT 58.640 34.615 0.00 0.00 0.00 1.40
903 905 2.940410 GGTTCCGCCGATTTCATCTTTA 59.060 45.455 0.00 0.00 0.00 1.85
904 906 1.743394 GGTTCCGCCGATTTCATCTTT 59.257 47.619 0.00 0.00 0.00 2.52
905 907 1.379527 GGTTCCGCCGATTTCATCTT 58.620 50.000 0.00 0.00 0.00 2.40
906 908 0.463833 GGGTTCCGCCGATTTCATCT 60.464 55.000 0.00 0.00 38.44 2.90
909 911 2.045731 GGGGTTCCGCCGATTTCA 60.046 61.111 0.00 0.00 38.44 2.69
910 912 2.112815 CAGGGGTTCCGCCGATTTC 61.113 63.158 2.28 0.00 41.60 2.17
911 913 2.045340 CAGGGGTTCCGCCGATTT 60.045 61.111 2.28 0.00 41.60 2.17
912 914 4.796495 GCAGGGGTTCCGCCGATT 62.796 66.667 2.28 0.00 41.60 3.34
918 920 2.361610 ATGCAAGCAGGGGTTCCG 60.362 61.111 0.00 0.00 38.33 4.30
919 921 0.685458 ATGATGCAAGCAGGGGTTCC 60.685 55.000 0.00 0.00 32.93 3.62
920 922 0.743097 GATGATGCAAGCAGGGGTTC 59.257 55.000 0.00 0.00 32.93 3.62
921 923 1.033746 CGATGATGCAAGCAGGGGTT 61.034 55.000 0.00 0.00 32.93 4.11
937 939 3.506455 ACCGATCGAGATATTTGGACGAT 59.494 43.478 18.66 0.00 44.35 3.73
940 942 6.622549 AGAATACCGATCGAGATATTTGGAC 58.377 40.000 18.66 6.01 0.00 4.02
941 943 6.835819 AGAATACCGATCGAGATATTTGGA 57.164 37.500 18.66 0.00 0.00 3.53
942 944 8.981724 TTTAGAATACCGATCGAGATATTTGG 57.018 34.615 18.66 0.00 0.00 3.28
943 945 9.841880 TCTTTAGAATACCGATCGAGATATTTG 57.158 33.333 18.66 0.00 0.00 2.32
976 978 3.120269 GCGTCAGTATACCGATCGAGATT 60.120 47.826 18.66 0.74 0.00 2.40
988 990 2.361119 GAGTGGTCATGGCGTCAGTATA 59.639 50.000 0.00 0.00 0.00 1.47
994 996 2.103042 GCAGAGTGGTCATGGCGTC 61.103 63.158 0.00 0.00 0.00 5.19
1000 1002 4.101448 GCGGGGCAGAGTGGTCAT 62.101 66.667 0.00 0.00 0.00 3.06
1155 1163 1.410882 GAATCACCTCGAGGAAGGGAG 59.589 57.143 37.69 18.07 41.04 4.30
1259 1268 7.282224 GGCAAACTCTGTCACCACATAATTATA 59.718 37.037 0.00 0.00 0.00 0.98
1260 1269 6.095440 GGCAAACTCTGTCACCACATAATTAT 59.905 38.462 0.00 0.00 0.00 1.28
1297 1306 2.041686 GGAGTCGCCGTCAGAGACT 61.042 63.158 0.00 0.00 46.61 3.24
1501 1510 9.975218 ACCCTTCAGTGTAGATGTAAATATTTT 57.025 29.630 5.91 0.00 0.00 1.82
1502 1511 9.975218 AACCCTTCAGTGTAGATGTAAATATTT 57.025 29.630 5.89 5.89 0.00 1.40
1505 1514 9.263446 ACTAACCCTTCAGTGTAGATGTAAATA 57.737 33.333 0.00 0.00 0.00 1.40
1506 1515 8.041323 CACTAACCCTTCAGTGTAGATGTAAAT 58.959 37.037 0.00 0.00 37.87 1.40
