Multiple sequence alignment - TraesCS1D01G089800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G089800 chr1D 100.000 2777 0 0 1 2777 75891522 75888746 0.000000e+00 5129
1 TraesCS1D01G089800 chr2B 91.370 2051 168 6 728 2773 654525083 654523037 0.000000e+00 2798
2 TraesCS1D01G089800 chr2B 87.874 2070 238 12 718 2777 78073455 78075521 0.000000e+00 2420
3 TraesCS1D01G089800 chr3B 90.684 2061 182 7 718 2773 714971474 714973529 0.000000e+00 2734
4 TraesCS1D01G089800 chr3B 87.661 389 42 6 243 629 650058780 650059164 5.460000e-122 448
5 TraesCS1D01G089800 chr4A 90.437 2060 186 11 718 2771 19451097 19453151 0.000000e+00 2702
6 TraesCS1D01G089800 chr4A 87.000 400 46 6 232 628 58835032 58835428 1.960000e-121 446
7 TraesCS1D01G089800 chr2A 90.227 2067 192 6 718 2775 90589081 90587016 0.000000e+00 2689
8 TraesCS1D01G089800 chr1B 89.217 2068 212 7 718 2775 679608426 679606360 0.000000e+00 2573
9 TraesCS1D01G089800 chr1B 92.017 238 9 4 1 231 119250759 119250525 2.670000e-85 326
10 TraesCS1D01G089800 chr1B 79.476 229 23 12 15 231 119578281 119578497 1.040000e-29 141
11 TraesCS1D01G089800 chr5B 87.784 2071 239 13 718 2777 611694401 611692334 0.000000e+00 2410
12 TraesCS1D01G089800 chr5B 89.790 1861 180 9 916 2772 402732358 402730504 0.000000e+00 2375
13 TraesCS1D01G089800 chr5B 87.918 389 43 4 242 629 491146251 491145866 3.260000e-124 455
14 TraesCS1D01G089800 chr7A 85.341 2067 285 13 718 2771 734910948 734913009 0.000000e+00 2122
15 TraesCS1D01G089800 chr7A 88.946 389 40 3 242 628 641743084 641743471 6.960000e-131 477
16 TraesCS1D01G089800 chr3D 89.744 390 33 5 242 629 590229122 590228738 2.490000e-135 492
17 TraesCS1D01G089800 chr3D 87.282 401 46 5 232 629 574065310 574065708 1.170000e-123 453
18 TraesCS1D01G089800 chr3D 87.887 388 41 6 242 627 590228730 590228347 4.220000e-123 451
19 TraesCS1D01G089800 chr2D 89.034 383 35 5 242 623 485599217 485598841 4.190000e-128 468
20 TraesCS1D01G089800 chr2D 88.101 395 41 6 237 629 500695129 500694739 5.420000e-127 464
21 TraesCS1D01G089800 chr1A 88.017 242 14 6 1 237 76540415 76540184 3.520000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G089800 chr1D 75888746 75891522 2776 True 5129.0 5129 100.0000 1 2777 1 chr1D.!!$R1 2776
1 TraesCS1D01G089800 chr2B 654523037 654525083 2046 True 2798.0 2798 91.3700 728 2773 1 chr2B.!!$R1 2045
2 TraesCS1D01G089800 chr2B 78073455 78075521 2066 False 2420.0 2420 87.8740 718 2777 1 chr2B.!!$F1 2059
3 TraesCS1D01G089800 chr3B 714971474 714973529 2055 False 2734.0 2734 90.6840 718 2773 1 chr3B.!!$F2 2055
4 TraesCS1D01G089800 chr4A 19451097 19453151 2054 False 2702.0 2702 90.4370 718 2771 1 chr4A.!!$F1 2053
5 TraesCS1D01G089800 chr2A 90587016 90589081 2065 True 2689.0 2689 90.2270 718 2775 1 chr2A.!!$R1 2057
6 TraesCS1D01G089800 chr1B 679606360 679608426 2066 True 2573.0 2573 89.2170 718 2775 1 chr1B.!!$R2 2057
7 TraesCS1D01G089800 chr5B 611692334 611694401 2067 True 2410.0 2410 87.7840 718 2777 1 chr5B.!!$R3 2059
8 TraesCS1D01G089800 chr5B 402730504 402732358 1854 True 2375.0 2375 89.7900 916 2772 1 chr5B.!!$R1 1856
9 TraesCS1D01G089800 chr7A 734910948 734913009 2061 False 2122.0 2122 85.3410 718 2771 1 chr7A.!!$F2 2053
10 TraesCS1D01G089800 chr3D 590228347 590229122 775 True 471.5 492 88.8155 242 629 2 chr3D.!!$R1 387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 946 0.034089 AGGTGGCATCTAGGGTTTGC 60.034 55.0 0.0 0.0 35.64 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2138 0.530744 CACCGCCTGCTCACTAGTAA 59.469 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.650409 AGATCAGCGTTCGTCCATC 57.350 52.632 0.00 0.00 0.00 3.51
19 20 1.107114 AGATCAGCGTTCGTCCATCT 58.893 50.000 0.00 0.00 0.00 2.90
20 21 2.298610 AGATCAGCGTTCGTCCATCTA 58.701 47.619 0.00 0.00 0.00 1.98
21 22 2.292016 AGATCAGCGTTCGTCCATCTAG 59.708 50.000 0.00 0.00 0.00 2.43
22 23 1.460504 TCAGCGTTCGTCCATCTAGT 58.539 50.000 0.00 0.00 0.00 2.57
23 24 1.400846 TCAGCGTTCGTCCATCTAGTC 59.599 52.381 0.00 0.00 0.00 2.59
24 25 0.739561 AGCGTTCGTCCATCTAGTCC 59.260 55.000 0.00 0.00 0.00 3.85
25 26 0.454600 GCGTTCGTCCATCTAGTCCA 59.545 55.000 0.00 0.00 0.00 4.02
26 27 1.067212 GCGTTCGTCCATCTAGTCCAT 59.933 52.381 0.00 0.00 0.00 3.41
27 28 2.292569 GCGTTCGTCCATCTAGTCCATA 59.707 50.000 0.00 0.00 0.00 2.74
28 29 3.852572 GCGTTCGTCCATCTAGTCCATAC 60.853 52.174 0.00 0.00 0.00 2.39
29 30 3.564644 CGTTCGTCCATCTAGTCCATACT 59.435 47.826 0.00 0.00 39.91 2.12
30 31 4.753610 CGTTCGTCCATCTAGTCCATACTA 59.246 45.833 0.00 0.00 37.15 1.82
31 32 5.333952 CGTTCGTCCATCTAGTCCATACTAC 60.334 48.000 0.00 0.00 37.15 2.73
32 33 5.563876 TCGTCCATCTAGTCCATACTACT 57.436 43.478 0.00 0.00 37.15 2.57
33 34 6.676990 TCGTCCATCTAGTCCATACTACTA 57.323 41.667 0.00 0.00 37.15 1.82
34 35 6.462500 TCGTCCATCTAGTCCATACTACTAC 58.538 44.000 0.00 0.00 37.15 2.73
35 36 5.642919 CGTCCATCTAGTCCATACTACTACC 59.357 48.000 0.00 0.00 37.15 3.18
36 37 5.945191 GTCCATCTAGTCCATACTACTACCC 59.055 48.000 0.00 0.00 37.15 3.69
37 38 4.942483 CCATCTAGTCCATACTACTACCCG 59.058 50.000 0.00 0.00 37.15 5.28
38 39 4.013267 TCTAGTCCATACTACTACCCGC 57.987 50.000 0.00 0.00 37.15 6.13
39 40 1.992538 AGTCCATACTACTACCCGCC 58.007 55.000 0.00 0.00 32.84 6.13
40 41 1.498145 AGTCCATACTACTACCCGCCT 59.502 52.381 0.00 0.00 32.84 5.52
41 42 1.612463 GTCCATACTACTACCCGCCTG 59.388 57.143 0.00 0.00 0.00 4.85
42 43 1.496001 TCCATACTACTACCCGCCTGA 59.504 52.381 0.00 0.00 0.00 3.86
43 44 2.109480 TCCATACTACTACCCGCCTGAT 59.891 50.000 0.00 0.00 0.00 2.90
44 45 2.492484 CCATACTACTACCCGCCTGATC 59.508 54.545 0.00 0.00 0.00 2.92
45 46 3.154710 CATACTACTACCCGCCTGATCA 58.845 50.000 0.00 0.00 0.00 2.92
