AutoCloner

Multiple sequence alignment - TraesCS1D01G088900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G088900	chr1D	100.000	3102	0	0	1	3102	74295780	74292679	0.000000e+00	5729
1	TraesCS1D01G088900	chr1D	93.660	899	49	8	3	896	463250011	463250906	0.000000e+00	1338
2	TraesCS1D01G088900	chr1D	93.617	893	53	4	3	892	489982286	489983177	0.000000e+00	1330
3	TraesCS1D01G088900	chr4A	95.455	968	43	1	2136	3102	486298186	486299153	0.000000e+00	1543
4	TraesCS1D01G088900	chr4A	96.309	867	31	1	2136	3001	722378585	722377719	0.000000e+00	1423
5	TraesCS1D01G088900	chr6D	95.150	969	43	4	2136	3102	128083965	128082999	0.000000e+00	1526
6	TraesCS1D01G088900	chr4B	92.864	1037	55	7	2084	3102	591233527	591234562	0.000000e+00	1487
7	TraesCS1D01G088900	chr7D	95.551	899	37	3	1	897	554422457	554421560	0.000000e+00	1435
8	TraesCS1D01G088900	chr7D	93.960	894	50	4	1	891	56286325	56285433	0.000000e+00	1349
9	TraesCS1D01G088900	chr7D	93.624	894	53	4	3	892	568365890	568364997	0.000000e+00	1332
10	TraesCS1D01G088900	chr2D	92.459	968	72	1	2136	3102	531629738	531630705	0.000000e+00	1382
11	TraesCS1D01G088900	chr2D	94.363	887	42	8	3	886	539164426	539165307	0.000000e+00	1354
12	TraesCS1D01G088900	chr4D	94.098	898	44	9	3	895	35124603	35123710	0.000000e+00	1356
13	TraesCS1D01G088900	chr4D	94.078	895	48	5	1	892	40799051	40799943	0.000000e+00	1354
14	TraesCS1D01G088900	chr6A	91.942	968	75	3	2136	3102	180928119	180929084	0.000000e+00	1352
15	TraesCS1D01G088900	chr5A	91.632	968	80	1	2136	3102	122127916	122126949	0.000000e+00	1338
16	TraesCS1D01G088900	chrUn	93.430	898	51	8	3	896	45207542	45208435	0.000000e+00	1325
17	TraesCS1D01G088900	chr1B	94.208	846	33	8	1058	1891	118090675	118091516	0.000000e+00	1277
18	TraesCS1D01G088900	chr1B	94.208	846	33	8	1058	1891	118175446	118174605	0.000000e+00	1277
19	TraesCS1D01G088900	chr1B	91.441	923	77	2	2136	3057	289096002	289096923	0.000000e+00	1266
20	TraesCS1D01G088900	chr1B	87.943	141	6	3	1962	2091	118165927	118165787	4.140000e-34	156
21	TraesCS1D01G088900	chr1B	87.234	141	7	3	1962	2091	118100203	118100343	1.930000e-32	150
22	TraesCS1D01G088900	chr6B	91.533	874	72	2	2230	3102	546086367	546087239	0.000000e+00	1203
23	TraesCS1D01G088900	chr1A	94.238	538	31	0	1192	1729	74320474	74321011	0.000000e+00	822
24	TraesCS1D01G088900	chr1A	96.635	208	4	2	932	1138	74320266	74320471	2.960000e-90	342
25	TraesCS1D01G088900	chr1A	91.237	194	9	4	1721	1912	74326518	74326705	1.100000e-64	257
26	TraesCS1D01G088900	chr1A	86.700	203	15	3	1900	2091	74327376	74327577	6.740000e-52	215