1507 1516 7.383687 CACTAACCCTTCAGTGTAGATGTAAA 58.616 38.462 0.00 0.00 37.87 2.01
1508 1517 6.070995 CCACTAACCCTTCAGTGTAGATGTAA 60.071 42.308 0.00 0.00 40.47 2.41
1509 1518 5.421056 CCACTAACCCTTCAGTGTAGATGTA 59.579 44.000 0.00 0.00 40.47 2.29
1510 1519 4.223032 CCACTAACCCTTCAGTGTAGATGT 59.777 45.833 0.00 0.00 40.47 3.06
1511 1520 4.223032 ACCACTAACCCTTCAGTGTAGATG 59.777 45.833 0.00 0.00 40.47 2.90
1512 1521 4.426704 ACCACTAACCCTTCAGTGTAGAT 58.573 43.478 0.00 0.00 40.47 1.98
1513 1522 3.853207 ACCACTAACCCTTCAGTGTAGA 58.147 45.455 0.00 0.00 40.47 2.59
1514 1523 4.202326 ACAACCACTAACCCTTCAGTGTAG 60.202 45.833 0.00 0.00 40.47 2.74
1515 1524 3.712733 ACAACCACTAACCCTTCAGTGTA 59.287 43.478 0.00 0.00 40.47 2.90
1516 1525 2.508300 ACAACCACTAACCCTTCAGTGT 59.492 45.455 0.00 0.00 40.47 3.55
1517 1526 3.208747 ACAACCACTAACCCTTCAGTG 57.791 47.619 0.00 0.00 41.51 3.66
1518 1527 3.201266 TCAACAACCACTAACCCTTCAGT 59.799 43.478 0.00 0.00 0.00 3.41
1563 1573 9.371136 CAAACAATAGTAGCATCTCAAGTTCTA 57.629 33.333 0.00 0.00 0.00 2.10
1571 1581 9.937175 GGTATTTTCAAACAATAGTAGCATCTC 57.063 33.333 0.00 0.00 0.00 2.75
1630 1642 5.359009 CCTTTTAGAGAATCATGCATGTGGT 59.641 40.000 25.43 12.30 37.82 4.16
1747 1760 4.016444 GGACTGAAATATTGCTGTCCCAA 58.984 43.478 29.79 0.00 43.35 4.12
1811 1824 7.558444 TGTAAACTGAGGTTCAAAATGGTAACT 59.442 33.333 0.00 0.00 34.14 2.24
1979 1998 5.583061 TGTTTACATAACCGCCTATGAACTG 59.417 40.000 8.49 0.00 34.07 3.16
2103 2124 2.238942 ACTGAACGAACATGCTGACA 57.761 45.000 0.00 0.00 0.00 3.58
2176 2197 5.368230 ACAAATAATCCCCACCTTTTGTGTT 59.632 36.000 0.00 0.00 43.85 3.32
2186 2207 3.096092 TCAGGCAACAAATAATCCCCAC 58.904 45.455 0.00 0.00 41.41 4.61
2208 2229 2.223745 ACCAATAACAACGTGGTGGTC 58.776 47.619 0.00 0.00 44.05 4.02
2217 2238 2.167662 CTGGGACCCACCAATAACAAC 58.832 52.381 9.95 0.00 40.68 3.32
2262 2283 2.088950 AGACCCGTGTAATTCGGTTG 57.911 50.000 3.67 0.00 45.63 3.77
2301 2322 3.294493 GCCCGCTCTGGTGCAAAA 61.294 61.111 0.00 0.00 34.94 2.44
2390 2411 4.889832 ATCTAGCAATGTAAACAGCAGC 57.110 40.909 0.00 0.00 0.00 5.25
2534 2555 1.606994 CCCTTCGTCATCCAACGTTGA 60.607 52.381 29.35 15.43 43.08 3.18
2718 2742 3.423058 AAGCCCTAGAATACTCACCCT 57.577 47.619 0.00 0.00 0.00 4.34
2721 2745 8.966069 AGAATTAAAAGCCCTAGAATACTCAC 57.034 34.615 0.00 0.00 0.00 3.51
