Multiple sequence alignment - TraesCS1D01G088400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G088400 chr1D 100.000 3614 0 0 1 3614 73766741 73763128 0.000000e+00 6674.0
1 TraesCS1D01G088400 chr1D 90.505 495 23 2 39 510 222042352 222041859 1.830000e-177 632.0
2 TraesCS1D01G088400 chr1D 89.861 503 27 7 31 510 73808723 73808222 3.060000e-175 625.0
3 TraesCS1D01G088400 chr1D 89.567 508 28 7 27 510 2575440 2574934 3.960000e-174 621.0
4 TraesCS1D01G088400 chr1D 88.824 510 31 14 27 510 222123879 222123370 1.440000e-168 603.0
5 TraesCS1D01G088400 chr1D 85.743 498 53 8 31 510 349136836 349137333 8.950000e-141 510.0
6 TraesCS1D01G088400 chr1D 83.532 504 55 15 31 510 363418592 363419091 2.560000e-121 446.0
7 TraesCS1D01G088400 chr1D 84.932 73 7 3 620 692 47625499 47625431 1.800000e-08 71.3
8 TraesCS1D01G088400 chr1D 83.562 73 8 3 620 692 219781083 219781151 8.380000e-07 65.8
9 TraesCS1D01G088400 chr1D 90.196 51 4 1 637 686 435277044 435276994 8.380000e-07 65.8
10 TraesCS1D01G088400 chr1A 87.945 1684 101 43 1004 2610 73332344 73330686 0.000000e+00 1892.0
11 TraesCS1D01G088400 chr1A 94.667 900 33 7 2728 3614 502816376 502817273 0.000000e+00 1382.0
12 TraesCS1D01G088400 chr1A 92.683 902 48 5 2729 3614 351592642 351593541 0.000000e+00 1284.0
13 TraesCS1D01G088400 chr1A 91.250 80 7 0 802 881 10162856 10162777 3.820000e-20 110.0
14 TraesCS1D01G088400 chr1A 87.059 85 8 3 802 884 455047665 455047582 3.840000e-15 93.5
15 TraesCS1D01G088400 chr1A 86.301 73 6 3 620 692 445555132 445555200 3.870000e-10 76.8
16 TraesCS1D01G088400 chr1A 84.932 73 7 3 620 692 259902413 259902481 1.800000e-08 71.3
17 TraesCS1D01G088400 chr1A 84.932 73 5 4 620 691 570252380 570252313 6.470000e-08 69.4
18 TraesCS1D01G088400 chr1B 91.701 1229 71 15 1407 2610 117204442 117203220 0.000000e+00 1676.0
19 TraesCS1D01G088400 chr1B 92.913 889 48 4 2739 3614 91874604 91873718 0.000000e+00 1279.0
20 TraesCS1D01G088400 chr1B 90.100 899 43 10 2729 3614 471522103 471522968 0.000000e+00 1125.0
21 TraesCS1D01G088400 chr1B 84.309 376 28 16 1052 1403 117205232 117204864 4.470000e-89 339.0
22 TraesCS1D01G088400 chr1B 92.157 153 6 3 2578 2730 117202690 117202544 1.020000e-50 211.0
23 TraesCS1D01G088400 chr1B 88.000 175 20 1 796 969 673570385 673570559 4.730000e-49 206.0
24 TraesCS1D01G088400 chr1B 86.047 172 23 1 802 972 25797731 25797560 2.220000e-42 183.0
25 TraesCS1D01G088400 chr7A 94.438 899 37 6 2728 3613 708910834 708911732 0.000000e+00 1371.0
26 TraesCS1D01G088400 chr7A 81.765 170 27 4 802 969 652469900 652470067 4.870000e-29 139.0
27 TraesCS1D01G088400 chr4D 93.771 899 42 4 2729 3614 54752628 54751731 0.000000e+00 1338.0
28 TraesCS1D01G088400 chr4D 90.608 181 6 1 3444 3613 121929812 121929992 2.810000e-56 230.0
29 TraesCS1D01G088400 chr4D 83.562 73 9 2 614 686 82022072 82022141 8.380000e-07 65.8
30 TraesCS1D01G088400 chr4D 84.286 70 3 6 621 686 497409978 497409913 1.080000e-05 62.1
31 TraesCS1D01G088400 chr4D 84.286 70 3 6 621 686 497415510 497415445 1.080000e-05 62.1
32 TraesCS1D01G088400 chr4D 84.286 70 3 6 621 686 497422547 497422482 1.080000e-05 62.1
33 TraesCS1D01G088400 chr4D 84.286 70 3 5 621 686 497426034 497425969 1.080000e-05 62.1
34 TraesCS1D01G088400 chr4D 84.375 64 7 2 620 683 200967504 200967564 3.900000e-05 60.2
35 TraesCS1D01G088400 chr4D 100.000 31 0 0 656 686 497442898 497442868 1.400000e-04 58.4
36 TraesCS1D01G088400 chr4D 81.690 71 8 4 614 683 346074271 346074337 2.000000e-03 54.7
37 TraesCS1D01G088400 chr2B 93.878 882 46 4 2739 3613 542250541 542249661 0.000000e+00 1323.0
38 TraesCS1D01G088400 chr2B 93.461 887 45 3 2739 3613 542235966 542235081 0.000000e+00 1304.0
39 TraesCS1D01G088400 chr2B 93.207 736 37 3 2892 3614 540309899 540310634 0.000000e+00 1070.0
40 TraesCS1D01G088400 chr2B 88.000 175 9 2 3452 3614 117122067 117121893 2.850000e-46 196.0
41 TraesCS1D01G088400 chr3D 93.126 902 45 7 2728 3614 526042383 526041484 0.000000e+00 1306.0
42 TraesCS1D01G088400 chr3D 89.861 503 28 2 31 510 405271468 405271970 3.060000e-175 625.0
43 TraesCS1D01G088400 chr3D 86.037 487 57 10 31 510 434613393 434613875 2.490000e-141 512.0
44 TraesCS1D01G088400 chr3B 92.992 899 50 3 2729 3614 252244015 252244913 0.000000e+00 1299.0
45 TraesCS1D01G088400 chr3B 92.444 900 55 3 2728 3614 375715158 375714259 0.000000e+00 1273.0
46 TraesCS1D01G088400 chr3B 84.774 486 52 12 31 495 474842150 474841666 5.460000e-128 468.0
47 TraesCS1D01G088400 chr3B 85.714 175 20 5 795 968 773844932 773844762 2.870000e-41 180.0
48 TraesCS1D01G088400 chr5A 92.196 897 47 5 2729 3614 199141661 199142545 0.000000e+00 1247.0
49 TraesCS1D01G088400 chr5A 86.301 73 6 3 620 692 259226773 259226841 3.870000e-10 76.8
50 TraesCS1D01G088400 chr6D 90.060 503 27 1 31 510 156123112 156123614 6.590000e-177 630.0
51 TraesCS1D01G088400 chr6D 89.307 505 29 3 31 510 294024171 294024675 8.580000e-171 610.0
52 TraesCS1D01G088400 chr6D 83.562 73 8 3 620 692 220262107 220262175 8.380000e-07 65.8
53 TraesCS1D01G088400 chr5D 89.940 497 26 2 38 510 74412295 74412791 1.430000e-173 619.0
54 TraesCS1D01G088400 chr5D 84.646 495 55 9 31 510 409150528 409150040 1.170000e-129 473.0
55 TraesCS1D01G088400 chr5D 83.041 171 21 5 802 972 319144766 319144604 8.080000e-32 148.0
56 TraesCS1D01G088400 chr5D 88.571 70 8 0 614 683 535865128 535865197 6.430000e-13 86.1
57 TraesCS1D01G088400 chr5D 84.932 73 7 3 620 692 240153434 240153366 1.800000e-08 71.3
58 TraesCS1D01G088400 chr2D 87.600 500 40 6 31 510 229902888 229902391 8.760000e-156 560.0
59 TraesCS1D01G088400 chr2D 84.971 173 25 1 802 973 481596784 481596956 1.330000e-39 174.0
60 TraesCS1D01G088400 chr2D 82.738 168 28 1 802 968 626426947 626426780 8.080000e-32 148.0
61 TraesCS1D01G088400 chr5B 85.832 487 59 9 27 510 93305112 93304633 3.220000e-140 508.0
62 TraesCS1D01G088400 chr5B 85.060 502 55 10 27 510 539888648 539888149 9.010000e-136 494.0
63 TraesCS1D01G088400 chr5B 84.416 154 20 3 796 946 701984465 701984617 8.080000e-32 148.0
64 TraesCS1D01G088400 chr5B 85.915 71 6 3 620 689 682068749 682068816 5.010000e-09 73.1
65 TraesCS1D01G088400 chr7D 84.507 497 60 7 31 510 483747185 483747681 3.270000e-130 475.0
66 TraesCS1D01G088400 chr4A 92.143 280 10 2 3346 3614 275464098 275463820 5.660000e-103 385.0
67 TraesCS1D01G088400 chrUn 86.982 169 19 2 802 969 29985188 29985354 1.710000e-43 187.0
68 TraesCS1D01G088400 chrUn 86.567 67 6 2 620 686 75951858 75951795 1.800000e-08 71.3
69 TraesCS1D01G088400 chrUn 84.932 73 8 2 614 686 271159237 271159306 1.800000e-08 71.3
70 TraesCS1D01G088400 chrUn 84.932 73 8 2 614 686 289934051 289934120 1.800000e-08 71.3
71 TraesCS1D01G088400 chrUn 82.432 74 8 4 614 685 15866849 15866919 3.900000e-05 60.2
72 TraesCS1D01G088400 chr7B 85.207 169 24 1 802 969 739977527 739977695 4.800000e-39 172.0