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G088900	chr1D	74292679	74295780	3101	True	5729	5729	100.0000	1	3102	1	chr1D.!!$R1	3101
1	TraesCS1D01G088900	chr1D	463250011	463250906	895	False	1338	1338	93.6600	3	896	1	chr1D.!!$F1	893
2	TraesCS1D01G088900	chr1D	489982286	489983177	891	False	1330	1330	93.6170	3	892	1	chr1D.!!$F2	889
3	TraesCS1D01G088900	chr4A	486298186	486299153	967	False	1543	1543	95.4550	2136	3102	1	chr4A.!!$F1	966
4	TraesCS1D01G088900	chr4A	722377719	722378585	866	True	1423	1423	96.3090	2136	3001	1	chr4A.!!$R1	865
5	TraesCS1D01G088900	chr6D	128082999	128083965	966	True	1526	1526	95.1500	2136	3102	1	chr6D.!!$R1	966
6	TraesCS1D01G088900	chr4B	591233527	591234562	1035	False	1487	1487	92.8640	2084	3102	1	chr4B.!!$F1	1018
7	TraesCS1D01G088900	chr7D	554421560	554422457	897	True	1435	1435	95.5510	1	897	1	chr7D.!!$R2	896
8	TraesCS1D01G088900	chr7D	56285433	56286325	892	True	1349	1349	93.9600	1	891	1	chr7D.!!$R1	890
9	TraesCS1D01G088900	chr7D	568364997	568365890	893	True	1332	1332	93.6240	3	892	1	chr7D.!!$R3	889
10	TraesCS1D01G088900	chr2D	531629738	531630705	967	False	1382	1382	92.4590	2136	3102	1	chr2D.!!$F1	966
11	TraesCS1D01G088900	chr2D	539164426	539165307	881	False	1354	1354	94.3630	3	886	1	chr2D.!!$F2	883
12	TraesCS1D01G088900	chr4D	35123710	35124603	893	True	1356	1356	94.0980	3	895	1	chr4D.!!$R1	892
13	TraesCS1D01G088900	chr4D	40799051	40799943	892	False	1354	1354	94.0780	1	892	1	chr4D.!!$F1	891
14	TraesCS1D01G088900	chr6A	180928119	180929084	965	False	1352	1352	91.9420	2136	3102	1	chr6A.!!$F1	966
15	TraesCS1D01G088900	chr5A	122126949	122127916	967	True	1338	1338	91.6320	2136	3102	1	chr5A.!!$R1	966
16	TraesCS1D01G088900	chrUn	45207542	45208435	893	False	1325	1325	93.4300	3	896	1	chrUn.!!$F1	893
17	TraesCS1D01G088900	chr1B	118090675	118091516	841	False	1277	1277	94.2080	1058	1891	1	chr1B.!!$F1	833
18	TraesCS1D01G088900	chr1B	118174605	118175446	841	True	1277	1277	94.2080	1058	1891	1	chr1B.!!$R2	833
19	TraesCS1D01G088900	chr1B	289096002	289096923	921	False	1266	1266	91.4410	2136	3057	1	chr1B.!!$F3	921
20	TraesCS1D01G088900	chr6B	546086367	546087239	872	False	1203	1203	91.5330	2230	3102	1	chr6B.!!$F1	872
21	TraesCS1D01G088900	chr1A	74320266	74321011	745	False	582	822	95.4365	932	1729	2	chr1A.!!$F1	797
22	TraesCS1D01G088900	chr1A	74326518	74327577	1059	False	236	257	88.9685	1721	2091	2	chr1A.!!$F2	370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
921	935	0.179468	AGCCGTGGTGTAGTGTTTGT	59.821	50.0	0.0	0.0	0.0	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2391	3128	1.899142	GGCCTATTCCCTGCACAAAAA	59.101	47.619	0.0	0.0	0.0	1.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	133	2.425124	CCAGTTTTCACGCACGCG	60.425	61.111	10.36	10.36	46.03	6.01
