Multiple sequence alignment - TraesCS1D01G089000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G089000 chr1D 100.000 4262 0 0 1 4262 74337241 74341502 0.000000e+00 7871.0
1 TraesCS1D01G089000 chr1D 77.477 111 21 3 4102 4208 416141491 416141381 3.560000e-06 63.9
2 TraesCS1D01G089000 chr1A 93.161 1857 85 23 1545 3369 74274386 74272540 0.000000e+00 2687.0
3 TraesCS1D01G089000 chr1A 90.210 715 53 11 1 713 74276807 74276108 0.000000e+00 917.0
4 TraesCS1D01G089000 chr1A 91.147 689 34 11 721 1387 74275067 74274384 0.000000e+00 909.0
5 TraesCS1D01G089000 chr1A 88.640 713 75 5 3 713 31908468 31907760 0.000000e+00 863.0
6 TraesCS1D01G089000 chr1A 92.933 566 37 2 2596 3159 74103698 74103134 0.000000e+00 821.0
7 TraesCS1D01G089000 chr1A 92.366 131 8 1 2470 2598 74103862 74103732 7.280000e-43 185.0
8 TraesCS1D01G089000 chr1A 90.476 105 7 2 3161 3265 74091592 74091491 7.430000e-28 135.0
9 TraesCS1D01G089000 chr1B 91.361 1690 74 22 2625 4261 117903022 117901352 0.000000e+00 2246.0
10 TraesCS1D01G089000 chr1B 92.735 991 58 7 1580 2558 117906163 117905175 0.000000e+00 1419.0
11 TraesCS1D01G089000 chr1B 86.667 540 48 9 869 1387 118354490 118355026 1.030000e-160 577.0
12 TraesCS1D01G089000 chr1B 84.359 390 38 8 1019 1387 117908020 117907633 1.130000e-95 361.0
13 TraesCS1D01G089000 chr1B 75.106 470 97 15 3382 3837 98961795 98961332 7.230000e-48 202.0
14 TraesCS1D01G089000 chr1B 90.132 152 13 2 872 1023 117921020 117920871 3.360000e-46 196.0
15 TraesCS1D01G089000 chr1B 100.000 77 0 0 2547 2623 117903514 117903438 4.440000e-30 143.0
16 TraesCS1D01G089000 chr1B 93.478 46 2 1 1546 1590 117907634 117907589 2.750000e-07 67.6
17 TraesCS1D01G089000 chr1B 93.478 46 2 1 1546 1590 118355025 118355070 2.750000e-07 67.6
18 TraesCS1D01G089000 chr2D 90.113 708 64 6 1 704 633256274 633256979 0.000000e+00 915.0
19 TraesCS1D01G089000 chr2D 90.113 708 64 6 1 704 633283629 633284334 0.000000e+00 915.0
20 TraesCS1D01G089000 chr2D 89.845 709 64 7 1 704 633234443 633235148 0.000000e+00 904.0
21 TraesCS1D01G089000 chr2D 87.356 174 17 4 1378 1547 109029994 109030166 1.210000e-45 195.0
22 TraesCS1D01G089000 chr5B 89.972 708 61 10 1 704 391808855 391809556 0.000000e+00 905.0
23 TraesCS1D01G089000 chr5B 87.836 707 79 7 1 704 659552533 659553235 0.000000e+00 822.0
24 TraesCS1D01G089000 chr5B 81.731 104 16 3 3837 3938 689992140 689992038 2.730000e-12 84.2
25 TraesCS1D01G089000 chr5B 80.583 103 19 1 3837 3938 30877321 30877219 1.270000e-10 78.7
26 TraesCS1D01G089000 chr5A 89.076 714 67 11 1 710 698628 697922 0.000000e+00 876.0
27 TraesCS1D01G089000 chr5A 79.082 392 64 13 3448 3826 150399411 150399025 1.970000e-63 254.0
28 TraesCS1D01G089000 chr6A 88.260 707 75 8 1 704 557403341 557404042 0.000000e+00 839.0
29 TraesCS1D01G089000 chr3B 87.283 173 17 3 1381 1549 697907972 697908143 4.350000e-45 193.0
30 TraesCS1D01G089000 chr7A 86.441 177 18 5 1375 1547 41424513 41424687 5.630000e-44 189.0
31 TraesCS1D01G089000 chr7A 82.524 103 17 1 3837 3938 466517643 466517541 5.870000e-14 89.8
32 TraesCS1D01G089000 chr3D 86.517 178 16 7 1386 1558 119734285 119734459 5.630000e-44 189.0
33 TraesCS1D01G089000 chr3D 83.333 78 7 4 4172 4248 325705586 325705514 2.750000e-07 67.6
34 TraesCS1D01G089000 chr7B 85.792 183 19 6 1383 1561 234899621 234899800 2.020000e-43 187.0
35 TraesCS1D01G089000 chr7B 85.000 60 9 0 4172 4231 725603797 725603738 1.280000e-05 62.1
36 TraesCS1D01G089000 chr7B 85.000 60 9 0 4172 4231 725639536 725639477 1.280000e-05 62.1
37 TraesCS1D01G089000 chrUn 85.556 180 21 3 1372 1547 349616439 349616261 2.620000e-42 183.0
38 TraesCS1D01G089000 chr7D 86.127 173 20 3 1386 1555 53632314 53632143 2.620000e-42 183.0
39 TraesCS1D01G089000 chr7D 81.250 96 14 3 4114 4205 632076861 632076766 1.640000e-09 75.0