46 47 2.383442 ACTACTACCCGCCTGATCAT 57.617 50.000 0.00 0.00 0.00 2.45
47 48 1.964223 ACTACTACCCGCCTGATCATG 59.036 52.381 0.00 0.00 0.00 3.07
48 49 0.679505 TACTACCCGCCTGATCATGC 59.320 55.000 12.50 12.50 0.00 4.06
49 50 1.337384 ACTACCCGCCTGATCATGCA 61.337 55.000 20.83 0.00 0.00 3.96
50 51 0.882042 CTACCCGCCTGATCATGCAC 60.882 60.000 20.83 0.00 0.00 4.57
51 52 2.324014 TACCCGCCTGATCATGCACC 62.324 60.000 20.83 0.00 0.00 5.01
52 53 2.191375 CCGCCTGATCATGCACCT 59.809 61.111 20.83 0.00 0.00 4.00
53 54 2.184830 CCGCCTGATCATGCACCTG 61.185 63.158 20.83 6.26 0.00 4.00
54 55 2.184830 CGCCTGATCATGCACCTGG 61.185 63.158 20.83 7.11 0.00 4.45
55 56 1.826921 GCCTGATCATGCACCTGGG 60.827 63.158 16.99 3.71 0.00 4.45
56 57 1.826921 CCTGATCATGCACCTGGGC 60.827 63.158 0.00 0.00 0.00 5.36
78 79 7.102847 GGCACCTAGGTAGATATGATCTTAC 57.897 44.000 15.80 0.00 40.76 2.34
79 80 6.097129 GGCACCTAGGTAGATATGATCTTACC 59.903 46.154 15.80 1.73 40.76 2.85
80 81 6.893005 GCACCTAGGTAGATATGATCTTACCT 59.107 42.308 15.80 15.66 41.70 3.08
81 82 8.053963 GCACCTAGGTAGATATGATCTTACCTA 58.946 40.741 15.80 16.00 40.54 3.08
82 83 9.621629 CACCTAGGTAGATATGATCTTACCTAG 57.378 40.741 24.46 24.46 46.69 3.02
83 84 9.354108 ACCTAGGTAGATATGATCTTACCTAGT 57.646 37.037 26.33 19.65 46.33 2.57
87 88 9.125255 AGGTAGATATGATCTTACCTAGTACCA 57.875 37.037 12.26 0.00 39.46 3.25
88 89 9.750783 GGTAGATATGATCTTACCTAGTACCAA 57.249 37.037 0.00 0.00 40.76 3.67
99 100 9.359653 TCTTACCTAGTACCAAGATATTACACC 57.640 37.037 0.00 0.00 0.00 4.16
100 101 6.645790 ACCTAGTACCAAGATATTACACCG 57.354 41.667 0.00 0.00 0.00 4.94
101 102 6.131961 ACCTAGTACCAAGATATTACACCGT 58.868 40.000 0.00 0.00 0.00 4.83
102 103 6.608808 ACCTAGTACCAAGATATTACACCGTT 59.391 38.462 0.00 0.00 0.00 4.44
103 104 6.921857 CCTAGTACCAAGATATTACACCGTTG 59.078 42.308 0.00 0.00 0.00 4.10
104 105 6.534475 AGTACCAAGATATTACACCGTTGA 57.466 37.500 0.00 0.00 0.00 3.18
105 106 6.335777 AGTACCAAGATATTACACCGTTGAC 58.664 40.000 0.00 0.00 0.00 3.18
106 107 5.416271 ACCAAGATATTACACCGTTGACT 57.584 39.130 0.00 0.00 0.00 3.41
107 108 6.534475 ACCAAGATATTACACCGTTGACTA 57.466 37.500 0.00 0.00 0.00 2.59
108 109 6.938507 ACCAAGATATTACACCGTTGACTAA 58.061 36.000 0.00 0.00 0.00 2.24
109 110 6.815142 ACCAAGATATTACACCGTTGACTAAC 59.185 38.462 0.00 0.00 0.00 2.34
110 111 6.257193 CCAAGATATTACACCGTTGACTAACC 59.743 42.308 0.00 0.00 33.12 2.85
111 112 6.534475 AGATATTACACCGTTGACTAACCA 57.466 37.500 0.00 0.00 33.12 3.67
112 113 6.938507 AGATATTACACCGTTGACTAACCAA 58.061 36.000 0.00 0.00 33.12 3.67
113 114 7.039882 AGATATTACACCGTTGACTAACCAAG 58.960 38.462 0.00 0.00 33.12 3.61
114 115 1.589803 ACACCGTTGACTAACCAAGC 58.410 50.000 0.00 0.00 33.12 4.01
115 116 1.134340 ACACCGTTGACTAACCAAGCA 60.134 47.619 0.00 0.00 33.12 3.91
116 117 1.944024 CACCGTTGACTAACCAAGCAA 59.056 47.619 0.00 0.00 33.12 3.91
117 118 1.944709 ACCGTTGACTAACCAAGCAAC 59.055 47.619 0.00 0.00 38.13 4.17
118 119 1.944024 CCGTTGACTAACCAAGCAACA 59.056 47.619 0.00 0.00 39.85 3.33
119 120 2.356382 CCGTTGACTAACCAAGCAACAA 59.644 45.455 0.00 0.00 39.85 2.83
120 121 3.548014 CCGTTGACTAACCAAGCAACAAG 60.548 47.826 0.00 0.00 39.85 3.16
121 122 3.372060 GTTGACTAACCAAGCAACAAGC 58.628 45.455 0.00 0.00 39.74 4.01
131 132 2.612200 GCAACAAGCGTGTACTGGA 58.388 52.632 5.50 0.00 36.80 3.86
132 133 0.512952 GCAACAAGCGTGTACTGGAG 59.487 55.000 5.50 0.00 36.80 3.86
133 134 1.872237 GCAACAAGCGTGTACTGGAGA 60.872 52.381 5.50 0.00 36.80 3.71
134 135 2.688507 CAACAAGCGTGTACTGGAGAT 58.311 47.619 5.50 0.00 36.80 2.75
135 136 2.370281 ACAAGCGTGTACTGGAGATG 57.630 50.000 2.53 0.00 35.72 2.90
136 137 1.002366 CAAGCGTGTACTGGAGATGC 58.998 55.000 0.00 0.00 33.46 3.91
137 138 0.898320 AAGCGTGTACTGGAGATGCT 59.102 50.000 0.00 0.00 45.34 3.79
138 139 0.898320 AGCGTGTACTGGAGATGCTT 59.102 50.000 0.00 0.00 40.73 3.91
139 140 2.100197 AGCGTGTACTGGAGATGCTTA 58.900 47.619 0.00 0.00 40.73 3.09
140 141 2.496070 AGCGTGTACTGGAGATGCTTAA 59.504 45.455 0.00 0.00 40.73 1.85
141 142 3.133003 AGCGTGTACTGGAGATGCTTAAT 59.867 43.478 0.00 0.00 40.73 1.40
142 143 3.491267 GCGTGTACTGGAGATGCTTAATC 59.509 47.826 0.00 0.00 35.29 1.75
144 145 5.352284 CGTGTACTGGAGATGCTTAATCTT 58.648 41.667 0.00 0.00 46.12 2.40
145 146 5.233050 CGTGTACTGGAGATGCTTAATCTTG 59.767 44.000 0.00 0.00 46.12 3.02
146 147 6.109359 GTGTACTGGAGATGCTTAATCTTGT 58.891 40.000 0.00 0.00 46.12 3.16
147 148 6.036517 GTGTACTGGAGATGCTTAATCTTGTG 59.963 42.308 0.00 0.00 46.12 3.33
148 149 3.944015 ACTGGAGATGCTTAATCTTGTGC 59.056 43.478 0.00 0.00 46.12 4.57
149 150 2.938451 TGGAGATGCTTAATCTTGTGCG 59.062 45.455 0.00 0.00 46.12 5.34
150 151 2.939103 GGAGATGCTTAATCTTGTGCGT 59.061 45.455 0.00 0.00 46.12 5.24
151 152 3.375299 GGAGATGCTTAATCTTGTGCGTT 59.625 43.478 0.00 0.00 46.12 4.84
152 153 4.142600 GGAGATGCTTAATCTTGTGCGTTT 60.143 41.667 0.00 0.00 46.12 3.60
153 154 5.376854 AGATGCTTAATCTTGTGCGTTTT 57.623 34.783 0.00 0.00 43.52 2.43
154 155 5.156355 AGATGCTTAATCTTGTGCGTTTTG 58.844 37.500 0.00 0.00 43.52 2.44
155 156 4.300189 TGCTTAATCTTGTGCGTTTTGT 57.700 36.364 0.00 0.00 0.00 2.83
156 157 4.286910 TGCTTAATCTTGTGCGTTTTGTC 58.713 39.130 0.00 0.00 0.00 3.18
157 158 3.668656 GCTTAATCTTGTGCGTTTTGTCC 59.331 43.478 0.00 0.00 0.00 4.02
158 159 4.556699 GCTTAATCTTGTGCGTTTTGTCCT 60.557 41.667 0.00 0.00 0.00 3.85
159 160 5.508200 TTAATCTTGTGCGTTTTGTCCTT 57.492 34.783 0.00 0.00 0.00 3.36
160 161 6.621316 TTAATCTTGTGCGTTTTGTCCTTA 57.379 33.333 0.00 0.00 0.00 2.69
161 162 3.955771 TCTTGTGCGTTTTGTCCTTAC 57.044 42.857 0.00 0.00 0.00 2.34
162 163 2.285756 TCTTGTGCGTTTTGTCCTTACG 59.714 45.455 0.00 0.00 38.26 3.18