73 TraesCS1D01G088400 chr6A 95.000 60 3 0 802 861 24703986 24703927 1.070000e-15 95.3
74 TraesCS1D01G088400 chr3A 86.301 73 6 3 620 692 423840131 423840199 3.870000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G088400 chr1D 73763128 73766741 3613 True 6674 6674 100.000 1 3614 1 chr1D.!!$R3 3613
1 TraesCS1D01G088400 chr1D 73808222 73808723 501 True 625 625 89.861 31 510 1 chr1D.!!$R4 479
2 TraesCS1D01G088400 chr1D 2574934 2575440 506 True 621 621 89.567 27 510 1 chr1D.!!$R1 483
3 TraesCS1D01G088400 chr1D 222123370 222123879 509 True 603 603 88.824 27 510 1 chr1D.!!$R6 483
4 TraesCS1D01G088400 chr1A 73330686 73332344 1658 True 1892 1892 87.945 1004 2610 1 chr1A.!!$R2 1606
5 TraesCS1D01G088400 chr1A 502816376 502817273 897 False 1382 1382 94.667 2728 3614 1 chr1A.!!$F4 886
6 TraesCS1D01G088400 chr1A 351592642 351593541 899 False 1284 1284 92.683 2729 3614 1 chr1A.!!$F2 885
7 TraesCS1D01G088400 chr1B 91873718 91874604 886 True 1279 1279 92.913 2739 3614 1 chr1B.!!$R2 875
8 TraesCS1D01G088400 chr1B 471522103 471522968 865 False 1125 1125 90.100 2729 3614 1 chr1B.!!$F1 885
9 TraesCS1D01G088400 chr1B 117202544 117205232 2688 True 742 1676 89.389 1052 2730 3 chr1B.!!$R3 1678
10 TraesCS1D01G088400 chr7A 708910834 708911732 898 False 1371 1371 94.438 2728 3613 1 chr7A.!!$F2 885
11 TraesCS1D01G088400 chr4D 54751731 54752628 897 True 1338 1338 93.771 2729 3614 1 chr4D.!!$R1 885
12 TraesCS1D01G088400 chr2B 542249661 542250541 880 True 1323 1323 93.878 2739 3613 1 chr2B.!!$R3 874
13 TraesCS1D01G088400 chr2B 542235081 542235966 885 True 1304 1304 93.461 2739 3613 1 chr2B.!!$R2 874
14 TraesCS1D01G088400 chr2B 540309899 540310634 735 False 1070 1070 93.207 2892 3614 1 chr2B.!!$F1 722
15 TraesCS1D01G088400 chr3D 526041484 526042383 899 True 1306 1306 93.126 2728 3614 1 chr3D.!!$R1 886
16 TraesCS1D01G088400 chr3D 405271468 405271970 502 False 625 625 89.861 31 510 1 chr3D.!!$F1 479
17 TraesCS1D01G088400 chr3B 252244015 252244913 898 False 1299 1299 92.992 2729 3614 1 chr3B.!!$F1 885
18 TraesCS1D01G088400 chr3B 375714259 375715158 899 True 1273 1273 92.444 2728 3614 1 chr3B.!!$R1 886
19 TraesCS1D01G088400 chr5A 199141661 199142545 884 False 1247 1247 92.196 2729 3614 1 chr5A.!!$F1 885
20 TraesCS1D01G088400 chr6D 156123112 156123614 502 False 630 630 90.060 31 510 1 chr6D.!!$F1 479
21 TraesCS1D01G088400 chr6D 294024171 294024675 504 False 610 610 89.307 31 510 1 chr6D.!!$F3 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 573 0.105039 ACTCGGATCCAATCTTCGCC 59.895 55.0 13.41 0.0 0.00 5.54 F
1550 2029 0.024238 CGAAGATTCGCAGACGCAAG 59.976 55.0 1.55 0.0 44.26 4.01 F
2093 2599 0.042880 CGATCTCTTCCTCGTCGTCG 60.043 60.0 0.00 0.0 38.55 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2583 0.037512 AGACGACGACGAGGAAGAGA 60.038 55.0 15.32 0.0 42.66 3.10 R
2362 2873 0.325272 GTTGAACCTCCTCAGTCCCC 59.675 60.0 0.00 0.0 0.00 4.81 R
3120 4221 0.903942 TTCATTGCAGGGGGAATTGC 59.096 50.0 0.00 0.0 40.67 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.039480 CGATTACATGGCAAATCTGATCC 57.961 43.478 8.34 0.00 31.29 3.36
23 24 4.516321 CGATTACATGGCAAATCTGATCCA 59.484 41.667 8.34 0.00 31.29 3.41
24 25 5.008911 CGATTACATGGCAAATCTGATCCAA 59.991 40.000 8.34 0.00 31.29 3.53
25 26 6.459985 CGATTACATGGCAAATCTGATCCAAA 60.460 38.462 8.34 0.00 31.29 3.28
26 27 6.795144 TTACATGGCAAATCTGATCCAAAT 57.205 33.333 0.00 0.00 31.66 2.32
27 28 5.272283 ACATGGCAAATCTGATCCAAATC 57.728 39.130 0.00 0.00 31.66 2.17
28 29 4.712829 ACATGGCAAATCTGATCCAAATCA 59.287 37.500 0.00 0.00 39.63 2.57
29 30 5.365605 ACATGGCAAATCTGATCCAAATCAT 59.634 36.000 0.00 0.00 41.05 2.45
110 111 2.553438 ATTCCCCTCTTCGGAGCCCT 62.553 60.000 0.00 0.00 40.56 5.19
126 127 0.176680 CCCTGAACGGACTCCAGATG 59.823 60.000 0.00 0.00 33.16 2.90
197 222 1.585297 TTTTCTCCCCGAACGTGAAC 58.415 50.000 0.00 0.00 0.00 3.18
294 321 2.612746 GGTGTGGGCCCCCTTCTA 60.613 66.667 22.27 0.00 36.94 2.10
300 327 1.149101 TGGGCCCCCTTCTATTGATC 58.851 55.000 22.27 0.00 36.94 2.92
305 332 3.374208 GGCCCCCTTCTATTGATCCTTTT 60.374 47.826 0.00 0.00 0.00 2.27
447 474 6.406177 CCAGGTTAGTTCCATTCAAATCATGG 60.406 42.308 0.00 0.00 42.51 3.66
469 496 5.104277 TGGAAGTTAGAGTCCAAAACAAGGA 60.104 40.000 0.00 0.00 41.02 3.36
470 497 6.004574 GGAAGTTAGAGTCCAAAACAAGGAT 58.995 40.000 0.00 0.00 37.52 3.24
499 526 7.837863 AGAGTTTGGAAAAGTAGATACGATGA 58.162 34.615 0.00 0.00 0.00 2.92
515 542 4.360563 ACGATGAAGACGTATCATTGTCC 58.639 43.478 22.22 9.25 44.79 4.02
516 543 4.098044 ACGATGAAGACGTATCATTGTCCT 59.902 41.667 22.22 8.13 44.79 3.85
517 544 5.043903 CGATGAAGACGTATCATTGTCCTT 58.956 41.667 15.24 0.00 37.64 3.36
518 545 5.051441 CGATGAAGACGTATCATTGTCCTTG 60.051 44.000 15.24 0.00 37.64 3.61
519 546 4.503910 TGAAGACGTATCATTGTCCTTGG 58.496 43.478 0.00 0.00 35.71 3.61
520 547 4.020573 TGAAGACGTATCATTGTCCTTGGT 60.021 41.667 0.00 0.00 35.71 3.67
521 548 3.861840 AGACGTATCATTGTCCTTGGTG 58.138 45.455 0.00 0.00 35.71 4.17
522 549 2.936498 GACGTATCATTGTCCTTGGTGG 59.064 50.000 0.00 0.00 37.10 4.61
523 550 2.569853 ACGTATCATTGTCCTTGGTGGA 59.430 45.455 0.00 0.00 43.86 4.02
532 559 1.776662 TCCTTGGTGGATCTACTCGG 58.223 55.000 9.27 7.29 40.56 4.63
533 560 1.286849 TCCTTGGTGGATCTACTCGGA 59.713 52.381 9.27 9.34 40.56 4.55
534 561 2.091278 TCCTTGGTGGATCTACTCGGAT 60.091 50.000 9.27 0.00 40.56 4.18
535 562 2.297597 CCTTGGTGGATCTACTCGGATC 59.702 54.545 9.27 0.00 40.78 3.36
544 571 4.728534 GATCTACTCGGATCCAATCTTCG 58.271 47.826 13.41 0.00 36.91 3.79
545 572 2.293677 TCTACTCGGATCCAATCTTCGC 59.706 50.000 13.41 0.00 0.00 4.70
546 573 0.105039 ACTCGGATCCAATCTTCGCC 59.895 55.000 13.41 0.00 0.00 5.54
547 574 0.390860 CTCGGATCCAATCTTCGCCT 59.609 55.000 13.41 0.00 0.00 5.52
548 575 0.830648 TCGGATCCAATCTTCGCCTT 59.169 50.000 13.41 0.00 0.00 4.35
549 576 0.940126 CGGATCCAATCTTCGCCTTG 59.060 55.000 13.41 0.00 0.00 3.61
550 577 1.743772 CGGATCCAATCTTCGCCTTGT 60.744 52.381 13.41 0.00 0.00 3.16
551 578 1.672881 GGATCCAATCTTCGCCTTGTG 59.327 52.381 6.95 0.00 0.00 3.33
552 579 2.359900 GATCCAATCTTCGCCTTGTGT 58.640 47.619 0.00 0.00 0.00 3.72
553 580 1.522668 TCCAATCTTCGCCTTGTGTG 58.477 50.000 0.00 0.00 0.00 3.82
554 581 1.202758 TCCAATCTTCGCCTTGTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
555 582 1.197721 CCAATCTTCGCCTTGTGTGTC 59.802 52.381 0.00 0.00 0.00 3.67
556 583 2.146342 CAATCTTCGCCTTGTGTGTCT 58.854 47.619 0.00 0.00 0.00 3.41
557 584 2.549754 CAATCTTCGCCTTGTGTGTCTT 59.450 45.455 0.00 0.00 0.00 3.01
558 585 1.581934 TCTTCGCCTTGTGTGTCTTG 58.418 50.000 0.00 0.00 0.00 3.02
559 586 1.138069 TCTTCGCCTTGTGTGTCTTGA 59.862 47.619 0.00 0.00 0.00 3.02
560 587 1.528586 CTTCGCCTTGTGTGTCTTGAG 59.471 52.381 0.00 0.00 0.00 3.02
561 588 0.464036 TCGCCTTGTGTGTCTTGAGT 59.536 50.000 0.00 0.00 0.00 3.41
562 589 1.134521 TCGCCTTGTGTGTCTTGAGTT 60.135 47.619 0.00 0.00 0.00 3.01
563 590 1.670811 CGCCTTGTGTGTCTTGAGTTT 59.329 47.619 0.00 0.00 0.00 2.66