40 TraesCS1D01G089000 chr2B 85.556 180 21 3 1372 1547 15721661 15721483 2.620000e-42 183.0
41 TraesCS1D01G089000 chr2B 85.556 180 21 3 1372 1547 15858222 15858044 2.620000e-42 183.0
42 TraesCS1D01G089000 chr5D 81.579 114 17 3 4096 4205 200488517 200488630 1.630000e-14 91.6
43 TraesCS1D01G089000 chr5D 81.928 83 6 5 4172 4245 326213464 326213546 1.280000e-05 62.1
44 TraesCS1D01G089000 chr4B 76.471 153 28 4 4099 4248 562372710 562372563 4.570000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G089000 chr1D 74337241 74341502 4261 False 7871.000000 7871 100.0000 1 4262 1 chr1D.!!$F1 4261
1 TraesCS1D01G089000 chr1A 74272540 74276807 4267 True 1504.333333 2687 91.5060 1 3369 3 chr1A.!!$R4 3368
2 TraesCS1D01G089000 chr1A 31907760 31908468 708 True 863.000000 863 88.6400 3 713 1 chr1A.!!$R1 710
3 TraesCS1D01G089000 chr1A 74103134 74103862 728 True 503.000000 821 92.6495 2470 3159 2 chr1A.!!$R3 689
4 TraesCS1D01G089000 chr1B 117901352 117908020 6668 True 847.320000 2246 92.3866 1019 4261 5 chr1B.!!$R3 3242
5 TraesCS1D01G089000 chr1B 118354490 118355070 580 False 322.300000 577 90.0725 869 1590 2 chr1B.!!$F1 721
6 TraesCS1D01G089000 chr2D 633256274 633256979 705 False 915.000000 915 90.1130 1 704 1 chr2D.!!$F3 703
7 TraesCS1D01G089000 chr2D 633283629 633284334 705 False 915.000000 915 90.1130 1 704 1 chr2D.!!$F4 703
8 TraesCS1D01G089000 chr2D 633234443 633235148 705 False 904.000000 904 89.8450 1 704 1 chr2D.!!$F2 703
9 TraesCS1D01G089000 chr5B 391808855 391809556 701 False 905.000000 905 89.9720 1 704 1 chr5B.!!$F1 703
10 TraesCS1D01G089000 chr5B 659552533 659553235 702 False 822.000000 822 87.8360 1 704 1 chr5B.!!$F2 703
11 TraesCS1D01G089000 chr5A 697922 698628 706 True 876.000000 876 89.0760 1 710 1 chr5A.!!$R1 709
12 TraesCS1D01G089000 chr6A 557403341 557404042 701 False 839.000000 839 88.2600 1 704 1 chr6A.!!$F1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 718 1.302993 GCACGCCCAACCCTTCTAA 60.303 57.895 0.00 0.0 0.00 2.10 F
1274 2343 1.000607 CAAGTGGTCTCGGTTCGAAGA 60.001 52.381 0.00 0.0 34.74 2.87 F
1658 4169 0.669077 ATACGGCGTCTCTGATGGTC 59.331 55.000 19.21 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 2653 0.307760 GCGTCAACAACCACAGGAAG 59.692 55.0 0.0 0.00 0.00 3.46 R
3192 7855 1.863155 TTGATCCCTGGGGGTGCTTC 61.863 60.0 14.0 1.78 44.74 3.86 R
3470 8158 2.030805 GTGCAGGGTTGTTGCTCTTTAG 60.031 50.0 0.0 0.00 42.02 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 176 7.463431 ACCGGCCTATAAAAATATATCAACCA 58.537 34.615 0.00 0.00 0.00 3.67
175 178 7.413657 CCGGCCTATAAAAATATATCAACCACG 60.414 40.741 0.00 0.00 0.00 4.94
177 180 7.094549 GGCCTATAAAAATATATCAACCACGCA 60.095 37.037 0.00 0.00 0.00 5.24
178 181 8.293867 GCCTATAAAAATATATCAACCACGCAA 58.706 33.333 0.00 0.00 0.00 4.85
247 253 3.255642 ACAATACAGTGCATGAAACCACC 59.744 43.478 0.00 0.00 32.48 4.61
372 381 3.940506 CTCCGTCGTCTCCCCCACT 62.941 68.421 0.00 0.00 0.00 4.00
379 388 1.602771 GTCTCCCCCACTAGCCAAC 59.397 63.158 0.00 0.00 0.00 3.77
480 489 4.507756 TCAGAGCCAAAAATATCGACATCG 59.492 41.667 0.00 0.00 41.45 3.84
704 718 1.302993 GCACGCCCAACCCTTCTAA 60.303 57.895 0.00 0.00 0.00 2.10
713 727 4.871822 CCCAACCCTTCTAATCAGGATTT 58.128 43.478 0.00 0.00 32.41 2.17
714 728 5.633854 GCCCAACCCTTCTAATCAGGATTTA 60.634 44.000 0.00 0.00 32.41 1.40
715 729 6.431722 CCCAACCCTTCTAATCAGGATTTAA 58.568 40.000 0.00 0.00 32.41 1.52
716 730 6.895204 CCCAACCCTTCTAATCAGGATTTAAA 59.105 38.462 0.00 0.00 32.41 1.52
717 731 7.398904 CCCAACCCTTCTAATCAGGATTTAAAA 59.601 37.037 0.00 0.00 32.41 1.52
718 732 8.251026 CCAACCCTTCTAATCAGGATTTAAAAC 58.749 37.037 0.00 0.00 32.41 2.43
753 1800 6.215845 GGACAGCTGAGAAGCAAAATTTTAA 58.784 36.000 23.35 0.00 37.25 1.52
