Multiple sequence alignment - TraesCS1D01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G089400 chr1D 100.000 6477 0 0 1 6477 75661116 75654640 0.000000e+00 11961.0
1 TraesCS1D01G089400 chr1B 95.532 5573 180 35 937 6477 119103836 119098301 0.000000e+00 8848.0
2 TraesCS1D01G089400 chr1B 87.067 549 19 16 426 939 119104389 119103858 2.030000e-159 573.0
3 TraesCS1D01G089400 chr1B 91.667 48 3 1 5834 5880 119098722 119098769 1.510000e-06 65.8
4 TraesCS1D01G089400 chr1A 95.907 2883 89 16 1153 4017 76491894 76489023 0.000000e+00 4643.0
5 TraesCS1D01G089400 chr1A 96.188 1889 56 9 4022 5895 76487677 76485790 0.000000e+00 3075.0
6 TraesCS1D01G089400 chr1A 86.195 594 46 10 5885 6477 76485662 76485104 1.540000e-170 610.0
7 TraesCS1D01G089400 chr1A 94.286 385 12 6 452 829 76493259 76492878 1.210000e-161 580.0
8 TraesCS1D01G089400 chr1A 95.431 197 3 1 937 1127 76492147 76491951 6.310000e-80 309.0
9 TraesCS1D01G089400 chr1A 97.872 47 0 1 1435 1481 76491952 76491907 5.380000e-11 80.5
10 TraesCS1D01G089400 chr2B 88.333 180 17 2 5896 6072 780869857 780870035 5.090000e-51 213.0
11 TraesCS1D01G089400 chr5D 88.000 175 19 2 5885 6059 538668889 538669061 8.510000e-49 206.0
12 TraesCS1D01G089400 chr5B 87.222 180 19 3 5885 6062 338490431 338490254 1.100000e-47 202.0
13 TraesCS1D01G089400 chr3A 84.153 183 25 3 5893 6072 717909240 717909421 2.400000e-39 174.0
14 TraesCS1D01G089400 chr3D 83.333 198 20 8 5885 6072 13926058 13926252 3.110000e-38 171.0
15 TraesCS1D01G089400 chr3D 82.632 190 28 5 5885 6072 68432266 68432080 5.200000e-36 163.0
16 TraesCS1D01G089400 chr2A 81.863 204 32 5 5882 6085 690794791 690794989 4.020000e-37 167.0
17 TraesCS1D01G089400 chr3B 87.879 66 8 0 5813 5878 177915803 177915738 1.940000e-10 78.7
18 TraesCS1D01G089400 chr7D 93.750 48 2 1 5826 5872 227402400 227402353 3.240000e-08 71.3
19 TraesCS1D01G089400 chr7B 89.583 48 4 1 5826 5872 199124570 199124523 7.010000e-05 60.2
20 TraesCS1D01G089400 chr6B 97.222 36 0 1 5838 5872 658649175 658649210 7.010000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G089400 chr1D 75654640 75661116 6476 True 11961.000000 11961 100.000000 1 6477 1 chr1D.!!$R1 6476
1 TraesCS1D01G089400 chr1B 119098301 119104389 6088 True 4710.500000 8848 91.299500 426 6477 2 chr1B.!!$R1 6051
2 TraesCS1D01G089400 chr1A 76485104 76493259 8155 True 1549.583333 4643 94.313167 452 6477 6 chr1A.!!$R1 6025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.107643 TGGAGGCAACAACATCGTCA 59.892 50.000 0.00 0.00 41.41 4.35 F
354 355 0.984230 TTTGGTAGCCCAGAGACCTG 59.016 55.000 0.00 0.00 43.15 4.00 F
891 1509 1.032114 GCTGCGGCTAGTTGGGATTT 61.032 55.000 11.21 0.00 35.22 2.17 F
896 1514 2.017049 CGGCTAGTTGGGATTTCCTTG 58.983 52.381 0.00 0.00 36.20 3.61 F
976 1618 2.041620 CTCTCCCACTTCATTCCCCAAA 59.958 50.000 0.00 0.00 0.00 3.28 F
1557 2253 3.005367 ACGACCATAGCCCAAAAGTTTTG 59.995 43.478 19.48 19.48 0.00 2.44 F
3039 3741 0.402504 TTGCACCTGGTAACCGGATT 59.597 50.000 9.46 0.67 29.82 3.01 F
3327 4029 2.738587 TGCTAAACCAGTTTGTCCCA 57.261 45.000 6.03 0.00 34.23 4.37 F
4862 6921 1.219664 CCCAATGTGCAGCCAATGG 59.780 57.895 9.82 9.82 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1971 0.950836 TCACATTTGCACCCAGTTCG 59.049 50.000 0.00 0.0 0.00 3.95 R
1284 1975 1.001068 TGCATTCACATTTGCACCCAG 59.999 47.619 0.00 0.0 43.54 4.45 R
1904 2601 1.448540 GTCCCAGCGTGTGATCCTG 60.449 63.158 0.00 0.0 0.00 3.86 R
2079 2776 2.942376 TGTTATGAATGGGTTAGCTGCG 59.058 45.455 0.00 0.0 0.00 5.18 R
2268 2965 4.600012 ATGAAGAACGAAATAGCAACCG 57.400 40.909 0.00 0.0 0.00 4.44 R
3263 3965 0.530744 GGATGTGTGAGGTGACGCTA 59.469 55.000 0.00 0.0 0.00 4.26 R
4216 6271 1.073763 AGTATGACCTGGCAGCAACAA 59.926 47.619 9.56 0.0 0.00 2.83 R
5054 7113 1.002868 CTGGAAGTGCCTCAGGTGG 60.003 63.158 0.00 0.0 37.63 4.61 R
6421 8636 1.112315 CACTCCCTCTCATCCCCTCG 61.112 65.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.173382 GCAGCGCGAACGATTTGT 59.827 55.556 12.10 0.00 43.93 2.83
27 28 1.859135 GCAGCGCGAACGATTTGTC 60.859 57.895 12.10 0.00 43.93 3.18
28 29 1.575132 CAGCGCGAACGATTTGTCG 60.575 57.895 12.10 0.00 43.93 4.35
29 30 2.932542 GCGCGAACGATTTGTCGC 60.933 61.111 12.10 7.93 43.93 5.19
30 31 2.468096 CGCGAACGATTTGTCGCA 59.532 55.556 17.02 0.00 42.96 5.10
31 32 1.853192 CGCGAACGATTTGTCGCAC 60.853 57.895 17.02 0.00 42.96 5.34
32 33 1.203065 GCGAACGATTTGTCGCACA 59.797 52.632 12.71 0.00 42.62 4.57
33 34 0.785708 GCGAACGATTTGTCGCACAG 60.786 55.000 12.71 0.00 42.62 3.66
34 35 0.506932 CGAACGATTTGTCGCACAGT 59.493 50.000 0.00 0.00 36.44 3.55
35 36 1.718361 CGAACGATTTGTCGCACAGTG 60.718 52.381 0.00 0.00 36.44 3.66
36 37 1.525197 GAACGATTTGTCGCACAGTGA 59.475 47.619 4.15 0.00 36.44 3.41
37 38 1.577468 ACGATTTGTCGCACAGTGAA 58.423 45.000 4.15 0.00 36.44 3.18
38 39 2.143122 ACGATTTGTCGCACAGTGAAT 58.857 42.857 4.15 0.00 36.44 2.57
39 40 2.157668 ACGATTTGTCGCACAGTGAATC 59.842 45.455 4.15 3.41 36.44 2.52
40 41 2.762472 GATTTGTCGCACAGTGAATCG 58.238 47.619 4.15 0.00 0.00 3.34
41 42 0.865111 TTTGTCGCACAGTGAATCGG 59.135 50.000 4.15 0.00 0.00 4.18
42 43 0.948623 TTGTCGCACAGTGAATCGGG 60.949 55.000 4.15 0.00 0.00 5.14
43 44 2.434185 TCGCACAGTGAATCGGGC 60.434 61.111 4.15 0.00 0.00 6.13
44 45 2.741985 CGCACAGTGAATCGGGCA 60.742 61.111 4.15 0.00 0.00 5.36
45 46 2.870372 GCACAGTGAATCGGGCAC 59.130 61.111 4.15 0.00 36.53 5.01
46 47 3.027170 GCACAGTGAATCGGGCACG 62.027 63.158 0.00 0.00 41.04 5.34
56 57 4.531708 CGGGCACGAACAATTGTG 57.468 55.556 12.82 2.87 44.60 3.33
68 69 4.661125 GAACAATTGTGCGATATGCTTGA 58.339 39.130 12.82 0.00 46.63 3.02
69 70 4.906065 ACAATTGTGCGATATGCTTGAT 57.094 36.364 11.07 0.00 46.63 2.57
70 71 6.375945 AACAATTGTGCGATATGCTTGATA 57.624 33.333 12.82 0.00 46.63 2.15
71 72 5.751680 ACAATTGTGCGATATGCTTGATAC 58.248 37.500 11.07 0.00 46.63 2.24
72 73 4.652175 ATTGTGCGATATGCTTGATACG 57.348 40.909 0.00 0.00 46.63 3.06
73 74 1.792367 TGTGCGATATGCTTGATACGC 59.208 47.619 0.00 0.00 46.63 4.42
74 75 2.061773 GTGCGATATGCTTGATACGCT 58.938 47.619 0.00 0.00 46.63 5.07
75 76 2.061028 TGCGATATGCTTGATACGCTG 58.939 47.619 0.00 0.00 46.63 5.18
76 77 2.288152 TGCGATATGCTTGATACGCTGA 60.288 45.455 0.00 0.00 46.63 4.26
77 78 2.926200 GCGATATGCTTGATACGCTGAT 59.074 45.455 0.00 0.00 42.19 2.90
78 79 3.241900 GCGATATGCTTGATACGCTGATG 60.242 47.826 0.00 0.00 42.19 3.07
79 80 4.168760 CGATATGCTTGATACGCTGATGA 58.831 43.478 0.00 0.00 0.00 2.92
80 81 4.264849 CGATATGCTTGATACGCTGATGAG 59.735 45.833 0.00 0.00 0.00 2.90
81 82 2.967599 TGCTTGATACGCTGATGAGT 57.032 45.000 0.00 0.00 0.00 3.41
82 83 2.543641 TGCTTGATACGCTGATGAGTG 58.456 47.619 0.00 0.00 35.66 3.51
83 84 1.260033 GCTTGATACGCTGATGAGTGC 59.740 52.381 0.00 0.00 32.44 4.40
89 90 4.898002 GCTGATGAGTGCGAGACA 57.102 55.556 0.00 0.00 0.00 3.41
90 91 2.663358 GCTGATGAGTGCGAGACAG 58.337 57.895 0.00 0.00 0.00 3.51
91 92 0.805322 GCTGATGAGTGCGAGACAGG 60.805 60.000 0.00 0.00 0.00 4.00