564 591 2.539547 CGCCTTGTGTGTCTTGAGTTTG 60.540 50.000 0.00 0.00 0.00 2.93
565 592 2.423538 GCCTTGTGTGTCTTGAGTTTGT 59.576 45.455 0.00 0.00 0.00 2.83
566 593 3.625764 GCCTTGTGTGTCTTGAGTTTGTA 59.374 43.478 0.00 0.00 0.00 2.41
567 594 4.275936 GCCTTGTGTGTCTTGAGTTTGTAT 59.724 41.667 0.00 0.00 0.00 2.29
568 595 5.221048 GCCTTGTGTGTCTTGAGTTTGTATT 60.221 40.000 0.00 0.00 0.00 1.89
569 596 6.201517 CCTTGTGTGTCTTGAGTTTGTATTG 58.798 40.000 0.00 0.00 0.00 1.90
570 597 6.183360 CCTTGTGTGTCTTGAGTTTGTATTGT 60.183 38.462 0.00 0.00 0.00 2.71
571 598 6.751514 TGTGTGTCTTGAGTTTGTATTGTT 57.248 33.333 0.00 0.00 0.00 2.83
572 599 7.151999 TGTGTGTCTTGAGTTTGTATTGTTT 57.848 32.000 0.00 0.00 0.00 2.83
573 600 7.598278 TGTGTGTCTTGAGTTTGTATTGTTTT 58.402 30.769 0.00 0.00 0.00 2.43
574 601 7.540400 TGTGTGTCTTGAGTTTGTATTGTTTTG 59.460 33.333 0.00 0.00 0.00 2.44
575 602 7.753132 GTGTGTCTTGAGTTTGTATTGTTTTGA 59.247 33.333 0.00 0.00 0.00 2.69
576 603 8.465999 TGTGTCTTGAGTTTGTATTGTTTTGAT 58.534 29.630 0.00 0.00 0.00 2.57
577 604 8.958043 GTGTCTTGAGTTTGTATTGTTTTGATC 58.042 33.333 0.00 0.00 0.00 2.92
578 605 8.902806 TGTCTTGAGTTTGTATTGTTTTGATCT 58.097 29.630 0.00 0.00 0.00 2.75
581 608 9.318041 CTTGAGTTTGTATTGTTTTGATCTACG 57.682 33.333 0.00 0.00 0.00 3.51
582 609 7.295201 TGAGTTTGTATTGTTTTGATCTACGC 58.705 34.615 0.00 0.00 0.00 4.42
583 610 6.304126 AGTTTGTATTGTTTTGATCTACGCG 58.696 36.000 3.53 3.53 0.00 6.01
584 611 5.849357 TTGTATTGTTTTGATCTACGCGT 57.151 34.783 19.17 19.17 0.00 6.01
585 612 5.444586 TGTATTGTTTTGATCTACGCGTC 57.555 39.130 18.63 0.56 0.00 5.19
586 613 5.165676 TGTATTGTTTTGATCTACGCGTCT 58.834 37.500 18.63 0.60 0.00 4.18
587 614 4.842139 ATTGTTTTGATCTACGCGTCTC 57.158 40.909 18.63 12.37 0.00 3.36
588 615 3.570926 TGTTTTGATCTACGCGTCTCT 57.429 42.857 18.63 0.00 0.00 3.10
589 616 3.909430 TGTTTTGATCTACGCGTCTCTT 58.091 40.909 18.63 0.00 0.00 2.85
590 617 3.918591 TGTTTTGATCTACGCGTCTCTTC 59.081 43.478 18.63 9.78 0.00 2.87
591 618 3.842732 TTTGATCTACGCGTCTCTTCA 57.157 42.857 18.63 12.52 0.00 3.02
592 619 4.371855 TTTGATCTACGCGTCTCTTCAT 57.628 40.909 18.63 0.00 0.00 2.57
593 620 3.610786 TGATCTACGCGTCTCTTCATC 57.389 47.619 18.63 9.82 0.00 2.92
594 621 2.032808 TGATCTACGCGTCTCTTCATCG 60.033 50.000 18.63 0.00 0.00 3.84
595 622 0.656259 TCTACGCGTCTCTTCATCGG 59.344 55.000 18.63 0.00 0.00 4.18
596 623 0.377554 CTACGCGTCTCTTCATCGGT 59.622 55.000 18.63 0.00 0.00 4.69
597 624 1.596260 CTACGCGTCTCTTCATCGGTA 59.404 52.381 18.63 0.00 0.00 4.02
598 625 0.806868 ACGCGTCTCTTCATCGGTAA 59.193 50.000 5.58 0.00 0.00 2.85
599 626 1.404391 ACGCGTCTCTTCATCGGTAAT 59.596 47.619 5.58 0.00 0.00 1.89
600 627 1.781429 CGCGTCTCTTCATCGGTAATG 59.219 52.381 0.00 0.00 36.65 1.90
601 628 2.128035 GCGTCTCTTCATCGGTAATGG 58.872 52.381 0.00 0.00 35.94 3.16
602 629 2.128035 CGTCTCTTCATCGGTAATGGC 58.872 52.381 0.00 0.00 35.94 4.40
603 630 2.223829 CGTCTCTTCATCGGTAATGGCT 60.224 50.000 0.00 0.00 35.94 4.75
604 631 3.126831 GTCTCTTCATCGGTAATGGCTG 58.873 50.000 0.00 0.00 35.94 4.85
605 632 2.766263 TCTCTTCATCGGTAATGGCTGT 59.234 45.455 0.00 0.00 35.94 4.40
606 633 3.197766 TCTCTTCATCGGTAATGGCTGTT 59.802 43.478 0.00 0.00 35.94 3.16
607 634 3.270027 TCTTCATCGGTAATGGCTGTTG 58.730 45.455 0.00 0.00 35.94 3.33
608 635 2.779755 TCATCGGTAATGGCTGTTGT 57.220 45.000 0.00 0.00 35.94 3.32
609 636 3.066291 TCATCGGTAATGGCTGTTGTT 57.934 42.857 0.00 0.00 35.94 2.83
610 637 3.006940 TCATCGGTAATGGCTGTTGTTC 58.993 45.455 0.00 0.00 35.94 3.18
611 638 2.851263 TCGGTAATGGCTGTTGTTCT 57.149 45.000 0.00 0.00 0.00 3.01
612 639 2.422597 TCGGTAATGGCTGTTGTTCTG 58.577 47.619 0.00 0.00 0.00 3.02
613 640 1.468520 CGGTAATGGCTGTTGTTCTGG 59.531 52.381 0.00 0.00 0.00 3.86
614 641 2.514803 GGTAATGGCTGTTGTTCTGGT 58.485 47.619 0.00 0.00 0.00 4.00
615 642 2.228822 GGTAATGGCTGTTGTTCTGGTG 59.771 50.000 0.00 0.00 0.00 4.17
616 643 0.675633 AATGGCTGTTGTTCTGGTGC 59.324 50.000 0.00 0.00 0.00 5.01
617 644 0.467844 ATGGCTGTTGTTCTGGTGCA 60.468 50.000 0.00 0.00 0.00 4.57
618 645 0.682532 TGGCTGTTGTTCTGGTGCAA 60.683 50.000 0.00 0.00 0.00 4.08
619 646 0.459489 GGCTGTTGTTCTGGTGCAAA 59.541 50.000 0.00 0.00 0.00 3.68
620 647 1.069049 GGCTGTTGTTCTGGTGCAAAT 59.931 47.619 0.00 0.00 0.00 2.32
621 648 2.483538 GGCTGTTGTTCTGGTGCAAATT 60.484 45.455 0.00 0.00 0.00 1.82
622 649 2.796593 GCTGTTGTTCTGGTGCAAATTC 59.203 45.455 0.00 0.00 0.00 2.17
623 650 3.737663 GCTGTTGTTCTGGTGCAAATTCA 60.738 43.478 0.00 0.00 0.00 2.57
624 651 3.779759 TGTTGTTCTGGTGCAAATTCAC 58.220 40.909 0.00 0.00 36.28 3.18
625 652 3.446873 TGTTGTTCTGGTGCAAATTCACT 59.553 39.130 0.00 0.00 37.16 3.41
626 653 3.988379 TGTTCTGGTGCAAATTCACTC 57.012 42.857 0.00 0.00 37.16 3.51
627 654 2.290367 TGTTCTGGTGCAAATTCACTCG 59.710 45.455 0.00 0.00 37.16 4.18
628 655 2.254546 TCTGGTGCAAATTCACTCGT 57.745 45.000 0.00 0.00 37.16 4.18
629 656 2.571212 TCTGGTGCAAATTCACTCGTT 58.429 42.857 0.00 0.00 37.16 3.85
630 657 2.948979 TCTGGTGCAAATTCACTCGTTT 59.051 40.909 0.00 0.00 37.16 3.60
631 658 3.380004 TCTGGTGCAAATTCACTCGTTTT 59.620 39.130 0.00 0.00 37.16 2.43
632 659 3.443037 TGGTGCAAATTCACTCGTTTTG 58.557 40.909 0.00 0.00 37.16 2.44
640 667 7.026568 CAAATTCACTCGTTTTGCTTCATAC 57.973 36.000 0.00 0.00 0.00 2.39
641 668 4.383774 TTCACTCGTTTTGCTTCATACG 57.616 40.909 0.00 0.00 35.46 3.06
642 669 3.386486 TCACTCGTTTTGCTTCATACGT 58.614 40.909 0.00 0.00 35.63 3.57
643 670 4.548494 TCACTCGTTTTGCTTCATACGTA 58.452 39.130 0.00 0.00 35.63 3.57
644 671 4.383649 TCACTCGTTTTGCTTCATACGTAC 59.616 41.667 0.00 0.00 35.63 3.67
645 672 4.384846 CACTCGTTTTGCTTCATACGTACT 59.615 41.667 0.00 0.00 35.63 2.73
646 673 5.570206 CACTCGTTTTGCTTCATACGTACTA 59.430 40.000 0.00 0.00 35.63 1.82
647 674 5.798934 ACTCGTTTTGCTTCATACGTACTAG 59.201 40.000 0.00 0.00 35.63 2.57
648 675 5.702865 TCGTTTTGCTTCATACGTACTAGT 58.297 37.500 0.00 0.00 35.63 2.57
649 676 6.151691 TCGTTTTGCTTCATACGTACTAGTT 58.848 36.000 0.00 0.00 35.63 2.24
650 677 6.306356 TCGTTTTGCTTCATACGTACTAGTTC 59.694 38.462 0.00 0.00 35.63 3.01
651 678 6.088483 CGTTTTGCTTCATACGTACTAGTTCA 59.912 38.462 0.00 0.00 0.00 3.18
652 679 7.201410 CGTTTTGCTTCATACGTACTAGTTCAT 60.201 37.037 0.00 0.00 0.00 2.57
653 680 9.079833 GTTTTGCTTCATACGTACTAGTTCATA 57.920 33.333 0.00 0.00 0.00 2.15
654 681 9.811995 TTTTGCTTCATACGTACTAGTTCATAT 57.188 29.630 0.00 0.00 0.00 1.78
655 682 9.811995 TTTGCTTCATACGTACTAGTTCATATT 57.188 29.630 0.00 0.00 0.00 1.28
727 754 5.904362 AAAGGAAATGAATGTGAGTAGCC 57.096 39.130 0.00 0.00 0.00 3.93
728 755 4.851639 AGGAAATGAATGTGAGTAGCCT 57.148 40.909 0.00 0.00 0.00 4.58
729 756 5.957771 AGGAAATGAATGTGAGTAGCCTA 57.042 39.130 0.00 0.00 0.00 3.93
730 757 5.923204 AGGAAATGAATGTGAGTAGCCTAG 58.077 41.667 0.00 0.00 0.00 3.02
731 758 5.663106 AGGAAATGAATGTGAGTAGCCTAGA 59.337 40.000 0.00 0.00 0.00 2.43
732 759 5.755861 GGAAATGAATGTGAGTAGCCTAGAC 59.244 44.000 0.00 0.00 0.00 2.59