2860 2884 7.265599 TCTCCATGTGTTCCCTTTAAGATAA 57.734 36.000 0.00 0.00 0.00 1.75
3326 3352 2.687914 GCTGCCCATACCTCCAAAAGAT 60.688 50.000 0.00 0.00 0.00 2.40
3474 3500 6.763610 CACAAATCTGTATAGAAACCTCCTCC 59.236 42.308 0.00 0.00 36.32 4.30
3541 3567 6.183360 TGTTCAATGAGCATGCTGAGAATAAG 60.183 38.462 28.27 9.49 0.00 1.73
3620 3646 9.726232 CAATCACATTTGTTATAATCACTCTGG 57.274 33.333 0.00 0.00 0.00 3.86
3696 3722 1.021968 GAACTTGGGAACGCTGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
3783 3809 1.474478 TGAGAACGTGGCAAAAGCAAA 59.526 42.857 0.00 0.00 0.00 3.68
4164 4191 2.036992 AGCAATTTTCGTGGATTGGCAA 59.963 40.909 0.68 0.68 34.60 4.52
4173 4200 1.666888 GCAGGTCCAGCAATTTTCGTG 60.667 52.381 0.49 0.00 0.00 4.35
4175 4202 0.883833 AGCAGGTCCAGCAATTTTCG 59.116 50.000 9.19 0.00 0.00 3.46
4263 4290 7.175104 AGTGCTTTCTCACCATAAATTAAGGA 58.825 34.615 0.84 0.00 37.68 3.36
4295 4322 5.124457 CACCTCTAGTACTACGTAAAAGCCA 59.876 44.000 0.00 0.00 0.00 4.75
4379 4409 9.466497 AGATTCCTATTTGTATTTTTCTGAGCA 57.534 29.630 0.00 0.00 0.00 4.26
4398 4428 4.038402 CACTTGTTCTGCCAAAAGATTCCT 59.962 41.667 0.00 0.00 0.00 3.36
4454 4484 3.263170 AGTTCTTGCCCAACCAAGTTTTT 59.737 39.130 2.31 0.00 42.16 1.94
4477 4507 0.035317 TCAGCGTGGCAGTTCTGATT 59.965 50.000 8.61 0.00 31.35 2.57
4712 4744 6.148645 TCAAACGAAGATAAGCAACTGCAATA 59.851 34.615 4.22 0.00 45.16 1.90
4715 4747 3.812609 TCAAACGAAGATAAGCAACTGCA 59.187 39.130 4.22 0.00 45.16 4.41
4756 4788 5.304101 TGCCAAACATGAGGTTTCAAGTAAT 59.696 36.000 0.00 0.00 46.61 1.89
4800 4832 0.599466 CGCGCCATCATCTCTGTGAT 60.599 55.000 0.00 0.00 39.34 3.06
4803 4835 2.107750 CCGCGCCATCATCTCTGT 59.892 61.111 0.00 0.00 0.00 3.41
4883 4915 6.973474 ACAGTAAGTTATCTGATACACGAAGC 59.027 38.462 15.17 0.00 35.84 3.86
5043 5075 6.707608 TCAGACAGTACATATCGTATACGGTT 59.292 38.462 24.18 14.71 40.29 4.44
5072 5104 9.045223 CAGTACAAAGCTTCTTGCACATATATA 57.955 33.333 0.00 0.00 45.94 0.86
5079 5111 2.033299 TGCAGTACAAAGCTTCTTGCAC 59.967 45.455 15.00 6.37 45.94 4.57
5109 5141 4.154918 GGGCAGATTTCAGAAACTGTAGTG 59.845 45.833 18.72 5.86 32.61 2.74
5114 5146 3.119245 CCATGGGCAGATTTCAGAAACTG 60.119 47.826 2.85 15.67 0.00 3.16
5155 5187 3.836365 TCTTCAACCATGCCATCGATA 57.164 42.857 0.00 0.00 0.00 2.92