163 164 1.654317 TGTGCGTTTTGTCCTTACGT 58.346 45.000 0.00 0.00 37.58 3.57
164 165 1.328069 TGTGCGTTTTGTCCTTACGTG 59.672 47.619 0.00 0.00 37.58 4.49
165 166 1.593933 GTGCGTTTTGTCCTTACGTGA 59.406 47.619 0.00 0.00 37.58 4.35
166 167 2.222445 GTGCGTTTTGTCCTTACGTGAT 59.778 45.455 0.00 0.00 37.58 3.06
167 168 2.222213 TGCGTTTTGTCCTTACGTGATG 59.778 45.455 0.00 0.00 37.58 3.07
168 169 2.834689 CGTTTTGTCCTTACGTGATGC 58.165 47.619 0.00 0.00 0.00 3.91
169 170 2.222213 CGTTTTGTCCTTACGTGATGCA 59.778 45.455 0.00 0.00 0.00 3.96
170 171 3.120338 CGTTTTGTCCTTACGTGATGCAT 60.120 43.478 0.00 0.00 0.00 3.96
171 172 4.403453 GTTTTGTCCTTACGTGATGCATC 58.597 43.478 20.14 20.14 0.00 3.91
172 173 3.326836 TTGTCCTTACGTGATGCATCA 57.673 42.857 25.42 25.42 0.00 3.07
173 174 3.326836 TGTCCTTACGTGATGCATCAA 57.673 42.857 30.24 13.22 38.75 2.57
174 175 3.669536 TGTCCTTACGTGATGCATCAAA 58.330 40.909 30.24 19.59 38.75 2.69
175 176 3.435327 TGTCCTTACGTGATGCATCAAAC 59.565 43.478 30.24 17.91 38.75 2.93
176 177 3.435327 GTCCTTACGTGATGCATCAAACA 59.565 43.478 30.24 15.11 38.75 2.83
177 178 3.435327 TCCTTACGTGATGCATCAAACAC 59.565 43.478 30.24 17.39 38.75 3.32
178 179 3.188254 CCTTACGTGATGCATCAAACACA 59.812 43.478 30.24 12.80 38.75 3.72
179 180 4.142622 CCTTACGTGATGCATCAAACACAT 60.143 41.667 30.24 10.36 38.75 3.21
180 181 3.476295 ACGTGATGCATCAAACACATC 57.524 42.857 30.24 15.07 38.75 3.06
181 182 2.813172 ACGTGATGCATCAAACACATCA 59.187 40.909 30.24 3.63 45.87 3.07
184 185 3.776340 TGATGCATCAAACACATCATGC 58.224 40.909 26.87 0.00 43.85 4.06
185 186 3.445805 TGATGCATCAAACACATCATGCT 59.554 39.130 26.87 0.00 43.85 3.79
186 187 4.641094 TGATGCATCAAACACATCATGCTA 59.359 37.500 26.87 0.00 43.85 3.49
187 188 5.300792 TGATGCATCAAACACATCATGCTAT 59.699 36.000 26.87 0.00 43.85 2.97
188 189 5.585820 TGCATCAAACACATCATGCTATT 57.414 34.783 4.52 0.00 41.89 1.73
189 190 5.344884 TGCATCAAACACATCATGCTATTG 58.655 37.500 4.52 0.00 41.89 1.90
190 191 5.105675 TGCATCAAACACATCATGCTATTGT 60.106 36.000 4.52 0.00 41.89 2.71
191 192 5.457799 GCATCAAACACATCATGCTATTGTC 59.542 40.000 0.00 0.00 38.89 3.18
192 193 6.557110 CATCAAACACATCATGCTATTGTCA 58.443 36.000 0.00 0.00 0.00 3.58
193 194 5.941733 TCAAACACATCATGCTATTGTCAC 58.058 37.500 0.00 0.00 0.00 3.67
194 195 5.706833 TCAAACACATCATGCTATTGTCACT 59.293 36.000 0.00 0.00 0.00 3.41
195 196 5.556355 AACACATCATGCTATTGTCACTG 57.444 39.130 0.00 0.00 0.00 3.66
196 197 4.835678 ACACATCATGCTATTGTCACTGA 58.164 39.130 0.00 0.00 0.00 3.41
197 198 5.434408 ACACATCATGCTATTGTCACTGAT 58.566 37.500 0.00 0.00 0.00 2.90
198 199 6.585416 ACACATCATGCTATTGTCACTGATA 58.415 36.000 0.00 0.00 0.00 2.15
199 200 7.222161 ACACATCATGCTATTGTCACTGATAT 58.778 34.615 0.00 0.00 0.00 1.63
200 201 7.718314 ACACATCATGCTATTGTCACTGATATT 59.282 33.333 0.00 0.00 0.00 1.28
201 202 8.565416 CACATCATGCTATTGTCACTGATATTT 58.435 33.333 0.00 0.00 0.00 1.40
202 203 9.783081 ACATCATGCTATTGTCACTGATATTTA 57.217 29.630 0.00 0.00 0.00 1.40
208 209 9.317936 TGCTATTGTCACTGATATTTAAGAGTG 57.682 33.333 0.00 0.00 37.72 3.51
209 210 8.279103 GCTATTGTCACTGATATTTAAGAGTGC 58.721 37.037 0.00 0.00 36.55 4.40
210 211 9.317936 CTATTGTCACTGATATTTAAGAGTGCA 57.682 33.333 0.00 0.00 36.55 4.57
211 212 7.977789 TTGTCACTGATATTTAAGAGTGCAA 57.022 32.000 0.00 0.00 36.55 4.08
212 213 7.977789 TGTCACTGATATTTAAGAGTGCAAA 57.022 32.000 0.00 0.00 36.55 3.68
213 214 8.389779 TGTCACTGATATTTAAGAGTGCAAAA 57.610 30.769 0.00 0.00 36.55 2.44
214 215 8.845227 TGTCACTGATATTTAAGAGTGCAAAAA 58.155 29.630 0.00 0.00 36.55 1.94
240 241 6.980051 AAGGAATTATACACTGAACGTTCC 57.020 37.500 24.78 5.91 35.31 3.62
261 262 2.119484 AAATCCGTTGGTGCTCCCGA 62.119 55.000 1.59 0.00 35.15 5.14
262 263 2.521958 AATCCGTTGGTGCTCCCGAG 62.522 60.000 1.59 0.00 35.15 4.63
334 335 7.525688 TTCAAACAAAAATTTGACGCATACA 57.474 28.000 12.54 0.00 45.84 2.29
375 376 3.303791 GCACGTCAAGTTTCGGAGAAAAT 60.304 43.478 0.00 0.00 45.90 1.82
380 381 4.448060 GTCAAGTTTCGGAGAAAATCGACT 59.552 41.667 6.75 0.00 45.90 4.18
441 444 7.895767 GTCTTGTGAAAAACATTTTTAACACCG 59.104 33.333 16.36 11.88 46.10 4.94
463 466 5.510323 CCGTATTTTATCTTTTTCACACGCC 59.490 40.000 0.00 0.00 0.00 5.68
499 502 9.698309 TTGTCTGTTTTTCATGAAACAACTTTA 57.302 25.926 27.39 18.22 45.73 1.85
510 513 8.959548 TCATGAAACAACTTTATGAGCATGTAT 58.040 29.630 0.00 0.00 33.18 2.29
527 530 8.412608 AGCATGTATAATATTGAGATGTACGC 57.587 34.615 0.00 0.00 0.00 4.42
539 542 3.068560 AGATGTACGCGCCAAGTTTTTA 58.931 40.909 5.73 0.00 0.00 1.52
546 549 4.303282 ACGCGCCAAGTTTTTATTTGAAT 58.697 34.783 5.73 0.00 0.00 2.57
599 602 3.428534 CACATTTTAAAAACCAGGAGCGC 59.571 43.478 4.44 0.00 0.00 5.92
600 603 3.068873 ACATTTTAAAAACCAGGAGCGCA 59.931 39.130 11.47 0.00 0.00 6.09
601 604 2.785713 TTTAAAAACCAGGAGCGCAC 57.214 45.000 11.47 1.97 0.00 5.34
619 622 1.541147 CACGCTCCCATGTGTCAAAAT 59.459 47.619 0.00 0.00 0.00 1.82
629 632 2.229792 TGTGTCAAAATGCCACTCTCC 58.770 47.619 0.00 0.00 0.00 3.71
630 633 1.541588 GTGTCAAAATGCCACTCTCCC 59.458 52.381 0.00 0.00 0.00 4.30
631 634 0.804989 GTCAAAATGCCACTCTCCCG 59.195 55.000 0.00 0.00 0.00 5.14
632 635 0.690192 TCAAAATGCCACTCTCCCGA 59.310 50.000 0.00 0.00 0.00 5.14
633 636 1.073125 TCAAAATGCCACTCTCCCGAA 59.927 47.619 0.00 0.00 0.00 4.30
636 639 1.827399 AATGCCACTCTCCCGAACGT 61.827 55.000 0.00 0.00 0.00 3.99
637 640 1.827399 ATGCCACTCTCCCGAACGTT 61.827 55.000 0.00 0.00 0.00 3.99
638 641 2.027625 GCCACTCTCCCGAACGTTG 61.028 63.158 5.00 0.00 0.00 4.10
639 642 2.027625 CCACTCTCCCGAACGTTGC 61.028 63.158 5.00 0.00 0.00 4.17
641 644 0.242825 CACTCTCCCGAACGTTGCTA 59.757 55.000 5.00 0.00 0.00 3.49
642 645 1.135083 CACTCTCCCGAACGTTGCTAT 60.135 52.381 5.00 0.00 0.00 2.97