759 1806 6.723298 TGAGAAGCAAAATTTTAAGGGACA 57.277 33.333 2.44 0.00 0.00 4.02
802 1850 2.937799 CAGAGTACTCTACCGACACTCC 59.062 54.545 24.75 0.00 37.98 3.85
855 1903 5.253991 AGGAAATCCTGCTTCTTCTTTCT 57.746 39.130 0.00 0.00 46.55 2.52
856 1904 5.639139 AGGAAATCCTGCTTCTTCTTTCTT 58.361 37.500 0.00 0.00 46.55 2.52
857 1905 6.073981 AGGAAATCCTGCTTCTTCTTTCTTT 58.926 36.000 0.00 0.00 46.55 2.52
858 1906 6.208402 AGGAAATCCTGCTTCTTCTTTCTTTC 59.792 38.462 0.00 0.00 46.55 2.62
981 2029 2.357034 GCACGACACACACCCGAT 60.357 61.111 0.00 0.00 0.00 4.18
1274 2343 1.000607 CAAGTGGTCTCGGTTCGAAGA 60.001 52.381 0.00 0.00 34.74 2.87
1328 2403 2.599645 GATGATGGCAGCACGACCCT 62.600 60.000 7.97 0.00 0.00 4.34
1363 2438 5.219739 ACAGTCCCATGTGATTATCTACCT 58.780 41.667 0.00 0.00 30.46 3.08
1387 2462 6.550163 TCCTGTTCCTGGGACTAGTATATAC 58.450 44.000 6.69 4.60 0.00 1.47
1388 2463 6.334774 TCCTGTTCCTGGGACTAGTATATACT 59.665 42.308 19.07 19.07 40.24 2.12
1389 2464 6.660094 CCTGTTCCTGGGACTAGTATATACTC 59.340 46.154 18.68 5.45 37.73 2.59
1390 2465 6.550163 TGTTCCTGGGACTAGTATATACTCC 58.450 44.000 18.68 13.74 37.73 3.85
1391 2466 5.793034 TCCTGGGACTAGTATATACTCCC 57.207 47.826 23.12 23.12 38.21 4.30
1392 2467 5.431343 TCCTGGGACTAGTATATACTCCCT 58.569 45.833 27.01 11.47 38.42 4.20
1393 2468 5.491800 TCCTGGGACTAGTATATACTCCCTC 59.508 48.000 27.01 17.11 38.42 4.30
1394 2469 5.340194 CCTGGGACTAGTATATACTCCCTCC 60.340 52.000 27.01 22.31 38.42 4.30
1395 2470 4.543337 TGGGACTAGTATATACTCCCTCCC 59.457 50.000 27.59 27.59 40.49 4.30
1396 2471 4.795165 GGGACTAGTATATACTCCCTCCCT 59.205 50.000 27.31 8.08 38.82 4.20
1397 2472 5.255916 GGGACTAGTATATACTCCCTCCCTT 59.744 48.000 27.31 7.55 38.82 3.95
1398 2473 6.240822 GGGACTAGTATATACTCCCTCCCTTT 60.241 46.154 27.31 7.01 38.82 3.11
1399 2474 6.664384 GGACTAGTATATACTCCCTCCCTTTG 59.336 46.154 18.68 0.00 37.73 2.77
1400 2475 7.176909 ACTAGTATATACTCCCTCCCTTTGT 57.823 40.000 18.68 0.00 37.73 2.83
1401 2476 8.298172 ACTAGTATATACTCCCTCCCTTTGTA 57.702 38.462 18.68 0.00 37.73 2.41
1402 2477 8.740512 ACTAGTATATACTCCCTCCCTTTGTAA 58.259 37.037 18.68 0.00 37.73 2.41
1403 2478 9.597681 CTAGTATATACTCCCTCCCTTTGTAAA 57.402 37.037 18.68 0.00 37.73 2.01
1411 2486 8.171337 ACTCCCTCCCTTTGTAAATATTAAGT 57.829 34.615 0.00 0.00 0.00 2.24
1412 2487 8.272889 ACTCCCTCCCTTTGTAAATATTAAGTC 58.727 37.037 0.00 0.00 0.00 3.01
1413 2488 8.401955 TCCCTCCCTTTGTAAATATTAAGTCT 57.598 34.615 0.00 0.00 0.00 3.24
1414 2489 8.842764 TCCCTCCCTTTGTAAATATTAAGTCTT 58.157 33.333 0.00 0.00 0.00 3.01
1415 2490 9.121658 CCCTCCCTTTGTAAATATTAAGTCTTC 57.878 37.037 0.00 0.00 0.00 2.87
1416 2491 9.121658 CCTCCCTTTGTAAATATTAAGTCTTCC 57.878 37.037 0.00 0.00 0.00 3.46
1417 2492 9.907229 CTCCCTTTGTAAATATTAAGTCTTCCT 57.093 33.333 0.00 0.00 0.00 3.36
1430 2505 4.473477 AGTCTTCCTAGGGATTTCAACG 57.527 45.455 9.46 0.00 0.00 4.10
1431 2506 4.094476 AGTCTTCCTAGGGATTTCAACGA 58.906 43.478 9.46 0.00 0.00 3.85
1432 2507 4.160626 AGTCTTCCTAGGGATTTCAACGAG 59.839 45.833 9.46 0.00 0.00 4.18
1433 2508 4.081586 GTCTTCCTAGGGATTTCAACGAGT 60.082 45.833 9.46 0.00 0.00 4.18
1434 2509 3.887621 TCCTAGGGATTTCAACGAGTG 57.112 47.619 9.46 0.00 0.00 3.51
1435 2510 3.437213 TCCTAGGGATTTCAACGAGTGA 58.563 45.455 9.46 0.00 0.00 3.41
1436 2511 3.194968 TCCTAGGGATTTCAACGAGTGAC 59.805 47.826 9.46 0.00 35.39 3.67
1437 2512 3.195825 CCTAGGGATTTCAACGAGTGACT 59.804 47.826 0.00 0.00 35.39 3.41
1438 2513 4.401519 CCTAGGGATTTCAACGAGTGACTA 59.598 45.833 0.00 0.00 35.39 2.59
1439 2514 5.069251 CCTAGGGATTTCAACGAGTGACTAT 59.931 44.000 0.00 0.00 35.39 2.12
1440 2515 6.264744 CCTAGGGATTTCAACGAGTGACTATA 59.735 42.308 0.00 0.00 35.39 1.31
1441 2516 6.732896 AGGGATTTCAACGAGTGACTATAT 57.267 37.500 0.00 0.00 35.39 0.86
1442 2517 7.834881 AGGGATTTCAACGAGTGACTATATA 57.165 36.000 0.00 0.00 35.39 0.86