733 760 6.407525 GGAAATGAATGTGAGTAGCCTAGACT 60.408 42.308 0.00 0.00 0.00 3.24
734 761 6.552445 AATGAATGTGAGTAGCCTAGACTT 57.448 37.500 0.00 0.00 0.00 3.01
735 762 5.584253 TGAATGTGAGTAGCCTAGACTTC 57.416 43.478 0.00 0.00 0.00 3.01
736 763 4.096532 TGAATGTGAGTAGCCTAGACTTCG 59.903 45.833 0.00 0.00 0.00 3.79
737 764 2.366533 TGTGAGTAGCCTAGACTTCGG 58.633 52.381 0.00 0.00 0.00 4.30
738 765 2.290768 TGTGAGTAGCCTAGACTTCGGT 60.291 50.000 0.00 0.00 0.00 4.69
739 766 2.754002 GTGAGTAGCCTAGACTTCGGTT 59.246 50.000 0.00 0.00 0.00 4.44
740 767 3.193056 GTGAGTAGCCTAGACTTCGGTTT 59.807 47.826 0.00 0.00 0.00 3.27
741 768 3.830755 TGAGTAGCCTAGACTTCGGTTTT 59.169 43.478 0.00 0.00 0.00 2.43
742 769 4.082354 TGAGTAGCCTAGACTTCGGTTTTC 60.082 45.833 0.00 0.00 0.00 2.29
743 770 2.764439 AGCCTAGACTTCGGTTTTCC 57.236 50.000 0.00 0.00 0.00 3.13
754 781 1.209127 GGTTTTCCGTGGATGTGCG 59.791 57.895 0.00 0.00 0.00 5.34
755 782 1.512156 GGTTTTCCGTGGATGTGCGT 61.512 55.000 0.00 0.00 0.00 5.24
756 783 0.309612 GTTTTCCGTGGATGTGCGTT 59.690 50.000 0.00 0.00 0.00 4.84
757 784 1.532007 GTTTTCCGTGGATGTGCGTTA 59.468 47.619 0.00 0.00 0.00 3.18
758 785 1.149987 TTTCCGTGGATGTGCGTTAC 58.850 50.000 0.00 0.00 0.00 2.50
759 786 0.671163 TTCCGTGGATGTGCGTTACC 60.671 55.000 0.00 0.00 0.00 2.85
760 787 1.374885 CCGTGGATGTGCGTTACCA 60.375 57.895 0.00 0.00 0.00 3.25
761 788 0.951525 CCGTGGATGTGCGTTACCAA 60.952 55.000 0.00 0.00 34.11 3.67
762 789 0.442310 CGTGGATGTGCGTTACCAAG 59.558 55.000 0.00 0.00 34.11 3.61
763 790 1.519408 GTGGATGTGCGTTACCAAGT 58.481 50.000 0.00 0.00 34.11 3.16
764 791 2.690786 GTGGATGTGCGTTACCAAGTA 58.309 47.619 0.00 0.00 34.11 2.24
765 792 2.671396 GTGGATGTGCGTTACCAAGTAG 59.329 50.000 0.00 0.00 34.11 2.57
766 793 2.300723 TGGATGTGCGTTACCAAGTAGT 59.699 45.455 0.00 0.00 0.00 2.73
767 794 3.510753 TGGATGTGCGTTACCAAGTAGTA 59.489 43.478 0.00 0.00 0.00 1.82
768 795 4.110482 GGATGTGCGTTACCAAGTAGTAG 58.890 47.826 0.00 0.00 0.00 2.57
769 796 4.381292 GGATGTGCGTTACCAAGTAGTAGT 60.381 45.833 0.00 0.00 0.00 2.73
770 797 3.904571 TGTGCGTTACCAAGTAGTAGTG 58.095 45.455 0.00 0.00 0.00 2.74
771 798 3.318839 TGTGCGTTACCAAGTAGTAGTGT 59.681 43.478 0.00 0.00 0.00 3.55
772 799 3.916776 GTGCGTTACCAAGTAGTAGTGTC 59.083 47.826 0.00 0.00 0.00 3.67
773 800 3.822735 TGCGTTACCAAGTAGTAGTGTCT 59.177 43.478 0.00 0.00 0.00 3.41
774 801 4.279169 TGCGTTACCAAGTAGTAGTGTCTT 59.721 41.667 0.00 0.00 0.00 3.01
775 802 4.620184 GCGTTACCAAGTAGTAGTGTCTTG 59.380 45.833 9.12 9.12 38.45 3.02
776 803 5.563475 GCGTTACCAAGTAGTAGTGTCTTGA 60.563 44.000 14.68 0.00 40.35 3.02
777 804 5.855395 CGTTACCAAGTAGTAGTGTCTTGAC 59.145 44.000 14.68 0.00 40.35 3.18
778 805 4.868314 ACCAAGTAGTAGTGTCTTGACC 57.132 45.455 14.68 0.00 40.35 4.02
779 806 4.220724 ACCAAGTAGTAGTGTCTTGACCA 58.779 43.478 14.68 0.00 40.35 4.02
780 807 4.281182 ACCAAGTAGTAGTGTCTTGACCAG 59.719 45.833 14.68 5.16 40.35 4.00
781 808 4.281182 CCAAGTAGTAGTGTCTTGACCAGT 59.719 45.833 14.68 0.00 40.35 4.00
782 809 5.221461 CCAAGTAGTAGTGTCTTGACCAGTT 60.221 44.000 14.68 0.00 40.35 3.16
783 810 6.281405 CAAGTAGTAGTGTCTTGACCAGTTT 58.719 40.000 10.05 0.00 40.35 2.66
784 811 7.431249 CAAGTAGTAGTGTCTTGACCAGTTTA 58.569 38.462 10.05 0.00 40.35 2.01
785 812 7.592885 AGTAGTAGTGTCTTGACCAGTTTAA 57.407 36.000 0.00 0.00 0.00 1.52
786 813 8.015185 AGTAGTAGTGTCTTGACCAGTTTAAA 57.985 34.615 0.00 0.00 0.00 1.52
787 814 8.480501 AGTAGTAGTGTCTTGACCAGTTTAAAA 58.519 33.333 0.00 0.00 0.00 1.52
788 815 9.101655 GTAGTAGTGTCTTGACCAGTTTAAAAA 57.898 33.333 0.00 0.00 0.00 1.94
789 816 7.982224 AGTAGTGTCTTGACCAGTTTAAAAAC 58.018 34.615 0.00 0.00 39.17 2.43
790 817 6.827586 AGTGTCTTGACCAGTTTAAAAACA 57.172 33.333 8.21 0.00 41.30 2.83
791 818 7.222000 AGTGTCTTGACCAGTTTAAAAACAA 57.778 32.000 8.21 0.00 41.30 2.83
792 819 7.662897 AGTGTCTTGACCAGTTTAAAAACAAA 58.337 30.769 8.21 0.00 41.30 2.83
793 820 8.311109 AGTGTCTTGACCAGTTTAAAAACAAAT 58.689 29.630 8.21 0.00 41.30 2.32
794 821 8.931775 GTGTCTTGACCAGTTTAAAAACAAATT 58.068 29.630 8.21 0.00 41.30 1.82
848 875 9.996554 TTTAAGAATGTCACATCTAAACTCTCA 57.003 29.630 0.00 0.00 0.00 3.27
849 876 7.897575 AAGAATGTCACATCTAAACTCTCAC 57.102 36.000 0.00 0.00 0.00 3.51
850 877 6.997655 AGAATGTCACATCTAAACTCTCACA 58.002 36.000 0.00 0.00 0.00 3.58
851 878 7.445121 AGAATGTCACATCTAAACTCTCACAA 58.555 34.615 0.00 0.00 0.00 3.33
852 879 7.933577 AGAATGTCACATCTAAACTCTCACAAA 59.066 33.333 0.00 0.00 0.00 2.83
853 880 8.627208 AATGTCACATCTAAACTCTCACAAAT 57.373 30.769 0.00 0.00 0.00 2.32
854 881 9.725019 AATGTCACATCTAAACTCTCACAAATA 57.275 29.630 0.00 0.00 0.00 1.40
855 882 9.896645 ATGTCACATCTAAACTCTCACAAATAT 57.103 29.630 0.00 0.00 0.00 1.28
923 950 8.225603 AGATCACAAACAAAGTAAACATCAGT 57.774 30.769 0.00 0.00 0.00 3.41
924 951 8.686334 AGATCACAAACAAAGTAAACATCAGTT 58.314 29.630 0.00 0.00 40.40 3.16
971 998 6.402222 CATCTAGATGTATCCTAAACAGGCC 58.598 44.000 22.42 0.00 34.23 5.19
972 999 5.464069 TCTAGATGTATCCTAAACAGGCCA 58.536 41.667 5.01 0.00 0.00 5.36
973 1000 5.903010 TCTAGATGTATCCTAAACAGGCCAA 59.097 40.000 5.01 0.00 0.00 4.52
974 1001 5.450818 AGATGTATCCTAAACAGGCCAAA 57.549 39.130 5.01 0.00 0.00 3.28
975 1002 5.826643 AGATGTATCCTAAACAGGCCAAAA 58.173 37.500 5.01 0.00 0.00 2.44
976 1003 6.252995 AGATGTATCCTAAACAGGCCAAAAA 58.747 36.000 5.01 0.00 0.00 1.94
1060 1087 3.813724 CCCCACTCCATCCCTGGC 61.814 72.222 0.00 0.00 42.80 4.85
1115 1148 1.056700 AAGTGTCAGGGCCAGTCTGT 61.057 55.000 6.18 0.00 34.15 3.41
1252 1298 2.993840 ACCGCAGAGCAGAGCAGA 60.994 61.111 0.00 0.00 0.00 4.26
1253 1299 2.202770 CCGCAGAGCAGAGCAGAG 60.203 66.667 0.00 0.00 0.00 3.35
1254 1300 2.886604 CGCAGAGCAGAGCAGAGC 60.887 66.667 0.00 0.00 0.00 4.09
1255 1301 2.265109 GCAGAGCAGAGCAGAGCA 59.735 61.111 0.00 0.00 0.00 4.26
1256 1302 1.812093 GCAGAGCAGAGCAGAGCAG 60.812 63.158 0.00 0.00 0.00 4.24
1301 1360 2.622942 AGAATGCAGTCTCTCTCCGATC 59.377 50.000 11.63 0.00 0.00 3.69
1302 1361 0.950836 ATGCAGTCTCTCTCCGATCG 59.049 55.000 8.51 8.51 0.00 3.69
1320 1379 2.283966 AGCAGTCCCGTGCCTACT 60.284 61.111 0.00 0.00 45.20 2.57
1321 1380 1.000019 AGCAGTCCCGTGCCTACTA 60.000 57.895 0.00 0.00 45.20 1.82
1322 1381 1.141234 GCAGTCCCGTGCCTACTAC 59.859 63.158 0.00 0.00 37.49 2.73
1323 1382 1.601419 GCAGTCCCGTGCCTACTACA 61.601 60.000 0.00 0.00 37.49 2.74
1324 1383 0.892755 CAGTCCCGTGCCTACTACAA 59.107 55.000 0.00 0.00 0.00 2.41
1359 1419 2.374830 ATCAAGGAGAGGCCATCGCG 62.375 60.000 5.01 0.00 40.02 5.87
1364 1424 1.068083 GAGAGGCCATCGCGATCAA 59.932 57.895 20.85 0.00 35.02 2.57
1365 1425 0.320247 GAGAGGCCATCGCGATCAAT 60.320 55.000 20.85 5.42 35.02 2.57
1366 1426 0.320247 AGAGGCCATCGCGATCAATC 60.320 55.000 20.85 14.48 35.02 2.67
1367 1427 0.601046 GAGGCCATCGCGATCAATCA 60.601 55.000 20.85 0.00 35.02 2.57
1370 1430 0.601046 GCCATCGCGATCAATCAGGA 60.601 55.000 20.85 0.00 0.00 3.86