643 646 2.098607 CACTCTCCCGAACGTTGCTATA 59.901 50.000 5.00 0.00 0.00 1.31
644 647 2.098770 ACTCTCCCGAACGTTGCTATAC 59.901 50.000 5.00 0.00 0.00 1.47
645 648 2.093890 TCTCCCGAACGTTGCTATACA 58.906 47.619 5.00 0.00 0.00 2.29
646 649 2.159338 TCTCCCGAACGTTGCTATACAC 60.159 50.000 5.00 0.00 0.00 2.90
647 650 1.545136 TCCCGAACGTTGCTATACACA 59.455 47.619 5.00 0.00 0.00 3.72
648 651 2.029200 TCCCGAACGTTGCTATACACAA 60.029 45.455 5.00 0.00 0.00 3.33
649 652 2.347452 CCCGAACGTTGCTATACACAAG 59.653 50.000 5.00 0.00 0.00 3.16
650 653 3.247442 CCGAACGTTGCTATACACAAGA 58.753 45.455 5.00 0.00 0.00 3.02
651 654 3.060363 CCGAACGTTGCTATACACAAGAC 59.940 47.826 5.00 0.00 0.00 3.01
652 655 3.671459 CGAACGTTGCTATACACAAGACA 59.329 43.478 5.00 0.00 0.00 3.41
653 656 4.432503 CGAACGTTGCTATACACAAGACAC 60.433 45.833 5.00 0.00 0.00 3.67
654 657 4.252971 ACGTTGCTATACACAAGACACT 57.747 40.909 0.00 0.00 0.00 3.55
655 658 5.381174 ACGTTGCTATACACAAGACACTA 57.619 39.130 0.00 0.00 0.00 2.74
656 659 5.962433 ACGTTGCTATACACAAGACACTAT 58.038 37.500 0.00 0.00 0.00 2.12
657 660 5.805486 ACGTTGCTATACACAAGACACTATG 59.195 40.000 0.00 0.00 0.00 2.23
658 661 5.805486 CGTTGCTATACACAAGACACTATGT 59.195 40.000 0.00 0.00 0.00 2.29
663 666 2.861763 CACAAGACACTATGTGCACG 57.138 50.000 13.13 0.00 40.32 5.34
664 667 2.403259 CACAAGACACTATGTGCACGA 58.597 47.619 13.13 1.26 40.32 4.35
665 668 2.995939 CACAAGACACTATGTGCACGAT 59.004 45.455 13.13 9.46 40.32 3.73
666 669 3.433274 CACAAGACACTATGTGCACGATT 59.567 43.478 13.13 1.99 40.32 3.34
667 670 4.065088 ACAAGACACTATGTGCACGATTT 58.935 39.130 13.13 0.00 36.98 2.17
668 671 5.120053 CACAAGACACTATGTGCACGATTTA 59.880 40.000 13.13 0.00 40.32 1.40
669 672 5.874810 ACAAGACACTATGTGCACGATTTAT 59.125 36.000 13.13 1.83 36.98 1.40
670 673 5.973651 AGACACTATGTGCACGATTTATG 57.026 39.130 13.13 8.10 36.98 1.90
671 674 4.811024 AGACACTATGTGCACGATTTATGG 59.189 41.667 13.13 4.15 36.98 2.74
672 675 4.765273 ACACTATGTGCACGATTTATGGA 58.235 39.130 13.13 0.00 36.98 3.41
673 676 4.570772 ACACTATGTGCACGATTTATGGAC 59.429 41.667 13.13 0.00 36.98 4.02
674 677 3.802139 ACTATGTGCACGATTTATGGACG 59.198 43.478 13.13 0.00 40.97 4.79
675 678 2.371910 TGTGCACGATTTATGGACGA 57.628 45.000 13.13 0.00 40.97 4.20
676 679 2.689646 TGTGCACGATTTATGGACGAA 58.310 42.857 13.13 0.00 40.97 3.85
677 680 2.670905 TGTGCACGATTTATGGACGAAG 59.329 45.455 13.13 0.00 40.97 3.79
678 681 1.663643 TGCACGATTTATGGACGAAGC 59.336 47.619 0.00 0.00 34.52 3.86
679 682 1.933853 GCACGATTTATGGACGAAGCT 59.066 47.619 0.00 0.00 0.00 3.74
680 683 2.285834 GCACGATTTATGGACGAAGCTG 60.286 50.000 0.00 0.00 0.00 4.24
681 684 2.930040 CACGATTTATGGACGAAGCTGT 59.070 45.455 0.00 0.00 0.00 4.40
682 685 3.370978 CACGATTTATGGACGAAGCTGTT 59.629 43.478 0.00 0.00 0.00 3.16
683 686 4.565166 CACGATTTATGGACGAAGCTGTTA 59.435 41.667 0.00 0.00 0.00 2.41
684 687 5.062934 CACGATTTATGGACGAAGCTGTTAA 59.937 40.000 0.00 0.00 0.00 2.01
685 688 5.815740 ACGATTTATGGACGAAGCTGTTAAT 59.184 36.000 0.00 0.00 0.00 1.40
686 689 6.982141 ACGATTTATGGACGAAGCTGTTAATA 59.018 34.615 0.00 0.00 0.00 0.98
687 690 7.169308 ACGATTTATGGACGAAGCTGTTAATAG 59.831 37.037 0.00 0.00 0.00 1.73
688 691 7.359264 CGATTTATGGACGAAGCTGTTAATAGG 60.359 40.741 1.09 0.00 0.00 2.57
689 692 3.536956 TGGACGAAGCTGTTAATAGGG 57.463 47.619 1.09 0.00 0.00 3.53
690 693 2.210961 GGACGAAGCTGTTAATAGGGC 58.789 52.381 1.09 0.00 0.00 5.19
691 694 2.210961 GACGAAGCTGTTAATAGGGCC 58.789 52.381 0.00 0.00 0.00 5.80
692 695 1.217882 CGAAGCTGTTAATAGGGCCG 58.782 55.000 0.00 0.00 0.00 6.13
693 696 1.472728 CGAAGCTGTTAATAGGGCCGT 60.473 52.381 2.24 2.24 0.00 5.68
694 697 2.640184 GAAGCTGTTAATAGGGCCGTT 58.360 47.619 1.81 0.00 0.00 4.44
695 698 2.038387 AGCTGTTAATAGGGCCGTTG 57.962 50.000 1.81 0.00 0.00 4.10
696 699 1.021968 GCTGTTAATAGGGCCGTTGG 58.978 55.000 1.81 0.00 0.00 3.77
697 700 1.675552 CTGTTAATAGGGCCGTTGGG 58.324 55.000 1.81 0.00 0.00 4.12
698 701 0.993470 TGTTAATAGGGCCGTTGGGT 59.007 50.000 1.81 0.00 34.97 4.51
699 702 1.065272 TGTTAATAGGGCCGTTGGGTC 60.065 52.381 1.81 0.00 37.12 4.46
700 703 1.065272 GTTAATAGGGCCGTTGGGTCA 60.065 52.381 1.81 0.00 40.80 4.02
701 704 1.287217 TAATAGGGCCGTTGGGTCAA 58.713 50.000 1.81 0.00 40.80 3.18
702 705 0.034477 AATAGGGCCGTTGGGTCAAG 60.034 55.000 1.81 0.00 40.80 3.02
703 706 1.205460 ATAGGGCCGTTGGGTCAAGT 61.205 55.000 1.81 0.00 40.80 3.16
704 707 1.420532 TAGGGCCGTTGGGTCAAGTT 61.421 55.000 1.81 0.00 40.80 2.66
705 708 2.561037 GGGCCGTTGGGTCAAGTTG 61.561 63.158 0.00 0.00 40.80 3.16
706 709 2.335011 GCCGTTGGGTCAAGTTGC 59.665 61.111 0.00 0.00 34.97 4.17
707 710 3.039134 CCGTTGGGTCAAGTTGCC 58.961 61.111 0.00 2.90 0.00 4.52
708 711 1.528309 CCGTTGGGTCAAGTTGCCT 60.528 57.895 13.69 0.00 0.00 4.75
709 712 0.250553 CCGTTGGGTCAAGTTGCCTA 60.251 55.000 13.69 7.14 0.00 3.93
710 713 1.600023 CGTTGGGTCAAGTTGCCTAA 58.400 50.000 13.69 11.76 0.00 2.69
711 714 1.265905 CGTTGGGTCAAGTTGCCTAAC 59.734 52.381 23.34 23.34 41.11 2.34
712 715 1.611977 GTTGGGTCAAGTTGCCTAACC 59.388 52.381 23.01 15.07 39.40 2.85
713 716 0.847373 TGGGTCAAGTTGCCTAACCA 59.153 50.000 12.18 4.99 37.52 3.67
714 717 1.202879 TGGGTCAAGTTGCCTAACCAG 60.203 52.381 12.18 0.00 37.52 4.00
715 718 0.881796 GGTCAAGTTGCCTAACCAGC 59.118 55.000 6.59 0.00 37.52 4.85
716 719 0.517316 GTCAAGTTGCCTAACCAGCG 59.483 55.000 0.00 0.00 37.52 5.18
720 723 3.646715 TTGCCTAACCAGCGGCCT 61.647 61.111 0.00 0.00 45.71 5.19
785 791 2.123251 ATCCCGATCTCCCACGCT 60.123 61.111 0.00 0.00 0.00 5.07
828 835 2.436115 GCACCGTACCCAAGCTCC 60.436 66.667 0.00 0.00 0.00 4.70
929 945 1.408822 GGAGGTGGCATCTAGGGTTTG 60.409 57.143 0.00 0.00 0.00 2.93