92 93 0.813821 CTGATGAGTGCGAGACAGGA 59.186 55.000 0.00 0.00 0.00 3.86
93 94 0.528017 TGATGAGTGCGAGACAGGAC 59.472 55.000 0.00 0.00 0.00 3.85
94 95 0.528017 GATGAGTGCGAGACAGGACA 59.472 55.000 0.00 0.00 34.76 4.02
95 96 0.969149 ATGAGTGCGAGACAGGACAA 59.031 50.000 0.00 0.00 34.76 3.18
96 97 0.750249 TGAGTGCGAGACAGGACAAA 59.250 50.000 0.00 0.00 34.76 2.83
97 98 1.344438 TGAGTGCGAGACAGGACAAAT 59.656 47.619 0.00 0.00 34.76 2.32
98 99 2.224281 TGAGTGCGAGACAGGACAAATT 60.224 45.455 0.00 0.00 34.76 1.82
99 100 2.146342 AGTGCGAGACAGGACAAATTG 58.854 47.619 0.00 0.00 34.76 2.32
100 101 2.143122 GTGCGAGACAGGACAAATTGA 58.857 47.619 0.00 0.00 32.46 2.57
101 102 2.096218 GTGCGAGACAGGACAAATTGAC 60.096 50.000 0.00 0.00 32.46 3.18
102 103 1.126846 GCGAGACAGGACAAATTGACG 59.873 52.381 0.00 0.00 0.00 4.35
103 104 2.672714 CGAGACAGGACAAATTGACGA 58.327 47.619 0.00 0.00 0.00 4.20
104 105 3.057019 CGAGACAGGACAAATTGACGAA 58.943 45.455 0.00 0.00 0.00 3.85
105 106 3.121944 CGAGACAGGACAAATTGACGAAG 59.878 47.826 0.00 0.00 0.00 3.79
106 107 2.808543 AGACAGGACAAATTGACGAAGC 59.191 45.455 0.00 0.00 0.00 3.86
107 108 2.808543 GACAGGACAAATTGACGAAGCT 59.191 45.455 0.00 0.00 0.00 3.74
108 109 3.994392 GACAGGACAAATTGACGAAGCTA 59.006 43.478 0.00 0.00 0.00 3.32
109 110 3.746492 ACAGGACAAATTGACGAAGCTAC 59.254 43.478 0.00 0.00 0.00 3.58
110 111 3.745975 CAGGACAAATTGACGAAGCTACA 59.254 43.478 0.00 0.00 0.00 2.74
111 112 3.746492 AGGACAAATTGACGAAGCTACAC 59.254 43.478 0.00 0.00 0.00 2.90
112 113 3.423123 GGACAAATTGACGAAGCTACACG 60.423 47.826 0.00 6.38 0.00 4.49
113 114 3.386486 ACAAATTGACGAAGCTACACGA 58.614 40.909 13.25 0.00 0.00 4.35
114 115 3.428870 ACAAATTGACGAAGCTACACGAG 59.571 43.478 13.25 0.00 0.00 4.18
115 116 3.570926 AATTGACGAAGCTACACGAGA 57.429 42.857 13.25 1.72 0.00 4.04
116 117 3.784701 ATTGACGAAGCTACACGAGAT 57.215 42.857 13.25 3.51 0.00 2.75
117 118 3.570926 TTGACGAAGCTACACGAGATT 57.429 42.857 13.25 0.00 36.16 2.40
118 119 3.132629 TGACGAAGCTACACGAGATTC 57.867 47.619 13.25 0.00 45.42 2.52
119 120 2.159421 TGACGAAGCTACACGAGATTCC 60.159 50.000 13.25 0.00 46.01 3.01
120 121 2.093106 ACGAAGCTACACGAGATTCCT 58.907 47.619 13.25 0.00 46.01 3.36
121 122 3.276857 ACGAAGCTACACGAGATTCCTA 58.723 45.455 13.25 0.00 46.01 2.94
122 123 3.065095 ACGAAGCTACACGAGATTCCTAC 59.935 47.826 13.25 0.00 46.01 3.18
123 124 3.548415 CGAAGCTACACGAGATTCCTACC 60.548 52.174 0.00 0.00 46.01 3.18
124 125 3.300239 AGCTACACGAGATTCCTACCT 57.700 47.619 0.00 0.00 0.00 3.08
125 126 2.952978 AGCTACACGAGATTCCTACCTG 59.047 50.000 0.00 0.00 0.00 4.00
126 127 2.544069 GCTACACGAGATTCCTACCTGC 60.544 54.545 0.00 0.00 0.00 4.85
127 128 1.853963 ACACGAGATTCCTACCTGCT 58.146 50.000 0.00 0.00 0.00 4.24
128 129 1.751924 ACACGAGATTCCTACCTGCTC 59.248 52.381 0.00 0.00 0.00 4.26
129 130 1.067821 CACGAGATTCCTACCTGCTCC 59.932 57.143 0.00 0.00 0.00 4.70
130 131 1.063567 ACGAGATTCCTACCTGCTCCT 60.064 52.381 0.00 0.00 0.00 3.69
131 132 1.611491 CGAGATTCCTACCTGCTCCTC 59.389 57.143 0.00 0.00 0.00 3.71
132 133 2.672098 GAGATTCCTACCTGCTCCTCA 58.328 52.381 0.00 0.00 0.00 3.86
133 134 2.627699 GAGATTCCTACCTGCTCCTCAG 59.372 54.545 0.00 0.00 42.49 3.35
146 147 3.458163 CTCAGGGCGGCGAGGTTA 61.458 66.667 12.98 0.00 0.00 2.85
147 148 3.432051 CTCAGGGCGGCGAGGTTAG 62.432 68.421 12.98 0.00 0.00 2.34
148 149 4.530857 CAGGGCGGCGAGGTTAGG 62.531 72.222 12.98 0.00 0.00 2.69
149 150 4.772231 AGGGCGGCGAGGTTAGGA 62.772 66.667 12.98 0.00 0.00 2.94
150 151 3.547513 GGGCGGCGAGGTTAGGAT 61.548 66.667 12.98 0.00 0.00 3.24
151 152 2.029221 GGCGGCGAGGTTAGGATC 59.971 66.667 12.98 0.00 0.00 3.36
152 153 2.499827 GGCGGCGAGGTTAGGATCT 61.500 63.158 12.98 0.00 0.00 2.75
153 154 1.007154 GCGGCGAGGTTAGGATCTC 60.007 63.158 12.98 0.00 0.00 2.75
154 155 1.457009 GCGGCGAGGTTAGGATCTCT 61.457 60.000 12.98 0.00 0.00 3.10
155 156 0.594110 CGGCGAGGTTAGGATCTCTC 59.406 60.000 0.00 0.00 0.00 3.20
156 157 1.693627 GGCGAGGTTAGGATCTCTCA 58.306 55.000 0.00 0.00 0.00 3.27
157 158 2.243810 GGCGAGGTTAGGATCTCTCAT 58.756 52.381 0.00 0.00 0.00 2.90
158 159 2.230266 GGCGAGGTTAGGATCTCTCATC 59.770 54.545 0.00 0.00 0.00 2.92
159 160 2.095466 GCGAGGTTAGGATCTCTCATCG 60.095 54.545 0.00 2.03 0.00 3.84
160 161 3.142951 CGAGGTTAGGATCTCTCATCGT 58.857 50.000 0.00 0.00 0.00 3.73
161 162 4.316645 CGAGGTTAGGATCTCTCATCGTA 58.683 47.826 0.00 0.00 0.00 3.43
162 163 4.152759 CGAGGTTAGGATCTCTCATCGTAC 59.847 50.000 0.00 0.00 0.00 3.67
163 164 5.050126 AGGTTAGGATCTCTCATCGTACA 57.950 43.478 0.00 0.00 0.00 2.90
164 165 5.446860 AGGTTAGGATCTCTCATCGTACAA 58.553 41.667 0.00 0.00 0.00 2.41
165 166 5.299782 AGGTTAGGATCTCTCATCGTACAAC 59.700 44.000 0.00 0.00 0.00 3.32
166 167 3.972950 AGGATCTCTCATCGTACAACG 57.027 47.619 0.00 0.00 44.19 4.10
177 178 3.374220 TCGTACAACGAGATTTGGTGT 57.626 42.857 0.00 0.00 46.73 4.16
178 179 3.311106 TCGTACAACGAGATTTGGTGTC 58.689 45.455 0.00 0.00 46.73 3.67
179 180 3.054166 CGTACAACGAGATTTGGTGTCA 58.946 45.455 0.00 0.00 46.05 3.58
180 181 3.121279 CGTACAACGAGATTTGGTGTCAG 59.879 47.826 0.00 0.00 46.05 3.51
181 182 3.469008 ACAACGAGATTTGGTGTCAGA 57.531 42.857 0.00 0.00 0.00 3.27
182 183 4.008074 ACAACGAGATTTGGTGTCAGAT 57.992 40.909 0.00 0.00 0.00 2.90
183 184 4.389374 ACAACGAGATTTGGTGTCAGATT 58.611 39.130 0.00 0.00 0.00 2.40
184 185 4.452455 ACAACGAGATTTGGTGTCAGATTC 59.548 41.667 0.00 0.00 0.00 2.52
185 186 4.543590 ACGAGATTTGGTGTCAGATTCT 57.456 40.909 0.00 0.00 0.00 2.40
186 187 4.899502 ACGAGATTTGGTGTCAGATTCTT 58.100 39.130 0.00 0.00 0.00 2.52
187 188 4.932200 ACGAGATTTGGTGTCAGATTCTTC 59.068 41.667 0.00 0.00 0.00 2.87
188 189 4.931601 CGAGATTTGGTGTCAGATTCTTCA 59.068 41.667 0.00 0.00 0.00 3.02
189 190 5.063186 CGAGATTTGGTGTCAGATTCTTCAG 59.937 44.000 0.00 0.00 0.00 3.02
190 191 6.119240 AGATTTGGTGTCAGATTCTTCAGA 57.881 37.500 0.00 0.00 0.00 3.27
191 192 6.171921 AGATTTGGTGTCAGATTCTTCAGAG 58.828 40.000 0.00 0.00 0.00 3.35
192 193 4.963318 TTGGTGTCAGATTCTTCAGAGT 57.037 40.909 0.00 0.00 0.00 3.24
193 194 4.263018 TGGTGTCAGATTCTTCAGAGTG 57.737 45.455 0.00 0.00 0.00 3.51
194 195 3.897505 TGGTGTCAGATTCTTCAGAGTGA 59.102 43.478 0.00 0.00 0.00 3.41
195 196 4.529769 TGGTGTCAGATTCTTCAGAGTGAT 59.470 41.667 0.00 0.00 0.00 3.06
196 197 5.012458 TGGTGTCAGATTCTTCAGAGTGATT 59.988 40.000 0.00 0.00 0.00 2.57
197 198 5.936956 GGTGTCAGATTCTTCAGAGTGATTT 59.063 40.000 0.00 0.00 0.00 2.17
198 199 7.099764 GGTGTCAGATTCTTCAGAGTGATTTA 58.900 38.462 0.00 0.00 0.00 1.40
199 200 7.604164 GGTGTCAGATTCTTCAGAGTGATTTAA 59.396 37.037 0.00 0.00 0.00 1.52
200 201 8.655092 GTGTCAGATTCTTCAGAGTGATTTAAG 58.345 37.037 0.00 0.00 0.00 1.85
201 202 7.821359 TGTCAGATTCTTCAGAGTGATTTAAGG 59.179 37.037 0.00 0.00 0.00 2.69
202 203 7.821846 GTCAGATTCTTCAGAGTGATTTAAGGT 59.178 37.037 0.00 0.00 0.00 3.50
203 204 8.378565 TCAGATTCTTCAGAGTGATTTAAGGTT 58.621 33.333 0.00 0.00 0.00 3.50
204 205 8.663911 CAGATTCTTCAGAGTGATTTAAGGTTC 58.336 37.037 0.00 0.00 0.00 3.62