1375 1435 2.024414 TCGCGATCAATCAGGAGAGAA 58.976 47.619 3.71 0.00 0.00 2.87
1382 1442 6.047870 CGATCAATCAGGAGAGAACAAGATT 58.952 40.000 0.00 0.00 0.00 2.40
1383 1443 7.205992 CGATCAATCAGGAGAGAACAAGATTA 58.794 38.462 0.00 0.00 0.00 1.75
1384 1444 7.381948 CGATCAATCAGGAGAGAACAAGATTAG 59.618 40.741 0.00 0.00 0.00 1.73
1388 1448 4.161189 TCAGGAGAGAACAAGATTAGCCAG 59.839 45.833 0.00 0.00 0.00 4.85
1389 1449 3.454082 AGGAGAGAACAAGATTAGCCAGG 59.546 47.826 0.00 0.00 0.00 4.45
1391 1451 2.092699 AGAGAACAAGATTAGCCAGGGC 60.093 50.000 0.97 0.97 42.33 5.19
1429 1908 3.562635 GGAAACGCTTCTCACGGG 58.437 61.111 0.00 0.00 34.00 5.28
1430 1909 1.005394 GGAAACGCTTCTCACGGGA 60.005 57.895 0.00 0.00 34.00 5.14
1431 1910 1.014564 GGAAACGCTTCTCACGGGAG 61.015 60.000 8.88 8.88 42.80 4.30
1473 1952 0.969149 CGATCGATGGGGATGGAAGA 59.031 55.000 10.26 0.00 0.00 2.87
1525 2004 2.146342 CTTGTGCACGATCTTGGAACT 58.854 47.619 13.13 0.00 0.00 3.01
1549 2028 2.070049 CGAAGATTCGCAGACGCAA 58.930 52.632 1.55 0.00 44.26 4.85
1550 2029 0.024238 CGAAGATTCGCAGACGCAAG 59.976 55.000 1.55 0.00 44.26 4.01
1551 2030 0.247458 GAAGATTCGCAGACGCAAGC 60.247 55.000 0.00 0.00 45.62 4.01
1552 2031 0.671781 AAGATTCGCAGACGCAAGCT 60.672 50.000 0.00 0.00 45.62 3.74
1553 2032 0.671781 AGATTCGCAGACGCAAGCTT 60.672 50.000 0.00 0.00 45.62 3.74
1554 2033 0.166814 GATTCGCAGACGCAAGCTTT 59.833 50.000 0.00 0.00 45.62 3.51
1603 2100 1.366366 CCACCGGTGTTTCGAGACT 59.634 57.895 31.80 0.00 0.00 3.24
1645 2142 1.198759 TGGACCCTGCCTCCTTACAC 61.199 60.000 0.00 0.00 0.00 2.90
1648 2145 0.766674 ACCCTGCCTCCTTACACACA 60.767 55.000 0.00 0.00 0.00 3.72
1655 2152 2.359900 CCTCCTTACACACATTCCTGC 58.640 52.381 0.00 0.00 0.00 4.85
1657 2154 3.005554 CTCCTTACACACATTCCTGCTG 58.994 50.000 0.00 0.00 0.00 4.41
1971 2474 0.744771 GAGCTGGGGTTCATCCGTTC 60.745 60.000 0.00 0.00 37.00 3.95
2002 2508 0.803740 GTAGTCCAGAACTCGACGCT 59.196 55.000 0.00 0.00 39.55 5.07
2005 2511 1.402259 AGTCCAGAACTCGACGCTATG 59.598 52.381 0.00 0.00 30.02 2.23
2077 2583 1.819632 GGTTGAATCCTGCGGCGAT 60.820 57.895 12.98 0.00 0.00 4.58
2093 2599 0.042880 CGATCTCTTCCTCGTCGTCG 60.043 60.000 0.00 0.00 38.55 5.12
2157 2663 3.368531 GCGGTCTACAAGATGGACTTCTT 60.369 47.826 0.00 0.00 38.80 2.52
2164 2670 3.990959 AAGATGGACTTCTTGAGACCC 57.009 47.619 0.29 0.00 39.15 4.46
2248 2759 0.823769 GGATCTCCAATTTCGGGGCC 60.824 60.000 0.00 0.00 35.64 5.80
2271 2782 0.179137 TGCTCGACTGCTTATCACGG 60.179 55.000 0.00 0.00 0.00 4.94
2276 2787 1.671850 CGACTGCTTATCACGGTGGTT 60.672 52.381 8.50 0.00 0.00 3.67
2284 2795 3.591835 CACGGTGGTTGTGGTGGC 61.592 66.667 0.00 0.00 33.69 5.01
2285 2796 4.116585 ACGGTGGTTGTGGTGGCA 62.117 61.111 0.00 0.00 0.00 4.92
2362 2873 0.802222 ATGTCATCGACGTCGGCAAG 60.802 55.000 35.05 22.05 40.29 4.01
2371 2882 2.266055 GTCGGCAAGGGGACTGAG 59.734 66.667 0.00 0.00 42.68 3.35
2372 2883 3.003173 TCGGCAAGGGGACTGAGG 61.003 66.667 0.00 0.00 42.68 3.86
2377 2888 1.492993 GCAAGGGGACTGAGGAGGTT 61.493 60.000 0.00 0.00 42.68 3.50
2443 2954 1.619827 CCGTTCTGGTTGGTACCTACA 59.380 52.381 24.82 14.37 45.27 2.74
2467 2982 7.223584 CAGAATGTACCCCATGATATACACAA 58.776 38.462 0.00 0.00 32.82 3.33
2468 2983 7.173218 CAGAATGTACCCCATGATATACACAAC 59.827 40.741 0.00 0.00 32.82 3.32
2469 2984 5.959583 TGTACCCCATGATATACACAACA 57.040 39.130 0.00 0.00 0.00 3.33
2470 2985 6.508030 TGTACCCCATGATATACACAACAT 57.492 37.500 0.00 0.00 0.00 2.71
2517 3042 6.542821 TGTCAAATAGGTTTTCAGATCCACT 58.457 36.000 0.00 0.00 0.00 4.00
2643 3743 5.950758 TGTAATTAACGGTGCAATTCAGT 57.049 34.783 0.00 0.00 0.00 3.41
2652 3752 3.684305 CGGTGCAATTCAGTGATGTCTTA 59.316 43.478 0.00 0.00 0.00 2.10
2656 3756 5.409520 GTGCAATTCAGTGATGTCTTACAGA 59.590 40.000 0.00 0.00 0.00 3.41
2657 3757 5.409520 TGCAATTCAGTGATGTCTTACAGAC 59.590 40.000 0.00 0.00 45.26 3.51
2659 3759 6.148480 GCAATTCAGTGATGTCTTACAGACTT 59.852 38.462 5.53 0.00 45.27 3.01
2660 3760 7.331934 GCAATTCAGTGATGTCTTACAGACTTA 59.668 37.037 5.53 0.00 45.27 2.24
2661 3761 8.651588 CAATTCAGTGATGTCTTACAGACTTAC 58.348 37.037 5.53 2.61 45.27 2.34
2663 3763 7.284919 TCAGTGATGTCTTACAGACTTACAA 57.715 36.000 5.53 0.00 45.27 2.41
2664 3764 7.896811 TCAGTGATGTCTTACAGACTTACAAT 58.103 34.615 5.53 0.65 45.27 2.71
2665 3765 7.814587 TCAGTGATGTCTTACAGACTTACAATG 59.185 37.037 5.53 10.74 45.27 2.82
2666 3766 6.591834 AGTGATGTCTTACAGACTTACAATGC 59.408 38.462 5.53 0.00 45.27 3.56
2667 3767 6.591834 GTGATGTCTTACAGACTTACAATGCT 59.408 38.462 5.53 0.00 45.27 3.79
2676 3776 6.136857 ACAGACTTACAATGCTCTCCCTATA 58.863 40.000 0.00 0.00 0.00 1.31
2702 3802 4.944962 TGACTTGAAAATATGAGCCGTG 57.055 40.909 0.00 0.00 0.00 4.94
2970 4071 2.278661 GCCGCCGCTGTACTAGAC 60.279 66.667 0.00 0.00 0.00 2.59
3120 4221 1.811965 TCCGTGCACCAATCAATTCTG 59.188 47.619 12.15 0.00 0.00 3.02
3172 4276 2.260844 TCTCTCAAAACAGCACCAGG 57.739 50.000 0.00 0.00 0.00 4.45
3286 4390 3.498774 AGCCTTTGGTGATATAGCCAG 57.501 47.619 0.00 0.00 36.00 4.85
3422 4527 5.501715 CAATTAATTCACGGACATTCGGAG 58.498 41.667 0.00 0.00 0.00 4.63
3503 4612 2.419673 CCAGCATAATCAACTTCGCACA 59.580 45.455 0.00 0.00 0.00 4.57
3546 4667 3.025322 TCCAAACCTCCTTTGCTTTCA 57.975 42.857 0.00 0.00 38.40 2.69
3594 4715 4.934797 TCCTCTGATCCAAAGGAACATT 57.065 40.909 5.58 0.00 36.27 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.395426 TTGGATCAGATTTGCCATGTAATC 57.605 37.500 0.00 0.00 0.00 1.75
6 7 5.270893 TGATTTGGATCAGATTTGCCATG 57.729 39.130 0.00 0.00 37.37 3.66
7 8 5.600898 TGATGATTTGGATCAGATTTGCCAT 59.399 36.000 0.00 0.00 45.01 4.40
8 9 4.957327 TGATGATTTGGATCAGATTTGCCA 59.043 37.500 0.00 0.00 45.01 4.92
9 10 5.287226 GTGATGATTTGGATCAGATTTGCC 58.713 41.667 0.00 0.00 45.01 4.52
10 11 4.974275 CGTGATGATTTGGATCAGATTTGC 59.026 41.667 0.00 0.00 45.01 3.68
11 12 5.516996 CCGTGATGATTTGGATCAGATTTG 58.483 41.667 0.00 0.00 45.01 2.32
12 13 4.037208 GCCGTGATGATTTGGATCAGATTT 59.963 41.667 0.00 0.00 45.01 2.17
13 14 3.567164 GCCGTGATGATTTGGATCAGATT 59.433 43.478 0.00 0.00 45.01 2.40
14 15 3.144506 GCCGTGATGATTTGGATCAGAT 58.855 45.455 0.00 0.00 45.01 2.90
15 16 2.564771 GCCGTGATGATTTGGATCAGA 58.435 47.619 0.00 0.00 45.01 3.27
16 17 1.262417 CGCCGTGATGATTTGGATCAG 59.738 52.381 0.00 0.00 45.01 2.90
17 18 1.298602 CGCCGTGATGATTTGGATCA 58.701 50.000 0.00 0.00 45.81 2.92
18 19 0.588252 CCGCCGTGATGATTTGGATC 59.412 55.000 0.00 0.00 0.00 3.36
19 20 0.107214 ACCGCCGTGATGATTTGGAT 60.107 50.000 0.00 0.00 0.00 3.41
20 21 1.024046 CACCGCCGTGATGATTTGGA 61.024 55.000 0.00 0.00 43.14 3.53
21 22 1.024046 TCACCGCCGTGATGATTTGG 61.024 55.000 3.61 0.00 44.20 3.28
22 23 2.465774 TCACCGCCGTGATGATTTG 58.534 52.632 3.61 0.00 44.20 2.32
29 30 3.017771 ATGATGCTCACCGCCGTGA 62.018 57.895 7.66 7.66 46.91 4.35
110 111 0.037326 GCACATCTGGAGTCCGTTCA 60.037 55.000 4.30 0.00 0.00 3.18
197 222 4.446371 GACCTCAACTCCAACTCCATATG 58.554 47.826 0.00 0.00 0.00 1.78
326 353 8.665643 TGAAACTTCACGGAGATAAGTTTTAA 57.334 30.769 12.21 3.99 46.73 1.52