129	134	2.623718	CAGTTTTCACGCACGCGA	59.376	55.556	19.66	0.00	42.83	5.87
180	185	4.003788	CCACACGCCCGTCTCCTT	62.004	66.667	0.00	0.00	0.00	3.36
219	224	1.338973	CAGTTGCCATGTGTTTCTGCT	59.661	47.619	0.00	0.00	0.00	4.24
283	290	4.685165	GTCAACTCTCTTTTACCCGAGTTC	59.315	45.833	0.00	0.00	42.86	3.01
479	490	2.051692	AGTGTTAGTGGGTGGCAACTA	58.948	47.619	0.97	0.00	37.61	2.24
705	718	1.079197	TACGAGGCCTGACGTACGA	60.079	57.895	24.41	3.59	42.61	3.43
735	748	1.191647	GCGTTATCTATTTCGCCCACG	59.808	52.381	0.00	0.00	42.33	4.94
762	776	0.395862	GTGTGAGAGGATCGGGAGGA	60.396	60.000	0.00	0.00	42.67	3.71
833	847	4.202524	TGTGGGCTGTTCCTTTTATACACT	60.203	41.667	0.00	0.00	34.39	3.55
835	849	6.120220	GTGGGCTGTTCCTTTTATACACTAT	58.880	40.000	0.00	0.00	34.39	2.12
858	872	3.900601	ACAAAATATGTGGGCAAACTCCA	59.099	39.130	0.00	0.00	41.93	3.86
863	877	2.969821	TGTGGGCAAACTCCATAACT	57.030	45.000	0.00	0.00	36.58	2.24
897	911	3.849708	GGCATTTATCGACGTCCAAAAAC	59.150	43.478	10.58	5.19	0.00	2.43
898	912	4.379082	GGCATTTATCGACGTCCAAAAACT	60.379	41.667	10.58	0.00	0.00	2.66
899	913	5.163834	GGCATTTATCGACGTCCAAAAACTA	60.164	40.000	10.58	0.00	0.00	2.24
900	914	6.457799	GGCATTTATCGACGTCCAAAAACTAT	60.458	38.462	10.58	0.00	0.00	2.12
901	915	6.410914	GCATTTATCGACGTCCAAAAACTATG	59.589	38.462	10.58	5.28	0.00	2.23
902	916	7.675403	GCATTTATCGACGTCCAAAAACTATGA	60.675	37.037	10.58	0.00	0.00	2.15
903	917	6.880822	TTATCGACGTCCAAAAACTATGAG	57.119	37.500	10.58	0.00	0.00	2.90
904	918	2.991190	TCGACGTCCAAAAACTATGAGC	59.009	45.455	10.58	0.00	0.00	4.26
905	919	2.093783	CGACGTCCAAAAACTATGAGCC	59.906	50.000	10.58	0.00	0.00	4.70
906	920	2.073816	ACGTCCAAAAACTATGAGCCG	58.926	47.619	0.00	0.00	0.00	5.52
907	921	2.073816	CGTCCAAAAACTATGAGCCGT	58.926	47.619	0.00	0.00	0.00	5.68
908	922	2.159707	CGTCCAAAAACTATGAGCCGTG	60.160	50.000	0.00	0.00	0.00	4.94
909	923	2.161609	GTCCAAAAACTATGAGCCGTGG	59.838	50.000	0.00	0.00	0.00	4.94
910	924	2.159382	CCAAAAACTATGAGCCGTGGT	58.841	47.619	0.00	0.00	0.00	4.16
911	925	2.095263	CCAAAAACTATGAGCCGTGGTG	60.095	50.000	0.00	0.00	0.00	4.17
912	926	2.552315	CAAAAACTATGAGCCGTGGTGT	59.448	45.455	0.00	0.00	0.00	4.16
913	927	3.688694	AAAACTATGAGCCGTGGTGTA	57.311	42.857	0.00	0.00	0.00	2.90
914	928	2.961526	AACTATGAGCCGTGGTGTAG	57.038	50.000	0.00	0.00	0.00	2.74
915	929	1.848652	ACTATGAGCCGTGGTGTAGT	58.151	50.000	0.00	0.00	0.00	2.73
916	930	1.476891	ACTATGAGCCGTGGTGTAGTG	59.523	52.381	0.00	0.00	0.00	2.74
917	931	1.476891	CTATGAGCCGTGGTGTAGTGT	59.523	52.381	0.00	0.00	0.00	3.55