930 946 0.034089 AGGTGGCATCTAGGGTTTGC 60.034 55.000 0.00 0.00 35.64 3.68
967 984 3.074412 GCGTCAGAGGAATCAAGGAAAA 58.926 45.455 0.00 0.00 0.00 2.29
1099 1118 1.489560 GGTGGGTAGGGTTCTGCACT 61.490 60.000 0.00 0.00 29.93 4.40
1393 1413 3.993865 TACCCGCCATGGCCTGAGA 62.994 63.158 30.79 9.96 37.98 3.27
1773 1796 0.699231 GGGGAGGAGGAATGGGATGT 60.699 60.000 0.00 0.00 0.00 3.06
1822 1848 3.261897 AGGAGGTAACATCACCACTGAAG 59.738 47.826 0.00 0.00 41.40 3.02
1945 1971 0.468400 GAGGCCGGGAGAGAGTGTAT 60.468 60.000 2.18 0.00 0.00 2.29
1990 2016 1.408702 GGCCGCACCAATACATCAAAT 59.591 47.619 0.00 0.00 38.86 2.32
2042 2068 7.211897 TGGAATAAGAAGAGATCCATGGAAA 57.788 36.000 20.67 0.00 35.33 3.13
2241 2267 2.827322 CCATTTGGTGAGGATTGAAGCA 59.173 45.455 0.00 0.00 0.00 3.91
2278 2304 7.554476 TCTTCTTATCAGAGACGAAGATTGAGA 59.446 37.037 9.37 0.00 36.22 3.27
2294 2320 2.762745 TGAGAGAAACAAGGTAACGGC 58.237 47.619 0.00 0.00 46.39 5.68
2354 2380 2.499205 CGGTAATGGGCTGAGCGA 59.501 61.111 0.00 0.00 36.22 4.93
2507 2533 3.864789 AGCAAAGAGGAGTGAAAGGAA 57.135 42.857 0.00 0.00 0.00 3.36
2518 2544 2.039613 AGTGAAAGGAAAGAGAGCTGGG 59.960 50.000 0.00 0.00 0.00 4.45
2652 2678 2.741612 CAAATGCAAGGCTTTCGTGAA 58.258 42.857 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.107114 AGATGGACGAACGCTGATCT 58.893 50.000 0.00 0.00 0.00 2.75
1 2 2.033550 ACTAGATGGACGAACGCTGATC 59.966 50.000 0.00 0.00 0.00 2.92
2 3 2.025155 ACTAGATGGACGAACGCTGAT 58.975 47.619 0.00 0.00 0.00 2.90
3 4 1.400846 GACTAGATGGACGAACGCTGA 59.599 52.381 0.00 0.00 0.00 4.26
4 5 1.534175 GGACTAGATGGACGAACGCTG 60.534 57.143 0.00 0.00 0.00 5.18
5 6 0.739561 GGACTAGATGGACGAACGCT 59.260 55.000 0.00 0.00 0.00 5.07
6 7 0.454600 TGGACTAGATGGACGAACGC 59.545 55.000 0.00 0.00 0.00 4.84
7 8 3.564644 AGTATGGACTAGATGGACGAACG 59.435 47.826 0.00 0.00 32.65 3.95
8 9 5.764192 AGTAGTATGGACTAGATGGACGAAC 59.236 44.000 0.00 0.00 38.88 3.95
9 10 5.938279 AGTAGTATGGACTAGATGGACGAA 58.062 41.667 0.00 0.00 38.88 3.85
10 11 5.563876 AGTAGTATGGACTAGATGGACGA 57.436 43.478 0.00 0.00 38.88 4.20
11 12 5.642919 GGTAGTAGTATGGACTAGATGGACG 59.357 48.000 0.00 0.00 38.88 4.79
12 13 5.945191 GGGTAGTAGTATGGACTAGATGGAC 59.055 48.000 0.00 0.00 38.88 4.02
13 14 5.280368 CGGGTAGTAGTATGGACTAGATGGA 60.280 48.000 0.00 0.00 38.88 3.41
14 15 4.942483 CGGGTAGTAGTATGGACTAGATGG 59.058 50.000 0.00 0.00 38.88 3.51
15 16 4.395542 GCGGGTAGTAGTATGGACTAGATG 59.604 50.000 0.00 0.00 38.88 2.90
16 17 4.567327 GGCGGGTAGTAGTATGGACTAGAT 60.567 50.000 0.00 0.00 38.88 1.98
17 18 3.244700 GGCGGGTAGTAGTATGGACTAGA 60.245 52.174 0.00 0.00 38.88 2.43
18 19 3.080319 GGCGGGTAGTAGTATGGACTAG 58.920 54.545 0.00 0.00 38.88 2.57
19 20 2.713167 AGGCGGGTAGTAGTATGGACTA 59.287 50.000 0.00 0.00 37.10 2.59
20 21 1.498145 AGGCGGGTAGTAGTATGGACT 59.502 52.381 0.00 0.00 39.92 3.85
21 22 1.612463 CAGGCGGGTAGTAGTATGGAC 59.388 57.143 0.00 0.00 0.00 4.02
22 23 1.496001 TCAGGCGGGTAGTAGTATGGA 59.504 52.381 0.00 0.00 0.00 3.41
23 24 1.991121 TCAGGCGGGTAGTAGTATGG 58.009 55.000 0.00 0.00 0.00 2.74
24 25 3.154710 TGATCAGGCGGGTAGTAGTATG 58.845 50.000 0.00 0.00 0.00 2.39
25 26 3.520691 TGATCAGGCGGGTAGTAGTAT 57.479 47.619 0.00 0.00 0.00 2.12
26 27 3.154710 CATGATCAGGCGGGTAGTAGTA 58.845 50.000 0.09 0.00 0.00 1.82
27 28 1.964223 CATGATCAGGCGGGTAGTAGT 59.036 52.381 0.09 0.00 0.00 2.73
28 29 1.337260 GCATGATCAGGCGGGTAGTAG 60.337 57.143 17.52 0.00 0.00 2.57
29 30 0.679505 GCATGATCAGGCGGGTAGTA 59.320 55.000 17.52 0.00 0.00 1.82
30 31 1.337384 TGCATGATCAGGCGGGTAGT 61.337 55.000 25.58 0.00 41.64 2.73
31 32 0.882042 GTGCATGATCAGGCGGGTAG 60.882 60.000 25.58 0.00 41.64 3.18
32 33 1.146041 GTGCATGATCAGGCGGGTA 59.854 57.895 25.58 6.93 41.64 3.69
33 34 2.124570 GTGCATGATCAGGCGGGT 60.125 61.111 25.58 0.00 41.64 5.28
34 35 2.903855 GGTGCATGATCAGGCGGG 60.904 66.667 25.58 2.67 41.64 6.13
35 36 2.184830 CAGGTGCATGATCAGGCGG 61.185 63.158 25.58 12.35 41.64 6.13
36 37 2.184830 CCAGGTGCATGATCAGGCG 61.185 63.158 25.58 12.26 41.64 5.52
37 38 1.826921 CCCAGGTGCATGATCAGGC 60.827 63.158 24.81 24.81 38.80 4.85
38 39 1.826921 GCCCAGGTGCATGATCAGG 60.827 63.158 2.22 2.22 0.00 3.86
39 40 1.077285 TGCCCAGGTGCATGATCAG 60.077 57.895 0.09 0.00 36.04 2.90
40 41 1.378911 GTGCCCAGGTGCATGATCA 60.379 57.895 0.00 0.00 44.30 2.92
41 42 2.123428 GGTGCCCAGGTGCATGATC 61.123 63.158 0.00 0.00 44.30 2.92
42 43 1.281199 TAGGTGCCCAGGTGCATGAT 61.281 55.000 0.00 0.00 44.30 2.45
43 44 1.913951 CTAGGTGCCCAGGTGCATGA 61.914 60.000 0.00 0.00 44.30 3.07
44 45 1.452651 CTAGGTGCCCAGGTGCATG 60.453 63.158 5.96 0.00 44.30 4.06
45 46 2.683465 CCTAGGTGCCCAGGTGCAT 61.683 63.158 0.00 0.00 44.30 3.96
46 47 2.757145 TACCTAGGTGCCCAGGTGCA 62.757 60.000 25.33 0.00 44.93 4.57
47 48 1.972660 CTACCTAGGTGCCCAGGTGC 61.973 65.000 25.33 0.00 44.93 5.01
48 49 0.325296 TCTACCTAGGTGCCCAGGTG 60.325 60.000 25.33 8.27 44.93 4.00
49 50 0.642710 ATCTACCTAGGTGCCCAGGT 59.357 55.000 25.33 12.69 46.88 4.00
50 51 2.696526 TATCTACCTAGGTGCCCAGG 57.303 55.000 25.33 7.46 37.97 4.45
51 52 3.779444 TCATATCTACCTAGGTGCCCAG 58.221 50.000 25.33 13.73 0.00 4.45
52 53 3.915346 TCATATCTACCTAGGTGCCCA 57.085 47.619 25.33 7.59 0.00 5.36
53 54 4.615513 AGATCATATCTACCTAGGTGCCC 58.384 47.826 25.33 3.42 38.00 5.36
54 55 6.097129 GGTAAGATCATATCTACCTAGGTGCC 59.903 46.154 25.33 1.52 39.08 5.01
55 56 6.893005 AGGTAAGATCATATCTACCTAGGTGC 59.107 42.308 25.33 2.59 39.46 5.01
56 57 9.621629 CTAGGTAAGATCATATCTACCTAGGTG 57.378 40.741 25.33 14.14 45.50 4.00
61 62 9.125255 TGGTACTAGGTAAGATCATATCTACCT 57.875 37.037 9.13 15.84 41.70 3.08
62 63 9.750783 TTGGTACTAGGTAAGATCATATCTACC 57.249 37.037 0.00 0.00 39.08 3.18