327 354 7.386848 CCTGAAACTTCACGGAGATAAGTTTTA 59.613 37.037 12.21 8.42 46.73 1.52
447 474 8.617290 TTATCCTTGTTTTGGACTCTAACTTC 57.383 34.615 0.00 0.00 36.30 3.01
470 497 9.985730 TCGTATCTACTTTTCCAAACTCTTTTA 57.014 29.630 0.00 0.00 0.00 1.52
499 526 4.253685 CACCAAGGACAATGATACGTCTT 58.746 43.478 0.00 0.00 32.57 3.01
514 541 1.776662 TCCGAGTAGATCCACCAAGG 58.223 55.000 0.00 0.00 39.47 3.61
515 542 3.651803 GATCCGAGTAGATCCACCAAG 57.348 52.381 0.00 0.00 37.31 3.61
522 549 4.728534 CGAAGATTGGATCCGAGTAGATC 58.271 47.826 7.97 0.00 41.69 2.75
523 550 3.057174 GCGAAGATTGGATCCGAGTAGAT 60.057 47.826 7.97 0.00 0.00 1.98
524 551 2.293677 GCGAAGATTGGATCCGAGTAGA 59.706 50.000 7.97 0.00 0.00 2.59
525 552 2.608261 GGCGAAGATTGGATCCGAGTAG 60.608 54.545 7.97 0.00 0.00 2.57
526 553 1.340248 GGCGAAGATTGGATCCGAGTA 59.660 52.381 7.97 0.00 0.00 2.59
527 554 0.105039 GGCGAAGATTGGATCCGAGT 59.895 55.000 7.97 0.00 0.00 4.18
528 555 0.390860 AGGCGAAGATTGGATCCGAG 59.609 55.000 7.97 0.00 0.00 4.63
529 556 0.830648 AAGGCGAAGATTGGATCCGA 59.169 50.000 3.49 3.49 0.00 4.55
530 557 0.940126 CAAGGCGAAGATTGGATCCG 59.060 55.000 7.39 0.00 0.00 4.18
531 558 1.672881 CACAAGGCGAAGATTGGATCC 59.327 52.381 4.20 4.20 31.38 3.36
532 559 2.096496 CACACAAGGCGAAGATTGGATC 59.904 50.000 0.00 0.00 31.38 3.36
533 560 2.086869 CACACAAGGCGAAGATTGGAT 58.913 47.619 0.00 0.00 31.38 3.41
534 561 1.202758 ACACACAAGGCGAAGATTGGA 60.203 47.619 0.00 0.00 31.38 3.53
535 562 1.197721 GACACACAAGGCGAAGATTGG 59.802 52.381 0.00 0.00 31.38 3.16
536 563 2.146342 AGACACACAAGGCGAAGATTG 58.854 47.619 0.00 0.00 33.01 2.67
537 564 2.549754 CAAGACACACAAGGCGAAGATT 59.450 45.455 0.00 0.00 0.00 2.40
538 565 2.146342 CAAGACACACAAGGCGAAGAT 58.854 47.619 0.00 0.00 0.00 2.40
539 566 1.138069 TCAAGACACACAAGGCGAAGA 59.862 47.619 0.00 0.00 0.00 2.87
540 567 1.528586 CTCAAGACACACAAGGCGAAG 59.471 52.381 0.00 0.00 0.00 3.79
541 568 1.134521 ACTCAAGACACACAAGGCGAA 60.135 47.619 0.00 0.00 0.00 4.70
542 569 0.464036 ACTCAAGACACACAAGGCGA 59.536 50.000 0.00 0.00 0.00 5.54
543 570 1.299541 AACTCAAGACACACAAGGCG 58.700 50.000 0.00 0.00 0.00 5.52
544 571 2.423538 ACAAACTCAAGACACACAAGGC 59.576 45.455 0.00 0.00 0.00 4.35
545 572 6.183360 ACAATACAAACTCAAGACACACAAGG 60.183 38.462 0.00 0.00 0.00 3.61
546 573 6.785191 ACAATACAAACTCAAGACACACAAG 58.215 36.000 0.00 0.00 0.00 3.16
547 574 6.751514 ACAATACAAACTCAAGACACACAA 57.248 33.333 0.00 0.00 0.00 3.33
548 575 6.751514 AACAATACAAACTCAAGACACACA 57.248 33.333 0.00 0.00 0.00 3.72
549 576 7.753132 TCAAAACAATACAAACTCAAGACACAC 59.247 33.333 0.00 0.00 0.00 3.82
550 577 7.821652 TCAAAACAATACAAACTCAAGACACA 58.178 30.769 0.00 0.00 0.00 3.72
551 578 8.856490 ATCAAAACAATACAAACTCAAGACAC 57.144 30.769 0.00 0.00 0.00 3.67
552 579 8.902806 AGATCAAAACAATACAAACTCAAGACA 58.097 29.630 0.00 0.00 0.00 3.41
555 582 9.318041 CGTAGATCAAAACAATACAAACTCAAG 57.682 33.333 0.00 0.00 0.00 3.02
556 583 7.801315 GCGTAGATCAAAACAATACAAACTCAA 59.199 33.333 0.00 0.00 0.00 3.02
557 584 7.295201 GCGTAGATCAAAACAATACAAACTCA 58.705 34.615 0.00 0.00 0.00 3.41
558 585 6.461698 CGCGTAGATCAAAACAATACAAACTC 59.538 38.462 0.00 0.00 0.00 3.01
559 586 6.073440 ACGCGTAGATCAAAACAATACAAACT 60.073 34.615 11.67 0.00 0.00 2.66
560 587 6.075280 ACGCGTAGATCAAAACAATACAAAC 58.925 36.000 11.67 0.00 0.00 2.93
561 588 6.146510 AGACGCGTAGATCAAAACAATACAAA 59.853 34.615 13.97 0.00 0.00 2.83
562 589 5.636121 AGACGCGTAGATCAAAACAATACAA 59.364 36.000 13.97 0.00 0.00 2.41
563 590 5.165676 AGACGCGTAGATCAAAACAATACA 58.834 37.500 13.97 0.00 0.00 2.29
564 591 5.515626 AGAGACGCGTAGATCAAAACAATAC 59.484 40.000 13.97 0.00 0.00 1.89
565 592 5.647589 AGAGACGCGTAGATCAAAACAATA 58.352 37.500 13.97 0.00 0.00 1.90
566 593 4.495422 AGAGACGCGTAGATCAAAACAAT 58.505 39.130 13.97 0.00 0.00 2.71
567 594 3.909430 AGAGACGCGTAGATCAAAACAA 58.091 40.909 13.97 0.00 0.00 2.83
568 595 3.570926 AGAGACGCGTAGATCAAAACA 57.429 42.857 13.97 0.00 0.00 2.83
569 596 3.918591 TGAAGAGACGCGTAGATCAAAAC 59.081 43.478 13.97 0.00 0.00 2.43
570 597 4.168922 TGAAGAGACGCGTAGATCAAAA 57.831 40.909 13.97 0.00 0.00 2.44
571 598 3.842732 TGAAGAGACGCGTAGATCAAA 57.157 42.857 13.97 0.00 0.00 2.69
572 599 3.546218 CGATGAAGAGACGCGTAGATCAA 60.546 47.826 13.97 0.00 0.00 2.57
573 600 2.032808 CGATGAAGAGACGCGTAGATCA 60.033 50.000 13.97 15.12 0.00 2.92
574 601 2.566036 CGATGAAGAGACGCGTAGATC 58.434 52.381 13.97 11.35 0.00 2.75
575 602 1.264557 CCGATGAAGAGACGCGTAGAT 59.735 52.381 13.97 0.00 0.00 1.98
576 603 0.656259 CCGATGAAGAGACGCGTAGA 59.344 55.000 13.97 0.00 0.00 2.59
577 604 0.377554 ACCGATGAAGAGACGCGTAG 59.622 55.000 13.97 0.00 0.00 3.51
578 605 1.655484 TACCGATGAAGAGACGCGTA 58.345 50.000 13.97 0.00 0.00 4.42
579 606 0.806868 TTACCGATGAAGAGACGCGT 59.193 50.000 13.85 13.85 0.00 6.01
580 607 1.781429 CATTACCGATGAAGAGACGCG 59.219 52.381 3.53 3.53 38.03 6.01
581 608 2.128035 CCATTACCGATGAAGAGACGC 58.872 52.381 0.00 0.00 38.03 5.19
582 609 2.128035 GCCATTACCGATGAAGAGACG 58.872 52.381 0.00 0.00 38.03 4.18
583 610 3.126831 CAGCCATTACCGATGAAGAGAC 58.873 50.000 0.00 0.00 38.03 3.36
584 611 2.766263 ACAGCCATTACCGATGAAGAGA 59.234 45.455 0.00 0.00 38.03 3.10
585 612 3.185246 ACAGCCATTACCGATGAAGAG 57.815 47.619 0.00 0.00 38.03 2.85
586 613 3.270027 CAACAGCCATTACCGATGAAGA 58.730 45.455 0.00 0.00 38.03 2.87
587 614 3.009723 ACAACAGCCATTACCGATGAAG 58.990 45.455 0.00 0.00 38.03 3.02
588 615 3.066291 ACAACAGCCATTACCGATGAA 57.934 42.857 0.00 0.00 38.03 2.57
589 616 2.779755 ACAACAGCCATTACCGATGA 57.220 45.000 0.00 0.00 38.03 2.92
590 617 3.009723 AGAACAACAGCCATTACCGATG 58.990 45.455 0.00 0.00 35.42 3.84
591 618 3.009723 CAGAACAACAGCCATTACCGAT 58.990 45.455 0.00 0.00 0.00 4.18
592 619 2.422597 CAGAACAACAGCCATTACCGA 58.577 47.619 0.00 0.00 0.00 4.69
593 620 1.468520 CCAGAACAACAGCCATTACCG 59.531 52.381 0.00 0.00 0.00 4.02
594 621 2.228822 CACCAGAACAACAGCCATTACC 59.771 50.000 0.00 0.00 0.00 2.85
595 622 2.351738 GCACCAGAACAACAGCCATTAC 60.352 50.000 0.00 0.00 0.00 1.89
596 623 1.885887 GCACCAGAACAACAGCCATTA 59.114 47.619 0.00 0.00 0.00 1.90
597 624 0.675633 GCACCAGAACAACAGCCATT 59.324 50.000 0.00 0.00 0.00 3.16
598 625 0.467844 TGCACCAGAACAACAGCCAT 60.468 50.000 0.00 0.00 0.00 4.40
599 626 0.682532 TTGCACCAGAACAACAGCCA 60.683 50.000 0.00 0.00 0.00 4.75
600 627 0.459489 TTTGCACCAGAACAACAGCC 59.541 50.000 0.00 0.00 0.00 4.85
601 628 2.514205 ATTTGCACCAGAACAACAGC 57.486 45.000 0.00 0.00 0.00 4.40
602 629 3.798337 GTGAATTTGCACCAGAACAACAG 59.202 43.478 0.00 0.00 32.68 3.16
603 630 3.446873 AGTGAATTTGCACCAGAACAACA 59.553 39.130 0.00 0.00 39.59 3.33
604 631 4.044426 GAGTGAATTTGCACCAGAACAAC 58.956 43.478 0.00 0.00 39.59 3.32
605 632 3.243035 CGAGTGAATTTGCACCAGAACAA 60.243 43.478 0.00 0.00 39.59 2.83
606 633 2.290367 CGAGTGAATTTGCACCAGAACA 59.710 45.455 0.00 0.00 39.59 3.18