1443 2518 7.659186 AGGGATTTCAACGAGTGACTATATAC 58.341 38.462 0.00 0.00 35.39 1.47
1444 2519 6.581542 GGGATTTCAACGAGTGACTATATACG 59.418 42.308 0.00 0.00 35.39 3.06
1445 2520 7.358066 GGATTTCAACGAGTGACTATATACGA 58.642 38.462 0.00 0.00 35.39 3.43
1446 2521 7.859377 GGATTTCAACGAGTGACTATATACGAA 59.141 37.037 0.00 0.00 35.39 3.85
1447 2522 8.783999 ATTTCAACGAGTGACTATATACGAAG 57.216 34.615 0.00 0.00 35.39 3.79
1448 2523 7.312657 TTCAACGAGTGACTATATACGAAGT 57.687 36.000 0.00 0.00 39.84 3.01
1449 2524 8.424274 TTCAACGAGTGACTATATACGAAGTA 57.576 34.615 0.00 0.00 41.66 2.24
1450 2525 8.882736 TTCAACGAGTGACTATATACGAAGTAA 58.117 33.333 0.00 0.00 41.03 2.24
1468 2543 9.924650 ACGAAGTAAAATAAGTGAATCTACACT 57.075 29.630 0.00 0.00 46.76 3.55
1508 2583 9.737427 ACGTACATTTGTATGTTTTCATTTGAA 57.263 25.926 9.29 0.00 45.54 2.69
1538 2613 9.211485 TCTAAAAAGACTTGTATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
1539 2614 9.211485 CTAAAAAGACTTGTATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
1540 2615 7.668525 AAAAGACTTGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
1541 2616 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1542 2617 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1543 2618 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1578 2653 2.159254 TGTTTGGCTCTGTGTTTCAAGC 60.159 45.455 0.00 0.00 33.08 4.01
1582 2657 1.268079 GGCTCTGTGTTTCAAGCTTCC 59.732 52.381 0.00 0.00 33.77 3.46
1658 4169 0.669077 ATACGGCGTCTCTGATGGTC 59.331 55.000 19.21 0.00 0.00 4.02
1678 4189 1.482593 CCAGGGATCACTGACAGGTAC 59.517 57.143 26.95 0.00 40.97 3.34
1722 4233 6.547141 TCAGATTTGTATGGGCCTCATTTAAG 59.453 38.462 4.53 0.00 37.30 1.85
1852 4366 6.385649 TTGGAAACAGTTTTACTTGCCTAG 57.614 37.500 0.00 0.00 44.54 3.02
1923 4437 4.199310 CCGGTGTTTCTTGTCCATCATAT 58.801 43.478 0.00 0.00 0.00 1.78
1994 4509 7.606858 ACAGGAAGATCATTCATATAATGCG 57.393 36.000 0.00 0.00 0.00 4.73
2000 4515 5.353400 AGATCATTCATATAATGCGCTGGTG 59.647 40.000 9.73 0.81 0.00 4.17
2034 4549 1.344953 TGCTGTGGTGGAGAACTGGT 61.345 55.000 0.00 0.00 0.00 4.00
2080 4595 3.070060 GCGTGAAGAGCGTTACCG 58.930 61.111 0.00 0.00 37.07 4.02
2093 4608 1.990563 CGTTACCGAAAGCAGACGAAT 59.009 47.619 0.00 0.00 35.63 3.34
2218 4733 9.431887 CAATTAAGGCTACTACAGAACTTGTTA 57.568 33.333 0.00 0.00 41.29 2.41
2225 4740 8.818057 GGCTACTACAGAACTTGTTAATGTATG 58.182 37.037 9.81 7.91 41.29 2.39
2343 4858 6.465439 AGGATATCACAGTGAAATACGACA 57.535 37.500 7.50 0.00 0.00 4.35
2350 4865 4.389992 CACAGTGAAATACGACAGCAGAAT 59.610 41.667 0.00 0.00 0.00 2.40
2379 4894 4.141855 ACTAAAGCAACACGTGTAATGC 57.858 40.909 29.35 29.35 39.06 3.56
2380 4895 2.415697 AAAGCAACACGTGTAATGCC 57.584 45.000 31.52 18.89 39.59 4.40
2448 4972 7.365741 CAAGCTGACAAATTTGATAGTGAACT 58.634 34.615 24.64 10.53 0.00 3.01
2943 7602 2.162681 AGAATGGCCCAAAGAAGAACG 58.837 47.619 0.00 0.00 0.00 3.95
3192 7855 6.806388 TGCTATGCTTGTACCAATGATATG 57.194 37.500 0.00 0.00 0.00 1.78
3202 7865 2.242043 CCAATGATATGAAGCACCCCC 58.758 52.381 0.00 0.00 0.00 5.40
3323 7986 1.819903 GCCCCGGTACAATAAGCAAAA 59.180 47.619 0.00 0.00 0.00 2.44
3324 7987 2.231721 GCCCCGGTACAATAAGCAAAAA 59.768 45.455 0.00 0.00 0.00 1.94
3370 8037 9.847224 ATACAAAGGGTACAGGTCTAAATATTG 57.153 33.333 0.00 0.00 34.07 1.90
3399 8087 4.946784 ACAACACTGAGTTTGAACAGAC 57.053 40.909 12.25 0.00 38.74 3.51
3405 8093 3.378427 ACTGAGTTTGAACAGACCAAAGC 59.622 43.478 0.00 0.00 37.54 3.51
3411 8099 0.586802 GAACAGACCAAAGCCGTGAC 59.413 55.000 0.00 0.00 0.00 3.67
3421 8109 1.566018 AAGCCGTGACGTGCTTTAGC 61.566 55.000 21.85 9.42 39.10 3.09
3432 8120 2.886382 GCTTTAGCATGGGCCTTCA 58.114 52.632 4.53 0.00 42.56 3.02
3433 8121 1.406903 GCTTTAGCATGGGCCTTCAT 58.593 50.000 4.53 0.00 42.56 2.57