205 206 7.547370 AGATTCTTCAGAGTGATTTAAGGTTCG 59.453 37.037 0.00 0.00 0.00 3.95
206 207 6.340962 TCTTCAGAGTGATTTAAGGTTCGA 57.659 37.500 0.00 0.00 0.00 3.71
207 208 6.157211 TCTTCAGAGTGATTTAAGGTTCGAC 58.843 40.000 0.00 0.00 0.00 4.20
208 209 4.482386 TCAGAGTGATTTAAGGTTCGACG 58.518 43.478 0.00 0.00 0.00 5.12
209 210 4.216902 TCAGAGTGATTTAAGGTTCGACGA 59.783 41.667 0.00 0.00 0.00 4.20
210 211 4.323868 CAGAGTGATTTAAGGTTCGACGAC 59.676 45.833 0.00 0.00 0.00 4.34
211 212 3.240069 AGTGATTTAAGGTTCGACGACG 58.760 45.455 0.00 0.00 41.26 5.12
220 221 2.572388 TCGACGACGACGATTGCG 60.572 61.111 17.84 11.46 43.81 4.85
221 222 3.594827 CGACGACGACGATTGCGG 61.595 66.667 15.32 0.00 43.17 5.69
222 223 3.898640 GACGACGACGATTGCGGC 61.899 66.667 15.32 0.00 43.80 6.53
223 224 4.415332 ACGACGACGATTGCGGCT 62.415 61.111 15.32 0.00 45.51 5.52
224 225 3.179265 CGACGACGATTGCGGCTT 61.179 61.111 0.00 0.00 45.51 4.35
225 226 2.695646 GACGACGATTGCGGCTTC 59.304 61.111 0.00 0.00 45.51 3.86
226 227 3.126722 GACGACGATTGCGGCTTCG 62.127 63.158 19.32 19.32 45.51 3.79
227 228 3.913573 CGACGATTGCGGCTTCGG 61.914 66.667 22.87 8.52 45.51 4.30
228 229 3.564027 GACGATTGCGGCTTCGGG 61.564 66.667 22.87 4.52 43.91 5.14
239 240 4.016706 CTTCGGGGCGTTGGTCCT 62.017 66.667 0.00 0.00 38.30 3.85
240 241 3.546714 CTTCGGGGCGTTGGTCCTT 62.547 63.158 0.00 0.00 38.30 3.36
241 242 3.835790 TTCGGGGCGTTGGTCCTTG 62.836 63.158 0.00 0.00 38.30 3.61
246 247 4.966787 GCGTTGGTCCTTGGGGCA 62.967 66.667 0.00 0.00 0.00 5.36
247 248 2.983592 CGTTGGTCCTTGGGGCAC 60.984 66.667 0.00 0.00 0.00 5.01
261 262 3.064324 GCACCCGCATGAAGGCTT 61.064 61.111 0.00 0.00 38.36 4.35
262 263 2.639327 GCACCCGCATGAAGGCTTT 61.639 57.895 0.00 0.00 38.36 3.51
263 264 1.508088 CACCCGCATGAAGGCTTTC 59.492 57.895 0.00 0.77 0.00 2.62
264 265 1.678970 ACCCGCATGAAGGCTTTCC 60.679 57.895 6.06 0.00 32.09 3.13
265 266 1.678635 CCCGCATGAAGGCTTTCCA 60.679 57.895 6.06 0.00 32.09 3.53
266 267 1.660560 CCCGCATGAAGGCTTTCCAG 61.661 60.000 6.06 0.00 32.09 3.86
267 268 0.962356 CCGCATGAAGGCTTTCCAGT 60.962 55.000 6.06 0.00 32.09 4.00
268 269 0.883833 CGCATGAAGGCTTTCCAGTT 59.116 50.000 6.06 0.00 32.09 3.16
269 270 1.401931 CGCATGAAGGCTTTCCAGTTG 60.402 52.381 6.06 0.53 32.09 3.16
270 271 1.615392 GCATGAAGGCTTTCCAGTTGT 59.385 47.619 6.06 0.00 32.09 3.32
271 272 2.352127 GCATGAAGGCTTTCCAGTTGTC 60.352 50.000 6.06 0.00 32.09 3.18
272 273 1.593196 TGAAGGCTTTCCAGTTGTCG 58.407 50.000 6.06 0.00 32.09 4.35
273 274 0.238553 GAAGGCTTTCCAGTTGTCGC 59.761 55.000 0.00 0.00 33.74 5.19
274 275 0.179018 AAGGCTTTCCAGTTGTCGCT 60.179 50.000 0.00 0.00 33.74 4.93
275 276 0.179018 AGGCTTTCCAGTTGTCGCTT 60.179 50.000 0.00 0.00 33.74 4.68
276 277 0.238553 GGCTTTCCAGTTGTCGCTTC 59.761 55.000 0.00 0.00 0.00 3.86
277 278 0.110644 GCTTTCCAGTTGTCGCTTCG 60.111 55.000 0.00 0.00 0.00 3.79
278 279 0.512952 CTTTCCAGTTGTCGCTTCGG 59.487 55.000 0.00 0.00 0.00 4.30
279 280 0.179067 TTTCCAGTTGTCGCTTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
280 281 0.675083 TTCCAGTTGTCGCTTCGGTA 59.325 50.000 0.00 0.00 0.00 4.02
281 282 0.892755 TCCAGTTGTCGCTTCGGTAT 59.107 50.000 0.00 0.00 0.00 2.73
282 283 0.999406 CCAGTTGTCGCTTCGGTATG 59.001 55.000 0.00 0.00 0.00 2.39
283 284 0.999406 CAGTTGTCGCTTCGGTATGG 59.001 55.000 0.00 0.00 0.00 2.74
284 285 0.892755 AGTTGTCGCTTCGGTATGGA 59.107 50.000 0.00 0.00 0.00 3.41
285 286 1.135083 AGTTGTCGCTTCGGTATGGAG 60.135 52.381 0.00 0.00 0.00 3.86
286 287 0.174845 TTGTCGCTTCGGTATGGAGG 59.825 55.000 0.00 0.00 0.00 4.30
287 288 1.591863 GTCGCTTCGGTATGGAGGC 60.592 63.158 0.00 0.00 35.85 4.70
288 289 2.055633 TCGCTTCGGTATGGAGGCA 61.056 57.895 0.00 0.00 38.80 4.75
289 290 1.153449 CGCTTCGGTATGGAGGCAA 60.153 57.895 0.00 0.00 38.80 4.52
290 291 1.429148 CGCTTCGGTATGGAGGCAAC 61.429 60.000 0.00 0.00 38.80 4.17
291 292 0.392461 GCTTCGGTATGGAGGCAACA 60.392 55.000 0.00 0.00 38.73 3.33
292 293 1.948611 GCTTCGGTATGGAGGCAACAA 60.949 52.381 0.00 0.00 38.73 2.83
293 294 1.737793 CTTCGGTATGGAGGCAACAAC 59.262 52.381 0.00 0.00 41.41 3.32
294 295 0.687920 TCGGTATGGAGGCAACAACA 59.312 50.000 0.00 0.00 41.41 3.33
295 296 1.280710 TCGGTATGGAGGCAACAACAT 59.719 47.619 0.00 0.00 38.50 2.71
296 297 1.670811 CGGTATGGAGGCAACAACATC 59.329 52.381 0.00 0.00 36.69 3.06
297 298 1.670811 GGTATGGAGGCAACAACATCG 59.329 52.381 0.00 0.00 36.69 3.84
298 299 2.356135 GTATGGAGGCAACAACATCGT 58.644 47.619 0.00 0.00 36.69 3.73
299 300 1.453155 ATGGAGGCAACAACATCGTC 58.547 50.000 0.00 0.00 41.41 4.20
300 301 0.107643 TGGAGGCAACAACATCGTCA 59.892 50.000 0.00 0.00 41.41 4.35
301 302 1.271325 TGGAGGCAACAACATCGTCAT 60.271 47.619 0.00 0.00 41.41 3.06
302 303 1.131126 GGAGGCAACAACATCGTCATG 59.869 52.381 0.00 0.00 41.41 3.07
303 304 1.806542 GAGGCAACAACATCGTCATGT 59.193 47.619 0.00 0.00 45.89 3.21
304 305 1.806542 AGGCAACAACATCGTCATGTC 59.193 47.619 0.00 0.00 42.89 3.06
305 306 1.535028 GGCAACAACATCGTCATGTCA 59.465 47.619 0.00 0.00 42.89 3.58
306 307 2.413239 GGCAACAACATCGTCATGTCAG 60.413 50.000 0.00 0.00 42.89 3.51
307 308 2.843077 CAACAACATCGTCATGTCAGC 58.157 47.619 0.00 0.00 42.89 4.26
308 309 1.070821 ACAACATCGTCATGTCAGCG 58.929 50.000 0.00 0.00 42.89 5.18
309 310 1.336795 ACAACATCGTCATGTCAGCGA 60.337 47.619 0.00 0.00 42.89 4.93
310 311 1.726248 CAACATCGTCATGTCAGCGAA 59.274 47.619 0.00 0.00 42.89 4.70
311 312 2.078849 ACATCGTCATGTCAGCGAAA 57.921 45.000 0.00 0.00 39.15 3.46
312 313 1.726791 ACATCGTCATGTCAGCGAAAC 59.273 47.619 0.00 0.00 39.15 2.78
313 314 1.726248 CATCGTCATGTCAGCGAAACA 59.274 47.619 0.00 0.00 38.17 2.83
314 315 2.078849 TCGTCATGTCAGCGAAACAT 57.921 45.000 0.00 0.00 37.85 2.71
315 316 2.412870 TCGTCATGTCAGCGAAACATT 58.587 42.857 0.00 0.00 35.19 2.71
316 317 2.411748 TCGTCATGTCAGCGAAACATTC 59.588 45.455 0.00 0.00 35.19 2.67
317 318 2.413112 CGTCATGTCAGCGAAACATTCT 59.587 45.455 0.00 0.00 35.19 2.40
318 319 3.722957 CGTCATGTCAGCGAAACATTCTG 60.723 47.826 0.00 0.00 35.19 3.02
319 320 3.433274 GTCATGTCAGCGAAACATTCTGA 59.567 43.478 0.00 0.00 35.19 3.27
323 324 3.878086 TCAGCGAAACATTCTGACAAC 57.122 42.857 0.00 0.00 32.48 3.32
324 325 2.220824 TCAGCGAAACATTCTGACAACG 59.779 45.455 0.00 0.00 32.48 4.10
325 326 1.531149 AGCGAAACATTCTGACAACGG 59.469 47.619 0.00 0.00 0.00 4.44
326 327 1.950472 CGAAACATTCTGACAACGGC 58.050 50.000 0.00 0.00 0.00 5.68
327 328 1.262950 CGAAACATTCTGACAACGGCA 59.737 47.619 0.00 0.00 0.00 5.69
328 329 2.662791 CGAAACATTCTGACAACGGCAG 60.663 50.000 0.00 0.00 34.71 4.85
329 330 1.967319 AACATTCTGACAACGGCAGT 58.033 45.000 0.00 0.00 34.98 4.40
330 331 1.229428 ACATTCTGACAACGGCAGTG 58.771 50.000 0.00 0.00 34.98 3.66
331 332 1.202639 ACATTCTGACAACGGCAGTGA 60.203 47.619 0.00 0.00 34.98 3.41
332 333 2.079158 CATTCTGACAACGGCAGTGAT 58.921 47.619 0.00 0.00 34.98 3.06
333 334 3.261580 CATTCTGACAACGGCAGTGATA 58.738 45.455 0.00 0.00 34.98 2.15
334 335 2.654749 TCTGACAACGGCAGTGATAG 57.345 50.000 0.00 0.00 34.98 2.08