73 74 9.359653 GGTGTAATATCTTGGTACTAGGTAAGA 57.640 37.037 0.00 0.00 34.09 2.10
74 75 8.295288 CGGTGTAATATCTTGGTACTAGGTAAG 58.705 40.741 0.00 0.00 0.00 2.34
75 76 7.779798 ACGGTGTAATATCTTGGTACTAGGTAA 59.220 37.037 0.00 0.00 0.00 2.85
76 77 7.290061 ACGGTGTAATATCTTGGTACTAGGTA 58.710 38.462 0.00 0.00 0.00 3.08
77 78 6.131961 ACGGTGTAATATCTTGGTACTAGGT 58.868 40.000 0.00 0.00 0.00 3.08
78 79 6.645790 ACGGTGTAATATCTTGGTACTAGG 57.354 41.667 0.00 0.00 0.00 3.02
79 80 7.646922 GTCAACGGTGTAATATCTTGGTACTAG 59.353 40.741 0.00 0.00 0.00 2.57
80 81 7.340232 AGTCAACGGTGTAATATCTTGGTACTA 59.660 37.037 0.00 0.00 0.00 1.82
81 82 6.154021 AGTCAACGGTGTAATATCTTGGTACT 59.846 38.462 0.00 0.00 0.00 2.73
82 83 6.335777 AGTCAACGGTGTAATATCTTGGTAC 58.664 40.000 0.00 0.00 0.00 3.34
83 84 6.534475 AGTCAACGGTGTAATATCTTGGTA 57.466 37.500 0.00 0.00 0.00 3.25
84 85 5.416271 AGTCAACGGTGTAATATCTTGGT 57.584 39.130 0.00 0.00 0.00 3.67
85 86 6.257193 GGTTAGTCAACGGTGTAATATCTTGG 59.743 42.308 0.00 0.00 35.34 3.61
86 87 6.814644 TGGTTAGTCAACGGTGTAATATCTTG 59.185 38.462 0.00 0.00 35.34 3.02
87 88 6.938507 TGGTTAGTCAACGGTGTAATATCTT 58.061 36.000 0.00 0.00 35.34 2.40
88 89 6.534475 TGGTTAGTCAACGGTGTAATATCT 57.466 37.500 0.00 0.00 35.34 1.98
89 90 6.238022 GCTTGGTTAGTCAACGGTGTAATATC 60.238 42.308 0.00 0.00 35.34 1.63
90 91 5.583457 GCTTGGTTAGTCAACGGTGTAATAT 59.417 40.000 0.00 0.00 35.34 1.28
91 92 4.931002 GCTTGGTTAGTCAACGGTGTAATA 59.069 41.667 0.00 0.00 35.34 0.98
92 93 3.749609 GCTTGGTTAGTCAACGGTGTAAT 59.250 43.478 0.00 0.00 35.34 1.89
93 94 3.132925 GCTTGGTTAGTCAACGGTGTAA 58.867 45.455 0.00 0.00 35.34 2.41
94 95 2.102757 TGCTTGGTTAGTCAACGGTGTA 59.897 45.455 0.00 0.00 35.34 2.90
95 96 1.134340 TGCTTGGTTAGTCAACGGTGT 60.134 47.619 0.00 0.00 35.34 4.16
96 97 1.588674 TGCTTGGTTAGTCAACGGTG 58.411 50.000 0.00 0.00 35.34 4.94
97 98 1.944709 GTTGCTTGGTTAGTCAACGGT 59.055 47.619 0.00 0.00 35.34 4.83
98 99 1.944024 TGTTGCTTGGTTAGTCAACGG 59.056 47.619 0.00 0.00 40.58 4.44
99 100 3.617669 CTTGTTGCTTGGTTAGTCAACG 58.382 45.455 0.00 0.00 40.58 4.10
100 101 3.372060 GCTTGTTGCTTGGTTAGTCAAC 58.628 45.455 0.00 0.00 39.36 3.18
101 102 2.032799 CGCTTGTTGCTTGGTTAGTCAA 59.967 45.455 0.00 0.00 40.11 3.18
102 103 1.601903 CGCTTGTTGCTTGGTTAGTCA 59.398 47.619 0.00 0.00 40.11 3.41
103 104 1.602377 ACGCTTGTTGCTTGGTTAGTC 59.398 47.619 0.00 0.00 40.11 2.59
104 105 1.333619 CACGCTTGTTGCTTGGTTAGT 59.666 47.619 0.00 0.00 37.29 2.24
105 106 1.333619 ACACGCTTGTTGCTTGGTTAG 59.666 47.619 0.00 0.00 44.08 2.34
106 107 1.384525 ACACGCTTGTTGCTTGGTTA 58.615 45.000 0.00 0.00 44.08 2.85
107 108 1.064952 GTACACGCTTGTTGCTTGGTT 59.935 47.619 0.00 0.00 44.08 3.67
108 109 0.661020 GTACACGCTTGTTGCTTGGT 59.339 50.000 0.00 0.00 44.08 3.67
109 110 0.944386 AGTACACGCTTGTTGCTTGG 59.056 50.000 0.00 0.00 44.08 3.61
110 111 1.334059 CCAGTACACGCTTGTTGCTTG 60.334 52.381 0.00 0.00 45.12 4.01
111 112 0.944386 CCAGTACACGCTTGTTGCTT 59.056 50.000 0.00 0.00 40.11 3.91
112 113 0.105964 TCCAGTACACGCTTGTTGCT 59.894 50.000 0.00 0.00 40.11 3.91
113 114 0.512952 CTCCAGTACACGCTTGTTGC 59.487 55.000 0.00 0.00 37.15 4.17
114 115 2.148916 TCTCCAGTACACGCTTGTTG 57.851 50.000 0.00 0.00 37.15 3.33
115 116 2.688507 CATCTCCAGTACACGCTTGTT 58.311 47.619 0.00 0.00 37.15 2.83
116 117 1.673033 GCATCTCCAGTACACGCTTGT 60.673 52.381 0.05 0.05 40.02 3.16
117 118 1.002366 GCATCTCCAGTACACGCTTG 58.998 55.000 0.00 0.00 0.00 4.01
118 119 0.898320 AGCATCTCCAGTACACGCTT 59.102 50.000 0.00 0.00 0.00 4.68
119 120 0.898320 AAGCATCTCCAGTACACGCT 59.102 50.000 0.00 0.00 0.00 5.07
120 121 2.579207 TAAGCATCTCCAGTACACGC 57.421 50.000 0.00 0.00 0.00 5.34
121 122 4.938080 AGATTAAGCATCTCCAGTACACG 58.062 43.478 0.00 0.00 37.79 4.49
122 123 6.036517 CACAAGATTAAGCATCTCCAGTACAC 59.963 42.308 0.00 0.00 41.93 2.90
123 124 6.108687 CACAAGATTAAGCATCTCCAGTACA 58.891 40.000 0.00 0.00 41.93 2.90
124 125 5.007136 GCACAAGATTAAGCATCTCCAGTAC 59.993 44.000 0.00 0.00 41.93 2.73
125 126 5.118990 GCACAAGATTAAGCATCTCCAGTA 58.881 41.667 0.00 0.00 41.93 2.74
126 127 3.944015 GCACAAGATTAAGCATCTCCAGT 59.056 43.478 0.00 0.00 41.93 4.00
127 128 3.002042 CGCACAAGATTAAGCATCTCCAG 59.998 47.826 0.00 0.00 41.93 3.86
128 129 2.938451 CGCACAAGATTAAGCATCTCCA 59.062 45.455 0.00 0.00 41.93 3.86
129 130 2.939103 ACGCACAAGATTAAGCATCTCC 59.061 45.455 0.00 0.00 41.93 3.71
130 131 4.606457 AACGCACAAGATTAAGCATCTC 57.394 40.909 0.00 0.00 41.93 2.75
131 132 5.156355 CAAAACGCACAAGATTAAGCATCT 58.844 37.500 0.00 0.00 45.03 2.90
132 133 4.917415 ACAAAACGCACAAGATTAAGCATC 59.083 37.500 0.00 0.00 0.00 3.91
133 134 4.870363 ACAAAACGCACAAGATTAAGCAT 58.130 34.783 0.00 0.00 0.00 3.79
134 135 4.286910 GACAAAACGCACAAGATTAAGCA 58.713 39.130 0.00 0.00 0.00 3.91
135 136 3.668656 GGACAAAACGCACAAGATTAAGC 59.331 43.478 0.00 0.00 0.00 3.09
136 137 5.108385 AGGACAAAACGCACAAGATTAAG 57.892 39.130 0.00 0.00 0.00 1.85
137 138 5.508200 AAGGACAAAACGCACAAGATTAA 57.492 34.783 0.00 0.00 0.00 1.40
138 139 5.333492 CGTAAGGACAAAACGCACAAGATTA 60.333 40.000 0.00 0.00 0.00 1.75
139 140 4.553938 CGTAAGGACAAAACGCACAAGATT 60.554 41.667 0.00 0.00 0.00 2.40
140 141 3.059188 CGTAAGGACAAAACGCACAAGAT 60.059 43.478 0.00 0.00 0.00 2.40
141 142 2.285756 CGTAAGGACAAAACGCACAAGA 59.714 45.455 0.00 0.00 0.00 3.02
142 143 2.031191 ACGTAAGGACAAAACGCACAAG 59.969 45.455 0.00 0.00 46.39 3.16
143 144 2.008329 ACGTAAGGACAAAACGCACAA 58.992 42.857 0.00 0.00 46.39 3.33
144 145 1.328069 CACGTAAGGACAAAACGCACA 59.672 47.619 0.00 0.00 46.39 4.57
145 146 1.593933 TCACGTAAGGACAAAACGCAC 59.406 47.619 0.00 0.00 46.39 5.34