3470 8158 4.243270 ACTGTAACTCGAAAGGCACATAC 58.757 43.478 0.00 0.00 0.00 2.39
3497 8185 0.179113 CAACAACCCTGCACACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
3549 8237 7.137490 TGTTTGATGAGCTCATACTTCAAAG 57.863 36.000 30.03 0.00 39.21 2.77
3556 8244 2.819608 GCTCATACTTCAAAGGGTTGCA 59.180 45.455 0.00 0.00 34.50 4.08
3650 8359 6.443995 AGTAACCACCATAACCAAGTTAGT 57.556 37.500 0.00 0.00 31.29 2.24
3652 8361 5.578157 AACCACCATAACCAAGTTAGTCT 57.422 39.130 0.00 0.00 31.29 3.24
3690 8399 4.835056 TCATAGCTAGCAATTCAGCCTCTA 59.165 41.667 18.83 0.00 38.61 2.43
3783 8492 5.530519 TTAAGCAGAATGTGAACGATGAC 57.469 39.130 0.00 0.00 39.31 3.06
3799 8508 3.058293 CGATGACCTGAGAGATCAGTAGC 60.058 52.174 4.68 0.00 36.06 3.58
3800 8509 2.660572 TGACCTGAGAGATCAGTAGCC 58.339 52.381 4.68 0.00 36.06 3.93
3887 8596 6.831976 AGAACTAGAGCAAAGGAAGAAAAGA 58.168 36.000 0.00 0.00 0.00 2.52
3899 8608 6.305693 AGGAAGAAAAGACAGTGAAAATCG 57.694 37.500 0.00 0.00 0.00 3.34
3916 8625 5.418310 AAATCGCACCATAAAGTTATCGG 57.582 39.130 0.00 0.00 0.00 4.18
3943 8652 1.933853 CGAAGAAAATGACTAGGCCGG 59.066 52.381 0.00 0.00 0.00 6.13
3949 8658 0.835276 AATGACTAGGCCGGGGTTAC 59.165 55.000 2.18 0.00 0.00 2.50
3985 8694 3.565764 TTGAAGATGACTAGGGCATGG 57.434 47.619 5.24 0.00 0.00 3.66
4031 8740 3.706594 AGATGACCATAGTGAACCGATGT 59.293 43.478 0.00 0.00 0.00 3.06
4042 8751 3.485743 GTGAACCGATGTGAAAGCAAAAC 59.514 43.478 0.00 0.00 0.00 2.43
4043 8752 3.129462 TGAACCGATGTGAAAGCAAAACA 59.871 39.130 0.00 0.00 0.00 2.83
4046 8755 3.862845 ACCGATGTGAAAGCAAAACAAAC 59.137 39.130 0.00 0.00 0.00 2.93
4047 8756 4.111916 CCGATGTGAAAGCAAAACAAACT 58.888 39.130 0.00 0.00 0.00 2.66
4048 8757 4.026640 CCGATGTGAAAGCAAAACAAACTG 60.027 41.667 0.00 0.00 0.00 3.16
4049 8758 4.026640 CGATGTGAAAGCAAAACAAACTGG 60.027 41.667 0.00 0.00 0.00 4.00
4100 8810 5.987777 TTAGACGAGTGACAGCTATAGAC 57.012 43.478 3.21 0.00 0.00 2.59
4152 8864 2.354805 GGAATGTGTCCTCCCACTGTAC 60.355 54.545 0.00 0.00 43.98 2.90
4162 8874 1.346395 TCCCACTGTACGAACATTGCT 59.654 47.619 0.00 0.00 35.52 3.91
4163 8875 2.563620 TCCCACTGTACGAACATTGCTA 59.436 45.455 0.00 0.00 35.52 3.49
4170 8882 7.490079 CCACTGTACGAACATTGCTATAAAGTA 59.510 37.037 0.00 0.00 35.52 2.24
4213 8925 4.386711 AGCACCAGTGTAAGACTTAAACC 58.613 43.478 11.30 0.00 29.75 3.27
4231 8943 0.557729 CCTTGCTGGGTTGGGGATAT 59.442 55.000 0.00 0.00 0.00 1.63
4243 8956 4.450265 GGTTGGGGATATACTGTCCTCCTA 60.450 50.000 0.00 0.00 35.23 2.94
4255 8968 2.781174 TGTCCTCCTAAACAGGTTGGTT 59.219 45.455 0.00 0.00 32.20 3.67
4257 8970 3.050089 TCCTCCTAAACAGGTTGGTTCA 58.950 45.455 0.00 0.00 32.20 3.18
4261 8974 1.877443 CTAAACAGGTTGGTTCACCCG 59.123 52.381 0.00 0.00 37.58 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 6.393990 CAAAATTGAATACCCCAATCGAACA 58.606 36.000 0.00 0.00 33.51 3.18
70 72 5.810074 CCAAAATTGAATACCCCAATCGAAC 59.190 40.000 0.00 0.00 33.51 3.95
106 108 4.806640 AATCGTTGGCCTGATCAAAATT 57.193 36.364 3.32 0.00 0.00 1.82
173 176 0.321653 GGTGATGGGAGTCTTTGCGT 60.322 55.000 0.00 0.00 0.00 5.24
175 178 2.501723 TCTAGGTGATGGGAGTCTTTGC 59.498 50.000 0.00 0.00 0.00 3.68
177 180 5.843019 TTTTCTAGGTGATGGGAGTCTTT 57.157 39.130 0.00 0.00 0.00 2.52
178 181 5.843019 TTTTTCTAGGTGATGGGAGTCTT 57.157 39.130 0.00 0.00 0.00 3.01
280 287 7.225538 GCTATGATTATGTGCTATCCGCTAATT 59.774 37.037 0.00 0.00 40.11 1.40
372 381 9.432982 AAATTGATGGAATATTTAGGTTGGCTA 57.567 29.630 0.00 0.00 0.00 3.93
520 533 6.604735 ATCAAATCGGTGTTATTAGCTGTC 57.395 37.500 0.00 0.00 0.00 3.51
704 718 3.621715 GCGAGTCCGTTTTAAATCCTGAT 59.378 43.478 0.00 0.00 38.24 2.90
736 1783 6.723298 TGTCCCTTAAAATTTTGCTTCTCA 57.277 33.333 13.76 4.10 0.00 3.27
753 1800 1.806496 TGGCATATGTAGCTGTCCCT 58.194 50.000 4.29 0.00 0.00 4.20