335 336 1.893137 TCTGACAACGGCAGTGATAGT 59.107 47.619 0.00 0.00 34.98 2.12
336 337 2.299013 TCTGACAACGGCAGTGATAGTT 59.701 45.455 0.00 0.00 34.98 2.24
337 338 3.067106 CTGACAACGGCAGTGATAGTTT 58.933 45.455 0.00 0.00 0.00 2.66
338 339 2.805671 TGACAACGGCAGTGATAGTTTG 59.194 45.455 0.00 0.00 0.00 2.93
339 340 2.151202 ACAACGGCAGTGATAGTTTGG 58.849 47.619 0.00 0.00 0.00 3.28
340 341 2.151202 CAACGGCAGTGATAGTTTGGT 58.849 47.619 0.00 0.00 0.00 3.67
341 342 3.244284 ACAACGGCAGTGATAGTTTGGTA 60.244 43.478 0.00 0.00 0.00 3.25
342 343 3.247006 ACGGCAGTGATAGTTTGGTAG 57.753 47.619 0.00 0.00 0.00 3.18
343 344 1.933853 CGGCAGTGATAGTTTGGTAGC 59.066 52.381 0.00 0.00 0.00 3.58
344 345 2.289565 GGCAGTGATAGTTTGGTAGCC 58.710 52.381 0.00 0.00 0.00 3.93
345 346 2.289565 GCAGTGATAGTTTGGTAGCCC 58.710 52.381 0.00 0.00 0.00 5.19
346 347 2.355716 GCAGTGATAGTTTGGTAGCCCA 60.356 50.000 0.00 0.00 39.65 5.36
347 348 3.535561 CAGTGATAGTTTGGTAGCCCAG 58.464 50.000 0.00 0.00 43.15 4.45
348 349 3.197766 CAGTGATAGTTTGGTAGCCCAGA 59.802 47.826 0.00 0.00 43.15 3.86
349 350 3.452627 AGTGATAGTTTGGTAGCCCAGAG 59.547 47.826 0.00 0.00 43.15 3.35
350 351 3.451178 GTGATAGTTTGGTAGCCCAGAGA 59.549 47.826 0.00 0.00 43.15 3.10
351 352 3.451178 TGATAGTTTGGTAGCCCAGAGAC 59.549 47.826 0.00 0.00 43.15 3.36
352 353 0.984995 AGTTTGGTAGCCCAGAGACC 59.015 55.000 0.00 0.00 43.15 3.85
353 354 0.984995 GTTTGGTAGCCCAGAGACCT 59.015 55.000 0.00 0.00 43.15 3.85
354 355 0.984230 TTTGGTAGCCCAGAGACCTG 59.016 55.000 0.00 0.00 43.15 4.00
424 425 7.849804 ATAATCTGATAAACAAAGTCAGCGT 57.150 32.000 0.00 0.00 39.30 5.07
430 431 2.604046 AACAAAGTCAGCGTGTCTCT 57.396 45.000 0.00 0.00 0.00 3.10
508 510 2.125512 CGCTTCTCCCAAGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
520 522 3.467226 GTCCCGATCCCTTCGCCA 61.467 66.667 0.00 0.00 46.71 5.69
539 541 1.453379 CGAAGCCTAGAGACCGGGA 60.453 63.158 6.32 0.00 0.00 5.14
701 712 2.230189 ATCCTCTGCCTCGGAGACCA 62.230 60.000 6.58 2.52 39.05 4.02
734 750 7.181361 TCCCTATTTGGTTTGATCATCTTTCA 58.819 34.615 0.00 0.00 0.00 2.69
738 754 7.771927 ATTTGGTTTGATCATCTTTCAGAGT 57.228 32.000 0.00 0.00 0.00 3.24
891 1509 1.032114 GCTGCGGCTAGTTGGGATTT 61.032 55.000 11.21 0.00 35.22 2.17
896 1514 2.017049 CGGCTAGTTGGGATTTCCTTG 58.983 52.381 0.00 0.00 36.20 3.61
900 1518 2.683211 AGTTGGGATTTCCTTGCTGT 57.317 45.000 0.00 0.00 36.20 4.40
902 1520 4.322057 AGTTGGGATTTCCTTGCTGTAT 57.678 40.909 0.00 0.00 36.20 2.29
976 1618 2.041620 CTCTCCCACTTCATTCCCCAAA 59.958 50.000 0.00 0.00 0.00 3.28
1150 1836 4.762251 AGTCTTGTAAAGCTGGGAATCAAC 59.238 41.667 0.00 0.00 45.70 3.18
1151 1837 4.762251 GTCTTGTAAAGCTGGGAATCAACT 59.238 41.667 0.00 0.00 45.70 3.16
1152 1838 5.938125 GTCTTGTAAAGCTGGGAATCAACTA 59.062 40.000 0.00 0.00 45.70 2.24
1153 1839 6.599638 GTCTTGTAAAGCTGGGAATCAACTAT 59.400 38.462 0.00 0.00 45.70 2.12
1154 1840 6.823689 TCTTGTAAAGCTGGGAATCAACTATC 59.176 38.462 0.00 0.00 45.70 2.08
1155 1841 6.061022 TGTAAAGCTGGGAATCAACTATCA 57.939 37.500 0.00 0.00 0.00 2.15
1156 1842 6.480763 TGTAAAGCTGGGAATCAACTATCAA 58.519 36.000 0.00 0.00 0.00 2.57
1178 1865 8.561738 TCAAGTGAGTTAACTTTTCTTCTTGT 57.438 30.769 10.02 0.00 38.34 3.16
1280 1971 5.314923 TGAATGTGGCTAAAGCTTTGATC 57.685 39.130 22.02 10.61 41.70 2.92
1284 1975 3.188460 TGTGGCTAAAGCTTTGATCGAAC 59.812 43.478 22.02 12.04 41.70 3.95
1320 2011 4.164030 TGAATGCATATCGGCCTGGTATAT 59.836 41.667 0.00 0.00 0.00 0.86
1359 2053 4.320608 ACTTTGTGTATTGCTTGGTTGG 57.679 40.909 0.00 0.00 0.00 3.77
1376 2070 5.701224 TGGTTGGTTATCTCCATTATTCCC 58.299 41.667 0.00 0.00 37.33 3.97
1384 2078 3.743521 TCTCCATTATTCCCAGAATGCG 58.256 45.455 0.08 0.00 32.69 4.73
1391 2085 3.627395 ATTCCCAGAATGCGTAACAGA 57.373 42.857 0.00 0.00 31.97 3.41
1392 2086 3.410631 TTCCCAGAATGCGTAACAGAA 57.589 42.857 0.00 0.00 31.97 3.02
1557 2253 3.005367 ACGACCATAGCCCAAAAGTTTTG 59.995 43.478 19.48 19.48 0.00 2.44
1660 2356 7.820757 CACAATATGTGCGCAAGTAAAAATAG 58.179 34.615 14.00 0.00 41.89 1.73
1727 2423 6.251471 ACAGAATCAACTCAATCAAGGGAAT 58.749 36.000 0.00 0.00 0.00 3.01
1904 2601 4.811024 CCTCCCTTTTCTTTTTCTGTTTGC 59.189 41.667 0.00 0.00 0.00 3.68
2224 2921 9.997482 TTTGCTTTATTATACTTCGATTTGACC 57.003 29.630 0.00 0.00 0.00 4.02
2400 3099 6.615316 TCATGACTAGGAAGATGTAATTCCCA 59.385 38.462 0.00 0.00 46.24 4.37
2420 3119 1.342555 TGAAACTTCATCGCGTACCG 58.657 50.000 5.77 0.00 33.01 4.02
2467 3166 7.436080 TGTTTTACGTGTCTCTAACCTAAGTTG 59.564 37.037 0.00 0.00 36.68 3.16
2530 3229 1.374758 GAGCCCGACAAGACCTGTG 60.375 63.158 0.00 0.00 38.84 3.66
2768 3467 4.271696 TCCCACATTGTCTAGTTCAGTG 57.728 45.455 9.91 9.91 0.00 3.66
2777 3476 8.367911 ACATTGTCTAGTTCAGTGATCACTAAA 58.632 33.333 27.44 17.87 40.20 1.85
3039 3741 0.402504 TTGCACCTGGTAACCGGATT 59.597 50.000 9.46 0.67 29.82 3.01
3319 4021 3.490348 ACTTGCATCTTGCTAAACCAGT 58.510 40.909 0.75 0.00 45.31 4.00
3327 4029 2.738587 TGCTAAACCAGTTTGTCCCA 57.261 45.000 6.03 0.00 34.23 4.37
3454 4158 6.092748 ACTTTTTATGAATAAACAGGCTGCG 58.907 36.000 15.89 0.00 35.44 5.18
3627 4331 6.810911 TGTGTTGTTGGTTACATGCTTTATT 58.189 32.000 0.00 0.00 36.44 1.40
3847 4554 3.975312 TGGTTTTACCCTACAGGAGAACA 59.025 43.478 0.00 0.00 37.50 3.18
3878 4585 6.395629 ACTACAACCACACACATATAGTCAC 58.604 40.000 0.00 0.00 0.00 3.67
3907 4614 5.748152 GCTTTATCACTCTTGTTGTTTGCAA 59.252 36.000 0.00 0.00 0.00 4.08
3977 4684 3.053320 TGATTCCTCCTGCTCTCTACAGA 60.053 47.826 0.00 0.00 37.32 3.41
4059 6110 5.426504 TGTGCAAATGTTCTGTTGGAAAAT 58.573 33.333 0.00 0.00 35.51 1.82
4216 6271 9.723601 ATGTTATGTTGCAAATAAAACTTGGAT 57.276 25.926 0.00 0.00 0.00 3.41
4218 6273 9.810231 GTTATGTTGCAAATAAAACTTGGATTG 57.190 29.630 0.00 0.00 0.00 2.67
4234 6289 2.368439 GATTGTTGCTGCCAGGTCATA 58.632 47.619 0.00 0.00 0.00 2.15
4464 6521 7.496529 TGTTCTGAACTAGTTTGGAAGATTG 57.503 36.000 20.18 0.00 0.00 2.67
4497 6554 7.659390 AGTTTTCACAGTTTTCATTTGACCAAA 59.341 29.630 0.00 0.00 34.46 3.28
4514 6571 5.530915 TGACCAAAATCCGCTTATAGAATGG 59.469 40.000 0.00 0.00 0.00 3.16
4734 6793 1.257750 GCCCCCAGTCCAAATCCAAC 61.258 60.000 0.00 0.00 0.00 3.77
4749 6808 3.053831 TCCAACTCCAAATCCGTCTTC 57.946 47.619 0.00 0.00 0.00 2.87
4862 6921 1.219664 CCCAATGTGCAGCCAATGG 59.780 57.895 9.82 9.82 0.00 3.16
4901 6960 2.534396 AACGGATGGGGCTCACCAA 61.534 57.895 0.00 0.00 45.13 3.67
5054 7113 4.023193 ACAACAACCCTTCGATTGTGATTC 60.023 41.667 3.04 0.00 39.00 2.52
5071 7130 1.059584 TTCCACCTGAGGCACTTCCA 61.060 55.000 0.00 0.00 41.55 3.53
5112 7171 1.358759 CGGTTCCAACACCAACTGC 59.641 57.895 0.00 0.00 36.49 4.40
5283 7342 3.418684 ACCTGTAGAAAATGAAGCCGT 57.581 42.857 0.00 0.00 0.00 5.68
5535 7598 1.982660 GGTGCTTCCCCCTATTAAGC 58.017 55.000 0.00 0.00 44.63 3.09
5748 7819 5.048782 TGCTTTCATGGTATCGATTATTGCC 60.049 40.000 1.71 0.00 0.00 4.52
5821 7893 1.197721 CTGGCTTCGAACGAAAATGCT 59.802 47.619 10.68 0.00 33.34 3.79
5836 7908 2.653234 ATGCTAAATGGAGGCTGAGG 57.347 50.000 0.00 0.00 0.00 3.86