146 147 1.937278 TCACGTAAGGACAAAACGCA 58.063 45.000 0.00 0.00 46.39 5.24
147 148 2.834689 CATCACGTAAGGACAAAACGC 58.165 47.619 0.00 0.00 46.39 4.84
148 149 2.222213 TGCATCACGTAAGGACAAAACG 59.778 45.455 0.00 0.00 46.39 3.60
149 150 3.889196 TGCATCACGTAAGGACAAAAC 57.111 42.857 0.00 0.00 46.39 2.43
150 151 4.068599 TGATGCATCACGTAAGGACAAAA 58.931 39.130 25.42 0.00 46.39 2.44
151 152 3.669536 TGATGCATCACGTAAGGACAAA 58.330 40.909 25.42 0.00 46.39 2.83
152 153 3.326836 TGATGCATCACGTAAGGACAA 57.673 42.857 25.42 0.00 46.39 3.18
153 154 3.326836 TTGATGCATCACGTAAGGACA 57.673 42.857 28.72 8.36 46.39 4.02
154 155 3.435327 TGTTTGATGCATCACGTAAGGAC 59.565 43.478 28.72 16.93 46.39 3.85
155 156 3.435327 GTGTTTGATGCATCACGTAAGGA 59.565 43.478 28.72 9.90 46.39 3.36
156 157 3.188254 TGTGTTTGATGCATCACGTAAGG 59.812 43.478 28.72 0.00 46.39 2.69
157 158 5.023920 GATGTGTTTGATGCATCACGTAAG 58.976 41.667 28.72 0.00 38.92 2.34
158 159 4.453819 TGATGTGTTTGATGCATCACGTAA 59.546 37.500 28.72 17.62 42.51 3.18
159 160 3.999663 TGATGTGTTTGATGCATCACGTA 59.000 39.130 28.72 12.25 42.51 3.57
160 161 2.813172 TGATGTGTTTGATGCATCACGT 59.187 40.909 28.72 18.44 42.51 4.49
161 162 3.474693 TGATGTGTTTGATGCATCACG 57.525 42.857 28.72 0.00 42.51 4.35
164 165 4.041740 AGCATGATGTGTTTGATGCATC 57.958 40.909 20.14 20.14 43.04 3.91
165 166 5.784578 ATAGCATGATGTGTTTGATGCAT 57.215 34.783 0.00 0.00 43.04 3.96
166 167 5.105675 ACAATAGCATGATGTGTTTGATGCA 60.106 36.000 0.00 0.00 43.04 3.96
167 168 5.345702 ACAATAGCATGATGTGTTTGATGC 58.654 37.500 0.00 0.00 41.29 3.91
168 169 6.471198 GTGACAATAGCATGATGTGTTTGATG 59.529 38.462 0.00 0.00 0.00 3.07
169 170 6.376299 AGTGACAATAGCATGATGTGTTTGAT 59.624 34.615 0.00 0.00 0.00 2.57
170 171 5.706833 AGTGACAATAGCATGATGTGTTTGA 59.293 36.000 0.00 0.00 0.00 2.69
171 172 5.798434 CAGTGACAATAGCATGATGTGTTTG 59.202 40.000 0.00 0.00 0.00 2.93
172 173 5.706833 TCAGTGACAATAGCATGATGTGTTT 59.293 36.000 0.00 0.00 0.00 2.83
173 174 5.247862 TCAGTGACAATAGCATGATGTGTT 58.752 37.500 0.00 0.00 0.00 3.32
174 175 4.835678 TCAGTGACAATAGCATGATGTGT 58.164 39.130 0.00 0.00 0.00 3.72
175 176 7.668525 ATATCAGTGACAATAGCATGATGTG 57.331 36.000 0.00 0.00 0.00 3.21
176 177 8.687292 AAATATCAGTGACAATAGCATGATGT 57.313 30.769 0.00 0.00 0.00 3.06
182 183 9.317936 CACTCTTAAATATCAGTGACAATAGCA 57.682 33.333 0.00 0.00 38.90 3.49
183 184 8.279103 GCACTCTTAAATATCAGTGACAATAGC 58.721 37.037 0.00 0.00 38.90 2.97
184 185 9.317936 TGCACTCTTAAATATCAGTGACAATAG 57.682 33.333 0.00 0.00 38.90 1.73
185 186 9.665719 TTGCACTCTTAAATATCAGTGACAATA 57.334 29.630 0.00 0.00 38.90 1.90
186 187 8.565896 TTGCACTCTTAAATATCAGTGACAAT 57.434 30.769 0.00 0.00 38.90 2.71
187 188 7.977789 TTGCACTCTTAAATATCAGTGACAA 57.022 32.000 0.00 3.64 38.90 3.18
188 189 7.977789 TTTGCACTCTTAAATATCAGTGACA 57.022 32.000 0.00 0.00 38.90 3.58
214 215 8.294577 GGAACGTTCAGTGTATAATTCCTTTTT 58.705 33.333 28.24 0.00 33.14 1.94
215 216 7.813645 GGAACGTTCAGTGTATAATTCCTTTT 58.186 34.615 28.24 0.00 33.14 2.27
216 217 7.373778 GGAACGTTCAGTGTATAATTCCTTT 57.626 36.000 28.24 0.00 33.14 3.11
217 218 6.980051 GGAACGTTCAGTGTATAATTCCTT 57.020 37.500 28.24 0.00 33.14 3.36
236 237 0.109919 GCACCAACGGATTTCGGAAC 60.110 55.000 0.00 0.00 44.45 3.62
237 238 0.250553 AGCACCAACGGATTTCGGAA 60.251 50.000 0.00 0.00 44.45 4.30
238 239 0.672401 GAGCACCAACGGATTTCGGA 60.672 55.000 0.00 0.00 44.45 4.55
239 240 1.644786 GGAGCACCAACGGATTTCGG 61.645 60.000 0.00 0.00 38.54 4.30
240 241 1.644786 GGGAGCACCAACGGATTTCG 61.645 60.000 1.58 0.00 41.52 3.46
315 316 5.794945 CGAGATGTATGCGTCAAATTTTTGT 59.205 36.000 5.77 0.00 39.18 2.83
316 317 6.020984 TCGAGATGTATGCGTCAAATTTTTG 58.979 36.000 5.77 0.00 39.48 2.44
334 335 4.681483 CGTGCACACATATAATGTCGAGAT 59.319 41.667 18.64 0.00 42.70 2.75
441 444 6.858993 TGTGGCGTGTGAAAAAGATAAAATAC 59.141 34.615 0.00 0.00 0.00 1.89
448 451 1.002900 CGTGTGGCGTGTGAAAAAGAT 60.003 47.619 0.00 0.00 35.54 2.40
463 466 5.623335 TGAAAAACAGACAACTTACGTGTG 58.377 37.500 0.00 0.00 34.04 3.82
468 471 8.682128 TGTTTCATGAAAAACAGACAACTTAC 57.318 30.769 22.07 6.35 42.58 2.34
472 475 7.581011 AGTTGTTTCATGAAAAACAGACAAC 57.419 32.000 28.24 28.24 46.56 3.32
478 481 8.816144 GCTCATAAAGTTGTTTCATGAAAAACA 58.184 29.630 28.21 20.93 44.98 2.83
510 513 4.245845 TGGCGCGTACATCTCAATATTA 57.754 40.909 8.43 0.00 0.00 0.98
516 519 0.037697 AACTTGGCGCGTACATCTCA 60.038 50.000 8.43 0.00 0.00 3.27
599 602 0.950836 TTTTGACACATGGGAGCGTG 59.049 50.000 0.00 0.00 39.10 5.34
600 603 1.541147 CATTTTGACACATGGGAGCGT 59.459 47.619 0.00 0.00 0.00 5.07
601 604 1.733389 GCATTTTGACACATGGGAGCG 60.733 52.381 0.00 0.00 0.00 5.03
613 616 0.690192 TCGGGAGAGTGGCATTTTGA 59.310 50.000 0.00 0.00 0.00 2.69
619 622 2.504274 AACGTTCGGGAGAGTGGCA 61.504 57.895 0.00 0.00 41.75 4.92
629 632 3.060363 GTCTTGTGTATAGCAACGTTCGG 59.940 47.826 0.00 0.00 0.00 4.30
630 633 3.671459 TGTCTTGTGTATAGCAACGTTCG 59.329 43.478 0.00 0.00 0.00 3.95
631 634 4.684703 AGTGTCTTGTGTATAGCAACGTTC 59.315 41.667 0.00 0.00 0.00 3.95
632 635 4.628074 AGTGTCTTGTGTATAGCAACGTT 58.372 39.130 0.00 0.00 0.00 3.99
633 636 4.252971 AGTGTCTTGTGTATAGCAACGT 57.747 40.909 0.00 0.00 0.00 3.99
636 639 5.580691 GCACATAGTGTCTTGTGTATAGCAA 59.419 40.000 5.11 0.00 44.01 3.91
637 640 5.109210 GCACATAGTGTCTTGTGTATAGCA 58.891 41.667 5.11 0.00 44.01 3.49
638 641 5.005779 GTGCACATAGTGTCTTGTGTATAGC 59.994 44.000 13.17 0.00 44.01 2.97
639 642 5.230097 CGTGCACATAGTGTCTTGTGTATAG 59.770 44.000 18.64 0.00 44.01 1.31
641 644 3.926527 CGTGCACATAGTGTCTTGTGTAT 59.073 43.478 18.64 0.00 44.01 2.29
642 645 3.004944 TCGTGCACATAGTGTCTTGTGTA 59.995 43.478 18.64 0.00 44.01 2.90