918	932	0.685097	ATGAGCCGTGGTGTAGTGTT	59.315	50.000	0.00	0.00	0.00	3.32
919	933	0.466543	TGAGCCGTGGTGTAGTGTTT	59.533	50.000	0.00	0.00	0.00	2.83
920	934	0.865769	GAGCCGTGGTGTAGTGTTTG	59.134	55.000	0.00	0.00	0.00	2.93
921	935	0.179468	AGCCGTGGTGTAGTGTTTGT	59.821	50.000	0.00	0.00	0.00	2.83
922	936	0.584876	GCCGTGGTGTAGTGTTTGTC	59.415	55.000	0.00	0.00	0.00	3.18
923	937	1.223187	CCGTGGTGTAGTGTTTGTCC	58.777	55.000	0.00	0.00	0.00	4.02
924	938	1.202604	CCGTGGTGTAGTGTTTGTCCT	60.203	52.381	0.00	0.00	0.00	3.85
925	939	2.557317	CGTGGTGTAGTGTTTGTCCTT	58.443	47.619	0.00	0.00	0.00	3.36
926	940	2.286833	CGTGGTGTAGTGTTTGTCCTTG	59.713	50.000	0.00	0.00	0.00	3.61
927	941	3.275999	GTGGTGTAGTGTTTGTCCTTGT	58.724	45.455	0.00	0.00	0.00	3.16
928	942	4.444536	GTGGTGTAGTGTTTGTCCTTGTA	58.555	43.478	0.00	0.00	0.00	2.41
929	943	4.877251	GTGGTGTAGTGTTTGTCCTTGTAA	59.123	41.667	0.00	0.00	0.00	2.41
930	944	5.354792	GTGGTGTAGTGTTTGTCCTTGTAAA	59.645	40.000	0.00	0.00	0.00	2.01
965	979	2.910688	TTCTTGCGGGATATGGAGTC	57.089	50.000	0.00	0.00	0.00	3.36
966	980	2.088104	TCTTGCGGGATATGGAGTCT	57.912	50.000	0.00	0.00	0.00	3.24
1012	1026	4.397382	CGTCGATCGGCTATATAACGAAA	58.603	43.478	18.81	0.00	40.27	3.46
1117	1132	3.775661	TCGATCAAACTACGAGCATGA	57.224	42.857	0.00	0.00	0.00	3.07
1131	1146	4.141965	ATGACCGCGGACGCATCA	62.142	61.111	35.90	24.99	42.06	3.07
1246	1273	8.284693	GTCTTGCGTTACTATTTTGTTTCCTTA	58.715	33.333	0.00	0.00	0.00	2.69
1261	1288	1.078656	TCCTTATTTTGCTTGGGGGCT	59.921	47.619	0.00	0.00	0.00	5.19
1443	1470	2.354656	TATCGAGCGTGCATCGGC	60.355	61.111	8.24	3.97	40.54	5.54
1507	1534	1.275421	GGCAGAAGTAGAAGGGCCCT	61.275	60.000	22.28	22.28	35.42	5.19
1535	1562	3.749064	GCTCTGCGTCGGACCTCA	61.749	66.667	1.91	0.29	0.00	3.86
1746	1773	6.414402	GCGATTTTCAGTACTACTACTAGCAC	59.586	42.308	0.00	0.00	31.46	4.40
1807	1836	8.950208	ATTCTTTAAGGAGCTTATGTCTGTAC	57.050	34.615	0.00	0.00	0.00	2.90
1917	2627	6.806668	TTTCCAAGTTTTCCCTTTTCAGAT	57.193	33.333	0.00	0.00	0.00	2.90
1922	2632	5.774498	AGTTTTCCCTTTTCAGATGACAC	57.226	39.130	0.00	0.00	0.00	3.67
1924	2634	5.532779	AGTTTTCCCTTTTCAGATGACACTC	59.467	40.000	0.00	0.00	0.00	3.51
1927	2637	3.588842	TCCCTTTTCAGATGACACTCCAT	59.411	43.478	0.00	0.00	0.00	3.41
1938	2648	7.231519	TCAGATGACACTCCATAGGTAATACTG	59.768	40.741	0.00	0.00	0.00	2.74
1944	2654	8.370266	ACACTCCATAGGTAATACTGTGTTTA	57.630	34.615	0.00	0.00	33.14	2.01
2049	2766	2.781681	TAGGTGGTTGCTAAGCTTCC	57.218	50.000	0.00	0.00	0.00	3.46
2092	2813	5.784578	AAACTGGATTTTCGCCTAGTTTT	57.215	34.783	0.00	0.00	35.34	2.43