759 1806 2.289631 TGCGCTAATGGCATATGTAGCT 60.290 45.455 21.19 0.00 41.91 3.32
816 1864 2.672996 TTTCGGAAGCAGGCTGGC 60.673 61.111 17.64 8.72 0.00 4.85
817 1865 2.042831 CCTTTCGGAAGCAGGCTGG 61.043 63.158 17.64 0.00 0.00 4.85
864 1912 7.996644 ACAGAAGTAGGATTAGTTTTTGGTTCA 59.003 33.333 0.00 0.00 0.00 3.18
987 2035 4.161295 TCCATGCCGAAGCCTCCG 62.161 66.667 0.00 0.00 38.69 4.63
1151 2218 1.583495 CTCTGCGTGGTGACGGACTA 61.583 60.000 0.00 0.00 46.20 2.59
1221 2290 3.345808 GCTTTGCGTGCCGACTCA 61.346 61.111 0.00 0.00 0.00 3.41
1363 2438 5.681494 ATATACTAGTCCCAGGAACAGGA 57.319 43.478 0.00 0.00 37.04 3.86
1387 2462 8.495260 AGACTTAATATTTACAAAGGGAGGGAG 58.505 37.037 0.00 0.00 0.00 4.30
1388 2463 8.401955 AGACTTAATATTTACAAAGGGAGGGA 57.598 34.615 0.00 0.00 0.00 4.20
1389 2464 9.121658 GAAGACTTAATATTTACAAAGGGAGGG 57.878 37.037 0.00 0.00 0.00 4.30
1390 2465 9.121658 GGAAGACTTAATATTTACAAAGGGAGG 57.878 37.037 0.00 0.00 0.00 4.30
1391 2466 9.907229 AGGAAGACTTAATATTTACAAAGGGAG 57.093 33.333 0.00 0.00 0.00 4.30
1404 2479 8.202137 CGTTGAAATCCCTAGGAAGACTTAATA 58.798 37.037 11.48 0.00 34.34 0.98
1405 2480 7.048512 CGTTGAAATCCCTAGGAAGACTTAAT 58.951 38.462 11.48 0.00 34.34 1.40
1406 2481 6.211986 TCGTTGAAATCCCTAGGAAGACTTAA 59.788 38.462 11.48 0.00 34.34 1.85
1407 2482 5.718130 TCGTTGAAATCCCTAGGAAGACTTA 59.282 40.000 11.48 0.00 34.34 2.24
1408 2483 4.530946 TCGTTGAAATCCCTAGGAAGACTT 59.469 41.667 11.48 0.00 34.34 3.01
1409 2484 4.094476 TCGTTGAAATCCCTAGGAAGACT 58.906 43.478 11.48 0.00 34.34 3.24
1410 2485 4.081586 ACTCGTTGAAATCCCTAGGAAGAC 60.082 45.833 11.48 0.00 34.34 3.01
1411 2486 4.081642 CACTCGTTGAAATCCCTAGGAAGA 60.082 45.833 11.48 0.00 34.34 2.87
1412 2487 4.081642 TCACTCGTTGAAATCCCTAGGAAG 60.082 45.833 11.48 0.00 34.34 3.46
1413 2488 3.835978 TCACTCGTTGAAATCCCTAGGAA 59.164 43.478 11.48 0.00 34.34 3.36
1414 2489 3.194968 GTCACTCGTTGAAATCCCTAGGA 59.805 47.826 11.48 0.00 35.39 2.94
1415 2490 3.195825 AGTCACTCGTTGAAATCCCTAGG 59.804 47.826 0.06 0.06 35.39 3.02
1416 2491 4.457834 AGTCACTCGTTGAAATCCCTAG 57.542 45.455 0.00 0.00 35.39 3.02
1417 2492 7.834881 ATATAGTCACTCGTTGAAATCCCTA 57.165 36.000 0.00 0.00 35.39 3.53
1418 2493 6.732896 ATATAGTCACTCGTTGAAATCCCT 57.267 37.500 0.00 0.00 35.39 4.20
1419 2494 6.581542 CGTATATAGTCACTCGTTGAAATCCC 59.418 42.308 0.00 0.00 35.39 3.85
1420 2495 7.358066 TCGTATATAGTCACTCGTTGAAATCC 58.642 38.462 0.00 0.00 35.39 3.01
1421 2496 8.778141 TTCGTATATAGTCACTCGTTGAAATC 57.222 34.615 0.00 0.00 35.39 2.17
1422 2497 8.404000 ACTTCGTATATAGTCACTCGTTGAAAT 58.596 33.333 0.00 0.00 35.39 2.17
1423 2498 7.755591 ACTTCGTATATAGTCACTCGTTGAAA 58.244 34.615 0.00 0.00 35.39 2.69
1424 2499 7.312657 ACTTCGTATATAGTCACTCGTTGAA 57.687 36.000 0.00 0.00 35.39 2.69
1425 2500 6.915544 ACTTCGTATATAGTCACTCGTTGA 57.084 37.500 0.00 0.00 0.00 3.18
1426 2501 9.494479 TTTTACTTCGTATATAGTCACTCGTTG 57.506 33.333 0.00 0.00 0.00 4.10
1442 2517 9.924650 AGTGTAGATTCACTTATTTTACTTCGT 57.075 29.630 0.00 0.00 44.92 3.85
1482 2557 9.737427 TTCAAATGAAAACATACAAATGTACGT 57.263 25.926 0.00 0.00 45.79 3.57
1512 2587 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
1513 2588 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
1514 2589 9.211485 CTCCGTTCCTAAATACAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1515 2590 7.174426 CCTCCGTTCCTAAATACAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
1516 2591 6.653740 CCTCCGTTCCTAAATACAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
1517 2592 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1518 2593 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1519 2594 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1520 2595 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1521 2596 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