607 634 2.290641 ACGAGTGAATTTGCACCAGAAC 59.709 45.455 0.00 0.00 39.59 3.01
608 635 2.571212 ACGAGTGAATTTGCACCAGAA 58.429 42.857 0.00 0.00 39.59 3.02
609 636 2.254546 ACGAGTGAATTTGCACCAGA 57.745 45.000 0.00 0.00 39.59 3.86
610 637 3.354089 AAACGAGTGAATTTGCACCAG 57.646 42.857 0.00 0.00 39.59 4.00
611 638 3.443037 CAAAACGAGTGAATTTGCACCA 58.557 40.909 0.00 0.00 39.59 4.17
616 643 6.183359 CGTATGAAGCAAAACGAGTGAATTTG 60.183 38.462 0.00 0.00 37.53 2.32
617 644 5.851177 CGTATGAAGCAAAACGAGTGAATTT 59.149 36.000 0.00 0.00 37.53 1.82
618 645 5.049680 ACGTATGAAGCAAAACGAGTGAATT 60.050 36.000 11.06 0.00 38.64 2.17
619 646 4.451096 ACGTATGAAGCAAAACGAGTGAAT 59.549 37.500 11.06 0.00 38.64 2.57
620 647 3.805422 ACGTATGAAGCAAAACGAGTGAA 59.195 39.130 11.06 0.00 38.64 3.18
621 648 3.386486 ACGTATGAAGCAAAACGAGTGA 58.614 40.909 11.06 0.00 38.64 3.41
622 649 3.788434 ACGTATGAAGCAAAACGAGTG 57.212 42.857 11.06 0.00 38.64 3.51
623 650 4.553323 AGTACGTATGAAGCAAAACGAGT 58.447 39.130 0.00 0.00 38.64 4.18
624 651 5.798934 ACTAGTACGTATGAAGCAAAACGAG 59.201 40.000 0.00 0.00 38.64 4.18
625 652 5.702865 ACTAGTACGTATGAAGCAAAACGA 58.297 37.500 0.00 0.00 38.64 3.85
626 653 6.088483 TGAACTAGTACGTATGAAGCAAAACG 59.912 38.462 0.00 0.00 40.99 3.60
627 654 7.342318 TGAACTAGTACGTATGAAGCAAAAC 57.658 36.000 0.00 0.00 0.00 2.43
628 655 9.811995 ATATGAACTAGTACGTATGAAGCAAAA 57.188 29.630 0.00 0.00 0.00 2.44
629 656 9.811995 AATATGAACTAGTACGTATGAAGCAAA 57.188 29.630 0.00 0.00 0.00 3.68
703 730 6.494835 AGGCTACTCACATTCATTTCCTTTTT 59.505 34.615 0.00 0.00 0.00 1.94
704 731 6.012745 AGGCTACTCACATTCATTTCCTTTT 58.987 36.000 0.00 0.00 0.00 2.27
705 732 5.574188 AGGCTACTCACATTCATTTCCTTT 58.426 37.500 0.00 0.00 0.00 3.11
706 733 5.184892 AGGCTACTCACATTCATTTCCTT 57.815 39.130 0.00 0.00 0.00 3.36
707 734 4.851639 AGGCTACTCACATTCATTTCCT 57.148 40.909 0.00 0.00 0.00 3.36
708 735 5.755861 GTCTAGGCTACTCACATTCATTTCC 59.244 44.000 0.00 0.00 0.00 3.13
709 736 6.578023 AGTCTAGGCTACTCACATTCATTTC 58.422 40.000 0.00 0.00 0.00 2.17
710 737 6.552445 AGTCTAGGCTACTCACATTCATTT 57.448 37.500 0.00 0.00 0.00 2.32
711 738 6.552445 AAGTCTAGGCTACTCACATTCATT 57.448 37.500 0.00 0.00 0.00 2.57
712 739 5.221145 CGAAGTCTAGGCTACTCACATTCAT 60.221 44.000 0.00 0.00 0.00 2.57
713 740 4.096532 CGAAGTCTAGGCTACTCACATTCA 59.903 45.833 0.00 0.00 0.00 2.57
714 741 4.498345 CCGAAGTCTAGGCTACTCACATTC 60.498 50.000 0.00 0.00 0.00 2.67
715 742 3.381908 CCGAAGTCTAGGCTACTCACATT 59.618 47.826 0.00 0.00 0.00 2.71
716 743 2.952978 CCGAAGTCTAGGCTACTCACAT 59.047 50.000 0.00 0.00 0.00 3.21
717 744 2.290768 ACCGAAGTCTAGGCTACTCACA 60.291 50.000 0.00 0.00 0.00 3.58
718 745 2.367486 ACCGAAGTCTAGGCTACTCAC 58.633 52.381 0.00 0.00 0.00 3.51
719 746 2.803030 ACCGAAGTCTAGGCTACTCA 57.197 50.000 0.00 0.00 0.00 3.41
720 747 4.422840 GAAAACCGAAGTCTAGGCTACTC 58.577 47.826 0.00 0.00 0.00 2.59
721 748 3.195182 GGAAAACCGAAGTCTAGGCTACT 59.805 47.826 0.00 0.00 0.00 2.57
722 749 3.519579 GGAAAACCGAAGTCTAGGCTAC 58.480 50.000 0.00 0.00 0.00 3.58
723 750 2.165030 CGGAAAACCGAAGTCTAGGCTA 59.835 50.000 0.00 0.00 34.88 3.93
724 751 1.067071 CGGAAAACCGAAGTCTAGGCT 60.067 52.381 2.30 0.00 34.88 4.58
725 752 1.337541 ACGGAAAACCGAAGTCTAGGC 60.338 52.381 15.45 0.00 36.94 3.93
726 753 2.334838 CACGGAAAACCGAAGTCTAGG 58.665 52.381 15.45 0.00 36.94 3.02
727 754 2.029649 TCCACGGAAAACCGAAGTCTAG 60.030 50.000 15.45 0.00 36.94 2.43
728 755 1.962807 TCCACGGAAAACCGAAGTCTA 59.037 47.619 15.45 0.00 36.94 2.59
729 756 0.754472 TCCACGGAAAACCGAAGTCT 59.246 50.000 15.45 0.00 36.94 3.24
730 757 1.463444 CATCCACGGAAAACCGAAGTC 59.537 52.381 15.45 0.00 36.94 3.01
731 758 1.202722 ACATCCACGGAAAACCGAAGT 60.203 47.619 15.45 3.68 36.94 3.01
732 759 1.196808 CACATCCACGGAAAACCGAAG 59.803 52.381 15.45 7.18 36.94 3.79
733 760 1.231221 CACATCCACGGAAAACCGAA 58.769 50.000 15.45 1.30 36.94 4.30
734 761 1.231958 GCACATCCACGGAAAACCGA 61.232 55.000 15.45 0.00 36.94 4.69
735 762 1.209127 GCACATCCACGGAAAACCG 59.791 57.895 7.12 7.12 39.31 4.44
736 763 1.209127 CGCACATCCACGGAAAACC 59.791 57.895 0.00 0.00 0.00 3.27
737 764 0.309612 AACGCACATCCACGGAAAAC 59.690 50.000 0.00 0.00 0.00 2.43
738 765 1.532007 GTAACGCACATCCACGGAAAA 59.468 47.619 0.00 0.00 0.00 2.29
739 766 1.149987 GTAACGCACATCCACGGAAA 58.850 50.000 0.00 0.00 0.00 3.13
740 767 0.671163 GGTAACGCACATCCACGGAA 60.671 55.000 0.00 0.00 0.00 4.30
741 768 1.079681 GGTAACGCACATCCACGGA 60.080 57.895 0.00 0.00 0.00 4.69
742 769 0.951525 TTGGTAACGCACATCCACGG 60.952 55.000 0.00 0.00 42.51 4.94
743 770 0.442310 CTTGGTAACGCACATCCACG 59.558 55.000 0.00 0.00 42.51 4.94
744 771 1.519408 ACTTGGTAACGCACATCCAC 58.481 50.000 0.00 0.00 42.51 4.02
745 772 2.300723 ACTACTTGGTAACGCACATCCA 59.699 45.455 0.00 0.00 42.51 3.41
746 773 2.968675 ACTACTTGGTAACGCACATCC 58.031 47.619 0.00 0.00 42.51 3.51
747 774 4.561606 CACTACTACTTGGTAACGCACATC 59.438 45.833 0.00 0.00 42.51 3.06
748 775 4.021719 ACACTACTACTTGGTAACGCACAT 60.022 41.667 0.00 0.00 42.51 3.21
749 776 3.318839 ACACTACTACTTGGTAACGCACA 59.681 43.478 0.00 0.00 42.51 4.57
750 777 3.905784 ACACTACTACTTGGTAACGCAC 58.094 45.455 0.00 0.00 42.51 5.34
751 778 3.822735 AGACACTACTACTTGGTAACGCA 59.177 43.478 0.00 0.00 42.51 5.24
752 779 4.431661 AGACACTACTACTTGGTAACGC 57.568 45.455 0.00 0.00 42.51 4.84
753 780 5.855395 GTCAAGACACTACTACTTGGTAACG 59.145 44.000 0.00 0.00 40.60 3.18
754 781 6.155136 GGTCAAGACACTACTACTTGGTAAC 58.845 44.000 0.00 0.00 40.60 2.50
755 782 5.834742 TGGTCAAGACACTACTACTTGGTAA 59.165 40.000 0.00 0.00 40.60 2.85
756 783 5.387788 TGGTCAAGACACTACTACTTGGTA 58.612 41.667 0.00 0.00 40.60 3.25
757 784 4.220724 TGGTCAAGACACTACTACTTGGT 58.779 43.478 0.00 0.00 40.60 3.67
758 785 4.281182 ACTGGTCAAGACACTACTACTTGG 59.719 45.833 0.00 0.00 40.60 3.61
759 786 5.455056 ACTGGTCAAGACACTACTACTTG 57.545 43.478 2.29 0.00 41.27 3.16
760 787 6.481434 AAACTGGTCAAGACACTACTACTT 57.519 37.500 2.29 0.00 0.00 2.24
761 788 7.592885 TTAAACTGGTCAAGACACTACTACT 57.407 36.000 2.29 0.00 0.00 2.57
762 789 8.652810 TTTTAAACTGGTCAAGACACTACTAC 57.347 34.615 2.29 0.00 0.00 2.73
763 790 9.101655 GTTTTTAAACTGGTCAAGACACTACTA 57.898 33.333 2.29 0.00 36.03 1.82
764 791 7.608761 TGTTTTTAAACTGGTCAAGACACTACT 59.391 33.333 6.87 0.00 39.59 2.57
765 792 7.754625 TGTTTTTAAACTGGTCAAGACACTAC 58.245 34.615 6.87 0.00 39.59 2.73
766 793 7.925043 TGTTTTTAAACTGGTCAAGACACTA 57.075 32.000 6.87 0.00 39.59 2.74
767 794 6.827586 TGTTTTTAAACTGGTCAAGACACT 57.172 33.333 6.87 0.00 39.59 3.55
768 795 7.876896 TTTGTTTTTAAACTGGTCAAGACAC 57.123 32.000 6.87 0.00 39.59 3.67
822 849 9.996554 TGAGAGTTTAGATGTGACATTCTTAAA 57.003 29.630 0.00 3.55 0.00 1.52
823 850 9.424319 GTGAGAGTTTAGATGTGACATTCTTAA 57.576 33.333 0.00 0.00 0.00 1.85
824 851 8.585018 TGTGAGAGTTTAGATGTGACATTCTTA 58.415 33.333 0.00 0.00 0.00 2.10
825 852 7.445121 TGTGAGAGTTTAGATGTGACATTCTT 58.555 34.615 0.00 0.00 0.00 2.52