2159	2895	4.908601	AATGTACAATGTCCCTCACAGA	57.091	40.909	0.00	0.00	38.85	3.41
2256	2993	9.104965	TCCCTATTACAATGTTCAAATCTAACG	57.895	33.333	0.00	0.00	0.00	3.18
2391	3128	1.302511	AAGACGATTGCAACCCGCT	60.303	52.632	19.13	14.82	43.06	5.52
2401	3138	1.489881	GCAACCCGCTTTTTGTGCAG	61.490	55.000	0.00	0.00	37.77	4.41
2690	3427	7.804843	TGAAAATTTGGTTTGCATCTTGAAT	57.195	28.000	0.00	0.00	30.11	2.57
2708	3445	5.964958	TGAATCTTTCCTTCATGAACCAC	57.035	39.130	3.38	0.00	0.00	4.16
2713	3450	5.200483	TCTTTCCTTCATGAACCACTTTGT	58.800	37.500	3.38	0.00	0.00	2.83
2733	3470	7.127339	ACTTTGTGTCTATCCCACCATAAGTAT	59.873	37.037	0.00	0.00	31.77	2.12
2872	3609	6.127814	ACAAGCTTTATTGATCACCTCATGTG	60.128	38.462	0.00	0.00	38.79	3.21
2874	3611	4.883585	GCTTTATTGATCACCTCATGTGGA	59.116	41.667	20.43	0.00	45.48	4.02
3006	3744	0.718904	CGCAAGCGTAACACAGCATA	59.281	50.000	6.25	0.00	35.48	3.14

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	133	1.227383	CCACATACCAGCCCCCTTC	59.773	63.158	0.00	0.00	0.00	3.46
129	134	2.316586	CCCACATACCAGCCCCCTT	61.317	63.158	0.00	0.00	0.00	3.95
141	146	2.747446	GTGAAGTGATAAACGCCCACAT	59.253	45.455	0.00	0.00	35.09	3.21
180	185	2.521465	CAGCTTTGGGTGTGGGCA	60.521	61.111	0.00	0.00	36.34	5.36
479	490	7.653311	GCAGTTCCATGATTTCAAAACTTTAGT	59.347	33.333	0.00	0.00	30.18	2.24
705	718	1.324740	TAGATAACGCCCACACGCCT	61.325	55.000	0.00	0.00	36.19	5.52
772	786	5.645624	CAAAACAAGTAATGTCCACACACA	58.354	37.500	0.00	0.00	42.99	3.72
781	795	3.490078	CGTGTGGGCAAAACAAGTAATGT	60.490	43.478	0.00	0.00	46.82	2.71
833	847	6.892456	TGGAGTTTGCCCACATATTTTGTATA	59.108	34.615	0.00	0.00	36.57	1.47
835	849	5.080337	TGGAGTTTGCCCACATATTTTGTA	58.920	37.500	0.00	0.00	36.57	2.41
879	893	6.183360	GCTCATAGTTTTTGGACGTCGATAAA	60.183	38.462	9.92	10.59	0.00	1.40
897	911	1.476891	ACACTACACCACGGCTCATAG	59.523	52.381	0.00	0.00	0.00	2.23
898	912	1.552578	ACACTACACCACGGCTCATA	58.447	50.000	0.00	0.00	0.00	2.15
899	913	0.685097	AACACTACACCACGGCTCAT	59.315	50.000	0.00	0.00	0.00	2.90
900	914	0.466543	AAACACTACACCACGGCTCA	59.533	50.000	0.00	0.00	0.00	4.26
901	915	0.865769	CAAACACTACACCACGGCTC	59.134	55.000	0.00	0.00	0.00	4.70
902	916	0.179468	ACAAACACTACACCACGGCT	59.821	50.000	0.00	0.00	0.00	5.52
903	917	0.584876	GACAAACACTACACCACGGC	59.415	55.000	0.00	0.00	0.00	5.68
904	918	1.202604	AGGACAAACACTACACCACGG	60.203	52.381	0.00	0.00	0.00	4.94
905	919	2.234300	AGGACAAACACTACACCACG	57.766	50.000	0.00	0.00	0.00	4.94
906	920	3.275999	ACAAGGACAAACACTACACCAC	58.724	45.455	0.00	0.00	0.00	4.16
907	921	3.637911	ACAAGGACAAACACTACACCA	57.362	42.857	0.00	0.00	0.00	4.17
908	922	6.628919	ATTTACAAGGACAAACACTACACC	57.371	37.500	0.00	0.00	0.00	4.16