643 646 2.135139 CGTGCACATAGTGTCTTGTGT 58.865 47.619 18.64 0.00 44.01 3.72
644 647 2.403259 TCGTGCACATAGTGTCTTGTG 58.597 47.619 18.64 0.00 44.75 3.33
645 648 2.812358 TCGTGCACATAGTGTCTTGT 57.188 45.000 18.64 0.00 35.75 3.16
646 649 4.668576 AAATCGTGCACATAGTGTCTTG 57.331 40.909 18.64 0.00 35.75 3.02
647 650 5.294306 CCATAAATCGTGCACATAGTGTCTT 59.706 40.000 18.64 2.94 35.75 3.01
648 651 4.811024 CCATAAATCGTGCACATAGTGTCT 59.189 41.667 18.64 0.00 35.75 3.41
649 652 4.808895 TCCATAAATCGTGCACATAGTGTC 59.191 41.667 18.64 0.00 35.75 3.67
650 653 4.570772 GTCCATAAATCGTGCACATAGTGT 59.429 41.667 18.64 0.00 35.75 3.55
651 654 4.318050 CGTCCATAAATCGTGCACATAGTG 60.318 45.833 18.64 7.25 36.51 2.74
652 655 3.802139 CGTCCATAAATCGTGCACATAGT 59.198 43.478 18.64 0.00 0.00 2.12
653 656 4.048504 TCGTCCATAAATCGTGCACATAG 58.951 43.478 18.64 0.04 0.00 2.23
654 657 4.048241 TCGTCCATAAATCGTGCACATA 57.952 40.909 18.64 4.27 0.00 2.29
655 658 2.899976 TCGTCCATAAATCGTGCACAT 58.100 42.857 18.64 6.80 0.00 3.21
656 659 2.371910 TCGTCCATAAATCGTGCACA 57.628 45.000 18.64 4.45 0.00 4.57
657 660 2.536928 GCTTCGTCCATAAATCGTGCAC 60.537 50.000 6.82 6.82 0.00 4.57
658 661 1.663643 GCTTCGTCCATAAATCGTGCA 59.336 47.619 0.00 0.00 0.00 4.57
659 662 1.933853 AGCTTCGTCCATAAATCGTGC 59.066 47.619 0.00 0.00 0.00 5.34
660 663 2.930040 ACAGCTTCGTCCATAAATCGTG 59.070 45.455 0.00 0.00 0.00 4.35
661 664 3.247006 ACAGCTTCGTCCATAAATCGT 57.753 42.857 0.00 0.00 0.00 3.73
662 665 5.712217 TTAACAGCTTCGTCCATAAATCG 57.288 39.130 0.00 0.00 0.00 3.34
663 666 7.095187 CCCTATTAACAGCTTCGTCCATAAATC 60.095 40.741 0.00 0.00 0.00 2.17
664 667 6.710744 CCCTATTAACAGCTTCGTCCATAAAT 59.289 38.462 0.00 0.00 0.00 1.40
665 668 6.053005 CCCTATTAACAGCTTCGTCCATAAA 58.947 40.000 0.00 0.00 0.00 1.40
666 669 5.607477 CCCTATTAACAGCTTCGTCCATAA 58.393 41.667 0.00 0.00 0.00 1.90
667 670 4.502604 GCCCTATTAACAGCTTCGTCCATA 60.503 45.833 0.00 0.00 0.00 2.74
668 671 3.744530 GCCCTATTAACAGCTTCGTCCAT 60.745 47.826 0.00 0.00 0.00 3.41
669 672 2.419574 GCCCTATTAACAGCTTCGTCCA 60.420 50.000 0.00 0.00 0.00 4.02
670 673 2.210961 GCCCTATTAACAGCTTCGTCC 58.789 52.381 0.00 0.00 0.00 4.79
671 674 2.210961 GGCCCTATTAACAGCTTCGTC 58.789 52.381 0.00 0.00 0.00 4.20
672 675 1.472728 CGGCCCTATTAACAGCTTCGT 60.473 52.381 0.00 0.00 0.00 3.85
673 676 1.217882 CGGCCCTATTAACAGCTTCG 58.782 55.000 0.00 0.00 0.00 3.79
674 677 2.327200 ACGGCCCTATTAACAGCTTC 57.673 50.000 0.00 0.00 0.00 3.86
675 678 2.365582 CAACGGCCCTATTAACAGCTT 58.634 47.619 0.00 0.00 0.00 3.74
676 679 1.408266 CCAACGGCCCTATTAACAGCT 60.408 52.381 0.00 0.00 0.00 4.24
677 680 1.021968 CCAACGGCCCTATTAACAGC 58.978 55.000 0.00 0.00 0.00 4.40
678 681 1.064979 ACCCAACGGCCCTATTAACAG 60.065 52.381 0.00 0.00 0.00 3.16
679 682 0.993470 ACCCAACGGCCCTATTAACA 59.007 50.000 0.00 0.00 0.00 2.41
680 683 1.065272 TGACCCAACGGCCCTATTAAC 60.065 52.381 0.00 0.00 0.00 2.01
681 684 1.287217 TGACCCAACGGCCCTATTAA 58.713 50.000 0.00 0.00 0.00 1.40
682 685 1.210967 CTTGACCCAACGGCCCTATTA 59.789 52.381 0.00 0.00 0.00 0.98
683 686 0.034477 CTTGACCCAACGGCCCTATT 60.034 55.000 0.00 0.00 0.00 1.73
684 687 1.205460 ACTTGACCCAACGGCCCTAT 61.205 55.000 0.00 0.00 0.00 2.57
685 688 1.420532 AACTTGACCCAACGGCCCTA 61.421 55.000 0.00 0.00 0.00 3.53
686 689 2.763645 AACTTGACCCAACGGCCCT 61.764 57.895 0.00 0.00 0.00 5.19
687 690 2.203437 AACTTGACCCAACGGCCC 60.203 61.111 0.00 0.00 0.00 5.80
688 691 3.039134 CAACTTGACCCAACGGCC 58.961 61.111 0.00 0.00 0.00 6.13
689 692 2.335011 GCAACTTGACCCAACGGC 59.665 61.111 0.00 0.00 0.00 5.68
690 693 3.039134 GGCAACTTGACCCAACGG 58.961 61.111 0.00 0.00 0.00 4.44
706 709 1.745489 GTTCAGGCCGCTGGTTAGG 60.745 63.158 0.00 0.00 0.00 2.69
707 710 1.745489 GGTTCAGGCCGCTGGTTAG 60.745 63.158 0.00 0.00 0.00 2.34
708 711 2.349755 GGTTCAGGCCGCTGGTTA 59.650 61.111 0.00 0.00 0.00 2.85
716 719 1.450025 CCTAGAAAACGGTTCAGGCC 58.550 55.000 0.00 0.00 0.00 5.19
720 723 5.058490 CACTAAACCCTAGAAAACGGTTCA 58.942 41.667 0.00 0.00 38.96 3.18
828 835 4.637489 CAGAGGAGGCGCCGATCG 62.637 72.222 23.20 8.51 43.43 3.69
847 854 2.685017 ATCACCCCGAGAGCAGCA 60.685 61.111 0.00 0.00 0.00 4.41
929 945 2.821366 CCATGTCGCACCTCCTGC 60.821 66.667 0.00 0.00 43.21 4.85
930 946 2.821366 GCCATGTCGCACCTCCTG 60.821 66.667 0.00 0.00 0.00 3.86
967 984 0.832135 TGCTCCACTTTCTCCCTCGT 60.832 55.000 0.00 0.00 0.00 4.18
1099 1118 9.817809 GATAGAGTTTACATGGATGAACTTACA 57.182 33.333 0.00 0.00 0.00 2.41
1393 1413 1.358787 TCCCAACATCCCTGCAATTCT 59.641 47.619 0.00 0.00 0.00 2.40
1773 1796 5.482175 CCCTTCTCTACTTCCTCTTCTTCAA 59.518 44.000 0.00 0.00 0.00 2.69
1822 1848 4.526970 TCCTGACCATTCCTTGCTTATTC 58.473 43.478 0.00 0.00 0.00 1.75
1945 1971 1.753078 CCCCATCTCCACTCGACGA 60.753 63.158 0.00 0.00 0.00 4.20
1990 2016 3.071167 CCTGATCCAAGATCATCAGCTGA 59.929 47.826 20.79 20.79 43.27 4.26
2042 2068 2.236146 TGGATGTACTTGGTTCATCGCT 59.764 45.455 9.81 0.00 39.89 4.93
2112 2138 0.530744 CACCGCCTGCTCACTAGTAA 59.469 55.000 0.00 0.00 0.00 2.24
2241 2267 5.590818 TCTGATAAGAAGACTAAGGTGGGT 58.409 41.667 0.00 0.00 0.00 4.51
2278 2304 4.222145 TCTCATAGCCGTTACCTTGTTTCT 59.778 41.667 0.00 0.00 0.00 2.52
2294 2320 5.702670 TCAAAACCAAGTCTTGCTCTCATAG 59.297 40.000 7.09 0.00 0.00 2.23
2338 2364 0.815615 CCTTCGCTCAGCCCATTACC 60.816 60.000 0.00 0.00 0.00 2.85
2507 2533 3.864789 TCAAAAGTTCCCAGCTCTCTT 57.135 42.857 0.00 0.00 0.00 2.85
2518 2544 4.095334 ACACCGTAACCACTTCAAAAGTTC 59.905 41.667 0.00 0.00 40.46 3.01
2551 2577 1.703411 CCACCACACAACCAAGGAAT 58.297 50.000 0.00 0.00 0.00 3.01
2652 2678 3.118884 GGAACTTGCATTCATCAATGGCT 60.119 43.478 2.65 0.00 40.03 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.