5892 7964 7.813852 ATTCGTACTTCTGTGTTTCATACTC 57.186 36.000 0.00 0.00 0.00 2.59
6063 8272 2.107953 GTCTCCATGGAGCTCGGC 59.892 66.667 33.39 17.57 41.71 5.54
6079 8288 0.607620 CGGCATCCAAAACACCCAAT 59.392 50.000 0.00 0.00 0.00 3.16
6093 8302 1.256812 CCCAATTCGGCTTCAAACCT 58.743 50.000 0.00 0.00 0.00 3.50
6094 8303 1.067635 CCCAATTCGGCTTCAAACCTG 60.068 52.381 0.00 0.00 0.00 4.00
6117 8326 1.563924 TTTAGCCGTGCTCCCTCTTA 58.436 50.000 1.46 0.00 40.44 2.10
6118 8327 1.789523 TTAGCCGTGCTCCCTCTTAT 58.210 50.000 1.46 0.00 40.44 1.73
6119 8328 1.329256 TAGCCGTGCTCCCTCTTATC 58.671 55.000 1.46 0.00 40.44 1.75
6143 8357 1.663695 CTTATAACGTGGGCACAGGG 58.336 55.000 14.09 0.00 36.82 4.45
6148 8362 0.973496 AACGTGGGCACAGGGTTTTT 60.973 50.000 14.09 0.00 36.82 1.94
6363 8578 2.418280 GAGCAAAAGCTTGACTAGGCTC 59.582 50.000 0.00 8.89 38.18 4.70
6364 8579 2.154462 GCAAAAGCTTGACTAGGCTCA 58.846 47.619 0.00 0.00 37.87 4.26
6381 8596 2.099921 GCTCATCTGAAGCTCGTTAGGA 59.900 50.000 0.00 0.00 0.00 2.94
6435 8650 2.366640 TCTAACGAGGGGATGAGAGG 57.633 55.000 0.00 0.00 0.00 3.69
6439 8654 1.231641 CGAGGGGATGAGAGGGAGT 59.768 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.859135 GACAAATCGTTCGCGCTGC 60.859 57.895 5.56 0.00 41.05 5.25
10 11 1.575132 CGACAAATCGTTCGCGCTG 60.575 57.895 5.56 0.00 43.66 5.18
11 12 2.769617 CGACAAATCGTTCGCGCT 59.230 55.556 5.56 0.00 43.66 5.92
20 21 2.474526 CCGATTCACTGTGCGACAAATC 60.475 50.000 2.12 6.07 0.00 2.17
21 22 1.464608 CCGATTCACTGTGCGACAAAT 59.535 47.619 2.12 0.00 0.00 2.32
22 23 0.865111 CCGATTCACTGTGCGACAAA 59.135 50.000 2.12 0.00 0.00 2.83
23 24 0.948623 CCCGATTCACTGTGCGACAA 60.949 55.000 2.12 0.00 0.00 3.18
24 25 1.374125 CCCGATTCACTGTGCGACA 60.374 57.895 2.12 0.00 0.00 4.35
25 26 2.740714 GCCCGATTCACTGTGCGAC 61.741 63.158 2.12 0.00 0.00 5.19
26 27 2.434185 GCCCGATTCACTGTGCGA 60.434 61.111 2.12 0.00 0.00 5.10
27 28 2.741985 TGCCCGATTCACTGTGCG 60.742 61.111 2.12 1.02 0.00 5.34
28 29 2.870372 GTGCCCGATTCACTGTGC 59.130 61.111 2.12 0.00 0.00 4.57
29 30 0.948623 TTCGTGCCCGATTCACTGTG 60.949 55.000 0.17 0.17 43.80 3.66
30 31 0.949105 GTTCGTGCCCGATTCACTGT 60.949 55.000 0.00 0.00 43.80 3.55
31 32 0.948623 TGTTCGTGCCCGATTCACTG 60.949 55.000 0.00 0.00 43.80 3.66
32 33 0.250124 TTGTTCGTGCCCGATTCACT 60.250 50.000 0.00 0.00 43.80 3.41
33 34 0.802494 ATTGTTCGTGCCCGATTCAC 59.198 50.000 0.00 0.00 43.80 3.18
34 35 1.198867 CAATTGTTCGTGCCCGATTCA 59.801 47.619 0.00 0.00 43.80 2.57
35 36 1.199097 ACAATTGTTCGTGCCCGATTC 59.801 47.619 4.92 0.00 43.80 2.52
36 37 1.068610 CACAATTGTTCGTGCCCGATT 60.069 47.619 8.77 0.00 43.80 3.34
37 38 0.521291 CACAATTGTTCGTGCCCGAT 59.479 50.000 8.77 0.00 43.80 4.18
38 39 1.945522 CACAATTGTTCGTGCCCGA 59.054 52.632 8.77 0.00 42.41 5.14
39 40 4.531708 CACAATTGTTCGTGCCCG 57.468 55.556 8.77 0.00 0.00 6.13
43 44 2.777845 GCATATCGCACAATTGTTCGTG 59.222 45.455 25.78 18.98 41.79 4.35
44 45 2.677836 AGCATATCGCACAATTGTTCGT 59.322 40.909 25.78 17.05 46.13 3.85
45 46 3.323729 AGCATATCGCACAATTGTTCG 57.676 42.857 22.17 22.17 46.13 3.95
46 47 4.661125 TCAAGCATATCGCACAATTGTTC 58.339 39.130 8.77 2.70 46.13 3.18
47 48 4.700268 TCAAGCATATCGCACAATTGTT 57.300 36.364 8.77 0.00 46.13 2.83
48 49 4.906065 ATCAAGCATATCGCACAATTGT 57.094 36.364 4.92 4.92 46.13 2.71
49 50 4.842376 CGTATCAAGCATATCGCACAATTG 59.158 41.667 3.24 3.24 46.13 2.32
50 51 4.611355 GCGTATCAAGCATATCGCACAATT 60.611 41.667 0.00 0.00 46.13 2.32
51 52 3.120546 GCGTATCAAGCATATCGCACAAT 60.121 43.478 0.00 0.00 46.13 2.71
52 53 2.220824 GCGTATCAAGCATATCGCACAA 59.779 45.455 0.00 0.00 46.13 3.33
53 54 1.792367 GCGTATCAAGCATATCGCACA 59.208 47.619 0.00 0.00 46.13 4.57
54 55 2.061773 AGCGTATCAAGCATATCGCAC 58.938 47.619 9.76 0.00 46.13 5.34
55 56 2.061028 CAGCGTATCAAGCATATCGCA 58.939 47.619 9.76 0.00 46.13 5.10
56 57 2.328473 TCAGCGTATCAAGCATATCGC 58.672 47.619 0.00 0.00 37.57 4.58
57 58 4.168760 TCATCAGCGTATCAAGCATATCG 58.831 43.478 0.00 0.00 37.01 2.92
58 59 5.061933 CACTCATCAGCGTATCAAGCATATC 59.938 44.000 0.00 0.00 37.01 1.63
59 60 4.928020 CACTCATCAGCGTATCAAGCATAT 59.072 41.667 0.00 0.00 37.01 1.78
60 61 4.301628 CACTCATCAGCGTATCAAGCATA 58.698 43.478 0.00 0.00 37.01 3.14
61 62 3.129109 CACTCATCAGCGTATCAAGCAT 58.871 45.455 0.00 0.00 37.01 3.79
62 63 2.543641 CACTCATCAGCGTATCAAGCA 58.456 47.619 0.00 0.00 37.01 3.91
63 64 1.260033 GCACTCATCAGCGTATCAAGC 59.740 52.381 0.00 0.00 0.00 4.01
72 73 0.805322 CCTGTCTCGCACTCATCAGC 60.805 60.000 0.00 0.00 0.00 4.26
73 74 0.813821 TCCTGTCTCGCACTCATCAG 59.186 55.000 0.00 0.00 0.00 2.90
74 75 0.528017 GTCCTGTCTCGCACTCATCA 59.472 55.000 0.00 0.00 0.00 3.07
75 76 0.528017 TGTCCTGTCTCGCACTCATC 59.472 55.000 0.00 0.00 0.00 2.92
76 77 0.969149 TTGTCCTGTCTCGCACTCAT 59.031 50.000 0.00 0.00 0.00 2.90
77 78 0.750249 TTTGTCCTGTCTCGCACTCA 59.250 50.000 0.00 0.00 0.00 3.41
78 79 2.086054 ATTTGTCCTGTCTCGCACTC 57.914 50.000 0.00 0.00 0.00 3.51
79 80 2.146342 CAATTTGTCCTGTCTCGCACT 58.854 47.619 0.00 0.00 0.00 4.40
80 81 2.096218 GTCAATTTGTCCTGTCTCGCAC 60.096 50.000 0.00 0.00 0.00 5.34
81 82 2.143122 GTCAATTTGTCCTGTCTCGCA 58.857 47.619 0.00 0.00 0.00 5.10
82 83 1.126846 CGTCAATTTGTCCTGTCTCGC 59.873 52.381 0.00 0.00 0.00 5.03
83 84 2.672714 TCGTCAATTTGTCCTGTCTCG 58.327 47.619 0.00 0.00 0.00 4.04
84 85 3.120511 GCTTCGTCAATTTGTCCTGTCTC 60.121 47.826 0.00 0.00 0.00 3.36
85 86 2.808543 GCTTCGTCAATTTGTCCTGTCT 59.191 45.455 0.00 0.00 0.00 3.41
86 87 2.808543 AGCTTCGTCAATTTGTCCTGTC 59.191 45.455 0.00 0.00 0.00 3.51
87 88 2.851195 AGCTTCGTCAATTTGTCCTGT 58.149 42.857 0.00 0.00 0.00 4.00
88 89 3.745975 TGTAGCTTCGTCAATTTGTCCTG 59.254 43.478 0.00 0.00 0.00 3.86
89 90 3.746492 GTGTAGCTTCGTCAATTTGTCCT 59.254 43.478 0.00 0.00 0.00 3.85
90 91 3.423123 CGTGTAGCTTCGTCAATTTGTCC 60.423 47.826 0.00 0.00 0.00 4.02
91 92 3.427528 TCGTGTAGCTTCGTCAATTTGTC 59.572 43.478 0.00 0.00 0.00 3.18
92 93 3.386486 TCGTGTAGCTTCGTCAATTTGT 58.614 40.909 0.00 0.00 0.00 2.83
93 94 3.673338 TCTCGTGTAGCTTCGTCAATTTG 59.327 43.478 0.00 0.00 0.00 2.32
94 95 3.909430 TCTCGTGTAGCTTCGTCAATTT 58.091 40.909 0.00 0.00 0.00 1.82
95 96 3.570926 TCTCGTGTAGCTTCGTCAATT 57.429 42.857 0.00 0.00 0.00 2.32
96 97 3.784701 ATCTCGTGTAGCTTCGTCAAT 57.215 42.857 0.00 0.00 0.00 2.57
97 98 3.499048 GAATCTCGTGTAGCTTCGTCAA 58.501 45.455 0.00 0.00 0.00 3.18
98 99 2.159421 GGAATCTCGTGTAGCTTCGTCA 60.159 50.000 0.00 0.00 32.19 4.35
99 100 2.097791 AGGAATCTCGTGTAGCTTCGTC 59.902 50.000 0.00 0.00 32.19 4.20
100 101 2.093106 AGGAATCTCGTGTAGCTTCGT 58.907 47.619 0.00 0.00 32.19 3.85
101 102 2.853731 AGGAATCTCGTGTAGCTTCG 57.146 50.000 0.00 0.00 32.19 3.79
102 103 3.633065 AGGTAGGAATCTCGTGTAGCTTC 59.367 47.826 0.00 0.00 30.90 3.86
103 104 3.381908 CAGGTAGGAATCTCGTGTAGCTT 59.618 47.826 0.00 0.00 0.00 3.74
104 105 2.952978 CAGGTAGGAATCTCGTGTAGCT 59.047 50.000 0.00 0.00 0.00 3.32
105 106 2.544069 GCAGGTAGGAATCTCGTGTAGC 60.544 54.545 0.00 0.00 0.00 3.58