1522 2597 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
1523 2598 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
1524 2599 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
1525 2600 5.774184 AGATACTCCCTCCGTTCCTAAATAC 59.226 44.000 0.00 0.00 0.00 1.89
1526 2601 5.961897 AGATACTCCCTCCGTTCCTAAATA 58.038 41.667 0.00 0.00 0.00 1.40
1527 2602 4.817286 AGATACTCCCTCCGTTCCTAAAT 58.183 43.478 0.00 0.00 0.00 1.40
1528 2603 4.261411 AGATACTCCCTCCGTTCCTAAA 57.739 45.455 0.00 0.00 0.00 1.85
1529 2604 3.967467 AGATACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
1530 2605 3.967467 AAGATACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
1531 2606 2.850695 AAGATACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
1532 2607 3.908643 AAAAGATACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
1533 2608 5.975282 AGTAAAAAGATACTCCCTCCGTTC 58.025 41.667 0.00 0.00 30.26 3.95
1534 2609 6.171213 CAAGTAAAAAGATACTCCCTCCGTT 58.829 40.000 0.00 0.00 35.09 4.44
1535 2610 5.247792 ACAAGTAAAAAGATACTCCCTCCGT 59.752 40.000 0.00 0.00 35.09 4.69
1536 2611 5.731591 ACAAGTAAAAAGATACTCCCTCCG 58.268 41.667 0.00 0.00 35.09 4.63
1537 2612 7.094334 CCAAACAAGTAAAAAGATACTCCCTCC 60.094 40.741 0.00 0.00 35.09 4.30
1538 2613 7.575155 GCCAAACAAGTAAAAAGATACTCCCTC 60.575 40.741 0.00 0.00 35.09 4.30
1539 2614 6.208797 GCCAAACAAGTAAAAAGATACTCCCT 59.791 38.462 0.00 0.00 35.09 4.20
1540 2615 6.208797 AGCCAAACAAGTAAAAAGATACTCCC 59.791 38.462 0.00 0.00 35.09 4.30
1541 2616 7.175119 AGAGCCAAACAAGTAAAAAGATACTCC 59.825 37.037 0.00 0.00 35.09 3.85
1542 2617 8.017946 CAGAGCCAAACAAGTAAAAAGATACTC 58.982 37.037 0.00 0.00 35.09 2.59
1543 2618 7.502561 ACAGAGCCAAACAAGTAAAAAGATACT 59.497 33.333 0.00 0.00 37.73 2.12
1578 2653 0.307760 GCGTCAACAACCACAGGAAG 59.692 55.000 0.00 0.00 0.00 3.46
1582 2657 1.229428 ATCTGCGTCAACAACCACAG 58.771 50.000 0.00 0.00 32.39 3.66
1658 4169 1.482593 GTACCTGTCAGTGATCCCTGG 59.517 57.143 5.30 0.00 33.14 4.45
1708 4219 1.287442 TGCATCCTTAAATGAGGCCCA 59.713 47.619 0.00 0.00 38.68 5.36
1836 4350 6.560253 AATGACACTAGGCAAGTAAAACTG 57.440 37.500 0.00 0.00 35.76 3.16
1876 4390 6.118170 CAGATTACTCACATTCAGGGAACAT 58.882 40.000 0.00 0.00 0.00 2.71
1923 4437 6.821665 GGATAACTGGTTCAGCACATAACTAA 59.178 38.462 0.00 0.00 34.37 2.24
1994 4509 2.301346 CCCATAAAGTCATCCACCAGC 58.699 52.381 0.00 0.00 0.00 4.85
2000 4515 2.684881 CACAGCACCCATAAAGTCATCC 59.315 50.000 0.00 0.00 0.00 3.51
2034 4549 1.597854 CGAAGTTGGCTGGCTCACA 60.598 57.895 2.00 0.00 0.00 3.58
2218 4733 9.490379 GATAAGGTTTTATCGGAGTCATACATT 57.510 33.333 0.00 0.00 36.76 2.71
2225 4740 4.750598 GGCAGATAAGGTTTTATCGGAGTC 59.249 45.833 10.29 0.00 46.39 3.36
2343 4858 8.792633 TGTTGCTTTAGTAATACAAATTCTGCT 58.207 29.630 0.00 0.00 0.00 4.24
2350 4865 7.249186 ACACGTGTTGCTTTAGTAATACAAA 57.751 32.000 17.22 0.00 32.95 2.83
2379 4894 6.618287 TCTGAATATGGATTTTAGTTGCGG 57.382 37.500 0.00 0.00 0.00 5.69
2380 4895 8.909708 TTTTCTGAATATGGATTTTAGTTGCG 57.090 30.769 0.00 0.00 0.00 4.85
2423 4947 7.365741 AGTTCACTATCAAATTTGTCAGCTTG 58.634 34.615 17.47 10.59 0.00 4.01
2482 5006 7.377766 TGTGCTATGTTATCTTTGGTTTCTC 57.622 36.000 0.00 0.00 0.00 2.87
2943 7602 5.403466 CAGCAAAAACAAGCACTTTAGGATC 59.597 40.000 0.00 0.00 0.00 3.36
3159 7822 8.722480 TGGTACAAGCATAGCAATGATATATC 57.278 34.615 5.73 5.73 31.81 1.63
3192 7855 1.863155 TTGATCCCTGGGGGTGCTTC 61.863 60.000 14.00 1.78 44.74 3.86
3202 7865 3.558746 CCTGCCTTATAGCTTGATCCCTG 60.559 52.174 0.00 0.00 0.00 4.45
3370 8037 8.609176 TGTTCAAACTCAGTGTTGTAGATTTAC 58.391 33.333 0.00 0.00 39.13 2.01
3374 8041 6.480320 GTCTGTTCAAACTCAGTGTTGTAGAT 59.520 38.462 0.00 0.00 39.13 1.98
3376 8043 5.006746 GGTCTGTTCAAACTCAGTGTTGTAG 59.993 44.000 0.00 0.00 39.13 2.74