5159 5191 4.883585 TCTATGTTCTTCAACCATGCCATC 59.116 41.667 0.00 0.00 0.00 3.51
5195 5227 3.243501 GCACTGCCACTTCAAAATCTTCA 60.244 43.478 0.00 0.00 0.00 3.02
5231 5263 7.288810 AGAAGAATGGAAGCAACAAACAATA 57.711 32.000 0.00 0.00 0.00 1.90
5348 5383 0.539669 AACCTTAGTGCACAAGGGCC 60.540 55.000 32.75 0.00 45.81 5.80
5379 5414 9.685828 CGACTTAATTCTTTGGTGGAAAAATAA 57.314 29.630 0.00 0.00 0.00 1.40
5380 5415 9.069082 TCGACTTAATTCTTTGGTGGAAAAATA 57.931 29.630 0.00 0.00 0.00 1.40
5381 5416 7.947282 TCGACTTAATTCTTTGGTGGAAAAAT 58.053 30.769 0.00 0.00 0.00 1.82
5382 5417 7.067737 ACTCGACTTAATTCTTTGGTGGAAAAA 59.932 33.333 0.00 0.00 0.00 1.94
5383 5418 6.544564 ACTCGACTTAATTCTTTGGTGGAAAA 59.455 34.615 0.00 0.00 0.00 2.29
5385 5420 5.468746 CACTCGACTTAATTCTTTGGTGGAA 59.531 40.000 0.00 0.00 0.00 3.53
5437 6580 5.588246 TGCACAAGTTCAAGAGTTGTCATTA 59.412 36.000 0.00 0.00 46.48 1.90
5475 6622 3.476552 TCAAGGTGCCAAGTCTAAACAG 58.523 45.455 0.00 0.00 0.00 3.16
5531 8105 6.932356 ATCGAGATGTTGACATTTGCTAAT 57.068 33.333 0.00 0.00 36.57 1.73
5580 8154 1.024271 GCAAGTGTGCAACTTCCAGA 58.976 50.000 10.19 0.00 46.60 3.86
5581 8155 3.557207 GCAAGTGTGCAACTTCCAG 57.443 52.632 10.19 3.53 46.60 3.86
5631 8205 7.787904 AGTTACCTCTATGTATGGGTATGACAA 59.212 37.037 0.00 0.00 34.77 3.18
5646 8220 2.436173 GCTCAGCCCAAGTTACCTCTAT 59.564 50.000 0.00 0.00 0.00 1.98
5690 8264 5.351740 GCCACTGAACTAAGAAGTCCATTAC 59.648 44.000 0.00 0.00 33.75 1.89
5691 8265 5.248477 AGCCACTGAACTAAGAAGTCCATTA 59.752 40.000 0.00 0.00 33.75 1.90
5723 8297 1.509644 TTTCACTTGCGGCTGCTCTG 61.510 55.000 20.27 10.89 43.34 3.35
5738 8312 1.892474 GCATTAGCACAACCCCTTTCA 59.108 47.619 0.00 0.00 41.58 2.69
5747 8321 3.347216 GAGGAAGAAGGCATTAGCACAA 58.653 45.455 0.00 0.00 44.61 3.33
5749 8323 2.293170 GGAGGAAGAAGGCATTAGCAC 58.707 52.381 0.00 0.00 44.61 4.40
5821 8400 5.759273 GGATGAGAAGATCACAGATCAAAGG 59.241 44.000 9.43 0.00 41.91 3.11
5867 8446 3.021695 ACAATGGATCATGAAGGCACTG 58.978 45.455 0.00 0.00 40.86 3.66
5870 8449 4.459390 CAAACAATGGATCATGAAGGCA 57.541 40.909 0.00 0.00 0.00 4.75
5884 8463 6.512297 GGTGTGAGTTAATTCACCAAACAAT 58.488 36.000 23.57 0.00 45.40 2.71
5886 8465 5.508200 GGTGTGAGTTAATTCACCAAACA 57.492 39.130 23.57 6.42 45.40 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.