106 107 2.952978 AGCAGGTAGGAATCTCGTGTAG 59.047 50.000 0.00 0.00 0.00 2.74
107 108 2.950309 GAGCAGGTAGGAATCTCGTGTA 59.050 50.000 0.00 0.00 0.00 2.90
108 109 1.751924 GAGCAGGTAGGAATCTCGTGT 59.248 52.381 0.00 0.00 0.00 4.49
109 110 1.067821 GGAGCAGGTAGGAATCTCGTG 59.932 57.143 0.00 0.00 0.00 4.35
110 111 1.063567 AGGAGCAGGTAGGAATCTCGT 60.064 52.381 0.00 0.00 0.00 4.18
111 112 1.611491 GAGGAGCAGGTAGGAATCTCG 59.389 57.143 0.00 0.00 0.00 4.04
112 113 2.627699 CTGAGGAGCAGGTAGGAATCTC 59.372 54.545 0.00 0.00 41.07 2.75
113 114 2.676748 CTGAGGAGCAGGTAGGAATCT 58.323 52.381 0.00 0.00 41.07 2.40
129 130 3.432051 CTAACCTCGCCGCCCTGAG 62.432 68.421 0.00 0.00 0.00 3.35
130 131 3.458163 CTAACCTCGCCGCCCTGA 61.458 66.667 0.00 0.00 0.00 3.86
131 132 4.530857 CCTAACCTCGCCGCCCTG 62.531 72.222 0.00 0.00 0.00 4.45
132 133 4.772231 TCCTAACCTCGCCGCCCT 62.772 66.667 0.00 0.00 0.00 5.19
133 134 3.516866 GATCCTAACCTCGCCGCCC 62.517 68.421 0.00 0.00 0.00 6.13
134 135 2.029221 GATCCTAACCTCGCCGCC 59.971 66.667 0.00 0.00 0.00 6.13
135 136 1.007154 GAGATCCTAACCTCGCCGC 60.007 63.158 0.00 0.00 0.00 6.53
136 137 0.594110 GAGAGATCCTAACCTCGCCG 59.406 60.000 0.00 0.00 34.75 6.46
137 138 1.693627 TGAGAGATCCTAACCTCGCC 58.306 55.000 0.00 0.00 34.75 5.54
138 139 2.095466 CGATGAGAGATCCTAACCTCGC 60.095 54.545 0.00 0.00 34.75 5.03
139 140 3.142951 ACGATGAGAGATCCTAACCTCG 58.857 50.000 0.00 0.00 34.75 4.63
140 141 5.064558 TGTACGATGAGAGATCCTAACCTC 58.935 45.833 0.00 0.00 0.00 3.85
141 142 5.050126 TGTACGATGAGAGATCCTAACCT 57.950 43.478 0.00 0.00 0.00 3.50
142 143 5.521544 GTTGTACGATGAGAGATCCTAACC 58.478 45.833 0.00 0.00 0.00 2.85
143 144 5.007430 TCGTTGTACGATGAGAGATCCTAAC 59.993 44.000 0.47 0.00 46.73 2.34
144 145 5.121105 TCGTTGTACGATGAGAGATCCTAA 58.879 41.667 0.47 0.00 46.73 2.69
145 146 4.700700 TCGTTGTACGATGAGAGATCCTA 58.299 43.478 0.47 0.00 46.73 2.94
146 147 3.542648 TCGTTGTACGATGAGAGATCCT 58.457 45.455 0.47 0.00 46.73 3.24
147 148 3.965292 TCGTTGTACGATGAGAGATCC 57.035 47.619 0.47 0.00 46.73 3.36
158 159 3.054166 TGACACCAAATCTCGTTGTACG 58.946 45.455 0.00 0.00 44.19 3.67
159 160 4.304110 TCTGACACCAAATCTCGTTGTAC 58.696 43.478 0.00 0.00 0.00 2.90
160 161 4.594123 TCTGACACCAAATCTCGTTGTA 57.406 40.909 0.00 0.00 0.00 2.41
161 162 3.469008 TCTGACACCAAATCTCGTTGT 57.531 42.857 0.00 0.00 0.00 3.32
162 163 4.692625 AGAATCTGACACCAAATCTCGTTG 59.307 41.667 0.00 0.00 0.00 4.10
163 164 4.899502 AGAATCTGACACCAAATCTCGTT 58.100 39.130 0.00 0.00 0.00 3.85
164 165 4.543590 AGAATCTGACACCAAATCTCGT 57.456 40.909 0.00 0.00 0.00 4.18
165 166 4.931601 TGAAGAATCTGACACCAAATCTCG 59.068 41.667 0.00 0.00 0.00 4.04
166 167 6.169094 TCTGAAGAATCTGACACCAAATCTC 58.831 40.000 0.00 0.00 0.00 2.75
167 168 6.119240 TCTGAAGAATCTGACACCAAATCT 57.881 37.500 0.00 0.00 0.00 2.40
168 169 5.936956 ACTCTGAAGAATCTGACACCAAATC 59.063 40.000 0.00 0.00 31.18 2.17
169 170 5.704515 CACTCTGAAGAATCTGACACCAAAT 59.295 40.000 0.00 0.00 31.18 2.32
170 171 5.059161 CACTCTGAAGAATCTGACACCAAA 58.941 41.667 0.00 0.00 31.18 3.28
171 172 4.344968 TCACTCTGAAGAATCTGACACCAA 59.655 41.667 0.00 0.00 31.18 3.67
172 173 3.897505 TCACTCTGAAGAATCTGACACCA 59.102 43.478 0.00 0.00 31.18 4.17
173 174 4.527509 TCACTCTGAAGAATCTGACACC 57.472 45.455 0.00 0.00 31.18 4.16
174 175 8.539770 TTAAATCACTCTGAAGAATCTGACAC 57.460 34.615 0.00 0.00 31.18 3.67
175 176 7.821359 CCTTAAATCACTCTGAAGAATCTGACA 59.179 37.037 0.00 0.00 31.18 3.58
176 177 7.821846 ACCTTAAATCACTCTGAAGAATCTGAC 59.178 37.037 0.00 0.00 31.18 3.51
177 178 7.911651 ACCTTAAATCACTCTGAAGAATCTGA 58.088 34.615 0.00 0.00 33.16 3.27
178 179 8.558973 AACCTTAAATCACTCTGAAGAATCTG 57.441 34.615 0.00 0.00 0.00 2.90
179 180 7.547370 CGAACCTTAAATCACTCTGAAGAATCT 59.453 37.037 0.00 0.00 0.00 2.40
180 181 7.545965 TCGAACCTTAAATCACTCTGAAGAATC 59.454 37.037 0.00 0.00 0.00 2.52
181 182 7.332182 GTCGAACCTTAAATCACTCTGAAGAAT 59.668 37.037 0.00 0.00 0.00 2.40
182 183 6.645415 GTCGAACCTTAAATCACTCTGAAGAA 59.355 38.462 0.00 0.00 0.00 2.52
183 184 6.157211 GTCGAACCTTAAATCACTCTGAAGA 58.843 40.000 0.00 0.00 0.00 2.87
184 185 5.061064 CGTCGAACCTTAAATCACTCTGAAG 59.939 44.000 0.00 0.00 0.00 3.02
185 186 4.921515 CGTCGAACCTTAAATCACTCTGAA 59.078 41.667 0.00 0.00 0.00 3.02
186 187 4.216902 TCGTCGAACCTTAAATCACTCTGA 59.783 41.667 0.00 0.00 0.00 3.27
187 188 4.323868 GTCGTCGAACCTTAAATCACTCTG 59.676 45.833 0.00 0.00 0.00 3.35
188 189 4.483311 GTCGTCGAACCTTAAATCACTCT 58.517 43.478 0.00 0.00 0.00 3.24
189 190 3.300066 CGTCGTCGAACCTTAAATCACTC 59.700 47.826 0.00 0.00 39.71 3.51
190 191 3.058016 TCGTCGTCGAACCTTAAATCACT 60.058 43.478 1.37 0.00 43.34 3.41
191 192 3.236816 TCGTCGTCGAACCTTAAATCAC 58.763 45.455 1.37 0.00 43.34 3.06
192 193 3.557577 TCGTCGTCGAACCTTAAATCA 57.442 42.857 1.37 0.00 43.34 2.57
203 204 2.572388 CGCAATCGTCGTCGTCGA 60.572 61.111 16.35 16.35 44.12 4.20
204 205 3.594827 CCGCAATCGTCGTCGTCG 61.595 66.667 5.50 5.50 38.33 5.12
205 206 3.898640 GCCGCAATCGTCGTCGTC 61.899 66.667 1.33 0.00 38.33 4.20
206 207 3.909258 AAGCCGCAATCGTCGTCGT 62.909 57.895 1.33 0.00 38.33 4.34
207 208 3.126722 GAAGCCGCAATCGTCGTCG 62.127 63.158 0.00 0.00 38.55 5.12
208 209 2.695646 GAAGCCGCAATCGTCGTC 59.304 61.111 0.00 0.00 0.00 4.20
209 210 3.179265 CGAAGCCGCAATCGTCGT 61.179 61.111 9.66 0.00 34.48 4.34
210 211 3.913573 CCGAAGCCGCAATCGTCG 61.914 66.667 14.87 5.88 37.36 5.12
211 212 3.564027 CCCGAAGCCGCAATCGTC 61.564 66.667 14.87 0.00 37.36 4.20
222 223 3.546714 AAGGACCAACGCCCCGAAG 62.547 63.158 0.00 0.00 0.00 3.79
223 224 3.562232 AAGGACCAACGCCCCGAA 61.562 61.111 0.00 0.00 0.00 4.30
224 225 4.323477 CAAGGACCAACGCCCCGA 62.323 66.667 0.00 0.00 0.00 5.14
229 230 4.966787 TGCCCCAAGGACCAACGC 62.967 66.667 0.00 0.00 33.47 4.84
230 231 2.983592 GTGCCCCAAGGACCAACG 60.984 66.667 0.00 0.00 33.47 4.10
231 232 2.600470 GGTGCCCCAAGGACCAAC 60.600 66.667 0.00 0.00 34.93 3.77
232 233 3.909651 GGGTGCCCCAAGGACCAA 61.910 66.667 5.71 0.00 44.65 3.67
238 239 4.738998 TCATGCGGGTGCCCCAAG 62.739 66.667 10.47 0.00 45.83 3.61
239 240 4.292145 TTCATGCGGGTGCCCCAA 62.292 61.111 10.47 0.00 45.83 4.12
240 241 4.738998 CTTCATGCGGGTGCCCCA 62.739 66.667 10.47 1.49 45.83 4.96
244 245 2.548127 GAAAGCCTTCATGCGGGTGC 62.548 60.000 6.37 0.19 43.20 5.01
245 246 1.508088 GAAAGCCTTCATGCGGGTG 59.492 57.895 6.37 0.00 36.02 4.61
246 247 1.678970 GGAAAGCCTTCATGCGGGT 60.679 57.895 0.00 0.41 36.02 5.28
247 248 1.660560 CTGGAAAGCCTTCATGCGGG 61.661 60.000 0.00 1.90 36.02 6.13
248 249 0.962356 ACTGGAAAGCCTTCATGCGG 60.962 55.000 0.00 0.00 36.02 5.69
249 250 0.883833 AACTGGAAAGCCTTCATGCG 59.116 50.000 0.00 0.00 36.02 4.73
250 251 1.615392 ACAACTGGAAAGCCTTCATGC 59.385 47.619 0.00 0.00 32.75 4.06
251 252 2.095567 CGACAACTGGAAAGCCTTCATG 60.096 50.000 0.00 0.00 32.75 3.07
252 253 2.154462 CGACAACTGGAAAGCCTTCAT 58.846 47.619 0.00 0.00 32.75 2.57
253 254 1.593196 CGACAACTGGAAAGCCTTCA 58.407 50.000 0.00 0.00 32.75 3.02