928	942	9.139174	CCGCAAGAAAGACAATTGTTATTATTT	57.861	29.630	13.36	9.02	43.02	1.40
929	943	7.759433	CCCGCAAGAAAGACAATTGTTATTATT	59.241	33.333	13.36	11.18	43.02	1.40
930	944	7.122055	TCCCGCAAGAAAGACAATTGTTATTAT	59.878	33.333	13.36	5.64	43.02	1.28
952	966	1.001406	GCCAAGAGACTCCATATCCCG	59.999	57.143	0.00	0.00	0.00	5.14
965	979	0.320771	AACTGCACGGTAGCCAAGAG	60.321	55.000	0.00	0.00	0.00	2.85
966	980	0.320421	GAACTGCACGGTAGCCAAGA	60.320	55.000	0.00	0.00	0.00	3.02
1012	1026	8.026396	TGTTTAGTTGGTTTCCTAAGTCTAGT	57.974	34.615	0.00	0.00	0.00	2.57
1182	1197	0.523546	CTCGACAGGACATCCGTTCG	60.524	60.000	14.65	14.65	42.65	3.95
1246	1273	1.625315	GAGAAAGCCCCCAAGCAAAAT	59.375	47.619	0.00	0.00	34.23	1.82
1261	1288	1.964373	GGGTTGCGGCGAAGAGAAA	60.964	57.895	12.98	0.00	0.00	2.52
1491	1518	0.621082	GCAAGGGCCCTTCTACTTCT	59.379	55.000	35.15	8.58	33.42	2.85
1496	1523	2.677228	GCAGCAAGGGCCCTTCTA	59.323	61.111	35.15	0.00	42.56	2.10
1630	1657	1.442520	CAACGTCAAATGCCGCCTG	60.443	57.895	0.00	0.00	0.00	4.85
1746	1773	7.743104	ACGAAACTGTGCTCTAAATTATCTTG	58.257	34.615	0.00	0.00	0.00	3.02
1807	1836	7.883229	ATCCCGCAAAAATAAAACAACTAAG	57.117	32.000	0.00	0.00	0.00	2.18
1917	2627	5.955959	ACACAGTATTACCTATGGAGTGTCA	59.044	40.000	0.00	0.00	32.84	3.58
1970	2680	6.566187	GCACTTCATCTGATTAAGCAGCTATG	60.566	42.308	15.91	14.51	35.86	2.23
1984	2694	8.206325	ACTTCATGTATTTAGCACTTCATCTG	57.794	34.615	0.00	0.00	0.00	2.90
1989	2699	8.494016	AACCTACTTCATGTATTTAGCACTTC	57.506	34.615	0.00	0.00	0.00	3.01
2021	2731	5.704053	GCTTAGCAACCACCTAAAGAGTTTA	59.296	40.000	0.00	0.00	0.00	2.01
2133	2854	4.638865	GTGAGGGACATTGTACATTTACCC	59.361	45.833	16.06	16.06	36.67	3.69
2159	2895	3.577919	ACTACTGACTGGTTTGAGGAGT	58.422	45.455	0.00	0.00	0.00	3.85
2256	2993	3.623060	TCATAGCTTGTGATTTTCCGCTC	59.377	43.478	0.00	0.00	0.00	5.03
2391	3128	1.899142	GGCCTATTCCCTGCACAAAAA	59.101	47.619	0.00	0.00	0.00	1.94
2401	3138	3.617775	GCTCTTAGATTCGGCCTATTCCC	60.618	52.174	0.00	0.00	0.00	3.97
2690	3427	5.067674	CACAAAGTGGTTCATGAAGGAAAGA	59.932	40.000	8.80	0.00	0.00	2.52
2708	3445	5.745227	ACTTATGGTGGGATAGACACAAAG	58.255	41.667	0.00	0.00	40.54	2.77
2713	3450	5.780282	CCTGATACTTATGGTGGGATAGACA	59.220	44.000	0.00	0.00	0.00	3.41
2758	3495	3.913855	TGGGTTCTCCAAAAGCACA	57.086	47.368	0.00	0.00	43.84	4.57
2872	3609	2.711547	AGATATGGGGCAAGTTAGGTCC	59.288	50.000	0.00	0.00	0.00	4.46
2874	3611	3.669949	AGAGATATGGGGCAAGTTAGGT	58.330	45.455	0.00	0.00	0.00	3.08
3006	3744	1.142688	ACCTTGCATGGAACCCTCCT	61.143	55.000	24.48	0.00	42.94	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.