3379 8046 3.689161 TGGTCTGTTCAAACTCAGTGTTG 59.311 43.478 0.00 0.00 39.13 3.33
3380 8047 3.950397 TGGTCTGTTCAAACTCAGTGTT 58.050 40.909 0.00 0.00 41.29 3.32
3381 8048 3.627395 TGGTCTGTTCAAACTCAGTGT 57.373 42.857 0.00 0.00 33.89 3.55
3383 8050 3.378427 GCTTTGGTCTGTTCAAACTCAGT 59.622 43.478 0.00 0.00 33.89 3.41
3399 8087 2.972505 AGCACGTCACGGCTTTGG 60.973 61.111 0.35 0.00 36.92 3.28
3421 8109 4.805192 CGAATTTGTTTATGAAGGCCCATG 59.195 41.667 0.00 0.00 0.00 3.66
3432 8120 8.007716 CGAGTTACAGTTGTCGAATTTGTTTAT 58.992 33.333 0.00 0.00 34.28 1.40
3433 8121 7.222417 TCGAGTTACAGTTGTCGAATTTGTTTA 59.778 33.333 0.00 0.00 38.44 2.01
3470 8158 2.030805 GTGCAGGGTTGTTGCTCTTTAG 60.031 50.000 0.00 0.00 42.02 1.85
3508 8196 5.073428 TCAAACATATTGGTGTTGGTGCTA 58.927 37.500 0.00 0.00 41.22 3.49
3517 8205 5.823209 TGAGCTCATCAAACATATTGGTG 57.177 39.130 13.74 0.00 34.02 4.17
3650 8359 4.923871 GCTATGACTCTTTTGACGACAAGA 59.076 41.667 0.00 0.00 37.32 3.02
3652 8361 4.883083 AGCTATGACTCTTTTGACGACAA 58.117 39.130 0.00 0.00 0.00 3.18
3733 8442 6.877611 TTTTTCTTGGTGGTTCTCTCATAC 57.122 37.500 0.00 0.00 0.00 2.39
3768 8477 3.849911 TCTCAGGTCATCGTTCACATTC 58.150 45.455 0.00 0.00 0.00 2.67
3799 8508 2.404215 CCTATTCGAACGCTACATGGG 58.596 52.381 0.00 0.00 0.00 4.00
3800 8509 1.792949 GCCTATTCGAACGCTACATGG 59.207 52.381 0.00 0.00 0.00 3.66
3887 8596 4.518970 ACTTTATGGTGCGATTTTCACTGT 59.481 37.500 0.00 0.00 34.97 3.55
3899 8608 4.873827 TGTTCTCCGATAACTTTATGGTGC 59.126 41.667 0.00 0.00 0.00 5.01
3916 8625 5.163943 GCCTAGTCATTTTCTTCGTGTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
3962 8671 4.891756 CCATGCCCTAGTCATCTTCAATTT 59.108 41.667 0.00 0.00 0.00 1.82
3963 8672 4.079558 ACCATGCCCTAGTCATCTTCAATT 60.080 41.667 0.00 0.00 0.00 2.32
3965 8674 2.846206 ACCATGCCCTAGTCATCTTCAA 59.154 45.455 0.00 0.00 0.00 2.69
3966 8675 2.481441 ACCATGCCCTAGTCATCTTCA 58.519 47.619 0.00 0.00 0.00 3.02
3967 8676 3.567478 AACCATGCCCTAGTCATCTTC 57.433 47.619 0.00 0.00 0.00 2.87
3968 8677 4.042187 GGATAACCATGCCCTAGTCATCTT 59.958 45.833 0.00 0.00 35.97 2.40
3969 8678 3.584848 GGATAACCATGCCCTAGTCATCT 59.415 47.826 0.00 0.00 35.97 2.90
3970 8679 3.307762 GGGATAACCATGCCCTAGTCATC 60.308 52.174 0.00 0.00 36.67 2.92
3971 8680 2.644798 GGGATAACCATGCCCTAGTCAT 59.355 50.000 0.00 0.00 36.67 3.06
3972 8681 2.054799 GGGATAACCATGCCCTAGTCA 58.945 52.381 0.00 0.00 36.67 3.41
3973 8682 2.861147 GGGATAACCATGCCCTAGTC 57.139 55.000 0.00 0.00 36.67 2.59
3998 8707 7.685481 TCACTATGGTCATCTTCCTTGTTTTA 58.315 34.615 0.00 0.00 0.00 1.52
4002 8711 5.491982 GTTCACTATGGTCATCTTCCTTGT 58.508 41.667 0.00 0.00 0.00 3.16
4003 8712 4.878397 GGTTCACTATGGTCATCTTCCTTG 59.122 45.833 0.00 0.00 0.00 3.61
4007 8716 4.386867 TCGGTTCACTATGGTCATCTTC 57.613 45.455 0.00 0.00 0.00 2.87
4011 8720 3.450817 TCACATCGGTTCACTATGGTCAT 59.549 43.478 0.00 0.00 0.00 3.06
4031 8740 2.999355 GTGCCAGTTTGTTTTGCTTTCA 59.001 40.909 0.00 0.00 0.00 2.69
4042 8751 7.151308 TCCTGTTTATATTTTGTGCCAGTTTG 58.849 34.615 0.00 0.00 0.00 2.93
4043 8752 7.296628 TCCTGTTTATATTTTGTGCCAGTTT 57.703 32.000 0.00 0.00 0.00 2.66
4046 8755 7.502226 TCCTATCCTGTTTATATTTTGTGCCAG 59.498 37.037 0.00 0.00 0.00 4.85
4047 8756 7.350382 TCCTATCCTGTTTATATTTTGTGCCA 58.650 34.615 0.00 0.00 0.00 4.92
4048 8757 7.817418 TCCTATCCTGTTTATATTTTGTGCC 57.183 36.000 0.00 0.00 0.00 5.01
4100 8810 3.017442 TGAGGAGTCTATGGTGACTTCG 58.983 50.000 0.00 0.00 46.11 3.79
4170 8882 6.311200 GTGCTCGCATTTTCTGGATTTATTTT 59.689 34.615 0.00 0.00 0.00 1.82
4213 8925 2.443255 AGTATATCCCCAACCCAGCAAG 59.557 50.000 0.00 0.00 0.00 4.01
4224 8936 5.152934 TGTTTAGGAGGACAGTATATCCCC 58.847 45.833 0.00 0.00 36.86 4.81
4243 8956 2.801859 CGGGTGAACCAACCTGTTT 58.198 52.632 1.16 0.00 39.46 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.