254 255 0.238553 GCGACAACTGGAAAGCCTTC 59.761 55.000 0.00 0.00 34.31 3.46
255 256 0.179018 AGCGACAACTGGAAAGCCTT 60.179 50.000 0.00 0.00 34.31 4.35
256 257 0.179018 AAGCGACAACTGGAAAGCCT 60.179 50.000 0.00 0.00 34.31 4.58
257 258 0.238553 GAAGCGACAACTGGAAAGCC 59.761 55.000 0.00 0.00 0.00 4.35
258 259 0.110644 CGAAGCGACAACTGGAAAGC 60.111 55.000 0.00 0.00 0.00 3.51
259 260 0.512952 CCGAAGCGACAACTGGAAAG 59.487 55.000 0.00 0.00 0.00 2.62
260 261 0.179067 ACCGAAGCGACAACTGGAAA 60.179 50.000 0.00 0.00 0.00 3.13
261 262 0.675083 TACCGAAGCGACAACTGGAA 59.325 50.000 0.00 0.00 0.00 3.53
262 263 0.892755 ATACCGAAGCGACAACTGGA 59.107 50.000 0.00 0.00 0.00 3.86
263 264 0.999406 CATACCGAAGCGACAACTGG 59.001 55.000 0.00 0.00 0.00 4.00
264 265 0.999406 CCATACCGAAGCGACAACTG 59.001 55.000 0.00 0.00 0.00 3.16
265 266 0.892755 TCCATACCGAAGCGACAACT 59.107 50.000 0.00 0.00 0.00 3.16
266 267 1.278238 CTCCATACCGAAGCGACAAC 58.722 55.000 0.00 0.00 0.00 3.32
267 268 0.174845 CCTCCATACCGAAGCGACAA 59.825 55.000 0.00 0.00 0.00 3.18
268 269 1.813859 CCTCCATACCGAAGCGACA 59.186 57.895 0.00 0.00 0.00 4.35
269 270 1.591863 GCCTCCATACCGAAGCGAC 60.592 63.158 0.00 0.00 0.00 5.19
270 271 1.609635 TTGCCTCCATACCGAAGCGA 61.610 55.000 0.00 0.00 0.00 4.93
271 272 1.153449 TTGCCTCCATACCGAAGCG 60.153 57.895 0.00 0.00 0.00 4.68
272 273 0.392461 TGTTGCCTCCATACCGAAGC 60.392 55.000 0.00 0.00 0.00 3.86
273 274 1.737793 GTTGTTGCCTCCATACCGAAG 59.262 52.381 0.00 0.00 0.00 3.79
274 275 1.072489 TGTTGTTGCCTCCATACCGAA 59.928 47.619 0.00 0.00 0.00 4.30
275 276 0.687920 TGTTGTTGCCTCCATACCGA 59.312 50.000 0.00 0.00 0.00 4.69
276 277 1.670811 GATGTTGTTGCCTCCATACCG 59.329 52.381 0.00 0.00 0.00 4.02
277 278 1.670811 CGATGTTGTTGCCTCCATACC 59.329 52.381 0.00 0.00 0.00 2.73
278 279 2.351726 GACGATGTTGTTGCCTCCATAC 59.648 50.000 0.00 0.00 0.00 2.39
279 280 2.027653 TGACGATGTTGTTGCCTCCATA 60.028 45.455 0.00 0.00 0.00 2.74
280 281 1.271325 TGACGATGTTGTTGCCTCCAT 60.271 47.619 0.00 0.00 0.00 3.41
281 282 0.107643 TGACGATGTTGTTGCCTCCA 59.892 50.000 0.00 0.00 0.00 3.86
282 283 1.131126 CATGACGATGTTGTTGCCTCC 59.869 52.381 0.00 0.00 0.00 4.30
283 284 1.806542 ACATGACGATGTTGTTGCCTC 59.193 47.619 0.00 0.00 40.05 4.70
284 285 1.806542 GACATGACGATGTTGTTGCCT 59.193 47.619 0.00 0.00 43.22 4.75
285 286 1.535028 TGACATGACGATGTTGTTGCC 59.465 47.619 0.00 0.00 43.22 4.52
286 287 2.843077 CTGACATGACGATGTTGTTGC 58.157 47.619 0.00 0.00 43.22 4.17
287 288 2.722706 CGCTGACATGACGATGTTGTTG 60.723 50.000 0.00 0.00 43.22 3.33
288 289 1.460743 CGCTGACATGACGATGTTGTT 59.539 47.619 0.00 0.00 43.22 2.83
289 290 1.070821 CGCTGACATGACGATGTTGT 58.929 50.000 0.00 0.00 43.22 3.32
290 291 1.349234 TCGCTGACATGACGATGTTG 58.651 50.000 0.00 0.00 43.22 3.33
291 292 2.078849 TTCGCTGACATGACGATGTT 57.921 45.000 0.00 0.00 43.22 2.71
292 293 1.726791 GTTTCGCTGACATGACGATGT 59.273 47.619 0.00 0.00 46.01 3.06
293 294 1.726248 TGTTTCGCTGACATGACGATG 59.274 47.619 0.00 0.00 35.48 3.84
294 295 2.078849 TGTTTCGCTGACATGACGAT 57.921 45.000 0.00 0.00 35.48 3.73
295 296 2.078849 ATGTTTCGCTGACATGACGA 57.921 45.000 0.00 0.00 36.43 4.20
296 297 2.413112 AGAATGTTTCGCTGACATGACG 59.587 45.455 0.00 0.00 37.76 4.35
297 298 3.433274 TCAGAATGTTTCGCTGACATGAC 59.567 43.478 0.00 0.00 37.76 3.06
298 299 3.663025 TCAGAATGTTTCGCTGACATGA 58.337 40.909 0.00 0.00 37.76 3.07
303 304 2.220824 CGTTGTCAGAATGTTTCGCTGA 59.779 45.455 0.00 0.00 37.40 4.26
304 305 2.563976 CGTTGTCAGAATGTTTCGCTG 58.436 47.619 0.00 0.00 37.40 5.18
305 306 1.531149 CCGTTGTCAGAATGTTTCGCT 59.469 47.619 0.00 0.00 37.40 4.93
306 307 1.950472 CCGTTGTCAGAATGTTTCGC 58.050 50.000 0.00 0.00 37.40 4.70
307 308 1.262950 TGCCGTTGTCAGAATGTTTCG 59.737 47.619 0.00 0.00 37.40 3.46
308 309 2.290641 ACTGCCGTTGTCAGAATGTTTC 59.709 45.455 0.00 0.00 37.40 2.78
309 310 2.033299 CACTGCCGTTGTCAGAATGTTT 59.967 45.455 0.00 0.00 37.40 2.83
310 311 1.603802 CACTGCCGTTGTCAGAATGTT 59.396 47.619 0.00 0.00 37.40 2.71
311 312 1.202639 TCACTGCCGTTGTCAGAATGT 60.203 47.619 0.00 0.00 37.40 2.71
312 313 1.511850 TCACTGCCGTTGTCAGAATG 58.488 50.000 0.00 0.00 35.61 2.67
313 314 2.479566 ATCACTGCCGTTGTCAGAAT 57.520 45.000 0.00 0.00 35.61 2.40
314 315 2.299013 ACTATCACTGCCGTTGTCAGAA 59.701 45.455 0.00 0.00 35.61 3.02
315 316 1.893137 ACTATCACTGCCGTTGTCAGA 59.107 47.619 0.00 0.00 35.61 3.27
316 317 2.370281 ACTATCACTGCCGTTGTCAG 57.630 50.000 0.00 0.00 37.56 3.51
317 318 2.805671 CAAACTATCACTGCCGTTGTCA 59.194 45.455 0.00 0.00 0.00 3.58
318 319 2.159627 CCAAACTATCACTGCCGTTGTC 59.840 50.000 0.00 0.00 0.00 3.18
319 320 2.151202 CCAAACTATCACTGCCGTTGT 58.849 47.619 0.00 0.00 0.00 3.32
320 321 2.151202 ACCAAACTATCACTGCCGTTG 58.849 47.619 0.00 0.00 0.00 4.10
321 322 2.561478 ACCAAACTATCACTGCCGTT 57.439 45.000 0.00 0.00 0.00 4.44
322 323 2.677037 GCTACCAAACTATCACTGCCGT 60.677 50.000 0.00 0.00 0.00 5.68
323 324 1.933853 GCTACCAAACTATCACTGCCG 59.066 52.381 0.00 0.00 0.00 5.69
324 325 2.289565 GGCTACCAAACTATCACTGCC 58.710 52.381 0.00 0.00 0.00 4.85
325 326 2.289565 GGGCTACCAAACTATCACTGC 58.710 52.381 0.00 0.00 36.50 4.40
326 327 3.627395 TGGGCTACCAAACTATCACTG 57.373 47.619 0.00 0.00 45.87 3.66
337 338 4.461119 CAGGTCTCTGGGCTACCA 57.539 61.111 0.00 0.00 46.94 3.25
398 399 9.378551 ACGCTGACTTTGTTTATCAGATTATTA 57.621 29.630 4.70 0.00 42.07 0.98
399 400 8.177663 CACGCTGACTTTGTTTATCAGATTATT 58.822 33.333 4.70 0.00 42.07 1.40
400 401 7.334421 ACACGCTGACTTTGTTTATCAGATTAT 59.666 33.333 4.70 0.00 42.07 1.28
401 402 6.649141 ACACGCTGACTTTGTTTATCAGATTA 59.351 34.615 4.70 0.00 42.07 1.75
402 403 5.470098 ACACGCTGACTTTGTTTATCAGATT 59.530 36.000 4.70 0.00 42.07 2.40
403 404 4.997395 ACACGCTGACTTTGTTTATCAGAT 59.003 37.500 4.70 0.00 42.07 2.90
404 405 4.377021 ACACGCTGACTTTGTTTATCAGA 58.623 39.130 4.70 0.00 42.07 3.27
405 406 4.449068 AGACACGCTGACTTTGTTTATCAG 59.551 41.667 0.00 0.00 42.33 2.90
406 407 4.377021 AGACACGCTGACTTTGTTTATCA 58.623 39.130 0.00 0.00 0.00 2.15
407 408 4.686554 AGAGACACGCTGACTTTGTTTATC 59.313 41.667 0.00 0.00 0.00 1.75
408 409 4.449068 CAGAGACACGCTGACTTTGTTTAT 59.551 41.667 0.00 0.00 33.20 1.40
409 410 3.802139 CAGAGACACGCTGACTTTGTTTA 59.198 43.478 0.00 0.00 33.20 2.01
410 411 2.609459 CAGAGACACGCTGACTTTGTTT 59.391 45.455 0.00 0.00 33.20 2.83
411 412 2.159099 TCAGAGACACGCTGACTTTGTT 60.159 45.455 0.00 0.00 35.54 2.83
412 413 1.409064 TCAGAGACACGCTGACTTTGT 59.591 47.619 0.00 0.00 35.54 2.83
413 414 2.140065 TCAGAGACACGCTGACTTTG 57.860 50.000 0.00 0.00 35.54 2.77
418 419 1.282875 CACGTCAGAGACACGCTGA 59.717 57.895 0.00 0.00 41.10 4.26
419 420 1.730902 CCACGTCAGAGACACGCTG 60.731 63.158 0.00 0.00 41.10 5.18
420 421 2.645567 CCACGTCAGAGACACGCT 59.354 61.111 0.00 0.00 41.10 5.07
421 422 3.106407 GCCACGTCAGAGACACGC 61.106 66.667 0.00 0.00 41.10 5.34
422 423 1.442857 GAGCCACGTCAGAGACACG 60.443 63.158 0.00 0.00 43.13 4.49
423 424 0.315568 AAGAGCCACGTCAGAGACAC 59.684 55.000 0.00 0.00 32.09 3.67