826 853 6.997655 TGTGAGAGTTTAGATGTGACATTCT 58.002 36.000 0.00 0.00 0.00 2.40
827 854 7.658179 TTGTGAGAGTTTAGATGTGACATTC 57.342 36.000 0.00 0.00 0.00 2.67
828 855 8.627208 ATTTGTGAGAGTTTAGATGTGACATT 57.373 30.769 0.00 0.00 0.00 2.71
829 856 9.896645 ATATTTGTGAGAGTTTAGATGTGACAT 57.103 29.630 0.00 0.00 0.00 3.06
897 924 9.337396 ACTGATGTTTACTTTGTTTGTGATCTA 57.663 29.630 0.00 0.00 0.00 1.98
898 925 8.225603 ACTGATGTTTACTTTGTTTGTGATCT 57.774 30.769 0.00 0.00 0.00 2.75
899 926 8.856490 AACTGATGTTTACTTTGTTTGTGATC 57.144 30.769 0.00 0.00 31.37 2.92
1001 1028 8.837389 GGTCAAGACACTACTTCTGTTTTTATT 58.163 33.333 2.29 0.00 0.00 1.40
1002 1029 7.444487 GGGTCAAGACACTACTTCTGTTTTTAT 59.556 37.037 2.29 0.00 0.00 1.40
1003 1030 6.764560 GGGTCAAGACACTACTTCTGTTTTTA 59.235 38.462 2.29 0.00 0.00 1.52
1004 1031 5.589050 GGGTCAAGACACTACTTCTGTTTTT 59.411 40.000 2.29 0.00 0.00 1.94
1005 1032 5.123936 GGGTCAAGACACTACTTCTGTTTT 58.876 41.667 2.29 0.00 0.00 2.43
1006 1033 4.444449 GGGGTCAAGACACTACTTCTGTTT 60.444 45.833 2.09 0.00 34.49 2.83
1007 1034 3.071167 GGGGTCAAGACACTACTTCTGTT 59.929 47.826 2.09 0.00 34.49 3.16
1008 1035 2.633481 GGGGTCAAGACACTACTTCTGT 59.367 50.000 2.09 0.00 34.49 3.41
1009 1036 2.632996 TGGGGTCAAGACACTACTTCTG 59.367 50.000 2.09 0.00 34.49 3.02
1010 1037 2.972348 TGGGGTCAAGACACTACTTCT 58.028 47.619 2.09 0.00 34.49 2.85
1011 1038 3.764237 TTGGGGTCAAGACACTACTTC 57.236 47.619 2.09 0.00 34.49 3.01
1252 1298 1.077068 CGGTCTCCTCTCTCCTGCT 60.077 63.158 0.00 0.00 0.00 4.24
1253 1299 0.467290 ATCGGTCTCCTCTCTCCTGC 60.467 60.000 0.00 0.00 0.00 4.85
1254 1300 1.953686 GAATCGGTCTCCTCTCTCCTG 59.046 57.143 0.00 0.00 0.00 3.86
1255 1301 1.133606 GGAATCGGTCTCCTCTCTCCT 60.134 57.143 0.00 0.00 0.00 3.69
1256 1302 1.324383 GGAATCGGTCTCCTCTCTCC 58.676 60.000 0.00 0.00 0.00 3.71
1301 1360 3.449227 TAGGCACGGGACTGCTCG 61.449 66.667 1.13 0.00 45.58 5.03
1302 1361 1.035932 TAGTAGGCACGGGACTGCTC 61.036 60.000 16.91 0.00 41.92 4.26
1320 1379 0.394938 TCTCTGGGCGCACTTTTGTA 59.605 50.000 12.74 0.00 0.00 2.41
1321 1380 0.465460 TTCTCTGGGCGCACTTTTGT 60.465 50.000 12.74 0.00 0.00 2.83
1322 1381 0.883833 ATTCTCTGGGCGCACTTTTG 59.116 50.000 12.74 0.00 0.00 2.44
1323 1382 1.168714 GATTCTCTGGGCGCACTTTT 58.831 50.000 12.74 0.00 0.00 2.27
1324 1383 0.036732 TGATTCTCTGGGCGCACTTT 59.963 50.000 12.74 0.00 0.00 2.66
1359 1419 7.171337 GCTAATCTTGTTCTCTCCTGATTGATC 59.829 40.741 0.00 0.00 0.00 2.92
1364 1424 4.718774 TGGCTAATCTTGTTCTCTCCTGAT 59.281 41.667 0.00 0.00 0.00 2.90
1365 1425 4.096681 TGGCTAATCTTGTTCTCTCCTGA 58.903 43.478 0.00 0.00 0.00 3.86
1366 1426 4.440880 CTGGCTAATCTTGTTCTCTCCTG 58.559 47.826 0.00 0.00 0.00 3.86
1367 1427 3.454082 CCTGGCTAATCTTGTTCTCTCCT 59.546 47.826 0.00 0.00 0.00 3.69
1370 1430 2.092699 GCCCTGGCTAATCTTGTTCTCT 60.093 50.000 0.00 0.00 38.26 3.10
1403 1463 0.529378 GAAGCGTTTCCGGTCTAGGA 59.471 55.000 0.00 0.00 45.47 2.94
1405 1465 1.201647 TGAGAAGCGTTTCCGGTCTAG 59.798 52.381 8.51 0.00 45.47 2.43
1410 1888 2.380410 CCGTGAGAAGCGTTTCCGG 61.380 63.158 8.51 10.64 33.64 5.14
1428 1907 2.797177 AAAGACTGGCTGGATTCTCC 57.203 50.000 0.00 0.00 36.96 3.71
1429 1908 3.938334 GAGAAAAGACTGGCTGGATTCTC 59.062 47.826 14.43 14.43 35.92 2.87
1430 1909 3.618507 CGAGAAAAGACTGGCTGGATTCT 60.619 47.826 6.27 6.27 31.44 2.40
1431 1910 2.675348 CGAGAAAAGACTGGCTGGATTC 59.325 50.000 0.00 0.00 0.00 2.52
1437 1916 1.374758 CGGCGAGAAAAGACTGGCT 60.375 57.895 0.00 0.00 40.49 4.75
1439 1918 1.281899 GATCGGCGAGAAAAGACTGG 58.718 55.000 17.22 0.00 0.00 4.00
1464 1943 3.806521 CACTGATGATTCGTCTTCCATCC 59.193 47.826 7.38 0.00 35.72 3.51
1473 1952 3.201290 GGCAAGATCACTGATGATTCGT 58.799 45.455 0.00 0.00 46.01 3.85
1507 1986 1.795768 GAGTTCCAAGATCGTGCACA 58.204 50.000 18.64 4.45 0.00 4.57
1549 2028 3.360340 GCTGCCGTGCTCAAAGCT 61.360 61.111 0.11 0.00 42.97 3.74
1550 2029 4.410743 GGCTGCCGTGCTCAAAGC 62.411 66.667 1.35 0.00 42.82 3.51
1551 2030 4.093952 CGGCTGCCGTGCTCAAAG 62.094 66.667 31.72 1.11 42.73 2.77
1645 2142 3.818787 GGCCGCAGCAGGAATGTG 61.819 66.667 7.39 0.00 42.56 3.21
1648 2145 3.694058 CTGAGGCCGCAGCAGGAAT 62.694 63.158 24.15 0.00 42.56 3.01
1727 2224 0.179000 GTGGGATTGTCGGAGAGCAT 59.821 55.000 0.00 0.00 36.95 3.79
1957 2460 2.563297 GTTGGAACGGATGAACCCC 58.437 57.895 0.00 0.00 34.64 4.95
1971 2474 0.611200 TGGACTACCATCACCGTTGG 59.389 55.000 0.00 0.00 41.77 3.77
2077 2583 0.037512 AGACGACGACGAGGAAGAGA 60.038 55.000 15.32 0.00 42.66 3.10
2271 2782 2.339712 GCATGCCACCACAACCAC 59.660 61.111 6.36 0.00 0.00 4.16
2284 2795 0.949397 ATATGCAGTTGCCTCGCATG 59.051 50.000 6.37 0.00 45.58 4.06
2362 2873 0.325272 GTTGAACCTCCTCAGTCCCC 59.675 60.000 0.00 0.00 0.00 4.81
2371 2882 0.536460 TGAAAGGCCGTTGAACCTCC 60.536 55.000 9.25 0.00 34.31 4.30
2372 2883 0.875059 CTGAAAGGCCGTTGAACCTC 59.125 55.000 9.25 0.00 34.31 3.85
2443 2954 7.147391 TGTTGTGTATATCATGGGGTACATTCT 60.147 37.037 0.00 0.00 37.84 2.40
2480 3005 8.630054 AACCTATTTGACATTAAGTACAAGCA 57.370 30.769 0.00 0.00 0.00 3.91
2573 3111 6.096141 TGGTAAAGTTGTCTGCAATTTTGAGA 59.904 34.615 9.87 0.00 42.10 3.27
2615 3715 9.692749 TGAATTGCACCGTTAATTACAAATTTA 57.307 25.926 0.00 0.00 0.00 1.40
2616 3716 8.594881 TGAATTGCACCGTTAATTACAAATTT 57.405 26.923 0.00 0.00 0.00 1.82
2617 3717 7.870445 ACTGAATTGCACCGTTAATTACAAATT 59.130 29.630 0.00 0.00 0.00 1.82
2628 3728 2.226437 GACATCACTGAATTGCACCGTT 59.774 45.455 0.00 0.00 0.00 4.44
2652 3752 3.177228 AGGGAGAGCATTGTAAGTCTGT 58.823 45.455 0.00 0.00 0.00 3.41
2656 3756 7.380423 AACATATAGGGAGAGCATTGTAAGT 57.620 36.000 0.00 0.00 0.00 2.24
2657 3757 7.933577 TCAAACATATAGGGAGAGCATTGTAAG 59.066 37.037 0.00 0.00 0.00 2.34
2659 3759 7.071196 AGTCAAACATATAGGGAGAGCATTGTA 59.929 37.037 0.00 0.00 0.00 2.41
2660 3760 6.058183 GTCAAACATATAGGGAGAGCATTGT 58.942 40.000 0.00 0.00 0.00 2.71
2661 3761 6.294473 AGTCAAACATATAGGGAGAGCATTG 58.706 40.000 0.00 0.00 0.00 2.82
2663 3763 6.100279 TCAAGTCAAACATATAGGGAGAGCAT 59.900 38.462 0.00 0.00 0.00 3.79
2664 3764 5.425217 TCAAGTCAAACATATAGGGAGAGCA 59.575 40.000 0.00 0.00 0.00 4.26
2665 3765 5.918608 TCAAGTCAAACATATAGGGAGAGC 58.081 41.667 0.00 0.00 0.00 4.09
2666 3766 8.792830 TTTTCAAGTCAAACATATAGGGAGAG 57.207 34.615 0.00 0.00 0.00 3.20
2676 3776 6.071952 ACGGCTCATATTTTCAAGTCAAACAT 60.072 34.615 0.00 0.00 0.00 2.71
2749 3849 9.341899 ACTTGTTATCGCAAATGAATAAAGTTC 57.658 29.630 0.00 0.00 0.00 3.01
2970 4071 2.401583 TGAACAATGGAGGATGGTCG 57.598 50.000 0.00 0.00 36.02 4.79
3120 4221 0.903942 TTCATTGCAGGGGGAATTGC 59.096 50.000 0.00 0.00 40.67 3.56
3188 4292 4.036498 GTGGATGCCTCTTTTGATCATGAG 59.964 45.833 0.09 5.16 0.00 2.90
3286 4390 7.228840 TCGTGCAATTACGTTAAACTATGTTC 58.771 34.615 0.00 0.00 44.06 3.18
3422 4527 2.223994 GGGAGCTTACGATCTTGGGTAC 60.224 54.545 0.00 0.00 0.00 3.34
3594 4715 2.773993 GTTACCCTCAATTGTCCGGA 57.226 50.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.