424 425 0.598562 GAAGAGCCACGTCAGAGACA 59.401 55.000 0.00 0.00 32.09 3.41
430 431 2.133195 ACTTGGAAGAGCCACGTCA 58.867 52.632 0.00 0.00 45.21 4.35
446 447 1.901085 GCTGTGGATTCTCCCGACT 59.099 57.895 0.00 0.00 35.03 4.18
447 448 1.519455 CGCTGTGGATTCTCCCGAC 60.519 63.158 0.00 0.00 35.03 4.79
448 449 2.892640 CGCTGTGGATTCTCCCGA 59.107 61.111 0.00 0.00 35.03 5.14
449 450 2.892425 GCGCTGTGGATTCTCCCG 60.892 66.667 0.00 0.00 35.03 5.14
450 451 1.522580 GAGCGCTGTGGATTCTCCC 60.523 63.158 18.48 0.00 35.03 4.30
451 452 1.522580 GGAGCGCTGTGGATTCTCC 60.523 63.158 18.48 1.78 36.86 3.71
520 522 1.753463 CCCGGTCTCTAGGCTTCGT 60.753 63.158 0.00 0.00 0.00 3.85
539 541 5.237048 AGTTAATGCGGCATCAACATTTTT 58.763 33.333 26.27 6.78 35.68 1.94
701 712 3.750501 AACCAAATAGGGAAATCCGGT 57.249 42.857 0.00 0.00 43.89 5.28
749 766 9.185680 GCCAGGAAGAAAATTAAGGAAAGTATA 57.814 33.333 0.00 0.00 0.00 1.47
750 767 7.124298 GGCCAGGAAGAAAATTAAGGAAAGTAT 59.876 37.037 0.00 0.00 0.00 2.12
853 872 2.049985 CGGAAGATCGCCGGCTAG 60.050 66.667 26.68 10.37 44.87 3.42
859 878 3.567797 GCAGCACGGAAGATCGCC 61.568 66.667 0.00 0.00 0.00 5.54
900 1518 0.833287 GGTTGCTCCAGCTGAGGATA 59.167 55.000 17.39 0.00 41.51 2.59
902 1520 2.596851 GGGTTGCTCCAGCTGAGGA 61.597 63.158 17.39 9.27 41.73 3.71
976 1618 4.690719 TCGCCGGACGGTGCAAAT 62.691 61.111 18.71 0.00 44.84 2.32
1152 1838 9.178758 ACAAGAAGAAAAGTTAACTCACTTGAT 57.821 29.630 24.86 14.14 37.07 2.57
1153 1839 8.450964 CACAAGAAGAAAAGTTAACTCACTTGA 58.549 33.333 24.86 0.00 37.07 3.02
1154 1840 7.698130 CCACAAGAAGAAAAGTTAACTCACTTG 59.302 37.037 19.29 20.16 37.07 3.16
1155 1841 7.393515 ACCACAAGAAGAAAAGTTAACTCACTT 59.606 33.333 8.95 13.70 38.74 3.16
1156 1842 6.884836 ACCACAAGAAGAAAAGTTAACTCACT 59.115 34.615 8.95 6.02 0.00 3.41
1174 1861 4.025480 GCAAGCAAGAAATTCAACCACAAG 60.025 41.667 0.00 0.00 0.00 3.16
1178 1865 3.132646 ACTGCAAGCAAGAAATTCAACCA 59.867 39.130 0.00 0.00 37.60 3.67
1280 1971 0.950836 TCACATTTGCACCCAGTTCG 59.049 50.000 0.00 0.00 0.00 3.95
1284 1975 1.001068 TGCATTCACATTTGCACCCAG 59.999 47.619 0.00 0.00 43.54 4.45
1354 2048 5.701224 TGGGAATAATGGAGATAACCAACC 58.299 41.667 0.00 0.00 43.47 3.77
1359 2053 6.128172 CGCATTCTGGGAATAATGGAGATAAC 60.128 42.308 0.00 0.00 34.37 1.89
1376 2070 7.269937 CAGAAAAATCTTCTGTTACGCATTCTG 59.730 37.037 6.37 0.00 40.63 3.02
1384 2078 7.391833 ACTCCATCCAGAAAAATCTTCTGTTAC 59.608 37.037 12.24 0.00 43.19 2.50
1391 2085 5.222213 ACTCCACTCCATCCAGAAAAATCTT 60.222 40.000 0.00 0.00 0.00 2.40
1392 2086 4.290722 ACTCCACTCCATCCAGAAAAATCT 59.709 41.667 0.00 0.00 0.00 2.40
1512 2208 6.072728 CGTATCAAAATCAACTCACTTTGGGA 60.073 38.462 0.00 0.00 31.20 4.37
1557 2253 6.318648 TCATATCCCAAAGTATGCACAACTTC 59.681 38.462 14.77 0.00 36.17 3.01
1660 2356 7.773690 TCCTCAAACCTAATTAAACATAGGCTC 59.226 37.037 10.62 0.00 42.05 4.70
1763 2459 4.335315 TCACATTTCGTTGAAGCAGAGTTT 59.665 37.500 0.00 0.00 0.00 2.66
1774 2470 6.668541 ACATAGAAGGATCACATTTCGTTG 57.331 37.500 0.00 0.13 0.00 4.10
1825 2521 7.811236 CCTATTTTATTTAGCATGCATCCAGTG 59.189 37.037 21.98 0.00 0.00 3.66
1904 2601 1.448540 GTCCCAGCGTGTGATCCTG 60.449 63.158 0.00 0.00 0.00 3.86
2079 2776 2.942376 TGTTATGAATGGGTTAGCTGCG 59.058 45.455 0.00 0.00 0.00 5.18
2224 2921 6.715344 ATAGCAACAAATGAAAATGTGCAG 57.285 33.333 0.00 0.00 0.00 4.41
2268 2965 4.600012 ATGAAGAACGAAATAGCAACCG 57.400 40.909 0.00 0.00 0.00 4.44
2373 3070 8.160106 GGGAATTACATCTTCCTAGTCATGAAT 58.840 37.037 0.00 0.00 41.62 2.57
2768 3467 7.364522 TGACAAATGCTACTGTTTAGTGATC 57.635 36.000 0.00 0.00 37.78 2.92
3263 3965 0.530744 GGATGTGTGAGGTGACGCTA 59.469 55.000 0.00 0.00 0.00 4.26
3454 4158 3.750639 TTGACAACAACACGAGGTTTC 57.249 42.857 0.00 0.00 37.72 2.78
3703 4407 1.601903 TCACCACACAAGAATTCGTGC 59.398 47.619 19.55 0.00 36.57 5.34
3707 4411 7.202016 TGAGTAATTCACCACACAAGAATTC 57.798 36.000 0.00 0.00 41.00 2.17
3852 4559 8.195436 GTGACTATATGTGTGTGGTTGTAGTAT 58.805 37.037 0.00 0.00 0.00 2.12
3878 4585 6.408858 ACAACAAGAGTGATAAAGCATACG 57.591 37.500 0.00 0.00 0.00 3.06
3936 4643 8.486210 AGGAATCACTACAATGTAGAAATAGCA 58.514 33.333 25.41 3.03 0.00 3.49
3938 4645 9.482627 GGAGGAATCACTACAATGTAGAAATAG 57.517 37.037 25.41 10.28 0.00 1.73
3977 4684 1.338105 ACATACATGTGTGCACGAGCT 60.338 47.619 21.13 0.00 40.03 4.09
4216 6271 1.073763 AGTATGACCTGGCAGCAACAA 59.926 47.619 9.56 0.00 0.00 2.83
4218 6273 1.089920 CAGTATGACCTGGCAGCAAC 58.910 55.000 9.56 2.96 39.69 4.17
4270 6325 2.277084 AGCCGGTAAAAGCTTGTATCG 58.723 47.619 20.40 20.40 35.22 2.92
4464 6521 8.862550 AATGAAAACTGTGAAAACTGAAGATC 57.137 30.769 0.00 0.00 0.00 2.75
4497 6554 4.706842 ACACCCATTCTATAAGCGGATT 57.293 40.909 0.00 0.00 0.00 3.01
4514 6571 5.048643 ACTGAGCGATGTACTGATATACACC 60.049 44.000 0.00 0.00 37.88 4.16
4578 6637 7.596995 TCAACACAAACCAAACTTTAGTTCAAG 59.403 33.333 0.00 0.00 37.25 3.02
4749 6808 2.436646 ATTCCGCTGAAGGTGCCG 60.437 61.111 0.00 0.00 33.05 5.69
4862 6921 1.658095 GAGAGAGCTGTTCGTTGATGC 59.342 52.381 0.00 0.00 0.00 3.91
4901 6960 1.909700 TTTGAAGGCGCTGGAGAATT 58.090 45.000 7.64 0.00 0.00 2.17
5054 7113 1.002868 CTGGAAGTGCCTCAGGTGG 60.003 63.158 0.00 0.00 37.63 4.61
5071 7130 1.102978 GTGCAGTTGGTGTTGGAACT 58.897 50.000 0.00 0.00 32.48 3.01
5112 7171 2.618709 GGTGTTGGAAGAGTTGGAAGTG 59.381 50.000 0.00 0.00 0.00 3.16
5592 7655 7.173218 AGCTTCAAGATCACATAAAACGAAAGA 59.827 33.333 0.00 0.00 0.00 2.52
5660 7731 3.813166 CCACACTCTTCGGTACAAAACAT 59.187 43.478 0.00 0.00 0.00 2.71
5748 7819 5.331876 ACTAGCTTTGTAACCTAGCAGAG 57.668 43.478 0.00 0.00 37.37 3.35
5779 7850 2.121385 TGAGGTGCTCTCAGGCCT 59.879 61.111 0.00 0.00 46.71 5.19
5821 7893 1.965414 TGGACCTCAGCCTCCATTTA 58.035 50.000 0.00 0.00 31.20 1.40
5872 7944 9.694137 ACTTAAGAGTATGAAACACAGAAGTAC 57.306 33.333 10.09 0.00 33.32 2.73
5878 7950 7.604164 ACATGGACTTAAGAGTATGAAACACAG 59.396 37.037 10.09 0.00 35.88 3.66
6036 8245 6.327386 AGCTCCATGGAGACCTTAATTTTA 57.673 37.500 40.29 2.75 44.53 1.52
6047 8256 1.752358 GATGCCGAGCTCCATGGAGA 61.752 60.000 40.29 21.73 44.53 3.71
6063 8272 2.930455 GCCGAATTGGGTGTTTTGGATG 60.930 50.000 8.41 0.00 38.63 3.51
6079 8288 3.878160 AAAAACAGGTTTGAAGCCGAA 57.122 38.095 0.00 0.00 32.36 4.30
6104 8313 2.791383 CTCAGATAAGAGGGAGCACG 57.209 55.000 0.00 0.00 31.94 5.34
6117 8326 2.434336 TGCCCACGTTATAAGCTCAGAT 59.566 45.455 0.00 0.00 0.00 2.90
6118 8327 1.828595 TGCCCACGTTATAAGCTCAGA 59.171 47.619 0.00 0.00 0.00 3.27
6119 8328 1.933853 GTGCCCACGTTATAAGCTCAG 59.066 52.381 0.00 0.00 0.00 3.35
6363 8578 4.313277 TGATCCTAACGAGCTTCAGATG 57.687 45.455 0.00 0.00 0.00 2.90
6364 8579 4.586421 TCATGATCCTAACGAGCTTCAGAT 59.414 41.667 0.00 0.00 0.00 2.90
6421 8636 1.112315 CACTCCCTCTCATCCCCTCG 61.112 65.000 0.00 0.00 0.00 4.63
6435 8650 4.435651 GCAATACTCGTTAACAAGCACTCC 60.436 45.833 6.39 0.00 0.00 3.85
6439 8654 4.693095 TCATGCAATACTCGTTAACAAGCA 59.307 37.500 6.39 4.96 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.